Pregenerated sensors for NUP50 (Homo sapiens)
Ensembl gene IDs: ENSG00000093000Ensembl transcript IDs: ENST00000396096.6, ENST00000407019.6, ENST00000417702.5, ENST00000419387.5, ENST00000432340.1, ENST00000434760.5, ENST00000445721.5, ENST00000461194.5, ENST00000469163.1, ENST00000484186.5, ENST00000486184.1, ENST00000493456.5, ENST00000497960.5
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTaGTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTC | + |
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Preference number: 1 (lower is better) Translates to: PTCPLYERPRRHLGP*WTTTALPQCAQSTL Trigger: GAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR CCA 90 bp | ACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTaGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTCATG | + |
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Preference number: 1 (lower is better) Translates to: TCPLYERPRRHLGPC*TTTALPQCAQSTLM Trigger: CATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR GCA 90 bp | GTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTGGACAACCACTaGTCTTCCACAGTGCGCTCAAAGCACACTCATGTCCACACTTCT | + |
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Preference number: 1 (lower is better) Translates to: VRKATEAPRTLLDNH*SSTVRSKHTHVHTS Trigger: AGAAGTGTGGACATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR CAA 90 bp | CCCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTaGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACT | + |
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Preference number: 2 (lower is better) Translates to: PNLPTVRKATEAPRT*LDNHCSSTVRSKHT Trigger: AGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTGACTGCTCTTCCACAGTaGGCTCAAAGCACACTCATG | + |
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Preference number: 2 (lower is better) Translates to: LPNLPTVRKATEAPRTLLTALPQ*AQSTLM Trigger: CATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGT...CAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGGGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR-3UTR GCA 90 bp | GATGAGTCCTGCCCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGATTGCTGGACAACCACTaGTCTTCCACAGTGCGCTCA | + |
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Preference number: 2 (lower is better) Translates to: DESCPTCPLYERPRRHLGLLDNH*SSTVRS Trigger: TGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAA...TCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGGGCAGGACTCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR GCA 72 bp | GCCACGGAGGCACCTAGGACCTTGCTGGACAACCACTaGTCTTCCACAGTGCGCTCAAAGCACACTCATGTC | + |
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Preference number: 3 (lower is better) Translates to: ATEAPRTLLDNH*SSTVRSKHTHV Trigger: GACATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR GCA 72 bp | CCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTaGTGGACAACCACTGCTCTTCCACAGTGCGCTCAA | + |
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Preference number: 3 (lower is better) Translates to: PLYERPRRHLGP*WTTTALPQCAQ Trigger: TTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR CCA 72 bp | CTGTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTaGACAACCACTGCTCTTCCACAGTGCGCTCAAAGC | + |
