RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NTN4 (Homo sapiens)

Ensembl gene IDs: ENSG00000074527

Ensembl transcript IDs: ENST00000343702.9, ENST00000344911.8, ENST00000538383.5, ENST00000547980.1, ENST00000552603.1, ENST00000553059.1, ENST00000674345.1, ENST00000674466.1

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTTCCAGTTTCCTGTCTaGGGTCTTCTTGCTCTAAAG +
Preference number: 2 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLFQFPV*GLLALK
Trigger: CTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAA...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
3UTR CAA 90 bp AAGTATTCAGAGTTAAATAGCACAACTTCTTTTATATGGTCACTTTaGTCCACATGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTC +
Preference number: 2 (lower is better)
Translates to: KYSELNSTTSFIWSL*STCSGSAAASVGFL
Trigger: GAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCTATTTAACTCTGAATACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
3UTR-3UTR CAA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATAGCTGGAAGGCGTCCTaGTTAGAGGTACTGCCCTTA +
Preference number: 3 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYSWKAS*LEVLPL
Trigger: TAAGGGCAGTACCTCTAACAAGGACGCCTTCCAGCT...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
3UTR CCA 72 bp AAGTATTCAGAGTTAAATAGCACAACTTCTTTTATATaGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCT +
Preference number: 3 (lower is better)
Translates to: KYSELNSTTSFI*SLLSTCSGSAA
Trigger: AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCTATTTAACTCTGAATACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTCTCTGGGCTGCGGGATaGAGCGCCGCCGTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLLWAAG*SAAVLG
Trigger: CCCGAGGACGGCGGCGCTTCATCCCGCAGCCCAGAG...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS-3UTR GCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTCCCACCTCTTCTGGCTaGCCCGGCTCCGTCCCGTCC +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAPTSSG*PGSVPS
Trigger: GGACGGGACGGAGCCGGGGCAGCCAGAAGAGGTGGG...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCCCACCTCTTCTGGCTaGCCCGGCTCCGTCCCGTCC +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCPTSSG*PGSVPS
Trigger: GGACGGGACGGAGCCGGGGCAGCCAGAAGAGGTGGG...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTCCCCGCACAGTCACATaGTCGACAGCCATAGTCTCC +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSPRTVT*STAIVS
Trigger: GGAGACTATGGCTGTCGACCATGTGACTGTGCGGGG...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAGCGGTCCAGCACCATaGCAGCCGGCCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDSGPAP*QPAWGT
Trigger: AGTCCCCCAGGCCGGCTGCCATGGTGCTGGACCGCT...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTAGGTTCTGCACTCGTTaGGAGCCCCCGTTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSRFCTR*EPPFCH
Trigger: ATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCT...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTCATTCTGACCGCAGGTaGTGTCTGCCCAGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSHSDRR*CLPRVF
Trigger: GAAAACTCTGGGCAGACACCACCTGCGGTCAGAATG...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTTTGTCACATTTGGGCTaGCGACAAGTCAGATCCGTG +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSLSHLG*RQVRSV
Trigger: CACGGATCTGACTTGTCGGCAGCCCAAATGTGACAA...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTGATAGAAGCCTGGCTTaGACCTCTGGCAATACTGTC +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSDRSLA*TSGNTV
Trigger: GACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATC...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGAGCGGTCCAGCACCATaGCAGCCGGCCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVSGPAP*QPAWGT
Trigger: AGTCCCCCAGGCCGGCTGCCATGGTGCTGGACCGCT...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTGCTGCTCCTGAACTTTaGCACTGTAAGGGTTCTCTG +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSAAPEL*HCKGSL
Trigger: CAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGC...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCAGTCCCACCTCTTCTaGCTGCCCCGGCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVQSHLF*LPRLRP
Trigger: GGGACGGAGCCGGGGCAGCCAGAAGAGGTGGGACTG...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344911.8
CDS-3UTR TCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTGGCAGGAAGGACAGCTaGTCCTACTGGATGGCAGGA +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAGRKDS*SYWMAG
Trigger: TCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCC...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATCTGCGGCCACCACCGTaGAGCCCCAGAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYLRPPP*SPRAAA
Trigger: TGCTGCTGCTCTGGGGCTGCACGGTGGTGGCCGCAG...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS-3UTR GCA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTACCGCAGGTGGTGTCTaGCCAGAGTTTTCGCCCCAA +
Preference number: 4 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLTAGGV*PEFSPQ
Trigger: TTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGT...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTGAGGATAGGCAGCATTaGACTTGTCACATTTGGGCT +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSEDRQH*TCHIWA
Trigger: AGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTC...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTACACTTGCAGGTTCTaGACTCGTTGGGAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAYTCRF*TRWEPP
Trigger: CGGGGGCTCCCAACGAGTGCAGAACCTGCAAGTGTA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGGAGGGAACGGGGCCCTaGTTTCTTCCTCCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKEGTGP*FLPPPG
Trigger: CCCAGGAGGAGGAAGAAACCAGGGCCCCGTTCCCTC...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS-3UTR CCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAAGCGGTCCAGCACCATaGCAGCCGGCCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLSGPAP*QPAWGT
Trigger: AGTCCCCCAGGCCGGCTGCCATGGTGCTGGACCGCT...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTAGGAAACCGGAAGGATaGGTCTGCCATGGCAGATGG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAARKPEG*VCHGRW
Trigger: CCATCTGCCATGGCAGACTCATCCTTCCGGTTTCCT...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTCCGGCCTGGGGGACTTaGACATCACAATTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAPAWGT*TSQLGE
Trigger: CTCACCTAATTGTGATGTTCAAGTCCCCCAGGCCGG...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATGCAAGCATCTGGAGCTaGGAAGGGTCTCCGCAGGTC +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHASIWS*EGSPQV
Trigger: GACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGC...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCGGCAGGAAGGACAGCTaGTCCTACTGGATGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCGRKDS*SYWMAG
Trigger: TCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCC...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACGGCAGGAAGGACAGCTaGTCCTACTGGATGGCAGGA +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDGRKDS*SYWMAG
Trigger: TCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCC...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGGGAGCCCCCGTTTTaGCATCAGCTGCCTCCCATG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKWEPPF*HQLPPM
Trigger: CATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATTTTTCCCACCTCTTCTaGCTGCCCCGGCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYFSHLF*LPRLRP
Trigger: GGGACGGAGCCGGGGCAGCCAGAAGAGGTGGGAAAA...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS-3UTR CCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCCCCGCACAGTCACATaGTCGACAGCCATAGTCTCC +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCPRTVT*STAIVS
Trigger: GGAGACTATGGCTGTCGACCATGTGACTGTGCGGGG...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATAGTTCGGTAGCATTCTaGCCGCAGGTGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHSSVAF*PQVVSA
Trigger: GGCAGACACCACCTGCGGTCAGAATGCTACCGAACT...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACGCACGCGAAGGTTGGTaGTCTTCAGCTGCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDAREGW*SSAAPE
Trigger: TTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGC...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGGCAAGCATCTGGAGCTaGGAAGGGTCTCCGCAGGTC +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVASIWS*EGSPQV
Trigger: GACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGC...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGCAAGCATCTGGAGCTaGGAAGGGTCTCCGCAGGTC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIASIWS*EGSPQV
Trigger: GACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGC...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTAAGTCAGGAACTTCATaGTACCAGTCTATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSKSGTS*YQSMSV
