Pregenerated sensors for NSA2 (Homo sapiens)
Ensembl gene IDs: ENSG00000164346Ensembl transcript IDs: ENST00000296802.9, ENST00000610426.5
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTACTTATAGCAGACTCCAGAACACTACCTACAATGGGGTTTCAGTaGCTAGAAATCTTGAAGGTTTATGATTGCATCAAATTGAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: LLIADSRTLPTMGFQ*LEILKVYDCIKLSL Trigger: CAGGCTCAATTTGATGCAATCATAAACCTTCAAGATTTCTAGTCACTGAAACCCCATTGTAGGTAGTGTTCTGGAGTCTGCTATAAGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR TCA 90 bp | ACTACCTACAATGGGGTTTCAGTGACTAGAAATCTTGAAGGTTTATaGTTGCATCAAATTGAGCCTGTACTAATATCTAAATATCTGCTC | + |
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Preference number: 1 (lower is better) Translates to: TTYNGVSVTRNLEGL*LHQIEPVLISKYLL Trigger: GAGCAGATATTTAGATATTAGTACAGGCTCAATTTGATGCAATCATAAACCTTCAAGATTTCTAGTCACTGAAACCCCATTGTAGGTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR-3UTR TCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACACCTTCTGTCATCAAGTaGTTGTATCATCCTGGATCG | + |
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Preference number: 2 (lower is better) Translates to: KLPGVSIFIRLLELVIHTPSVIK*LYHPGS Trigger: CGATCCAGGATGATACAATCACTTGATGACAGAAGG...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR-3UTR TCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTAATCATTCAGTTTTATaGACATGGGGTCAAAGCGTA | + |
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Preference number: 2 (lower is better) Translates to: FQPASLVVECPVTLHIVLNHSVL*TWGQSV Trigger: TACGCTTTGACCCCATGTTCATAAAACTGAATGATT...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR-3UTR CCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTTTCTGCTTTATCCCTTaGGATTACCTTCTAAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: FQPASLVVECPVTLHIVLFCFIP*DYLLRF Trigger: AAACCTTAGAAGGTAATCCCAAGGGATAAAGCAGAA...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR-3UTR GCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACAAATTCACTAGACCTTTaGTGTACTGGATTTCACAGG | + |
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Preference number: 2 (lower is better) Translates to: KLPGVSIFIRLLELVIHTNSLDL*CTGFHR Trigger: CCTGTGAAATCCAGTACAGCAAAGGTCTAGTGAATT...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR-3UTR CCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACAGTGATTGTATCATCCTaGATCGTCATTTCCAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KLPGVSIFIRLLELVIHTVIVSS*IVISKE Trigger: TTCCTTGGAAATGACGATCCAGGATGATACAATCAC...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR CCA 72 bp | AGGCTTACCTTCTGTCATCAAGTGATTGTATCATCCTaGATCGTCATTTCCAAGGAACTAGCCTTTCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: RLTFCHQVIVSS*IVISKELAFLF Trigger: GAAAAGAAAGGCTAGTTCCTTGGAAATGACGATCCAGGATGATACAATCACTTGATGACAGAAGGTAAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR-3UTR CAA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACAGAATTCACTAGACCTTaGCTGTACTGGATTTCACAG | + |
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Preference number: 3 (lower is better) Translates to: KLPGVSIFIRLLELVIHTEFTRP*LYWISQ Trigger: CTGTGAAATCCAGTACAGCAAAGGTCTAGTGAATTC...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTCCTTCTGTCATCAAGTaGTTGTATCATCCTGGATCG | + |
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Preference number: 4 (lower is better) Translates to: FQPASLVVECPVTLHIVLPSVIK*LYHPGS Trigger: CGATCCAGGATGATACAATCACTTGATGACAGAAGG...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTAGAGGACTGAAAATGTaGTTTCAACCGGCTAGTCTA | + |