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Preference number: 3 (lower is better) Translates to: LYERPRRHLGPC*TTTALPQCAQS Trigger: GCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| 3UTR CAA 72 bp | CCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTaGCTGGACAACCACTGCTCTTCCACAGTGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PTVRKATEAPRT*LDNHCSSTVRS Trigger: TGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | CCCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTGGACAGGCACCTAGGACCTTaGTGGACAACCACTGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: PNLPTVRKATEAPRTLLDRHLGP*WTTTAL Trigger: AAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCT...GTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | GATGAGTCCTGCCCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGAGAGTCCTGCCCAACTTaGCCACTGTACGAAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: DESCPTCPLYERPRRHLGESCPT*PLYERP Trigger: TGGCCTTTCGTACAGTGGGCAAGTTGGGCAGGACTC...TCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGGGCAGGACTCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | CCCAACTTGCCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTGGACACTGCTCTTCCACAGTaGGCTCAAAGCACACTCATG | + |
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Preference number: 4 (lower is better) Translates to: PNLPTVRKATEAPRTLLDTALPQ*AQSTLM Trigger: CATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGT...GTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGCAAGTTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | CCTAGGACCTTGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTGAGTCCTGCCCAACTTaGCCACTGTACGAAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: PRTLLDNHCSSTVRSKHTESCPT*PLYERP Trigger: TGGCCTTTCGTACAGTGGGCAAGTTGGGCAGGACTC...AGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR CCA 90 bp | GAGGCACCTAGGACCTTGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACCTAGGACCTTGCTaGACAACCACTGCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: EAPRTLLDNHCSSTVRSKHLGPC*TTTALP Trigger: TGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTG...CTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | GAGGCACCTAGGACCTTGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGACTGCTCTTCCACAGTaGGCTCAAAGCACACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: EAPRTLLDNHCSSTVRSKTALPQ*AQSTLM Trigger: CATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGT...CTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR TCA 90 bp | GAGGCACCTAGGACCTTGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGTCATGTCCACACTTCTaGTGTCCACGTCAGAAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: EAPRTLLDNHCSSTVRSKSCPHF*CPRQKA Trigger: AGCTTTCTGACGTGGACATCAGAAGTGTGGACATGA...CTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | AGGACCTTGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTCATTTGCTGGACAACCACTaGTCTTCCACAGTGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: RTLLDNHCSSTVRSKHTHLLDNH*SSTVRS Trigger: TGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAA...ATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR CCA 90 bp | CTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTCATGTCCACACTCACCTAGGACCTTGCTaGACAACCACTGCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LDNHCSSTVRSKHTHVHTHLGPC*TTTALP Trigger: TGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTG...AGTGTGGACATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR TCA 90 bp | AGGACCTTGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTCATTCATGTCCACACTTCTaGTGTCCACGTCAGAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: RTLLDNHCSSTVRSKHTHSCPHF*CPRQKA Trigger: AGCTTTCTGACGTGGACATCAGAAGTGTGGACATGA...ATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR GCA 90 bp | ACTCATGTCCACACTTCTGATGTCCACGTCAGAAAGCTGCTGAATATCTTCGGCTTGCTGGACAACCACTaGTCTTCCACAGTGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: THVHTSDVHVRKLLNIFGLLDNH*SSTVRS Trigger: TGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAA...GCCGAAGATATTCAGCAGCTTTCTGACGTGGACATCAGAAGTGTGGACATGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS CCA 90 bp | GAGAACTGGGAGGCCTCGGGGAGCACTTGCCCTCACTGTGAGGAGTaGCCTTCCGTCCTCCCTCCAGCCCGGGTCTCTGCACCCACACAG | + |
