Pregenerated sensors for NUP35 (Homo sapiens)
Ensembl gene IDs: ENSG00000163002Ensembl transcript IDs: ENST00000442895.6, ENST00000452137.1, ENST00000472844.1, ENST00000479162.5, ENST00000497330.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGTTGAACCCTAACGCGGGCCCCTaGGGTTCCACTGCAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: AARAYIPIGQLRQEDWLNPNAGP*GSTAKA Trigger: AGCCTTTGCAGTGGAACCTCAGGGGCCCGCGTTAGG...GTTCAACCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS-3UTR CCA 90 bp | GGCATAGCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGCGCTGCACTCTAGCCTaGGCAACTGATCAGGACCCT | + |
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Preference number: 4 (lower is better) Translates to: GIAARAYIPIGQLRQEDWRCTLA*ATDQDP Trigger: AGGGTCCTGATCAGTTGCCCAGGCTAGAGTGCAGCG...CCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGCTATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS-3UTR TCA 90 bp | GCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGTTGAACAAGGCTGCAGAGTTATaGCTGTGCCGCTGCACTCTA | + |
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Preference number: 4 (lower is better) Translates to: AARAYIPIGQLRQEDWLNKAAEL*LCRCTL Trigger: TAGAGTGCAGCGGCACAGTCATAACTCTGCAGCCTT...GTTCAACCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS-3UTR TCA 90 bp | GCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGTTGAACCTTTGGAGATGTGGGTaGACCCAGCATCATTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: AARAYIPIGQLRQEDWLNLWRCG*TQHHWF Trigger: GAACCAATGATGCTGGGTTCACCCACATCTCCAAAG...GTTCAACCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS-3UTR GCA 90 bp | GCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGTTGAACTTTGAGAGGTCAAGGTaGAAGGATCACCTGAATCCG | + |
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Preference number: 4 (lower is better) Translates to: AARAYIPIGQLRQEDWLNFERSR*KDHLNP Trigger: CGGATTCAGGTGATCCTTGCACCTTGACCTCTCAAA...GTTCAACCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS-3UTR TCA 90 bp | GCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGTTGAACAGGACTCTGCATTACTaGAATGTTTGGCAACTTAAC | + |
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Preference number: 4 (lower is better) Translates to: AARAYIPIGQLRQEDWLNRTLHY*NVWQLN Trigger: GTTAAGTTGCCAAACATTTCAGTAATGCAGAGTCCT...GTTCAACCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS TCA 90 bp | GGCTGCAGAGTTATGACTGTGCCGCTGCACTCTAGCCTGGGCAACTaGTCAGGACCCTGTTGGGGACCCTGTCTTCTTGAAGTTAAAGGT | + |
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Preference number: 5 (lower is better) Translates to: GCRVMTVPLHSSLGN*SGPCWGPCLLEVKG Trigger: ACCTTTAACTTCAAGAAGACAGGGTCCCCAACAGGGTCCTGATCAGTTGCCCAGGCTAGAGTGCAGCGGCACAGTCATAACTCTGCAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000452137.1 ENST00000497330.5 |
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| CDS-3UTR CAA 90 bp | GGCATAGCAGCACGTGCCTATATCCCAATAGGACAGTTGAGGCAGGAGGATTGGATCCCAATAGGACAGTaGAGGCAGGAGGATTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GIAARAYIPIGQLRQEDWIPIGQ*RQEDWL Trigger: CAACCAATCCTCCTGCCTCAACTGTCCTATTGGGAT...CCAATCCTCCTGCCTCAACTGTCCTATTGGGATATAGGCACGTGCTGCTATGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452137.1 |
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| CDS GCA 90 bp | GCTAACAGGCCTCTCACTCCAAGGGAGGAATCAAGGGAAAAGGGATaGAAGATGCCAGAAGTATGCCAACATGTAAAACCCTACGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: ANRPLTPREESREKG*KMPEVCQHVKPYVQ Trigger: TTGGACGTAGGGTTTTACATGTTGGCATACTTCTGGCATCTTGCATCCCTTTTCCCTTGATTCCTCCCTTGGAGTGAGAGGCCTGTTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS CCA 90 bp | TACGTCCAAGGTCAAATGGGGCACTTGTCCTCCAAGATGCCCGCTTaGCCCTCTTCCAAGTGTACTTTACTTTCTTTTCATTCCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: YVQGQMGHLSSKMPA*PSSKCTLLSFHSSS Trigger: AGAGGAGGAATGAAAAGAAAGTAAAGTACACTTGGAAGAGGGCCAAGCGGGCATCTTGGAGGACAAGTGCCCCATTTGACCTTGGACGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS CAA 72 bp | CATGTAAAACCCTACGTCCAAGGTCAAATGGGGCACTaGTCCTCCAAGATGCCCGCTTGGCCCTCTTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: HVKPYVQGQMGH*SSKMPAWPSSK Trigger: CTTGGAAGAGGGCCAAGCGGGCATCTTGGAGGACAAGTGCCCCATTTGACCTTGGACGTAGGGTTTTACATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS GCA 72 bp | ACGTCCAAGGTCAAATGGGGCACTTGTCCTCCAAGATaGCCGCTTGGCCCTCTTCCAAGTGTACTTTACTTT | + |