Trigger: CACAGACATAGACTGGTATCATGAAGTTCCTGACTT...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATACTCCACTCAGTCCTaGGGCCACCACCGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLYSTQS*GHHRAA
Trigger: GGCTGCACGGTGGTGGCCGCAGGACTGAGTGGAGTA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS-3UTR GCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACTTCCCATCCGAGGGTTaGAGGCTTTTTCACAGCGGG +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDFPSEG*RLFHSG
Trigger: CCCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAA...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCTGGGAGCCCCCGTTTTaGCATCAGCTGCCTCCCATG +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIWEPPF*HQLPPM
Trigger: CATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCA...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTACACTTGCAGGTTCTaGACTCGTTGGGAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKYTCRF*TRWEPP
Trigger: CGGGGGCTCCCAACGAGTGCAGAACCTGCAAGTGTA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTTCCCATGGACCATGTaGAATGTTCCTGGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAFPWTM*NVPGAL
Trigger: CAAGGCCCCAGGAACATTCCACATGGTCCATGGGAA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAGGTTCTGCACTCGTTaGGAGCCCCCGTTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDRFCTR*EPPFCH
Trigger: ATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCT...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGGGCAGTCACCATTGCTaGGGTCGCAGAAGGTCACTG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKGSHHC*GRRRSL
Trigger: CAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCC...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATCCCCGCACAGTCACATaGTCGACAGCCATAGTCTCC +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHPRTVT*STAIVS
Trigger: GGAGACTATGGCTGTCGACCATGTGACTGTGCGGGG...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACAGTTCGGTAGCATTCTaGCCGCAGGTGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYSSVAF*PQVVSA
Trigger: GGCAGACACCACCTGCGGTCAGAATGCTACCGAACT...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGAGTTCGGTAGCATTCTaGCCGCAGGTGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVSSVAF*PQVVSA
Trigger: GGCAGACACCACCTGCGGTCAGAATGCTACCGAACT...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGGCACGCGAAGGTTGGTaGTCTTCAGCTGCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKAREGW*SSAAPE
Trigger: TTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGC...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGTCGCAGAAGGTCACTaGGTTGGCAGGAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSVAEGH*VGRKDS
Trigger: GCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGAC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCACCGCAGGTGGTGTCTaGCCAGAGTTTTCGCCCCAA +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSITAGGV*PEFSPQ
Trigger: TTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGT...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGACATCCTCCGCAGACTaGCACCATGTGCGAGGAAAC +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKTSSAD*HHVRGN
Trigger: GTTTCCTCGCACATGGTGGCAGTCTGCGGAGGATGT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCTGTCGTTTCAGCAGCTaGACGCGAAGGTTGGTGATC +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCCRFSS*TRRLVI
Trigger: GATCACCAACCTTCGCGTGCAGCTGCTGAAACGACA...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATCGTTTTGCCATCAGCTaGCTCCCATGGCCGGTCATT +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHRFAIS*LPWPVI
Trigger: AATGACCGGCCATGGGAGGCAGCTGATGGCAAAACG...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCGGCAGGAACACGGTTTaGAAGCATCTGGAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCGRNTV*KHLELR
Trigger: TCTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCC...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATAAGGGCAGTCACCATTaGTGGGGTCGCAGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHKGSHH*WGRRRS
Trigger: TGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTT...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATACCCAGTATCCCACCATaGACCTGTCACAACGTCGCC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIPSIPP*TCHNVA
Trigger: GGCGACGTTGTGACAGGTGCATGGTGGGATACTGGG...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATCCCAGTATCCCACCATaGACCTGTCACAACGTCGCC +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYPSIPP*TCHNVA
Trigger: GGCGACGTTGTGACAGGTGCATGGTGGGATACTGGG...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCCCAGTATCCCACCATaGACCTGTCACAACGTCGCC +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIPSIPP*TCHNVA
Trigger: GGCGACGTTGTGACAGGTGCATGGTGGGATACTGGG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCGGTTCGCTCTTATTGTaGACGGGACGGAAGTCAGGA +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCGSLLL*TGRKSG
Trigger: TCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACC...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACGGTTCGCTCTTATTGTaGACGGGACGGAAGTCAGGA +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDGSLLL*TGRKSG
Trigger: TCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACC...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCGGCAGTCACCATTGCTaGGGTCGCAGAAGGTCACTG +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIGSHHC*GRRRSL
Trigger: CAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCC...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGGCAGTCACCATTGCTaGGGTCGCAGAAGGTCACTG +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSGSHHC*GRRRSL
Trigger: CAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCCGGCCTGGGGGACTTaGACATCACAATTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVPAWGT*TSQLGE
Trigger: CTCACCTAATTGTGATGTTCAAGTCCCCCAGGCCGG...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATACCGGCCTGGGGGACTTaGACATCACAATTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIPAWGT*TSQLGE
Trigger: CTCACCTAATTGTGATGTTCAAGTCCCCCAGGCCGG...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCGCACGCGAAGGTTGGTaGTCTTCAGCTGCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIAREGW*SSAAPE
Trigger: TTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGC...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTTCAGGTCATTTCTCTaGCAGGGACAAGACTGTCGT +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAFRSFL*QGQDCR
Trigger: ACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATGTCGCAGAAGGTCACTaGGTTGGCAGGAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYVAEGH*VGRKDS
Trigger: GCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGAC...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATGCCGCCGCTGAACTTTaGGAGACCTTTCACTTCCCG +
Preference number: 4 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYAAAEL*ETFHFP
Trigger: CGGGAAGTGAAAGGTCTCGCAAAGTTCAGCGGCGGC...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS-3UTR GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATTTCCCATCCGAGGGTTaGAGGCTTTTTCACAGCGGG +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYFPSEG*RLFHSG
Trigger: CCCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAA...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACTTCCCATCCGAGGGTTaGAGGCTTTTTCACAGCGGG +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYFPSEG*RLFHSG
Trigger: CCCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAA...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAACCGCAGGTGGTGTCTaGCCAGAGTTTTCGCCCCAA +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLTAGGV*PEFSPQ
Trigger: TTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGT...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTGAGGATAGGCAGCATTaGACTTGTCACATTTGGGCT +
Preference number: 4 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLEDRQH*TCHIWA
Trigger: AGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTC...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAACATCCTCCGCAGACTaGCACCATGTGCGAGGAAAC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYITSSAD*HHVRGN
Trigger: GTTTCCTCGCACATGGTGGCAGTCTGCGGAGGATGT...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCGTTTTGCCATCAGCTaGCTCCCATGGCCGGTCATT +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIRFAIS*LPWPVI
Trigger: AATGACCGGCCATGGGAGGCAGCTGATGGCAAAACG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATCGTTTTGCCATCAGCTaGCTCCCATGGCCGGTCATT +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYRFAIS*LPWPVI
Trigger: AATGACCGGCCATGGGAGGCAGCTGATGGCAAAACG...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATACACTTGCAGGTTCTaGACTCGTTGGGAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLYTCRF*TRWEPP