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Preference number: 5 (lower is better) Translates to: ENWEASGSTCPHCEE*PSVLPPARVSAPTQ Trigger: CTGTGTGGGTGCAGAGACCCGGGCTGGAGGGAGGACGGAAGGCCACTCCTCACAGTGAGGGCAAGTGCTCCCCGAGGCCTCCCAGTTCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS GCA 90 bp | CTCCCTGGAGTTTCTGCAACACAGCCCCCTGTTCTCTACCACTACTaGCCGCTCCACCGCAGGCCTGCCCCGTCTTCCTCCTCCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: LPGVSATQPPVLYHY*PLHRRPAPSSSSSG Trigger: CCCGGAGGAGGAGGAAGACGGGGCAGGCCTGCGGTGGAGCGGGCAGTAGTGGTAGAGAACAGGGGGCTGTGTTGCAGAAACTCCAGGGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS GCA 90 bp | AATCAGGACTGGTTCCCTGAGAACTGGGAGGCCTCGGGGAGCACTTaGCCTCACTGTGAGGAGTGGCCTTCCGTCCTCCCTCCAGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: NQDWFPENWEASGST*PHCEEWPSVLPPAR Trigger: CCGGGCTGGAGGGAGGACGGAAGGCCACTCCTCACAGTGAGGGCAAGTGCTCCCCGAGGCCTCCCAGTTCTCAGGGAACCAGTCCTGATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS GCA 90 bp | TGTTCCCACCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTaGTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTC | + |
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Preference number: 5 (lower is better) Translates to: CSHPLYERPRRHLGP*WTTTALPQCAQSTL Trigger: GAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGTGGGAACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000407019.6 |
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| CDS GCA 90 bp | TTTGCACTGAAGGAAGAACACGGTGGCACAACCCAGTGTCTTCACTaGGCCACACGGACAAAGGACACCTCTGTCACAGGCCGGCACAGC | + |
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Preference number: 5 (lower is better) Translates to: FALKEEHGGTTQCLH*ATRTKDTSVTGRHS Trigger: GCTGTGCCGGCCTGTGACAGAGGTGTCCTTTGTCCGTGTGGCGCAGTGAAGACACTGGGTTGTGCCACCGTGTTCTTCCTTCAGTGCAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CCA 90 bp | TCCCACCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTTGCTaGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTCATG | + |
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Preference number: 5 (lower is better) Translates to: SHPLYERPRRHLGPC*TTTALPQCAQSTLM Trigger: CATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000407019.6 |
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| CDS TCA 90 bp | CTCGCTCAGAACCGTCAGCCCTCTCAACACTGTCCGTCTTTGCACTaGAGGAAGAACACGGTGGCACAACCCAGTGTCTTCACTGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: LAQNRQPSQHCPSLH*RKNTVAQPSVFTAP Trigger: TGGCGCAGTGAAGACACTGGGTTGTGCCACCGTGTTCTTCCTTCAGTGCAAAGACGGACAGTGTTGAGAGGGCTGACGGTTCTGAGCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CCA 90 bp | CCACACGGACAAAGGACACCTCTGTCACAGGCCGGCACAGCTCCCTaGGCAAAAGTGACACGACCATGTTATTACTCCCTAGTCAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: PHGQRTPLSQAGTAP*AKVTRPCYYSLVKP Trigger: GGGCTTGACTAGGGAGTAATAACATGGTCGTGTCACTTTTGCCCAGGGAGCTGTGCCGGCCTGTGACAGAGGTGTCCTTTGTCCGTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CCA 90 bp | AGCCCTCTCAACACTGTCCGTCTTTGCACTGAAGGAAGAACACGGTaGCACAACCCAGTGTCTTCACTGCGCCACACGGACAAAGGACAC | + |
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Preference number: 5 (lower is better) Translates to: SPLNTVRLCTEGRTR*HNPVSSLRHTDKGH Trigger: GTGTCCTTTGTCCGTGTGGCGCAGTGAAGACACTGGGTTGTGCCACCGTGTTCTTCCTTCAGTGCAAAGACGGACAGTGTTGAGAGGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CCA 90 bp | ATACATCTAAGACAGGGAGCCAACAGGACAGCACAAAATCAGGACTaGTTCCCTGAGAACTGGGAGGCCTCGGGGAGCACTTGCCCTCAC | + |