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Preference number: 6 (lower is better) Translates to: TSKVKWGTCPPR*PLGPLPSVLYF Trigger: AAAGTAAAGTACACTTGGAAGAGGGCCAAGCGGGCATCTTGGAGGACAAGTGCCCCATTTGACCTTGGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS CAA 90 bp | CTACGTCCAAGGTCAAATGGGGCACTTGTCCTCCAAGATGCCCGCTaGGCCCTCTTCCAAGTGTACTTTACTTTCTTTTCATTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LRPRSNGALVLQDAR*ALFQVYFTFFSFLL Trigger: GAGGAGGAATGAAAAGAAAGTAAAGTACACTTGGAAGAGGGCCAAGCGGGCATCTTGGAGGACAAGTGCCCCATTTGACCTTGGACGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS GCA 72 bp | CCTCTCACTCCAAGGGAGGAATCAAGGGAAAAGGGATaGAAGATGCCAGAAGTATGCCAACATGTAAAACCC | + |
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Preference number: 6 (lower is better) Translates to: PLTPREESREKG*KMPEVCQHVKP Trigger: GGGTTTTACATGTTGGCATACTTCTGGCATCTTGCATCCCTTTTCCCTTGATTCCTCCCTTGGAGTGAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS CCA 72 bp | GGTCAAATGGGGCACTTGTCCTCCAAGATGCCCGCTTaGCCCTCTTCCAAGTGTACTTTACTTTCTTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GQMGHLSSKMPA*PSSKCTLLSFH Trigger: ATGAAAAGAAAGTAAAGTACACTTGGAAGAGGGCCAAGCGGGCATCTTGGAGGACAAGTGCCCCATTTGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS CAA 72 bp | AGGTCAAATGGGGCACTTGTCCTCCAAGATGCCCGCTaGGCCCTCTTCCAAGTGTACTTTACTTTCTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RSNGALVLQDAR*ALFQVYFTFFS Trigger: TGAAAAGAAAGTAAAGTACACTTGGAAGAGGGCCAAGCGGGCATCTTGGAGGACAAGTGCCCCATTTGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS GCA 72 bp | CCTGCTCTAAAACTTGTCTTGGTCTCTTCTGCCTTATaGCCCTTAGTCAGATTCTCTCCTGAGGACACAAGA | + |
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Preference number: 6 (lower is better) Translates to: PALKLVLVSSAL*PLVRFSPEDTR Trigger: TCTTGTGTCCTCAGGAGAGAATCTGACTAAGGGGCATAAGGCAGAAGAGACCAAGACAAGTTTTAGAGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000442895.6 ENST00000472844.1 |
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| CDS CCA 72 bp | TCATGTACTGTGTGTTTCAGGACCTGTTTCTGCAGCTaGTTAAGTTCGAACACTTGGCTAGTCAGTAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SCTVCFRTCFCS*LSSNTWLVSRR Trigger: TCTCCTACTGACTAGCCAAGTGTTCGAACTTAACCAGCTGCAGAAACAGGTCCTGAAACACACAGTACATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000479162.5 |
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| CDS GCA 72 bp | AGTGTTTCATGTACTGTGTGTTTCAGGACCTGTTTCTaGAGCTGGTTAAGTTCGAACACTTGGCTAGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SVSCTVCFRTCF*SWLSSNTWLVS Trigger: ACTGACTAGCCAAGTGTTCGAACTTAACCAGCTGCAGAAACAGGTCCTGAAACACACAGTACATGAAACACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000479162.5 |
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| CDS CCA 72 bp | GCAGACCCGTATGGATTTGCCGCTGACAACATATTTTaGTGCTGTGTAATTTGGATTCCCACCACTTTAGTA | + |
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Preference number: 6 (lower is better) Translates to: ADPYGFAADNIF*CCVIWIPTTLV Trigger: TACTAAAGTGGTGGGAATCCAAATTACACAGCACCAAAATATGTTGTCAGCGGCAAATCCATACGGGTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000442895.6 ENST00000472844.1 |
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| CDS CAA 72 bp | TTTCAACAAACCTTCACTCCTGCTCTAAAACTTGTCTaGGTCTCTTCTGCCTTATGCCCCTTAGTCAGATTC | + |
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Preference number: 6 (lower is better) Translates to: FQQTFTPALKLV*VSSALCPLVRF Trigger: GAATCTGACTAAGGGGCATAAGGCAGAAGAGACCAAGACAAGTTTTAGAGCAGGAGTGAAGGTTTGTTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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| CDS CAA 90 bp | TATACTATATACATTGTCACCTTCACTCCTGCTCTAAAACTTGTCTaGGTCTCTTCTGCCTTATGCCCCTTAGTCAGATTCTCTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: YTIYIVTFTPALKLV*VSSALCPLVRFSPE Trigger: CTCAGGAGAGAATCTGACTAAGGGGCATAAGGCAGAAGAGACCAAGACAAGTTTTAGAGCAGGAGTGAAGGTGACAATGTATATAGTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000442895.6 |
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| CDS GCA 72 bp | TTCCTCCTCTCAAGTTTTTCAACAAACCTTCACTCCTaGTCTAAAACTTGTCTTGGTCTCTTCTGCCTTATG | + |
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Preference number: 6 (lower is better) Translates to: FLLSSFSTNLHS*SKTCLGLFCLM Trigger: CATAAGGCAGAAGAGACCAAGACAAGTTTTAGAGCAGGAGTGAAGGTTTGTTGAAAAACTTGAGAGGAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000472844.1 |
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