Pregenerated sensors for NUDC (Homo sapiens)
Ensembl gene IDs: ENSG00000090273Ensembl transcript IDs: ENST00000321265.10, ENST00000435827.6, ENST00000452707.1, ENST00000484772.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCTAGGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGGCCGTAAGAGGCCTGTaGCCCAGAGAAAGGCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: PRSHGRIWARSQTPSSQQAVRGL*PRERPE Trigger: CTCTGGCCTTTCTCTGGGGCACAGGCCTCTTACGGC...CTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| 3UTR CCA 72 bp | GGGGCAAGGATGTGCCCTAGGTCACATGGCAGAATCTaGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: GARMCPRSHGRI*ARSQTPSSQQQ Trigger: CTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGGGCACATCCTTGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR GCA 90 bp | CCTAGGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGCACGTCCCGGAGCTCTaGACTCTAGTCCCGCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PRSHGRIWARSQTPSSQQHVPEL*TLVPRS Trigger: AGAGCGCGGGACTAGAGTGCAGAGCTCCGGGACGTG...CTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR GCA 90 bp | CCTAGGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGGTGTTCACAAGCTCCTaGACGCCGCCCTCGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PRSHGRIWARSQTPSSQQVFTSS*TPPSCC Trigger: GCAGCACGAGGGCGGCGTGCAGGAGCTTGTGAACAC...CTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR GCA 90 bp | GGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGCAGCGCCGTAAGAGGCCTGTaGCCCAGAGAAAGGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GHMAESGLEAKLPVPSSSAVRGL*PRERPE Trigger: CTCTGGCCTTTCTCTGGGGCACAGGCCTCTTACGGC...GCTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR TCA 90 bp | GGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGCAGCACTCCTGACATCAGGTaGTCTGCTCCCCTCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GHMAESGLEAKLPVPSSSTPDIR*SAPLSL Trigger: GAGGCTGAGGGGAGCAGATCACCTGATGTCAGGAGT...GCTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR TCA 90 bp | CCTAGGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGCTGGTCTCAAACTCCTaGCATCAGGTGATCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PRSHGRIWARSQTPSSQQLVSNS*HQVICS Trigger: GGAGCAGATCACCTGATGTCAGGAGTTTGAGACCAG...CTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR TCA 90 bp | CCTAGGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGTCACCCATGCTGGAGTaGAGTAGTGCAATCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: PRSHGRIWARSQTPSSQQSPMLE*SSAISA Trigger: AGCCGAGATTGCACTACTTCACTCCAGCATGGGTGA...CTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR GCA 90 bp | CCTAGGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGTCTTCCTCAGTATCCTaGTTCCCTGGGGAGTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: PRSHGRIWARSQTPSSQQSSSVS*FPGESR Trigger: CCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGA...CTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR CCA 90 bp | GGTCACATGGCAGAATCTGGGCTAGAAGCCAAACTCCCAGTTCCCAGCAGCAGCGGACACAGAAGGAGCTaGGCAAATCGTTTTAATGTG | + |
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Preference number: 4 (lower is better) Translates to: GHMAESGLEAKLPVPSSSGHRRS*ANRFNV Trigger: CACATTAAAACGATTTGCCCAGCTCCTTCTGTGTCC...GCTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR CCA 90 bp | AAGGCCAGAGGCAAGAGAGGACACAGAAGGAGCTGGGCAAATCGTTTTAATGTGCCATGTTGGCCAAGCTaGTCTCAAACTCCTGACATC | + |
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Preference number: 4 (lower is better) Translates to: KARGKRGHRRSWANRFNVPCWPS*SQTPDI Trigger: GATGTCAGGAGTTTGAGACCAGCTTGGCCAACATGG...CACATTAAAACGATTTGCCCAGCTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS-3UTR GCA 90 bp | AAGGCCAGAGGCAAGAGAGGACACAGAAGGAGCTGGGCAAATCGTTTTAATGTGAGTCTCTGTCACCCATaGTGGAGTGAAGTAGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: KARGKRGHRRSWANRFNVSLCHP*WSEVVQ Trigger: TTGCACTACTTCACTCCAGCATGGGTGACAGAGACT...CACATTAAAACGATTTGCCCAGCTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321265.10 |