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Preference number: 5 (lower is better) Translates to: IHLRQGANRTAQNQD*FPENWEASGSTCPH Trigger: GTGAGGGCAAGTGCTCCCCGAGGCCTCCCAGTTCTCAGGGAACCAGTCCTGATTTTGTGCTGTCCTGTTGGCTCCCTGTCTTAGATGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS-3UTR CAA 90 bp | CTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACTCATGTCCACACTGAGGCACCTAGGACCTaGCTGGACAACCACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: LDNHCSSTVRSKHTHVHTEAPRT*LDNHCS Trigger: AGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTC...AGTGTGGACATGAGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS-3UTR CAA 90 bp | ACTCATGTCCACACTTCTGATGTCCACGTCAGAAAGCTGCTGAATATCTTCGGCGAGGCACCTAGGACCTaGCTGGACAACCACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: THVHTSDVHVRKLLNIFGEAPRT*LDNHCS Trigger: AGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTC...GCCGAAGATATTCAGCAGCTTTCTGACGTGGACATCAGAAGTGTGGACATGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419387.5 ENST00000434760.5 |
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| CDS GCA 90 bp | ACGACCATGTTATTACTCCCTAGTCAAGCCCACGGGAAAGAAAAATaGCTCCCTGGAGTTTCTGCAACACAGCCCCCTGTTCTCTACCAC | + |
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Preference number: 5 (lower is better) Translates to: TTMLLLPSQAHGKEK*LPGVSATQPPVLYH Trigger: GTGGTAGAGAACAGGGGGCTGTGTTGCAGAAACTCCAGGGAGGCATTTTTCTTTCCCGTGGGCTTGACTAGGGAGTAATAACATGGTCGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS TCA 90 bp | TCATTGCTCCCAGCGGAGGGATTGCTGTGCAACCCAGAAATCAAATaGGTATTTAATAGCAAGAGCTGTAAGGGGGCACTCACTTCAAAT | + |
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Preference number: 5 (lower is better) Translates to: SLLPAEGLLCNPEIK*VFNSKSCKGALTSN Trigger: ATTTGAAGTGAGTGCCCCCTTACAGCTCTTGCTATTAAATACTCATTTGATTTCTGGGTTGCACAGCAATCCCTCCGCTGGGAGCAATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000497960.5 |
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| CDS TCA 90 bp | AGCACACTCATGTCCACACTTCTGATGTCCACGTCAGAAAGCTGCTaGATATCTTCGGCTTTAGTTTATAGCCCTTCTTTTACCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: STLMSTLLMSTSESC*ISSALVYSPSFTLF Trigger: GAAGAGGGTAAAAGAAGGGCTATAAACTAAAGCCGAAGATATTCAGCAGCTTTCTGACGTGGACATCAGAAGTGTGGACATGAGTGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000396096.6 ENST00000407019.6 ENST00000417702.5 ENST00000419387.5 ENST00000434760.5 ENST00000461194.5 ENST00000484186.5 |
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| CDS TCA 90 bp | CAAGACTCTCAGAAGATCCTTGCGTTTTCCTTTCTTCCTCCAATCTaGTGCCACTTCGCCCACCTCTGTATTGCTTTGCTCATTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: QDSQKILAFSFLPPI*CHFAHLCIALLIFL Trigger: AAGAAAAATGAGCAAAGCAATACAGAGGTGGGCGAAGTGGCATCAGATTGGAGGAAGAAAGGAAAACGCAAGGATCTTCTGAGAGTCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000486184.1 ENST00000497960.5 |
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| CDS TCA 90 bp | CTCCACCAAAAAGCAATTCTAAGAAAAACAACTGTGATGCTCAGATaGTTAGGTCACACGACTGTCCGTCTTATCCCTCCAATCTCCCGA | + |
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Preference number: 5 (lower is better) Translates to: LHQKAILRKTTVMLR*LGHTTVRLIPPISR Trigger: TCGGGAGATTGGAGGGATAAGACGGACAGTCGTGTGACCTAATCATCTGAGCATCACAGTTGTTTTTCTTAGAATTGCTTTTTGGTGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000493456.5 |