Trigger: CGGGGGCTCCCAACGAGTGCAGAACCTGCAAGTGTA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCAAGGGCAGTCACCATTaGTGGGGTCGCAGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSKGSHH*WGRRRS
Trigger: TGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTT...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACAAGGGCAGTCACCATTaGTGGGGTCGCAGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYKGSHH*WGRRRS
Trigger: TGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTT...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCGTTTTCCCAAAGTCCTaGGAGCGGTCCAGCACCATG +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIVFPKS*ERSSTM
Trigger: CATGGTGCTGGACCGCTCCCAGGACTTTGGGAAAAC...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGTTTTCCCAAAGTCCTaGGAGCGGTCCAGCACCATG +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSVFPKS*ERSSTM
Trigger: CATGGTGCTGGACCGCTCCCAGGACTTTGGGAAAAC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACCATGTGGAATGTTCCTaGGGCCTTGACAGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDHVECS*GLDRSE
Trigger: TTCAGACCTGTCAAGGCCCCAGGAACATTCCACATG...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTTCCCATGGACCATGTaGAATGTTCCTGGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHFPWTM*NVPGAL
Trigger: CAAGGCCCCAGGAACATTCCACATGGTCCATGGGAA...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCAGGTTCTGCACTCGTTaGGAGCCCCCGTTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSRFCTR*EPPFCH
Trigger: ATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCT...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATCCTGGCTTGCACCTCTaGCAATACTGTCCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHPGLHL*QYCPSV
Trigger: CACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGG...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGCAGTCTATGTCTGTGTaGCTGCTGATGCAGTCTCCG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKQSMSV*LLMQSP
Trigger: CGGAGACTGCATCAGCAGCCACACAGACATAGACTG...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCTCCCACTCCCAGGCTaGTTCGCTCTTATTGTGCAC +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSILPLPG*FALIVH
Trigger: GTGCACAATAAGAGCGAACCAGCCTGGGAGTGGGAG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTCCCACTCCCAGGCTaGTTCGCTCTTATTGTGCAC +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVLPLPG*FALIVH
Trigger: GTGCACAATAAGAGCGAACCAGCCTGGGAGTGGGAG...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGACCACTACGATTCCCTaGTGCCTCCCACACATTAAC +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKTTTIP*CLPHIN
Trigger: GTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTTCCAGTTTCCTGTCTaGGGTCTTCTTGCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAFQFPV*GLLALK
Trigger: CTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTTGTCACATTTGGGCTaGCGACAAGTCAGATCCGTG +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHLSHLG*RQVRSV
Trigger: CACGGATCTGACTTGTCGGCAGCCCAAATGTGACAA...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATACATCCTCCGCAGACTaGCACCATGTGCGAGGAAAC +
Preference number: 4 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYTSSAD*HHVRGN
Trigger: GTTTCCTCGCACATGGTGGCAGTCTGCGGAGGATGT...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCTGTCGTTTCAGCAGCTaGACGCGAAGGTTGGTGATC +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSCRFSS*TRRLVI
Trigger: GATCACCAACCTTCGCGTGCAGCTGCTGAAACGACA...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATATGTCGTTTCAGCAGCTaGACGCGAAGGTTGGTGATC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYICRFSS*TRRLVI
Trigger: GATCACCAACCTTCGCGTGCAGCTGCTGAAACGACA...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCAGCCATGAACAGGTATaGATTGATCAGCGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCSHEQV*IDQRGH
Trigger: ATGGCCACGCTGATCAATGCATACCTGTTCATGGCT...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACCTGCCTGCTGTGTTGTaGTTACACATACACTTCCCA +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDLPAVL*LHIHFP
Trigger: TGGGAAGTGTATGTGTAAGCACAACACAGCAGGCAG...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGGCAGGAACACGGTTTaGAAGCATCTGGAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSGRNTV*KHLELR
Trigger: TCTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGGGCAGGAACACGGTTTaGAAGCATCTGGAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVGRNTV*KHLELR
Trigger: TCTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCC...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCATTCTGACCGCAGGTaGTGTCTGCCCAGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIHSDRR*CLPRVF
Trigger: GAAAACTCTGGGCAGACACCACCTGCGGTCAGAATG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATACATTCTGACCGCAGGTaGTGTCTGCCCAGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIHSDRR*CLPRVF
Trigger: GAAAACTCTGGGCAGACACCACCTGCGGTCAGAATG...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACTGCACTTGTCACATTTaGGCTGCCGACAAGTCAGAT +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDCTCHI*AADKSD
Trigger: ATCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCA...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAGTTTTCCCAAAGTCCTaGGAGCGGTCCAGCACCATG +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLVFPKS*ERSSTM
Trigger: CATGGTGCTGGACCGCTCCCAGGACTTTGGGAAAAC...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGCATGTGGAATGTTCCTaGGGCCTTGACAGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKHVECS*GLDRSE
Trigger: TTCAGACCTGTCAAGGCCCCAGGAACATTCCACATG...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATCATGTGGAATGTTCCTaGGGCCTTGACAGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHHVECS*GLDRSE
Trigger: TTCAGACCTGTCAAGGCCCCAGGAACATTCCACATG...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCCTGGCTTGCACCTCTaGCAATACTGTCCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIPGLHL*QYCPSV
Trigger: CACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCCAGTCTATGTCTGTGTaGCTGCTGATGCAGTCTCCG +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSQSMSV*LLMQSP
Trigger: CGGAGACTGCATCAGCAGCCACACAGACATAGACTG...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGACATTAACGTCGAAGTaGCAGGTATCAGCATGCCCA +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKTLTSK*QVSACP
Trigger: TGGGCATGCTGATACCTGTCACTTCGACGTTAATGT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGACCACTACGATTCCCTaGTGCCTCCCACACATTAAC +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVTTTIP*CLPHIN
Trigger: GTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGT...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATACCACTACGATTCCCTaGTGCCTCCCACACATTAAC +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYTTTIP*CLPHIN
Trigger: GTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGT...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTAAGTCAGGAACTTCATaGTACCAGTCTATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAKSGTS*YQSMSV
Trigger: CACAGACATAGACTGGTATCATGAAGTTCCTGACTT...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCTTCCAGTTTCCTGTCTaGGGTCTTCTTGCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCFQFPV*GLLALK
Trigger: CTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAA...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATTTGTCACATTTGGGCTaGCGACAAGTCAGATCCGTG +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYLSHLG*RQVRSV
Trigger: CACGGATCTGACTTGTCGGCAGCCCAAATGTGACAA...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATATGGATCTTTTCTCTGTaGACATCCTCCGCAGACTGC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIWIFSL*TSSADC
Trigger: GCAGTCTGCGGAGGATGTGCACAGAGAAAAGATCCA...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGGATAGAAGCCTGGCTTaGACCTCTGGCAATACTGTC +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVDRSLA*TSGNTV
Trigger: GACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATC...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGATAGAAGCCTGGCTTaGACCTCTGGCAATACTGTC +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSDRSLA*TSGNTV
Trigger: GACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAGGTTCGCTCTTATTGTaGACGGGACGGAAGTCAGGA +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLGSLLL*TGRKSG
Trigger: TCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACC...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTACAGACCAAAGTTCATaGGTAACACACAAGAGAAGG +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAATDQSS*VTHKRR
Trigger: CCTTCTCTTGTGTGTTACGCATGAACTTTGGTCTGT...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCACTTGTCACATTTaGGCTGCCGACAAGTCAGAT +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKCTCHI*AADKSD