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| CDS TCA 90 bp | GAATCGGTGAAGCTCTGGAAACAACGAGGCCCCTCACCTTCCTGCTaGAGCTCCCCCAACCAGCCAGGGCTCACCTTGGAATTCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: ESVKLWKQRGPSPSC*SSPNQPGLTLEFSG Trigger: CCCTGAGAATTCCAAGGTGAGCCCTGGCTGGTTGGGGGAGCTTCAGCAGGAAGGTGAGGGGCCTCGTTGTTTCCAGAGCTTCACCGATTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000484772.1 |
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| CDS CCA 90 bp | CTCTCCCATCCACATCCTGCACCTGAGACCCTTGCAGGCCTACACTaGATCCAGAGGTACAAGACTGTGCCCTTCCTGCAGCTAGGGGAG | + |
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Preference number: 5 (lower is better) Translates to: LSHPHPAPETLAGLH*IQRYKTVPFLQLGE Trigger: CTCCCCTAGCTGCAGGAAGGGCACAGTCTTGTACCTCTGGATCCAGTGTAGGCCTGCAAGGGTCTCAGGTGCAGGATGTGGATGGGAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000484772.1 |
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| CDS CCA 90 bp | CCGCTCCCCTACCACACACATTCGACGGCTCGCCCCAAGCCTTGGTaGATCCAAATCACGATATTTGCGACGGTTCTTACTAAGGGATGC | + |
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Preference number: 5 (lower is better) Translates to: PLPYHTHSTARPKPW*IQITIFATVLTKGC Trigger: GCATCCCTTAGTAAGAACCGTCGCAAATATCGTGATTTGGATCCACCAAGGCTTGGGGCGAGCCGTCGAATGTGTGTGGTAGGGGAGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS CCA 90 bp | AGCCCGCTCCCCTACCACACACATTCGACGGCTCGCCCCAAGCCTTaGTGGATCCAAATCACGATATTTGCGACGGTTCTTACTAAGGGA | + |
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Preference number: 5 (lower is better) Translates to: SPLPYHTHSTARPKP*WIQITIFATVLTKG Trigger: TCCCTTAGTAAGAACCGTCGCAAATATCGTGATTTGGATCCACCAAGGCTTGGGGCGAGCCGTCGAATGTGTGTGGTAGGGGAGCGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS GCA 90 bp | TGGTGGATCCAAATCACGATATTTGCGACGGTTCTTACTAAGGGATaGTCCTTGGAAGCCGCCATCAAAGTGGAAACGGGGGTGGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: WWIQITIFATVLTKG*SLEAAIKVETGVGA Trigger: TGCCCCCACCCCCGTTTCCACTTTGATGGCGGCTTCCAAGGAGCATCCCTTAGTAAGAACCGTCGCAAATATCGTGATTTGGATCCACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS TCA 90 bp | CACTCCCGAATTGAAACAGACAAGTTCACTGCCATTTCTGTAGTTTaGGATCATTCACTTCCCCCATTCCTTGAAGCCAGCCTATTCTCA | + |
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Preference number: 5 (lower is better) Translates to: HSRIETDKFTAISVV*DHSLPPFLEASLFS Trigger: TGAGAATAGGCTGGCTTCAAGGAATGGGGGAAGTGAATGATCTCAAACTACAGAAATGGCAGTGAACTTGTCTGTTTCAATTCGGGAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000435827.6 |
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| CDS TCA 72 bp | AAGCTCTGGAAACAACGAGGCCCCTCACCTTCCTGCTaGAGCTCCCCCAACCAGCCAGGGCTCACCTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: KLWKQRGPSPSC*SSPNQPGLTLE Trigger: TTCCAAGGTGAGCCCTGGCTGGTTGGGGGAGCTTCAGCAGGAAGGTGAGGGGCCTCGTTGTTTCCAGAGCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000484772.1 |
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| CDS CCA 72 bp | CCACATCCTGCACCTGAGACCCTTGCAGGCCTACACTaGATCCAGAGGTACAAGACTGTGCCCTTCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: PHPAPETLAGLH*IQRYKTVPFLQ Trigger: CTGCAGGAAGGGCACAGTCTTGTACCTCTGGATCCAGTGTAGGCCTGCAAGGGTCTCAGGTGCAGGATGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000484772.1 |
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| CDS CAA 72 bp | TTCGGGAAGCTGGTAGTGAGCGGTATCCCCTCCGTGTaGCGCTCGGCCCATTTACGGAGCTATTTTAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: FGKLVVSGIPSV*RSAHLRSYFSQ Trigger: CTGGCTAAAATAGCTCCGTAAATGGGCCGAGCGCAACACGGAGGGGATACCGCTCACTACCAGCTTCCCGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435827.6 |