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| CDS TCA 90 bp | TATAGCTCCACCAAAGGAGTCTGTAATATGCTAAACATTAAATGCTaGAATAACTTAATACATCTAAGACAGGGAGCCAACAGGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: YSSTKGVCNMLNIKC*NNLIHLRQGANRTA Trigger: TGCTGTCCTGTTGGCTCCCTGTCTTAGATGTATTAAGTTATTTCAGCATTTAATGTTTAGCATATTACAGACTCCTTTGGTGGAGCTATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS GCA 72 bp | GTTTCTGCAACACAGCCCCCTGTTCTCTACCACTACTaGCCGCTCCACCGCAGGCCTGCCCCGTCTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: VSATQPPVLYHY*PLHRRPAPSSS Trigger: GGAGGAAGACGGGGCAGGCCTGCGGTGGAGCGGGCAGTAGTGGTAGAGAACAGGGGGCTGTGTTGCAGAAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CAA 90 bp | ATGTTCCCACCCACTGTACGAAAGGCCACGGAGGCACCTAGGACCTaGCTGGACAACCACTGCTCTTCCACAGTGCGCTCAAAGCACACT | + |
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Preference number: 6 (lower is better) Translates to: MFPPTVRKATEAPRT*LDNHCSSTVRSKHT Trigger: AGTGTGCTTTGAGCGCACTGTGGAAGAGCAGTGGTTGTCCAGCAAGGTCCTAGGTGCCTCCGTGGCCTTTCGTACAGTGGGTGGGAACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000407019.6 |
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| CDS CCA 72 bp | AACACTGTCCGTCTTTGCACTGAAGGAAGAACACGGTaGCACAACCCAGTGTCTTCACTGCGCCACACGGAC | + |
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Preference number: 6 (lower is better) Translates to: NTVRLCTEGRTR*HNPVSSLRHTD Trigger: GTCCGTGTGGCGCAGTGAAGACACTGGGTTGTGCCACCGTGTTCTTCCTTCAGTGCAAAGACGGACAGTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS TCA 72 bp | AACCGTCAGCCCTCTCAACACTGTCCGTCTTTGCACTaGAGGAAGAACACGGTGGCACAACCCAGTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: NRQPSQHCPSLH*RKNTVAQPSVF Trigger: GAAGACACTGGGTTGTGCCACCGTGTTCTTCCTTCAGTGCAAAGACGGACAGTGTTGAGAGGGCTGACGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CCA 72 bp | CAAAGGACACCTCTGTCACAGGCCGGCACAGCTCCCTaGGCAAAAGTGACACGACCATGTTATTACTCCCTA | + |
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Preference number: 6 (lower is better) Translates to: QRTPLSQAGTAP*AKVTRPCYYSL Trigger: TAGGGAGTAATAACATGGTCGTGTCACTTTTGCCCAGGGAGCTGTGCCGGCCTGTGACAGAGGTGTCCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS CAA 90 bp | CCAAGGCCTCAATCGCAGGGAGCAGACAAGACTCTCAGAAGATCCTaGCGTTTTCCTTTCTTCCTCCAATCTGATGCCACTTCGCCCACC | + |
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Preference number: 6 (lower is better) Translates to: PRPQSQGADKTLRRS*RFPFFLQSDATSPT Trigger: GGTGGGCGAAGTGGCATCAGATTGGAGGAAGAAAGGAAAACGCAAGGATCTTCTGAGAGTCTTGTCTGCTCCCTGCGATTGAGGCCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000497960.5 |
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| CDS CAA 90 bp | ACAAGGCCTCAATCGCAGGGAGCAGACAAGACTCTCAGAAGATCCTaGCGTTTTCCTTTCTTCCTCCAATCTGATGCCACTTCGCCCACC | + |
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Preference number: 6 (lower is better) Translates to: TRPQSQGADKTLRRS*RFPFFLQSDATSPT Trigger: GGTGGGCGAAGTGGCATCAGATTGGAGGAAGAAAGGAAAACGCAAGGATCTTCTGAGAGTCTTGTCTGCTCCCTGCGATTGAGGCCTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486184.1 |
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| CDS GCA 72 bp | TTATTACTCCCTAGTCAAGCCCACGGGAAAGAAAAATaGCTCCCTGGAGTTTCTGCAACACAGCCCCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: LLLPSQAHGKEK*LPGVSATQPPV Trigger: AACAGGGGGCTGTGTTGCAGAAACTCCAGGGAGGCATTTTTCTTTCCCGTGGGCTTGACTAGGGAGTAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000469163.1 |
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| CDS TCA 72 bp | CCAGCGGAGGGATTGCTGTGCAACCCAGAAATCAAATaGGTATTTAATAGCAAGAGCTGTAAGGGGGCACTC | + |
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Preference number: 6 (lower is better) Translates to: PAEGLLCNPEIK*VFNSKSCKGAL Trigger: GAGTGCCCCCTTACAGCTCTTGCTATTAAATACTCATTTGATTTCTGGGTTGCACAGCAATCCCTCCGCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000497960.5 |