Trigger: ATCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCGCTTCCAGGTCTAACTaGATCTTTTCTCTGTGCACA +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCASRSN*IFSLCT
Trigger: TGTGCACAGAGAAAAGATCCAGTTAGACCTGGAAGC...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGCTGCTCCTGAACTTTaGCACTGTAAGGGTTCTCTG +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYAAPEL*HCKGSL
Trigger: CAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGC...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACGCTGCTCCTGAACTTTaGCACTGTAAGGGTTCTCTG +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYAAPEL*HCKGSL
Trigger: CAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGC...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGTCACGATAGAAGCCTaGCTTGCACCTCTGGCAATA +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIVTIEA*LAPLAI
Trigger: TATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGAC...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACGTCACGATAGAAGCCTaGCTTGCACCTCTGGCAATA +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYVTIEA*LAPLAI
Trigger: TATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGAC...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACGCTGATCCTACTGGATaGCAGGAACACGGTTTGCAA +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYADPTG*QEHGLQ
Trigger: TTGCAAACCGTGTTCCTGCCATCCAGTAGGATCAGC...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGGCTGATCCTACTGGATaGCAGGAACACGGTTTGCAA +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVADPTG*QEHGLQ
Trigger: TTGCAAACCGTGTTCCTGCCATCCAGTAGGATCAGC...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGCTGATCCTACTGGATaGCAGGAACACGGTTTGCAA +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSADPTG*QEHGLQ
Trigger: TTGCAAACCGTGTTCCTGCCATCCAGTAGGATCAGC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTACAGTCTATGTCTGTGTaGCTGCTGATGCAGTCTCCG +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLQSMSV*LLMQSP
Trigger: CGGAGACTGCATCAGCAGCCACACAGACATAGACTG...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATTTCAGGTCATTTCTCTaGCAGGGACAAGACTGTCGT +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYFRSFL*QGQDCR
Trigger: ACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAA...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCTTCAGGTCATTTCTCTaGCAGGGACAAGACTGTCGT +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSFRSFL*QGQDCR
Trigger: ACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAA...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGACATTAACGTCGAAGTaGCAGGTATCAGCATGCCCA +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVTLTSK*QVSACP
Trigger: TGGGCATGCTGATACCTGTCACTTCGACGTTAATGT...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATATTCCAAACCAGGATTaGGGATTGGACAAGTGCATC +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHIPNQD*GLDKCI
Trigger: GATGCACTTGTCCAATCCTCAATCCTGGTTTGGAAT...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGATTCCAAACCAGGATTaGGGATTGGACAAGTGCATC +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKIPNQD*GLDKCI
Trigger: GATGCACTTGTCCAATCCTCAATCCTGGTTTGGAAT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTTCCAGTTTCCTGTCTaGGGTCTTCTTGCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKFQFPV*GLLALK
Trigger: CTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCCCTCCAGCTCAAAGCTaGGACTTCACGCATACATAT +
Preference number: 4 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSPPAQS*DFTHTY
Trigger: ATATGTATGCGTGAAGTCTCAGCTTTGAGCTGGAGG...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATCCTCCAGCTCAAAGCTaGGACTTCACGCATACATAT +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYPPAQS*DFTHTY
Trigger: ATATGTATGCGTGAAGTCTCAGCTTTGAGCTGGAGG...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGAGGATAGGCAGCATTaGACTTGTCACATTTGGGCT +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIEDRQH*TCHIWA
Trigger: AGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTC...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATGGATCTTTTCTCTGTaGACATCCTCCGCAGACTGC +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLWIFSL*TSSADC
Trigger: GCAGTCTGCGGAGGATGTGCACAGAGAAAAGATCCA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCAGCCATGAACAGGTATaGATTGATCAGCGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSISHEQV*IDQRGH
Trigger: ATGGCCACGCTGATCAATGCATACCTGTTCATGGCT...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGAGCCATGAACAGGTATaGATTGATCAGCGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVSHEQV*IDQRGH
Trigger: ATGGCCACGCTGATCAATGCATACCTGTTCATGGCT...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACCTGCCTGCTGTGTTGTaGTTACACATACACTTCCCA +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYLPAVL*LHIHFP
Trigger: TGGGAAGTGTATGTGTAAGCACAACACAGCAGGCAG...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATATCCTCATGTCCTaGTACAAGGTATTCCAAACC +
Preference number: 4 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLYILMS*YKVFQT
Trigger: GGTTTGGAATACCTTGTAGCAGGACATGAGGATATA...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTTCCACAGAATGCCTTaGCATTTCCTAATGTCTGTT +
Preference number: 4 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAFHRMP*HFLMSV
Trigger: AACAGACATTAGGAAATGCCAAGGCATTCTGTGGAA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATACCAGGATTGAGGATTaGACAAGTGCATCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYTRIED*TSASSV
Trigger: GACAGAGGATGCACTTGTCCAATCCTCAATCCTGGT...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAACCAGGATTGAGGATTaGACAAGTGCATCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYITRIED*TSASSV
Trigger: GACAGAGGATGCACTTGTCCAATCCTCAATCCTGGT...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCACCAGGATTGAGGATTaGACAAGTGCATCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSITRIED*TSASSV
Trigger: GACAGAGGATGCACTTGTCCAATCCTCAATCCTGGT...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCTCACAATTAGGTGAGTaGAGTAGAATTCAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCSQLGE*SRIQLP
Trigger: TGGAAGCTGAATTCTACTTCACTCACCTAATTGTGA...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAACATTAACGTCGAAGTaGCAGGTATCAGCATGCCCA +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLTLTSK*QVSACP
Trigger: TGGGCATGCTGATACCTGTCACTTCGACGTTAATGT...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATATTCCAAACCAGGATTaGGGATTGGACAAGTGCATC +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYIPNQD*GLDKCI
Trigger: GATGCACTTGTCCAATCCTCAATCCTGGTTTGGAAT...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTACTGCCTGCTGTGTTGTaGTTACACATACACTTCCCA +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLLPAVL*LHIHFP
Trigger: TGGGAAGTGTATGTGTAAGCACAACACAGCAGGCAG...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATACAGACCAAAGTTCATaGGTAACACACAAGAGAAGG +
Preference number: 4 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHTDQSS*VTHKRR
Trigger: CCTTCTCTTGTGTGTTACGCATGAACTTTGGTCTGT...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCGCTTCCAGGTCTAACTaGATCTTTTCTCTGTGCACA +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIASRSN*IFSLCT
Trigger: TGTGCACAGAGAAAAGATCCAGTTAGACCTGGAAGC...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
3UTR CAA 72 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTaGTACATAGACAAGTGCCATTATGTGCTATCCATC +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCV*YIDKCHYVLSI
Trigger: GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
3UTR CAA 72 bp GAGTTAAATAGCACAACTTCTTTTATATGGTCACTTTaGTCCACATGTAGTGGCAGTGCTGCTGCTTCAGTA +
Preference number: 4 (lower is better)
Translates to: ELNSTTSFIWSL*STCSGSAAASV
Trigger: TACTGAAGCAGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCTATTTAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACTGTATCGTATGGTGGTaGCAAAGCTTTGAAAATAAC +
Preference number: 4 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDCIVWW*QSFENN
Trigger: GTTATTTTCAAAGCTTTGTCACCACCATACGATACA...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAAAGTCAGGAACTTCATaGTACCAGTCTATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIKSGTS*YQSMSV
Trigger: CACAGACATAGACTGGTATCATGAAGTTCCTGACTT...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGAGAGAAGGTTTCCAGTaGTGGACAAAGCTTTTCATA +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKREGFQ*WTKLFI
Trigger: TATGAAAAGCTTTGTCCAGCACTGGAAACCTTCTCT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCTGTCTGAGGTCTTCTTaGTCTAAAGTTTGTGTTTTG +
Preference number: 4 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCCLRSS*SKVCVL
Trigger: CAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATAGTGGTTATGCGTaGGTACAGAAGATGAATAAT +
