Pregenerated sensors for NTM-IT (Homo sapiens)
Ensembl gene IDs: ENSG00000238262Ensembl transcript IDs: ENST00000421651.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CATCCGCAGCGGCTCAGCCTCGTGGCTGTGCAGCAGTCGCAGTGCTaGGCATCTGAGGCGGGTCTCCATGAGGCAGGAGTAGAAACCCTG | + |
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Preference number: 5 (lower is better) Translates to: HPQRLSLVAVQQSQC*ASEAGLHEAGVETL Trigger: CAGGGTTTCTACTCCTGCCTCATGGAGACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS GCA 90 bp | ATGCATCCGCAGCGGCTCAGCCTCGTGGCTGTGCAGCAGTCGCAGTaGTGGGCATCTGAGGCGGGTCTCCATGAGGCAGGAGTAGAAACC | + |
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Preference number: 5 (lower is better) Translates to: MHPQRLSLVAVQQSQ*WASEAGLHEAGVET Trigger: GGTTTCTACTCCTGCCTCATGGAGACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS GCA 90 bp | TTCCTAAGTCACGCATGCATCCGCAGCGGCTCAGCCTCGTGGCTGTaGAGCAGTCGCAGTGCTGGGCATCTGAGGCGGGTCTCCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: FLSHACIRSGSASWL*SSRSAGHLRRVSMR Trigger: CCTCATGGAGACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCATGCGTGACTTAGGAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS CCA 90 bp | CACACATTCCTAAGTCACGCATGCATCCGCAGCGGCTCAGCCTCGTaGCTGTGCAGCAGTCGCAGTGCTGGGCATCTGAGGCGGGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: HTFLSHACIRSGSAS*LCSSRSAGHLRRVS Trigger: GGAGACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCATGCGTGACTTAGGAATGTGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS TCA 90 bp | CCCAGAGTGACCCTTCCTGCTCCTGCTCATGCTTCCCCAGGTGGATaGGCTCCCACCTCTCTTGGAGCTGTGCTTTCCTCATCCTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: PRVTLPAPAHASPGG*APTSLGAVLSSSCC Trigger: GCAACAGGATGAGGAAAGCACAGCTCCAAGAGAGGTGGGAGCTCATCCACCTGGGGAAGCATGAGCAGGAGCAGGAAGGGTCACTCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS TCA 90 bp | GCTCTTTCTGCTGCATCTCAGGGTCCCATGAGCACAGTCCCAGAGTaGCCCTTCCTGCTCCTGCTCATGCTTCCCCAGGTGGATGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: ALSAASQGPMSTVPE*PFLLLLMLPQVDEL Trigger: GAGCTCATCCACCTGGGGAAGCATGAGCAGGAGCAGGAAGGGTCACTCTGGGACTGTGCTCATGGGACCCTGAGATGCAGCAGAAAGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS GCA 90 bp | CTGTTGCTGTGGCAAACACACCAGCACACATTCCTAAGTCACGCATaGATCCGCAGCGGCTCAGCCTCGTGGCTGTGCAGCAGTCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LLLWQTHQHTFLSHA*IRSGSASWLCSSRS Trigger: ACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCATGCGTGACTTAGGAATGTGTGCTGGTGTGTTTGCCACAGCAACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS CCA 90 bp | AGCTCCCACCTCTCTTGGAGCTGTGCTTTCCTCATCCTGTTGCTGTaGCAAACACACCAGCACACATTCCTAAGTCACGCATGCATCCGC | + |
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Preference number: 5 (lower is better) Translates to: SSHLSWSCAFLILLL*QTHQHTFLSHACIR Trigger: GCGGATGCATGCGTGACTTAGGAATGTGTGCTGGTGTGTTTGCCACAGCAACAGGATGAGGAAAGCACAGCTCCAAGAGAGGTGGGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS GCA 72 bp | CACGCATGCATCCGCAGCGGCTCAGCCTCGTGGCTGTaGAGCAGTCGCAGTGCTGGGCATCTGAGGCGGGTC | + |
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Preference number: 6 (lower is better) Translates to: HACIRSGSASWL*SSRSAGHLRRV Trigger: GACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCATGCGTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS GCA 72 bp | CAGCGGCTCAGCCTCGTGGCTGTGCAGCAGTCGCAGTaGTGGGCATCTGAGGCGGGTCTCCATGAGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: QRLSLVAVQQSQ*WASEAGLHEAG Trigger: TCCTGCCTCATGGAGACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS CCA 72 bp | CGGCTCAGCCTCGTGGCTGTGCAGCAGTCGCAGTGCTaGGCATCTGAGGCGGGTCTCCATGAGGCAGGAGTA | + |
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Preference number: 6 (lower is better) Translates to: RLSLVAVQQSQC*ASEAGLHEAGV Trigger: TACTCCTGCCTCATGGAGACCCGCCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS CCA 72 bp | CTAAGTCACGCATGCATCCGCAGCGGCTCAGCCTCGTaGCTGTGCAGCAGTCGCAGTGCTGGGCATCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LSHACIRSGSAS*LCSSRSAGHLR Trigger: CCTCAGATGCCCAGCACTGCGACTGCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCATGCGTGACTTAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS GCA 72 bp | TGGCAAACACACCAGCACACATTCCTAAGTCACGCATaGATCCGCAGCGGCTCAGCCTCGTGGCTGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: WQTHQHTFLSHA*IRSGSASWLCS Trigger: GCTGCACAGCCACGAGGCTGAGCCGCTGCGGATGCATGCGTGACTTAGGAATGTGTGCTGGTGTGTTTGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS TCA 72 bp | ACCCTTCCTGCTCCTGCTCATGCTTCCCCAGGTGGATaGGCTCCCACCTCTCTTGGAGCTGTGCTTTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: TLPAPAHASPGG*APTSLGAVLSS Trigger: TGAGGAAAGCACAGCTCCAAGAGAGGTGGGAGCTCATCCACCTGGGGAAGCATGAGCAGGAGCAGGAAGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS CAA 90 bp | TGGATGAGCTCCCACCTCTCTTGGAGCTGTGCTTTCCTCATCCTGTaGCTGTGGCAAACACACCAGCACACATTCCTAAGTCACGCATGC | + |
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Preference number: 6 (lower is better) Translates to: WMSSHLSWSCAFLIL*LWQTHQHTFLSHAC Trigger: GCATGCGTGACTTAGGAATGTGTGCTGGTGTGTTTGCCACAGCAACAGGATGAGGAAAGCACAGCTCCAAGAGAGGTGGGAGCTCATCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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| CDS CCA 72 bp | CTCTCTTGGAGCTGTGCTTTCCTCATCCTGTTGCTGTaGCAAACACACCAGCACACATTCCTAAGTCACGCA | + |
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Preference number: 6 (lower is better) Translates to: LSWSCAFLILLL*QTHQHTFLSHA Trigger: TGCGTGACTTAGGAATGTGTGCTGGTGTGTTTGCCACAGCAACAGGATGAGGAAAGCACAGCTCCAAGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421651.1 |
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