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| CDS GCA 72 bp | CAGGGATCTTTGTTTTGTTTACAGATATACTCCAAATaGCCCAACAGTGCCCAGCTCAAACAGCAGGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: QGSLFCLQIYSK*PNSAQLKQQVS Trigger: GGACACCTGCTGTTTGAGCTGGGCACTGTTGGGGCATTTGGAGTATATCTGTAAACAAAACAAAGATCCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000432340.1 ENST00000445721.5 ENST00000461194.5 |
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| CDS GCA 72 bp | GTTTTGTTTACAGATATACTCCAAATGCCCCAACAGTaGCCAGCTCAAACAGCAGGTGTCCTGTCTGTCATT | + |
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Preference number: 6 (lower is better) Translates to: VLFTDILQMPQQ*PAQTAGVLSVI Trigger: AATGACAGACAGGACACCTGCTGTTTGAGCTGGGCACTGTTGGGGCATTTGGAGTATATCTGTAAACAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000432340.1 ENST00000445721.5 ENST00000461194.5 |
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| CDS CCA 72 bp | ACAGCAGGTGTCCTGTCTGTCATTAGATCAGTGAGCTaGGGAAGTATTTCCCCAGTGAGCATAAAGTATTTC | + |
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Preference number: 6 (lower is better) Translates to: TAGVLSVIRSVS*GSISPVSIKYF Trigger: GAAATACTTTATGCTCACTGGGGAAATACTTCCCCAGCTCACTGATCTAATGACAGACAGGACACCTGCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000432340.1 ENST00000445721.5 ENST00000461194.5 |
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| CDS CAA 90 bp | TTTCCTTTCTTCCTCCAATCTGATGCCACTTCGCCCACCTCTGTATaGCTTTGCTCATTTTTCTTCTCCAGATTGTCACTCAACTTGAAT | + |
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Preference number: 6 (lower is better) Translates to: FPFFLQSDATSPTSV*LCSFFFSRLSLNLN Trigger: ATTCAAGTTGAGTGACAATCTGGAGAAGAAAAATGAGCAAAGCAATACAGAGGTGGGCGAAGTGGCATCAGATTGGAGGAAGAAAGGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000486184.1 ENST00000497960.5 |
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| CDS TCA 72 bp | ATGTCCACACTTCTGATGTCCACGTCAGAAAGCTGCTaGATATCTTCGGCTTTAGTTTATAGCCCTTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: MSTLLMSTSESC*ISSALVYSPSF Trigger: AAAAGAAGGGCTATAAACTAAAGCCGAAGATATTCAGCAGCTTTCTGACGTGGACATCAGAAGTGTGGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000396096.6 ENST00000407019.6 ENST00000417702.5 ENST00000419387.5 ENST00000434760.5 ENST00000461194.5 ENST00000484186.5 |
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| CDS CAA 90 bp | ATCTCCCATGACCTACATCAAAGAATAAGTATTTTAAGAAAGCATTaGTTGATATCATTGCTCCCAGCGGAGGGATTGCTGTGCAACCCA | + |
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Preference number: 6 (lower is better) Translates to: ISHDLHQRISILRKH*LISLLPAEGLLCNP Trigger: TGGGTTGCACAGCAATCCCTCCGCTGGGAGCAATGATATCAACAAATGCTTTCTTAAAATACTTATTCTTTGATGTAGGTCATGGGAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000497960.5 |
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| CDS CAA 90 bp | TTTCGAACCAAATCAGTATATAACCAAAACGCAGGGATCTTTGTTTaGTTTACAGATATACTCCAAATGCCCCAACAGTGCCCAGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: FRTKSVYNQNAGIFV*FTDILQMPQQCPAQ Trigger: TTGAGCTGGGCACTGTTGGGGCATTTGGAGTATATCTGTAAACAAAACAAAGATCCCTGCGTTTTGGTTATATACTGATTTGGTTCGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000432340.1 ENST00000445721.5 ENST00000461194.5 |
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| CDS CAA 72 bp | AAATCAGTATATAACCAAAACGCAGGGATCTTTGTTTaGTTTACAGATATACTCCAAATGCCCCAACAGTGC | + |
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Preference number: 6 (lower is better) Translates to: KSVYNQNAGIFV*FTDILQMPQQC Trigger: GCACTGTTGGGGCATTTGGAGTATATCTGTAAACAAAACAAAGATCCCTGCGTTTTGGTTATATACTGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000432340.1 ENST00000445721.5 ENST00000461194.5 |
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