Preference number: 4 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLYSGYA*VQKMNN
Trigger: ATTATTCATCTTCTGTACCCACGCATAACCACTATA...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR TCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGTCACAATTAGGTGAGTaGAGTAGAATTCAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVSQLGE*SRIQLP
Trigger: TGGAAGCTGAATTCTACTTCACTCACCTAATTGTGA...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCTATATCCTCATGTCCTaGTACAAGGTATTCCAAACC +
Preference number: 4 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIYILMS*YKVFQT
Trigger: GGTTTGGAATACCTTGTAGCAGGACATGAGGATATA...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGAGAGAAGGTTTCCAGTaGTGGACAAAGCTTTTCATA +
Preference number: 4 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVREGFQ*WTKLFI
Trigger: TATGAAAAGCTTTGTCCAGCACTGGAAACCTTCTCT...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATAGAGAAGGTTTCCAGTaGTGGACAAAGCTTTTCATA +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYREGFQ*WTKLFI
Trigger: TATGAAAAGCTTTGTCCAGCACTGGAAACCTTCTCT...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGTCTGAGGTCTTCTTaGTCTAAAGTTTGTGTTTTG +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKCLRSS*SKVCVL
Trigger: CAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATATTCCACAGAATGCCTTaGCATTTCCTAATGTCTGTT +
Preference number: 4 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIFHRMP*HFLMSV
Trigger: AACAGACATTAGGAAATGCCAAGGCATTCTGTGGAA...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACTTCCACAGAATGCCTTaGCATTTCCTAATGTCTGTT +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYFHRMP*HFLMSV
Trigger: AACAGACATTAGGAAATGCCAAGGCATTCTGTGGAA...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGACATATTCTCCTTTCTaGTTGCATCTTCACCTAGTT +
Preference number: 4 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKTYSPF*LHLHLV
Trigger: AACTAGGTGAAGATGCAACCAGAAAGGAGAATATGT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATATATCCTCATGTCCTaGTACAAGGTATTCCAAACC +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLYILMS*YKVFQT
Trigger: GGTTTGGAATACCTTGTAGCAGGACATGAGGATATA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATTTGTACATAGACAAGTaGCATTATGTGCTATCCATC +
Preference number: 4 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYLYIDK*HYVLSI
Trigger: GATGGATAGCACATAATGGCACTTGTCTATGTACAA...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR TCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATGTATCGTATGGTGGTaGCAAAGCTTTGAAAATAAC +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLCIVWW*QSFENN
Trigger: GTTATTTTCAAAGCTTTGTCACCACCATACGATACA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR GCA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATTTGTACATAGACAAGTaGCATTATGTGCTATCCATC +
Preference number: 4 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYLYIDK*HYVLSI
Trigger: GATGGATAGCACATAATGGCACTTGTCTATGTACAA...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR GCA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATGTCTGAGGTCTTCTTaGTCTAAAGTTTGTGTTTTG +
Preference number: 4 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLCLRSS*SKVCVL
Trigger: CAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CCA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATACATATTCTCCTTTCTaGTTGCATCTTCACCTAGTT +
Preference number: 4 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYTYSPF*LHLHLV
Trigger: AACTAGGTGAAGATGCAACCAGAAAGGAGAATATGT...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CCA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACTATAGTGGTTATGCGTaGGTACAGAAGATGAATAAT +
Preference number: 4 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYYSGYA*VQKMNN
Trigger: ATTATTCATCTTCTGTACCCACGCATAACCACTATA...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS GCA 90 bp GCAGCCGGGCCGGGCGGGTGCCGGAGGGAGCCGAGACCTCTGGGCTaGGGGATGAAGCGCCGCCGTCCTCGGGAGGGAACGGGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: AAGPGGCRREPRPLG*GMKRRRPREGTGPW
Trigger: CCAGGGCCCCGTTCCCTCCCGAGGACGGCGGCGCTTCATCCCGCAGCCCAGAGGTCTCGGCTCCCTCCGGCACCCGCCCGGCCCGGCTGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS TCA 90 bp GGCCGGGCGGGTGCCGGAGGGAGCCGAGACCTCTGGGCTGCGGGATaGAGCGCCGCCGTCCTCGGGAGGGAACGGGGCCCTGGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: GRAGAGGSRDLWAAG*SAAVLGRERGPGFF
Trigger: GAAGAAACCAGGGCCCCGTTCCCTCCCGAGGACGGCGGCGCTTCATCCCGCAGCCCAGAGGTCTCGGCTCCCTCCGGCACCCGCCCGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS GCA 90 bp GGCTTTTTCACAGCGGGAACTCACTCCAGCTACTCCACTCAGTCCTaGGGCCACCACCGTGCAGCCCCAGAGCAGCAGCAGCCGCGCGCA +
Preference number: 5 (lower is better)
Translates to: GFFTAGTHSSYSTQS*GHHRAAPEQQQPRA
Trigger: TGCGCGCGGCTGCTGCTGCTCTGGGGCTGCACGGTGGTGGCCGCAGGACTGAGTGGAGTAGCTGGAGTGAGTTCCCGCTGTGAAAAAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000553059.1
ENST00000674345.1
CDS GCA 90 bp CACATGGTCGACAGCCATAGTCTCCGAAGCCCCAGTATCCCACCATaGACCTGTCACAACGTCGCCCTGCCACCCCAGGCTTGCAAGGGC +
Preference number: 5 (lower is better)
Translates to: HMVDSHSLRSPSIPP*TCHNVALPPQACKG
Trigger: GCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 90 bp ATCCCACCATGCACCTGTCACAACGTCGCCCTGCCACCCCAGGCTTaGAAGGGCAGTCACCATTGCTGGGGTCGCAGAAGGTCACTGAGT +
Preference number: 5 (lower is better)
Translates to: IPPCTCHNVALPPQA*KGSHHCWGRRRSLS
Trigger: ACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CCA 90 bp CAGACTGCCACCATGTGCGAGGAAACCGGAAGGATGAGTCTGCCATaGCAGATGGCAGGTGAGCCAGGTGAGGATAGGCAGCATTGCACT +
Preference number: 5 (lower is better)
Translates to: QTATMCEETGRMSLP*QMAGEPGEDRQHCT
Trigger: AGTGCAATGCTGCCTATCCTCACCTGGCTCACCTGCCATCTGCCATGGCAGACTCATCCTTCCGGTTTCCTCGCACATGGTGGCAGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS GCA 90 bp CTGGAGCTGAGAAGGGTCTCCGCAGGTCACGATAGAAGCCTGGCTTaGACCTCTGGCAATACTGTCCTTCTGTGTTGTGCTGACAGTCAT +
Preference number: 5 (lower is better)
Translates to: LELRRVSAGHDRSLA*TSGNTVLLCCADSH
Trigger: ATGACTGTCAGCACAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCTCAGCTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS TCA 90 bp GACAGGGACAAGACTGTCGTTTCAGCAGCTGCACGCGAAGGTTGGTaGTCTTCAGCTGCTCCTGAACTTTGGCACTGTAAGGGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: DRDKTVVSAAAREGW*SSAAPELWHCKGSL
Trigger: CAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCTGCTGAAACGACAGTCTTGTCCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000552603.1
ENST00000553059.1
ENST00000674345.1
CDS TCA 90 bp GCTGGTTCGCTCTTATTGTGCACGGGACGGAAGTCAGGAACTTCATaGTACCAGTCTATGTCTGTGTGGCTGCTGATGCAGTCTCCGGTG +
Preference number: 5 (lower is better)
Translates to: AGSLLLCTGRKSGTS*YQSMSVWLLMQSPV
Trigger: CACCGGAGACTGCATCAGCAGCCACACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 90 bp GTAGAAGCAGTACAGTTCGGTAGCATTCTGACCGCAGGTGGTGTCTaGCCAGAGTTTTCGCCCCAAAGCCAAATTTCCCATCCGAGGGTT +
Preference number: 5 (lower is better)
Translates to: VEAVQFGSILTAGGV*PEFSPQSQISHPRV
Trigger: AACCCTCGGATGGGAAATTTGGCTTTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGTCAGAATGCTACCGAACTGTACTGCTTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS-3UTR CAA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTTCCCATGGCCGGTCATaGTATAACGGGGCACAGTGC +
Preference number: 5 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSSHGRS*YNGAQC
Trigger: GCACTGTGCCCCGTTATACAATGACCGGCCATGGGA...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS TCA 90 bp CCACCACTACGATTCCCTGATGCCTCCCACACATTAACGTCGAAGTaGCAGGTATCAGCATGCCCATTACACTTGCAGGTTCTGCACTCG +
Preference number: 5 (lower is better)
Translates to: PPLRFPDASHTLTSK*QVSACPLHLQVLHS
Trigger: CGAGTGCAGAACCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS-3UTR CAA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTCCTGCCACCCCAGGCTaGCAAGGGCAGTCACCATTG +
Preference number: 5 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAPATPG*QGQSPL
Trigger: CAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGG...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTCCCATGGCCGGTCATaGTATAACGGGGCACAGTGC +
Preference number: 5 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLSHGRS*YNGAQC
Trigger: GCACTGTGCCCCGTTATACAATGACCGGCCATGGGA...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCTTGGGAGCCCCCGTTTaGCCATCAGCTGCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCLGAPV*PSAASH
Trigger: ATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAA...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATCCTGCCACCCCAGGCTaGCAAGGGCAGTCACCATTG +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHPATPG*QGQSPL
