Pregenerated sensors for NUP93-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000261302Ensembl transcript IDs: ENST00000561663.6, ENST00000564560.1, ENST00000668197.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGCCAGGCATCCTCAAGGGATGCACTGGCAACAGCAGGGGGATGGTaGCAGCCGGTGTGGGGATCTGGAGCACCCACACGCCCACATCCT | + |
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Preference number: 5 (lower is better) Translates to: CQASSRDALATAGGW*QPVWGSGAPTRPHP Trigger: AGGATGTGGGCGTGTGGGTGCTCCAGATCCCCACACCGGCTGTCACCATCCCCCTGCTGTTGCCAGTGCATCCCTTGAGGATGCCTGGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS CCA 90 bp | CAGGTGAGCACTTGTTCTGTTGTCAGTCACCATTTGCCCCCGGGGTaGGGTGTAACCTGCCAGGCATCCTCAAGGGATGCACTGGCAACA | + |
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Preference number: 5 (lower is better) Translates to: QVSTCSVVSHHLPPG*GVTCQASSRDALAT Trigger: TGTTGCCAGTGCATCCCTTGAGGATGCCTGGCAGGTTACACCCCACCCCGGGGGCAAATGGTGACTGACAACAGAACAAGTGCTCACCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS CCA 90 bp | TCTTCCAGCCGCACACCCCTTCTTTCTAGTCTCCAAACACTAAGCTaGCTTCCCCTGGAGACTTCACTCTTGTTCCCTCTGCCTGGAATT | + |
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Preference number: 5 (lower is better) Translates to: SSSRTPLLSSLQTLS*LPLETSLLFPLPGI Trigger: AATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCCAGGGGAAGCCAGCTTAGTGTTTGGAGACTAGAAAGAAGGGGTGTGCGGCTGGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS CCA 90 bp | CCCTTACTGACACCTATTTACAAGCAAGGCTTAAAAAGAAGCATCTaGGGGGCGCCGGGTGAAGGCAAATCTTCAGGGCTCTCGGATCAA | + |
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Preference number: 5 (lower is better) Translates to: PLLTPIYKQGLKRSI*GAPGEGKSSGLSDQ Trigger: TTGATCCGAGAGCCCTGAAGATTTGCCTTCACCCGGCGCCCCCCAGATGCTTCTTTTTAAGCCTTGCTTGTAAATAGGTGTCAGTAAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS CCA 90 bp | ACTAAGCTGGCTTCCCCTGGAGACTTCACTCTTGTTCCCTCTGCCTaGAATTCTTTGAAGCCAGAACTTTGCAAGCCCCATCCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: TKLASPGDFTLVPSA*NSLKPELCKPHPFS Trigger: TGAGAAAGGATGGGGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCCAGGGGAAGCCAGCTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS TCA 90 bp | CTTCCCCTGGAGACTTCACTCTTGTTCCCTCTGCCTGGAATTCTTTaGAGCCAGAACTTTGCAAGCCCCATCCTTTCTCATCCTTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LPLETSLLFPLPGIL*SQNFASPILSHPSL Trigger: TAAAGAAGGATGAGAAAGGATGGGGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCCAGGGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS GCA 90 bp | GCTCTTCTTGCAAAGTGCAGTTATTTATTACATTTTTGTTTCCCCTaGCAACCTGGGAACTCAATGAGGGCAGCGATCTTGTCTGACGTG | + |
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Preference number: 5 (lower is better) Translates to: ALLAKCSYLLHFCFP*QPGNSMRAAILSDV Trigger: CACGTCAGACAAGATCGCTGCCCTCATTGAGTTCCCAGGTTGGCAGGGGAAACAAAAATGTAATAAATAACTGCACTTTGCAAGAAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS CCA 72 bp | AATCGCTTTCTCCCGGCAGAGCCGACTCTAACCAAGTaGGAAAGGCGAGGTCCGTGGCTGCCTGTGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: NRFLPAEPTLTK*ERRGPWLPVAQ Trigger: CTGGGCCACAGGCAGCCACGGACCTCGCCTTTCCCACTTGGTTAGAGTCGGCTCTGCCGGGAGAAAGCGATT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS TCA 72 bp | AGTAGAGGGGGAAGGCCAGCCCAGAGGGTAAGGACCTaGGCCCTGGAACTGTCTGGGTTAAAATCCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SRGGRPAQRVRT*ALELSGLKSWL Trigger: GAGCCAGGATTTTAACCCAGACAGTTCCAGGGCTCAGGTCCTTACCCTCTGGGCTGGCCTTCCCCCTCTACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564560.1 |
