Pregenerated sensors for NUP50-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000226328Ensembl transcript IDs: ENST00000426282.6, ENST00000432502.1, ENST00000609284.2, ENST00000665704.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGCAGCTCCCACACGCGGACACCGCGGGCCTCGGCCATGTCCACTaGCCGACCTTCCTCGCCGGAACTCCTCGCGCATCGCCGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: LQLPHADTAGLGHVH*PTFLAGTPRASPAP Trigger: AGGGGCCGGCGATGCGCGAGGAGTTCCGGCGAGGAAGGTCGGTCAGTGGACATGGCCGAGGCCCGCGGTGTCCGCGTGTGGGAGCTGCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426282.6 |
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| CDS GCA 90 bp | CTCGTCTACGATTCCCGAGGGTTGCGGGCGGCCTCTCCTCAGCCCTaGAGCTCCCACACGCGGACACCGCGGGCCTCGGCCATGTCCACT | + |
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Preference number: 5 (lower is better) Translates to: LVYDSRGLRAASPQP*SSHTRTPRASAMST Trigger: AGTGGACATGGCCGAGGCCCGCGGTGTCCGCGTGTGGGAGCTGCAGGGCTGAGGAGAGGCCGCCCGCAACCCTCGGGAATCGTAGACGAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426282.6 |
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| CDS GCA 90 bp | TCCTCACACGATTCCCGAGGGTTGCGGGCGGCCTCTCCTCAGCCCTaGAGCTCCCACACGCGGACACCGCGGGCCTCGGCCATGTCCACT | + |
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Preference number: 5 (lower is better) Translates to: SSHDSRGLRAASPQP*SSHTRTPRASAMST Trigger: AGTGGACATGGCCGAGGCCCGCGGTGTCCGCGTGTGGGAGCTGCAGGGCTGAGGAGAGGCCGCCCGCAACCCTCGGGAATCGTGTGAGGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432502.1 |
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| CDS TCA 90 bp | CCCCATGGTCAAAGCTGGGTGGGAGCACATGCACATTCCAGCTTGTaGGAAGAGGAAAGAGCACCGCTGCAGGACCAGGGCTCATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: PHGQSWVGAHAHSSL*EEERAPLQDQGSSS Trigger: GGAAGATGAGCCCTGGTCCTGCAGCGGTGCTCTTTCCTCTTCTCACAAGCTGGAATGTGCATGTGCTCCCACCCAGCTTTGACCATGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 90 bp | CTAGCAACAAAGCAGACAAGAAGTGTAGTCTCTCCCTGGGCCCAATaGCAATTCTGTTCCTCACACGATTCCCGAGGGTTGCGGGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: LATKQTRSVVSPWAQ*QFCSSHDSRGLRAA Trigger: GGCCGCCCGCAACCCTCGGGAATCGTGTGAGGAACAGAATTGCCATTGGGCCCAGGGAGAGACTACACTTCTTGTCTGCTTTGTTGCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432502.1 |
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| CDS CCA 90 bp | CAGGACCAGGGCTCATCTTCCATGCCCAGGGCTCATTTTCCATGCTaGGGACGACCTAGAAGTTGCACCATCATCACTGCACACGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: QDQGSSSMPRAHFPC*GRPRSCTIITAHVL Trigger: CAGAACGTGTGCAGTGATGATGGTGCAACTTCTAGGTCGTCCCCAGCATGGAAAATGAGCCCTGGGCATGGAAGATGAGCCCTGGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 90 bp | AAGGCCGCACTAGCAACAAAGCAGACAAGAAGTGTAGTCTCTCCCTaGGCCCAATGGCAATTCTGTTCCTCACACGATTCCCGAGGGTTG | + |
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Preference number: 5 (lower is better) Translates to: KAALATKQTRSVVSP*AQWQFCSSHDSRGL Trigger: CAACCCTCGGGAATCGTGTGAGGAACAGAATTGCCATTGGGCCCAGGGAGAGACTACACTTCTTGTCTGCTTTGTTGCTAGTGCGGCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432502.1 |
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| CDS CCA 90 bp | AATGCCCAGAACTGCGCTAGCCCCACCTTCTGTCTCAGTGGTGTGTaGTCTTCCCAGCAATGCTTAGAAAGAGAGAACGGTGTCCTCATT | + |
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Preference number: 5 (lower is better) Translates to: NAQNCASPTFCLSGV*SSQQCLERENGVLI Trigger: AATGAGGACACCGTTCTCTCTTTCTAAGCATTGCTGGGAAGACCACACACCACTGAGACAGAAGGTGGGGCTAGCGCAGTTCTGGGCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000426282.6 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 90 bp | AAGGCCGCACTAGCAACAAAGCAGACAAGAAGTGTAGTCTCTCCCTaGGCCCAATGGCAATTCTGTTCCTGTAATCCTAGCACTTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: KAALATKQTRSVVSP*AQWQFCSCNPSTLG Trigger: TCCCAAAGTGCTAGGATTACAGGAACAGAATTGCCATTGGGCCCAGGGAGAGACTACACTTCTTGTCTGCTTTGTTGCTAGTGCGGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426282.6 ENST00000609284.2 ENST00000665704.1 |