Trigger: CAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGG...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTTTCCCATCCGAGGGTaGCAGGCTTTTTCACAGCGG +
Preference number: 5 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAFPIRG*QAFSQR
Trigger: CCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAAA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAGCTGCACGCGAAGGTaGGTGATCTTCAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDSCTRR*VIFSCS
Trigger: GGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCT...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTTGGGAGCCCCCGTTTaGCCATCAGCTGCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHLGAPV*PSAASH
Trigger: ATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAA...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTGGCAGGAACACGGTTaGCAAGCATCTGGAGCTGAG +
Preference number: 5 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLWQEHG*QASGAE
Trigger: CTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCCA...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGCAAGGGCAGTCACCATaGCTGGGGTCGCAGAAGGTC +
Preference number: 5 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKQGQSP*LGSQKV
Trigger: GACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTG...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCCTGCCACCCCAGGCTaGCAAGGGCAGTCACCATTG +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIPATPG*QGQSPL
Trigger: CAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCTTGGGAGCCCCCGTTTaGCCATCAGCTGCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSILGAPV*PSAASH
Trigger: ATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAA...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCCAGGTTCTGCACTCGTaGGGAGCCCCCGTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSQVLHS*GAPVLP
Trigger: TGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCTG...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTGCATGCCCATTACACTaGCAGGTTCTGCACTCGTTG +
Preference number: 5 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAACPLH*QVLHSL
Trigger: CAACGAGTGCAGAACCTGCAAGTGTAATGGGCATGC...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCCAAGGGCAGTCACCATaGCTGGGGTCGCAGAAGGTC +
Preference number: 5 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSQGQSP*LGSQKV
Trigger: GACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTG...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCAAGGGCAGTCACCATaGCTGGGGTCGCAGAAGGTC +
Preference number: 5 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVQGQSP*LGSQKV
Trigger: GACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTG...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTTTCCCATCCGAGGGTaGCAGGCTTTTTCACAGCGG +
Preference number: 5 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKFPIRG*QAFSQR
Trigger: CCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAAA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACAGCTGCACGCGAAGGTaGGTGATCTTCAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYSCTRR*VIFSCS
Trigger: GGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCT...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCAGCTGCACGCGAAGGTaGGTGATCTTCAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSSCTRR*VIFSCS
Trigger: GGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCT...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TTCAACAGCAGTCACCAAACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTGGCTGCCTGCTGTGTaGTGCTTACACATACACTTC +
Preference number: 5 (lower is better)
Translates to: FNSSHQTFTTQVVGSKVLWLPAV*CLHIHF
Trigger: GAAGTGTATGTGTAAGCACAACACAGCAGGCAGCCA...AAGCACTTTACTACCTACCACTTGTGTTGTGAACGTTTGGTGACTGCTGTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGTCCCATGGCCGGTCATaGTATAACGGGGCACAGTGC +
Preference number: 5 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVSHGRS*YNGAQC
Trigger: GCACTGTGCCCCGTTATACAATGACCGGCCATGGGA...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATCAGGTTCTGCACTCGTaGGGAGCCCCCGTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYQVLHS*GAPVLP
Trigger: TGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCTG...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTGGCAGGAACACGGTTaGCAAGCATCTGGAGCTGAG +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHWQEHG*QASGAE
Trigger: CTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCCA...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACCAGAAGGTCACTGAGTaGGCAGGAAGGACAGCTGAT +
Preference number: 5 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDQKVTE*AGRTAD
Trigger: ATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTG...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATGCTGGTTCGCTCTTATaGTGCACGGGACGGAAGTCA +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHAGSLL*CTGRKS
Trigger: TGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGC...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTAGTGGCAGTGCTGCTGCTTCAGTAGGCTTTCTCACACACCCTTTTCCTTCTTTTATATGGTCACTTTaGTCCACATGTAGTGGCAGT +
Preference number: 5 (lower is better)
Translates to: CSGSAAASVGFLTHPFPSFIWSL*STCSGS
Trigger: ACTGCCACTACATGTGGACAAAAGTGACCATATAAA...AGAAGGAAAAGGGTGTGTGAGAAAGCCTACTGAAGCAGCAGCACTGCCACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCTTTCCCATCCGAGGGTaGCAGGCTTTTTCACAGCGG +
Preference number: 5 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSFPIRG*QAFSQR
Trigger: CCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAAA...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACTGGCAGGAACACGGTTaGCAAGCATCTGGAGCTGAG +
Preference number: 5 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYWQEHG*QASGAE
Trigger: CTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCCA...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGCAGAAGGTCACTGAGTaGGCAGGAAGGACAGCTGAT +
Preference number: 5 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKQKVTE*AGRTAD
Trigger: ATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTG...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCGCTGGTTCGCTCTTATaGTGCACGGGACGGAAGTCA +
Preference number: 5 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSAGSLL*CTGRKS
Trigger: TGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGC...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATAGCTGGAAGGCGTCCTaGTTAGAGGTACTGCCCTTA +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHSWKAS*LEVLPL
Trigger: TAAGGGCAGTACCTCTAACAAGGACGCCTTCCAGCT...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS GCA 90 bp GTGGCCATTGCAGAAGCAGCTGCCCTTGACAATGAAATCATAGATTaGATAGTGTGTAAAATGTTGAGGCTCTTCGTTCAGGTCATTTCT +
Preference number: 5 (lower is better)
Translates to: VAIAEAAALDNEIID*IVCKMLRLFVQVIS
Trigger: AGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCATTGTCAAGGGCAGCTGCTTCTGCAATGGCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000552603.1
ENST00000553059.1
ENST00000674345.1
CDS-3UTR CAA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCAAATAGCGCCCTTCTaGACAACATCATCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCQIAPF*TTSSSR
Trigger: CCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTG...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCATGAACAGGTATGCATaGATCAGCGTGGCCATTGCA +
Preference number: 5 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCMNRYA*ISVAIA
Trigger: TGCAATGGCCACGCTGATCAATGCATACCTGTTCAT...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGCATGCCCATTACACTaGCAGGTTCTGCACTCGTTG +
Preference number: 5 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIACPLH*QVLHSL
Trigger: CAACGAGTGCAGAACCTGCAAGTGTAATGGGCATGC...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGGCATGCCCATTACACTaGCAGGTTCTGCACTCGTTG +
Preference number: 5 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVACPLH*QVLHSL
Trigger: CAACGAGTGCAGAACCTGCAAGTGTAATGGGCATGC...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCCAGAAGGTCACTGAGTaGGCAGGAAGGACAGCTGAT +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIQKVTE*AGRTAD
Trigger: ATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTG...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAGCTGGTTCGCTCTTATaGTGCACGGGACGGAAGTCA +
Preference number: 5 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLAGSLL*CTGRKS
Trigger: TGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGC...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATAGCTGGAAGGCGTCCTaGTTAGAGGTACTGCCCTTA +
Preference number: 5 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYSWKAS*LEVLPL