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| CDS CAA 90 bp | TTCCGTCCTCTACCTCCAGCTGGGAACTCAATGAGGGCAGCGATCTaGTCTGACGTGGTCGCCACGGTGTTGCCAGTTCCTAGACTAAGG | + |
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Preference number: 6 (lower is better) Translates to: FRPLPPAGNSMRAAI*SDVVATVLPVPRLR Trigger: CCTTAGTCTAGGAACTGGCAACACCGTGGCGACCACGTCAGACAAGATCGCTGCCCTCATTGAGTTCCCAGCTGGAGGTAGAGGACGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668197.1 |
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| CDS TCA 72 bp | CCTCCCACTGAACTGTCCTGCTGTGGGGCAAGCAGGTaGGCACTTGTTCTGTTGTCAGTCACCATTTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: PPTELSCCGASR*ALVLLSVTICP Trigger: GGGGCAAATGGTGACTGACAACAGAACAAGTGCTCACCTGCTTGCCCCACAGCAGGACAGTTCAGTGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS TCA 72 bp | CCTGATCCAGGGTGCTCTAGAACAAATTCCTCCCACTaGACTGTCCTGCTGTGGGGCAAGCAGGTGAGCACT | + |
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Preference number: 6 (lower is better) Translates to: PDPGCSRTNSSH*TVLLWGKQVST Trigger: AGTGCTCACCTGCTTGCCCCACAGCAGGACAGTTCAGTGGGAGGAATTTGTTCTAGAGCACCCTGGATCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS GCA 72 bp | GCTGGCTTCCCCTGGAGACTTCACTCTTGTTCCCTCTaGCTGGAATTCTTTGAAGCCAGAACTTTGCAAGCC | + |
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Preference number: 6 (lower is better) Translates to: AGFPWRLHSCSL*LEFFEARTLQA Trigger: GGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCCAGGGGAAGCCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS CCA 72 bp | GCTTCCCCTGGAGACTTCACTCTTGTTCCCTCTGCCTaGAATTCTTTGAAGCCAGAACTTTGCAAGCCCCAT | + |
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Preference number: 6 (lower is better) Translates to: ASPGDFTLVPSA*NSLKPELCKPH Trigger: ATGGGGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCCAGGGGAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS CCA 72 bp | ACACCTATTTACAAGCAAGGCTTAAAAAGAAGCATCTaGGGGGCGCCGGGTGAAGGCAAATCTTCAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: TPIYKQGLKRSI*GAPGEGKSSGL Trigger: GAGCCCTGAAGATTTGCCTTCACCCGGCGCCCCCCAGATGCTTCTTTTTAAGCCTTGCTTGTAAATAGGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000668197.1 |
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| CDS CAA 90 bp | GCTTCCCCTGGAGACTTCACTCTTGTTCCCTCTGCCTGGAATTCTTaGAAGCCAGAACTTTGCAAGCCCCATCCTTTCTCATCCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: ASPGDFTLVPSAWNS*KPELCKPHPFSSFF Trigger: AAAGAAGGATGAGAAAGGATGGGGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCCAGGGGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS CAA 72 bp | GGAGACTTCACTCTTGTTCCCTCTGCCTGGAATTCTTaGAAGCCAGAACTTTGCAAGCCCCATCCTTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: GDFTLVPSAWNS*KPELCKPHPFS Trigger: TGAGAAAGGATGGGGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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| CDS TCA 72 bp | GAGACTTCACTCTTGTTCCCTCTGCCTGGAATTCTTTaGAGCCAGAACTTTGCAAGCCCCATCCTTTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: ETSLLFPLPGIL*SQNFASPILSH Trigger: ATGAGAAAGGATGGGGCTTGCAAAGTTCTGGCTTCAAAGAATTCCAGGCAGAGGGAACAAGAGTGAAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561663.6 ENST00000564560.1 |
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