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| CDS TCA 90 bp | CTCTGCAAATGTGACTTGATCAAGGATCTGCAGATGAGAACACACTaGATTAGCTGGGTGGGTCCTAAATGCCATCACAGTGTCTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: LCKCDLIKDLQMRTH*ISWVGPKCHHSVFS Trigger: TGAAAAGACACTGTGATGGCATTTAGGACCCACCCAGCTAATTCAGTGTGTTCTCATCTGCAGATCCTTGATCAAGTCACATTTGCAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609284.2 |
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| CDS CCA 72 bp | GCCGGCCCCTCAGCGGCGACTAGCGCGCGAACATCCTaGAAGACGCGTTGCCGGCCCCACGTGAGCCGACGC | + |
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Preference number: 6 (lower is better) Translates to: AGPSAATSARTS*KTRCRPHVSRR Trigger: GCGTCGGCTCACGTGGGGCCGGCAACGCGTCTTCCAGGATGTTCGCGCGCTAGTCGCCGCTGAGGGGCCGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426282.6 |
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| CDS GCA 72 bp | GCGGCGACTAGCGCGCGAACATCCTGGAAGACGCGTTaGCGGCCCCACGTGAGCCGACGCCCCAAAGCGCGG | + |
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Preference number: 6 (lower is better) Translates to: AATSARTSWKTR*RPHVSRRPKAR Trigger: CCGCGCTTTGGGGCGTCGGCTCACGTGGGGCCGGCAACGCGTCTTCCAGGATGTTCGCGCGCTAGTCGCCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426282.6 |
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| CDS TCA 72 bp | CCACACGCGGACACCGCGGGCCTCGGCCATGTCCACTaGCCGACCTTCCTCGCCGGAACTCCTCGCGCATCG | + |
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Preference number: 6 (lower is better) Translates to: PHADTAGLGHVH*PTFLAGTPRAS Trigger: CGATGCGCGAGGAGTTCCGGCGAGGAAGGTCGGTCAGTGGACATGGCCGAGGCCCGCGGTGTCCGCGTGTGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426282.6 |
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| CDS TCA 72 bp | CAAAGCTGGGTGGGAGCACATGCACATTCCAGCTTGTaGGAAGAGGAAAGAGCACCGCTGCAGGACCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: QSWVGAHAHSSL*EEERAPLQDQG Trigger: GCCCTGGTCCTGCAGCGGTGCTCTTTCCTCTTCTCACAAGCTGGAATGTGCATGTGCTCCCACCCAGCTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS GCA 72 bp | CCTAGCACTTTGGGAGGCCCAGACTGGAGAACGGCTTaGGGCCAGGAATTCGAGACCAACCTGGCCAACATA | + |
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Preference number: 6 (lower is better) Translates to: PSTLGGPDWRTA*GQEFETNLANI Trigger: TATGTTGGCCAGGTTGGTCTCGAATTCCTGGCCGCAAGCCGTTCTCCAGTCTGGGCCTCCCAAAGTGCTAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426282.6 ENST00000609284.2 ENST00000665704.1 |
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| CDS GCA 72 bp | CACTCAAGGACCCAGGCCCTTTCCACCTTGTTGCTCTaGCAGACTGCAGAGTACTGTTTTCGCCCCATGGTC | + |
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Preference number: 6 (lower is better) Translates to: HSRTQALSTLLL*QTAEYCFRPMV Trigger: GACCATGGGGCGAAAACAGTACTCTGCAGTCTGGCAGAGCAACAAGGTGGAAAGGGCCTGGGTCCTTGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS TCA 72 bp | TGTTGGCCAGGCTGGTCTCGAACTCTTAGACTCAAGTaGTCCACCCAACTCAGGCCCCCAAAGTGCTGCGAT | + |
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Preference number: 6 (lower is better) Translates to: CWPGWSRTLRLK*STQLRPPKCCD Trigger: ATCGCAGCACTTTGGGGGCCTGAGTTGGGTGGATCACTTGAGTCTAAGAGTTCGAGACCAGCCTGGCCAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000426282.6 |
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| CDS CCA 72 bp | TGCTCTGCCAGACTGCAGAGTACTGTTTTCGCCCCATaGTCAAAGCTGGGTGGGAGCACATGCACATTCCAG | + |