Trigger: TAAGGGCAGTACCTCTAACAAGGACGCCTTCCAGCT...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCTTGCACTTGTCACATTaGGGCTGCCGACAAGTCAGA +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSILHLSH*GCRQVR
Trigger: TCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCAA...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATCAAATAGCGCCCTTCTaGACAACATCATCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHQIAPF*TTSSSR
Trigger: CCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTG...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGATGAACAGGTATGCATaGATCAGCGTGGCCATTGCA +
Preference number: 5 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKMNRYA*ISVAIA
Trigger: TGCAATGGCCACGCTGATCAATGCATACCTGTTCAT...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGTGGCTGCCTGCTGTGTaGTGCTTACACATACACTTC +
Preference number: 5 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVWLPAV*CLHIHF
Trigger: GAAGTGTATGTGTAAGCACAACACAGCAGGCAGCCA...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS GCA 90 bp CTGGTAACATTTTTCTATCTTACTTACAGTGTAGAGTTAAACAGGTaGCCTTACCTCTCCTCCAGTGCATGGAAAAGGACTGGAGTATTT +
Preference number: 5 (lower is better)
Translates to: LVTFFYLTYSVELNR*PYLSSSAWKRTGVF
Trigger: AAATACTCCAGTCCTTTTCCATGCACTGGAGGAGAGGTAAGGGCACCTGTTTAACTCTACACTGTAAGTAAGATAGAAAAATGTTACCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000674466.1
CDS-3UTR CAA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATTGCACTTGTCACATTaGGGCTGCCGACAAGTCAGA +
Preference number: 5 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLLHLSH*GCRQVR
Trigger: TCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCAA...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCAAATAGCGCCCTTCTaGACAACATCATCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: RSSCSKVCVLYIDKCHYVQIAPF*TTSSSR
Trigger: CCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTG...CACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCATAGTGTGTAAAATGTaGAGGCTCTTCGTTCAGGTC +
Preference number: 5 (lower is better)
Translates to: SCLRSSCSKVCVLYIDKCIVCKM*RLFVQV
Trigger: GACCTGAACGAAGAGCCTCAACATTTTACACACTAT...GCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp ACGTTCACAACACAAGTGGTAGGTAGTAAAGTGCTTTATACAAGGAAATACTATTGGCTGCCTGCTGTGTaGTGCTTACACATACACTTC +
Preference number: 5 (lower is better)
Translates to: TFTTQVVGSKVLYTRKYYWLPAV*CLHIHF
Trigger: GAAGTGTATGTGTAAGCACAACACAGCAGGCAGCCA...ATAGTATTTCCTTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAACGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp CCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACATTCCACAGAATGCCTaGGCATTTCCTAATGTCTGT +
Preference number: 5 (lower is better)
Translates to: PVSCLRSSCSKVCVLYIDIPQNA*AFPNVC
Trigger: ACAGACATTAGGAAATGCCAAGGCATTCTGTGGAAT...GTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AGCACAACTTCTTTTATATGGTCACTTTTGTCCACATGTAGTGGCAGTGCTGCTTATTCTCCTTTCTGGTaGCATCTTCACCTAGTTTCT +
Preference number: 5 (lower is better)
Translates to: STTSFIWSLLSTCSGSAAYSPFW*HLHLVS
Trigger: AGAAACTAGGTGAAGATGCAACCAGAAAGGAGAATA...AGCAGCACTGCCACTACATGTGGACAAAAGTGACCATATAAAAGAAGTTGTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp TCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTAATGAACAGGTATGCATaGATCAGCGTGGCCATTGCA +
Preference number: 5 (lower is better)
Translates to: SSCSKVCVLYIDKCHYVLMNRYA*ISVAIA
Trigger: TGCAATGGCCACGCTGATCAATGCATACCTGTTCAT...TAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATATTCCACAGAATGCCTaGGCATTTCCTAATGTCTGT +
Preference number: 5 (lower is better)
Translates to: CLRSSCSKVCVLYIDKCHIPQNA*AFPNVC
Trigger: ACAGACATTAGGAAATGCCAAGGCATTCTGTGGAAT...ATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp GTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTATTCCAAACCAGGATaGAGGATTGGACAAGTGCAT +
Preference number: 5 (lower is better)
Translates to: VSCLRSSCSKVCVLYIDKYSKPG*RIGQVH
Trigger: ATGCACTTGTCCAATCCTCAATCCTGGTTTGGAATA...CTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp AAAATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGTGTGTAAAATGTaGAGGCTCTTCGTTCAGGTC +
Preference number: 5 (lower is better)
Translates to: KIPVSCLRSSCSKVCVLYIVCKM*RLFVQV
Trigger: GACCTGAACGAAGAGCCTCAACATTTTACACACTAT...GTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATAGTGTGTAAAATGTaGAGGCTCTTCGTTCAGGTC +
Preference number: 5 (lower is better)
Translates to: SCSKVCVLYIDKCHYVLSIVCKM*RLFVQV
Trigger: GACCTGAACGAAGAGCCTCAACATTTTACACACTAT...GGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCATTCCACAGAATGCCTaGGCATTTCCTAATGTCTGT +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIIPQNA*AFPNVC
Trigger: ACAGACATTAGGAAATGCCAAGGCATTCTGTGGAAT...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCTATTCCAAACCAGGATaGAGGATTGGACAAGTGCAT +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIYSKPG*RIGQVH
Trigger: ATGCACTTGTCCAATCCTCAATCCTGGTTTGGAATA...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATTATTCCAAACCAGGATaGAGGATTGGACAAGTGCAT +
Preference number: 5 (lower is better)
Translates to: LRSSCSKVCVLYIDKCHYYSKPG*RIGQVH
Trigger: ATGCACTTGTCCAATCCTCAATCCTGGTTTGGAATA...ATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS GCA 90 bp CTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTaGCATTATGTGCTATCCATCTTAATGCTACTTGCACTCTCTTTT +
Preference number: 5 (lower is better)
Translates to: LRSSCSKVCVLYIDK*HYVLSILMLLALSF
Trigger: AAAAGAGAGTGCAAGTAGCATTAAGATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
CDS-3UTR CAA 90 bp TGCTCTAAAGTTTGTGTTTTGTACATAGACAAGTGCCATTATGTGCTATCCATCTTTATATGGTCACTTTaGTCCACATGTAGTGGCAGT +
Preference number: 5 (lower is better)
Translates to: CSKVCVLYIDKCHYVLSIFIWSL*STCSGS
Trigger: ACTGCCACTACATGTGGACAAAAGTGACCATATAAA...GATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS-3UTR CAA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTTGTACATATATTCTCCTTTCTGGTaGCATCTTCACCTAGTTTCT +
Preference number: 5 (lower is better)
Translates to: IPVSCLRSSCSKVCVLYIYSPFW*HLHLVS
Trigger: AGAAACTAGGTGAAGATGCAACCAGAAAGGAGAATA...TATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343702.9
ENST00000344911.8
CDS TCA 72 bp GGTGCCGGAGGGAGCCGAGACCTCTGGGCTGCGGGATaGAGCGCCGCCGTCCTCGGGAGGGAACGGGGCCCT +
Preference number: 6 (lower is better)
Translates to: GAGGSRDLWAAG*SAAVLGRERGP
Trigger: AGGGCCCCGTTCCCTCCCGAGGACGGCGGCGCTTCATCCCGCAGCCCAGAGGTCTCGGCTCCCTCCGGCACC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS CCA 72 bp TCGGGAGGGAACGGGGCCCTGGTTTCTTCCTCCTCCTaGGGCGCCGGGCTCGGTCAGCGGTCGCCGGCAGCT +
Preference number: 6 (lower is better)
Translates to: SGGNGALVSSSS*GAGLGQRSPAA
Trigger: AGCTGCCGGCGACCGCTGACCGAGCCCGGCGCCCCAGGAGGAGGAAGAAACCAGGGCCCCGTTCCCTCCCGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343702.9
CDS GCA 72 bp ACAGCGGGAACTCACTCCAGCTACTCCACTCAGTCCTaGGGCCACCACCGTGCAGCCCCAGAGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: TAGTHSSYSTQS*GHHRAAPEQQQ
Trigger: CTGCTGCTGCTCTGGGGCTGCACGGTGGTGGCCGCAGGACTGAGTGGAGTAGCTGGAGTGAGTTCCCGCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp TGCACCTGTCACAACGTCGCCCTGCCACCCCAGGCTTaGAAGGGCAGTCACCATTGCTGGGGTCGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: CTCHNVALPPQA*KGSHHCWGRRR
Trigger: CCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 72 bp CGCCCTGCCACCCCAGGCTTGCAAGGGCAGTCACCATaGCTGGGGTCGCAGAAGGTCACTGAGTTGGCAGGA +
Preference number: 6 (lower is better)
Translates to: RPATPGLQGQSP*LGSQKVTELAG
Trigger: TCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp GCCCTGCCACCCCAGGCTTGCAAGGGCAGTCACCATTaGTGGGGTCGCAGAAGGTCACTGAGTTGGCAGGAA +
Preference number: 6 (lower is better)
Translates to: ALPPQACKGSHH*WGRRRSLSWQE
Trigger: TTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp GACAGCCATAGTCTCCGAAGCCCCAGTATCCCACCATaGACCTGTCACAACGTCGCCCTGCCACCCCAGGCT +
Preference number: 6 (lower is better)
Translates to: DSHSLRSPSIPP*TCHNVALPPQA
Trigger: AGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 72 bp ATGCACCTGTCACAACGTCGCCCTGCCACCCCAGGCTaGCAAGGGCAGTCACCATTGCTGGGGTCGCAGAAG +
Preference number: 6 (lower is better)
Translates to: MHLSQRRPATPG*QGQSPLLGSQK
Trigger: CTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 90 bp TATCCCACCATGCACCTGTCACAACGTCGCCCTGCCACCCCAGGCTaGCAAGGGCAGTCACCATTGCTGGGGTCGCAGAAGGTCACTGAG +
Preference number: 6 (lower is better)
Translates to: YPTMHLSQRRPATPG*QGQSPLLGSQKVTE
Trigger: CTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS TCA 72 bp TCGCTGGGCCACCCCTCCTCATCATTCCTTAGGCCATaGAGTGCCGGGGGATGGCGAGCTGGGTCCTTTGTT +
Preference number: 6 (lower is better)
Translates to: SLGHPSSSFLRP*SAGGWRAGSFV
Trigger: AACAAAGGACCCAGCTCGCCATCCCCCGGCACTTCATGGCCTAAGGAATGATGAGGAGGGGTGGCCCAGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547980.1