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| CDS CCA 72 bp | CGATATTTGCGACGGTTCTTACTAAGGGATGCTCCTTaGAAGCCGCCATCAAAGTGGAAACGGGGGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: RYLRRFLLRDAP*KPPSKWKRGWG Trigger: CCCCCACCCCCGTTTCCACTTTGATGGCGGCTTCCAAGGAGCATCCCTTAGTAAGAACCGTCGCAAATATCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS CAA 72 bp | CCCCTACCACACACATTCGACGGCTCGCCCCAAGCCTaGGTGGATCCAAATCACGATATTTGCGACGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PLPHTFDGSPQA*VDPNHDICDGS Trigger: AGAACCGTCGCAAATATCGTGATTTGGATCCACCAAGGCTTGGGGCGAGCCGTCGAATGTGTGTGGTAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS CAA 90 bp | AAGCCAAAGTTCGGGAAGCTGGTAGTGAGCGGTATCCCCTCCGTGTaGCGCTCGGCCCATTTACGGAGCTATTTTAGCCAGTTCCGAGAA | + |
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Preference number: 6 (lower is better) Translates to: KPKFGKLVVSGIPSV*RSAHLRSYFSQFRE Trigger: TTCTCGGAACTGGCTAAAATAGCTCCGTAAATGGGCCGAGCGCAACACGGAGGGGATACCGCTCACTACCAGCTTCCCGAACTTTGGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435827.6 |
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| CDS CCA 72 bp | CCCTACCACACACATTCGACGGCTCGCCCCAAGCCTTaGTGGATCCAAATCACGATATTTGCGACGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PYHTHSTARPKP*WIQITIFATVL Trigger: AAGAACCGTCGCAAATATCGTGATTTGGATCCACCAAGGCTTGGGGCGAGCCGTCGAATGTGTGTGGTAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS CAA 72 bp | ACGATATTTGCGACGGTTCTTACTAAGGGATGCTCCTaGGAAGCCGCCATCAAAGTGGAAACGGGGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: TIFATVLTKGCS*EAAIKVETGVG Trigger: CCCCACCCCCGTTTCCACTTTGATGGCGGCTTCCAAGGAGCATCCCTTAGTAAGAACCGTCGCAAATATCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS CAA 90 bp | ATCCAAATCACGATATTTGCGACGGTTCTTACTAAGGGATGCTCCTaGGAAGCCGCCATCAAAGTGGAAACGGGGGTGGGGGCATATGTG | + |
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Preference number: 6 (lower is better) Translates to: IQITIFATVLTKGCS*EAAIKVETGVGAYV Trigger: CACATATGCCCCCACCCCCGTTTCCACTTTGATGGCGGCTTCCAAGGAGCATCCCTTAGTAAGAACCGTCGCAAATATCGTGATTTGGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS CCA 72 bp | TACCACACACATTCGACGGCTCGCCCCAAGCCTTGGTaGATCCAAATCACGATATTTGCGACGGTTCTTACT | + |
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Preference number: 6 (lower is better) Translates to: YHTHSTARPKPW*IQITIFATVLT Trigger: AGTAAGAACCGTCGCAAATATCGTGATTTGGATCCACCAAGGCTTGGGGCGAGCCGTCGAATGTGTGTGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS GCA 72 bp | CAAATCACGATATTTGCGACGGTTCTTACTAAGGGATaGTCCTTGGAAGCCGCCATCAAAGTGGAAACGGGG | + |
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Preference number: 6 (lower is better) Translates to: QITIFATVLTKG*SLEAAIKVETG Trigger: CCCCGTTTCCACTTTGATGGCGGCTTCCAAGGAGCATCCCTTAGTAAGAACCGTCGCAAATATCGTGATTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452707.1 |
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| CDS TCA 72 bp | AATCACAGCCAATCAGGAAGCAGCCCACTCCCGAATTaGAACAGACAAGTTCACTGCCATTTCTGTAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: NHSQSGSSPLPN*NRQVHCHFCSL Trigger: CAAACTACAGAAATGGCAGTGAACTTGTCTGTTTCAATTCGGGAGTGGGCTGCTTCCTGATTGGCTGTGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435827.6 |
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| CDS TCA 72 bp | ATTGAAACAGACAAGTTCACTGCCATTTCTGTAGTTTaGGATCATTCACTTCCCCCATTCCTTGAAGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: IETDKFTAISVV*DHSLPPFLEAS Trigger: GCTGGCTTCAAGGAATGGGGGAAGTGAATGATCTCAAACTACAGAAATGGCAGTGAACTTGTCTGTTTCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000435827.6 |
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