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Preference number: 6 (lower is better) Translates to: CSARLQSTVFAP*SKLGGSTCTFQ Trigger: CTGGAATGTGCATGTGCTCCCACCCAGCTTTGACCATGGGGCGAAAACAGTACTCTGCAGTCTGGCAGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS GCA 72 bp | CAGGGCTCATCTTCCATGCCCAGGGCTCATTTTCCATaGTGGGGACGACCTAGAAGTTGCACCATCATCACT | + |
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Preference number: 6 (lower is better) Translates to: QGSSSMPRAHFP*WGRPRSCTIIT Trigger: AGTGATGATGGTGCAACTTCTAGGTCGTCCCCAGCATGGAAAATGAGCCCTGGGCATGGAAGATGAGCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 72 bp | GGCTCATCTTCCATGCCCAGGGCTCATTTTCCATGCTaGGGACGACCTAGAAGTTGCACCATCATCACTGCA | + |
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Preference number: 6 (lower is better) Translates to: GSSSMPRAHFPC*GRPRSCTIITA Trigger: TGCAGTGATGATGGTGCAACTTCTAGGTCGTCCCCAGCATGGAAAATGAGCCCTGGGCATGGAAGATGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 72 bp | AACTGCGCTAGCCCCACCTTCTGTCTCAGTGGTGTGTaGTCTTCCCAGCAATGCTTAGAAAGAGAGAACGGT | + |
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Preference number: 6 (lower is better) Translates to: NCASPTFCLSGV*SSQQCLERENG Trigger: ACCGTTCTCTCTTTCTAAGCATTGCTGGGAAGACCACACACCACTGAGACAGAAGGTGGGGCTAGCGCAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000426282.6 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 72 bp | AAGCAGACAAGAAGTGTAGTCTCTCCCTGGGCCCAATaGCAATTCTGTTCCTCACACGATTCCCGAGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: KQTRSVVSPWAQ*QFCSSHDSRGL Trigger: CAACCCTCGGGAATCGTGTGAGGAACAGAATTGCCATTGGGCCCAGGGAGAGACTACACTTCTTGTCTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432502.1 |
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| CDS CCA 72 bp | CTAGCAACAAAGCAGACAAGAAGTGTAGTCTCTCCCTaGGCCCAATGGCAATTCTGTTCCTCACACGATTCC | + |
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Preference number: 6 (lower is better) Translates to: LATKQTRSVVSP*AQWQFCSSHDS Trigger: GGAATCGTGTGAGGAACAGAATTGCCATTGGGCCCAGGGAGAGACTACACTTCTTGTCTGCTTTGTTGCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432502.1 |
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| CDS GCA 72 bp | ACCTTCTGTCTCAGTGGTGTGTGGTCTTCCCAGCAATaGTTAGAAAGAGAGAACGGTGTCCTCATTTCACAG | + |
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Preference number: 6 (lower is better) Translates to: TFCLSGVWSSQQ*LERENGVLISQ Trigger: CTGTGAAATGAGGACACCGTTCTCTCTTTCTAAGCATTGCTGGGAAGACCACACACCACTGAGACAGAAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426282.6 ENST00000609284.2 ENST00000665704.1 |
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| CDS CCA 72 bp | AAGCAGACAAGAAGTGTAGTCTCTCCCTGGGCCCAATaGCAATTCTGTTCCTGTAATCCTAGCACTTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: KQTRSVVSPWAQ*QFCSCNPSTLG Trigger: TCCCAAAGTGCTAGGATTACAGGAACAGAATTGCCATTGGGCCCAGGGAGAGACTACACTTCTTGTCTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426282.6 ENST00000609284.2 ENST00000665704.1 |
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| CDS TCA 72 bp | AACACTTGGGGTAACCATTTGGACAGAGTTGGTAGGTaGAGATGCTGGTACCACATAACCAAGGAACTCTAC | + |
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Preference number: 6 (lower is better) Translates to: NTWGNHLDRVGR*RCWYHITKELY Trigger: GTAGAGTTCCTTGGTTATGTGGTACCAGCATCTTCACCTACCAACTCTGTCCAAATGGTTACCCCAAGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665704.1 |
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| CDS TCA 72 bp | TCCAGGCAGCTAAAACAGAGAGACTCTAAAAGACAGTaGCTCACAGAAAGTCCTTATCATATAACAGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: SRQLKQRDSKRQ*LTESPYHITVP Trigger: TGGGACTGTTATATGATAAGGACTTTCTGTGAGTCACTGTCTTTTAGAGTCTCTCTGTTTTAGCTGCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000426282.6 ENST00000432502.1 ENST00000609284.2 ENST00000665704.1 |
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