CDS CCA 72 bp TCCGGTGATAGGGTCACAGCTCCCCGCACAGTCACATaGTCGACAGCCATAGTCTCCGAAGCCCCAGTATCC +
Preference number: 6 (lower is better)
Translates to: SGDRVTAPRTVT*STAIVSEAPVS
Trigger: GGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTGACTGTGCGGGGAGCTGTGACCCTATCACCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 90 bp TGCCCATTACACTTGCAGGTTCTGCACTCGTTGGGAGCCCCCGTTTaGCCATCAGCTGCCTCCCATGGCCGGTCATTGTATAACGGGGCA +
Preference number: 6 (lower is better)
Translates to: CPLHLQVLHSLGAPV*PSAASHGRSLYNGA
Trigger: TGCCCCGTTATACAATGACCGGCCATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCTGCAAGTGTAATGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CCA 72 bp ACCATGTGCGAGGAAACCGGAAGGATGAGTCTGCCATaGCAGATGGCAGGTGAGCCAGGTGAGGATAGGCAG +
Preference number: 6 (lower is better)
Translates to: TMCEETGRMSLP*QMAGEPGEDRQ
Trigger: CTGCCTATCCTCACCTGGCTCACCTGCCATCTGCCATGGCAGACTCATCCTTCCGGTTTCCTCGCACATGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS CCA 72 bp CAGCATGCCCATTACACTTGCAGGTTCTGCACTCGTTaGGAGCCCCCGTTTTGCCATCAGCTGCCTCCCATG +
Preference number: 6 (lower is better)
Translates to: QHAHYTCRFCTR*EPPFCHQLPPM
Trigger: CATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCTGCAAGTGTAATGGGCATGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 90 bp TTGCAAGGGCAGTCACCATTGCTGGGGTCGCAGAAGGTCACTGAGTaGGCAGGAAGGACAGCTGATCCTACTGGATGGCAGGAACACGGT +
Preference number: 6 (lower is better)
Translates to: LQGQSPLLGSQKVTE*AGRTADPTGWQEHG
Trigger: ACCGTGTTCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp ACTTGCAGGTTCTGCACTCGTTGGGAGCCCCCGTTTTaGCATCAGCTGCCTCCCATGGCCGGTCATTGTATA +
Preference number: 6 (lower is better)
Translates to: TCRFCTRWEPPF*HQLPPMAGHCI
Trigger: TATACAATGACCGGCCATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCTGCAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CCA 72 bp AGTCACCATTGCTGGGGTCGCAGAAGGTCACTGAGTTaGCAGGAAGGACAGCTGATCCTACTGGATGGCAGG +
Preference number: 6 (lower is better)
Translates to: SHHCWGRRRSLS*QEGQLILLDGR
Trigger: CCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 72 bp CAGTCACCATTGCTGGGGTCGCAGAAGGTCACTGAGTaGGCAGGAAGGACAGCTGATCCTACTGGATGGCAG +
Preference number: 6 (lower is better)
Translates to: QSPLLGSQKVTE*AGRTADPTGWQ
Trigger: CTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CCA 72 bp TCCCATGGCCGGTCATTGTATAACGGGGCACAGTGCTaGCAGTGGCTGCCTGCTGTGTTGTGCTTACACATA +
Preference number: 6 (lower is better)
Translates to: SHGRSLYNGAQC*QWLPAVLCLHI
Trigger: TATGTGTAAGCACAACACAGCAGGCAGCCACTGCCAGCACTGTGCCCCGTTATACAATGACCGGCCATGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp CAGATGGCAGGTGAGCCAGGTGAGGATAGGCAGCATTaGACTTGTCACATTTGGGCTGCCGACAAGTCAGAT +
Preference number: 6 (lower is better)
Translates to: QMAGEPGEDRQH*TCHIWAADKSD
Trigger: ATCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTCACCTGGCTCACCTGCCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS GCA 72 bp AGAAGGGTCTCCGCAGGTCACGATAGAAGCCTGGCTTaGACCTCTGGCAATACTGTCCTTCTGTGTTGTGCT +
Preference number: 6 (lower is better)
Translates to: RRVSAGHDRSLA*TSGNTVLLCCA
Trigger: AGCACAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp GTACAGTTCGGTAGCATTCTGACCGCAGGTGGTGTCTaGCCAGAGTTTTCGCCCCAAAGCCAAATTTCCCAT +
Preference number: 6 (lower is better)
Translates to: VQFGSILTAGGV*PEFSPQSQISH
Trigger: ATGGGAAATTTGGCTTTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGTCAGAATGCTACCGAACTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS CCA 72 bp CCAGGTGAGGATAGGCAGCATTGCACTTGTCACATTTaGGCTGCCGACAAGTCAGATCCGTGTTCTCACTGT +
Preference number: 6 (lower is better)
Translates to: PGEDRQHCTCHI*AADKSDPCSHC
Trigger: ACAGTGAGAACACGGATCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTCACCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS CAA 72 bp AAGCCAGAGGAAGCTCTGTCAAGGTCTGTAGGAACTTaGAAGCTCTTCTGCTTCCTGAGCCCAGACAGTGGG +
Preference number: 6 (lower is better)
Translates to: KPEEALSRSVGT*KLFCFLSPDSG
Trigger: CCCACTGTCTGGGCTCAGGAAGCAGAAGAGCTTCAAAGTTCCTACAGACCTTGACAGAGCTTCCTCTGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552603.1
CDS TCA 72 bp AAGACTGTCGTTTCAGCAGCTGCACGCGAAGGTTGGTaGTCTTCAGCTGCTCCTGAACTTTGGCACTGTAAG +
Preference number: 6 (lower is better)
Translates to: KTVVSAAAREGW*SSAAPELWHCK
Trigger: CTTACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCTGCTGAAACGACAGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000552603.1
ENST00000553059.1
ENST00000674345.1
CDS TCA 72 bp CGATTCCCTGATGCCTCCCACACATTAACGTCGAAGTaGCAGGTATCAGCATGCCCATTACACTTGCAGGTT +
Preference number: 6 (lower is better)
Translates to: RFPDASHTLTSK*QVSACPLHLQV
Trigger: AACCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS TCA 72 bp CTCTTATTGTGCACGGGACGGAAGTCAGGAACTTCATaGTACCAGTCTATGTCTGTGTGGCTGCTGATGCAG +
Preference number: 6 (lower is better)
Translates to: LLLCTGRKSGTS*YQSMSVWLLMQ
Trigger: CTGCATCAGCAGCCACACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCGTGCACAATAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CCA 72 bp ACACATACACTTCCCATGGACCATGTGGAATGTTCCTaGGGCCTTGACAGGTCTGAAGCCATGAACAGGTAT +
Preference number: 6 (lower is better)
Translates to: THTLPMDHVECS*GLDRSEAMNRY
Trigger: ATACCTGTTCATGGCTTCAGACCTGTCAAGGCCCCAGGAACATTCCACATGGTCCATGGGAAGTGTATGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000552603.1
ENST00000553059.1
ENST00000674345.1
CDS CAA 72 bp GGACTGGAGTATTTAGAAGTACAAATAGCGCCCTTCTaGACAACATCATCTTCCAGGCCAAATGTAGCGGAG +
Preference number: 6 (lower is better)
Translates to: GLEYLEVQIAPF*TTSSSRPNVAE
Trigger: CTCCGCTACATTTGGCCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTGTACTTCTAAATACTCCAGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS CAA 90 bp CATGGAAAAGGACTGGAGTATTTAGAAGTACAAATAGCGCCCTTCTaGACAACATCATCTTCCAGGCCAAATGTAGCGGAGCAGTTAGTC +
Preference number: 6 (lower is better)
Translates to: HGKGLEYLEVQIAPF*TTSSSRPNVAEQLV
Trigger: GACTAACTGCTCCGCTACATTTGGCCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTGTACTTCTAAATACTCCAGTCCTTTTCCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000547980.1
ENST00000553059.1
ENST00000674345.1
ENST00000674466.1
CDS TCA 72 bp TTTGGCACTGTAAGGGTTCTCTGTATCGTATGGTGGTaGCAAAGCTTTGAAAATAACCTCTCCTCCAGTGCA +
Preference number: 6 (lower is better)
Translates to: FGTVRVLCIVWW*QSFENNLSSSA
Trigger: TGCACTGGAGGAGAGGTTATTTTCAAAGCTTTGTCACCACCATACGATACAGAGAACCCTTACAGTGCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
ENST00000674345.1
CDS CAA 90 bp GCTGCCCTTGACAATGAAATCATAGATTGCATAGTGTGTAAAATGTaGAGGCTCTTCGTTCAGGTCATTTCTCTGACAGGGACAAGACTG +
Preference number: 6 (lower is better)
Translates to: AALDNEIIDCIVCKM*RLFVQVISLTGTRL
Trigger: CAGTCTTGTCCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCATTGTCAAGGGCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000552603.1
ENST00000553059.1
ENST00000674345.1
CDS GCA 72 bp TTTTTCTATCTTACTTACAGTGTAGAGTTAAACAGGTaGCCTTACCTCTCCTCCAGTGCATGGAAAAGGACT +
Preference number: 6 (lower is better)
Translates to: FFYLTYSVELNR*PYLSSSAWKRT
Trigger: AGTCCTTTTCCATGCACTGGAGGAGAGGTAAGGGCACCTGTTTAACTCTACACTGTAAGTAAGATAGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000674466.1
CDS CAA 72 bp GGATTGTTTCTTTTCCAAAGTAGCCAAGGAAGCAGGTaGGCGTGTAAGGTTTCAGTTTTCTTATCAGCTTTC +
Preference number: 6 (lower is better)
Translates to: GLFLFQSSQGSR*ACKVSVFLSAF
Trigger: GAAAGCTGATAAGAAAACTGAAACCTTACACGCCAACCTGCTTCCTTGGCTACTTTGGAAAAGAAACAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000674345.1
CDS CAA 72 bp GACAATGAAATCATAGATTGCATAGTGTGTAAAATGTaGAGGCTCTTCGTTCAGGTCATTTCTCTGACAGGG +
Preference number: 6 (lower is better)
Translates to: DNEIIDCIVCKM*RLFVQVISLTG
Trigger: CCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCATTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000552603.1
ENST00000553059.1
ENST00000674345.1
CDS CAA 90 bp GAAGGTTTCCAGTGCTGGACAAAGCTTTTCATATTCACAATTAGTTaGCCTGTTCTTATATCCTCATGTCCTGCTACAAGGTATTCCAAA +
Preference number: 6 (lower is better)
Translates to: EGFQCWTKLFIFTIS*PVLISSCPATRYSK
Trigger: TTTGGAATACCTTGTAGCAGGACATGAGGATATAAGAACAGGCAAACTAATTGTGAATATGAAAAGCTTTGTCCAGCACTGGAAACCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5
ENST00000553059.1
CDS CAA 90 bp ATTCCAGTTTCCTGTCTGAGGTCTTCTTGCTCTAAAGTTTGTGTTTaGTACATAGACAAGTGCCATTATGTGCTATCCATCTTAATGCTA +
Preference number: 6 (lower is better)
Translates to: IPVSCLRSSCSKVCV*YIDKCHYVLSILML
Trigger: TAGCATTAAGATGGATAGCACATAATGGCACTTGTCTATGTACAAAACACAAACTTTAGAGCAAGAAGACCTCAGACAGGAAACTGGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000343702.9
ENST00000344911.8
ENST00000538383.5