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Preference number: 4 (lower is better) Translates to: FQPASLVVECPVTLHIVLRGLKM*FQPASL Trigger: TAGACTAGCCGGTTGAAATCACATTTTCAGTCCTCT...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTTATGTGCTGCCGAAGTaGGCACTAAAAGACTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: FQPASLVVECPVTLHIVLYVLPK*ALKDFL Trigger: AAGAAAGTCTTTTAGTGCTCACTTCGGCAGCACATA...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR CCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTGTGATTGTATCATCCTaGATCGTCATTTCCAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: FQPASLVVECPVTLHIVLVIVSS*IVISKE Trigger: TTCCTTGGAAATGACGATCCAGGATGATACAATCAC...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTCGTCTTTCATGGGTGTaGTTAGTTACAAATGTTATG | + |
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Preference number: 4 (lower is better) Translates to: FQPASLVVECPVTLHIVLRLSWV*LVTNVM Trigger: CATAACATTTGTAACTAATCACACCCATGAAAGACG...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | ATTGTAAGAAAGGCTTACCTTCTGTCATCAAGTGATTGTATCATCCTGGATCGTACAATTACAGAGGACTaGAAATGTGATTTCAACCGG | + |
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Preference number: 4 (lower is better) Translates to: IVRKAYLLSSSDCIILDRTITED*KCDFNR Trigger: CCGGTTGAAATCACATTTTCAGTCCTCTGTAATTGT...ACGATCCAGGATGATACAATCACTTGATGACAGAAGGTAAGCCTTTCTTACAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACACACTGGCTCAACTCTTaGTGTGTGAATATAGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: KLPGVSIFIRLLELVIHTHWLNS*CVNIVE Trigger: CTCAACTATATTCACACATCAAGAGTTGAGCCAGTG...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACACATGGAAACGCTTCATaGATTTGTGTCATCCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: KLPGVSIFIRLLELVIHTHGNAS*ICVILA Trigger: TGCAAGGATGACACAAATTCATGAAGCGTTTCCATG...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR GCA 90 bp | ATTGTAAGAAAGGCTTACCTTCTGTCATCAAGTGATTGTATCATCCTGGATCGTAATTCACTAGACCTTTaGTGTACTGGATTTCACAGG | + |
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Preference number: 4 (lower is better) Translates to: IVRKAYLLSSSDCIILDRNSLDL*CTGFHR Trigger: CCTGTGAAATCCAGTACAGCAAAGGTCTAGTGAATT...ACGATCCAGGATGATACAATCACTTGATGACAGAAGGTAAGCCTTTCTTACAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| 3UTR CAA 72 bp | TATCTAAATATCTGCTCTTATGTTCTGCTTTATCCCTaGGGATTACCTTCTAAGGTTTGGTCACACCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: YLNICSYVLLYP*GLPSKVWSHQQ Trigger: TTGCTGGTGTGACCAAACCTTAGAAGGTAATCCCAAGGGATAAAGCAGAACATAAGAGCAGATATTTAGATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | ATTGTAAGAAAGGCTTACCTTCTGTCATCAAGTGATTGTATCATCCTGGATCGTAATCATTCAGTTTTATaGACATGGGGTCAAAGCGTA | + |
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Preference number: 4 (lower is better) Translates to: IVRKAYLLSSSDCIILDRNHSVL*TWGQSV Trigger: TACGCTTTGACCCCATGTTCATAAAACTGAATGATT...ACGATCCAGGATGATACAATCACTTGATGACAGAAGGTAAGCCTTTCTTACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACAACAATGGGGTTTCAGTaGCTAGAAATCTTGAAGGTT | + |
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Preference number: 4 (lower is better) Translates to: KLPGVSIFIRLLELVIHTTMGFQ*LEILKV Trigger: AACCTTCAAGATTTCTAGTCACTGAAACCCCATTGT...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR TCA 90 bp | ATTGTAAGAAAGGCTTACCTTCTGTCATCAAGTGATTGTATCATCCTGGATCGTCAGTCTATAGTAAGCTaGTGTCAGGTCAGTAAATTT | + |
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Preference number: 4 (lower is better) Translates to: IVRKAYLLSSSDCIILDRQSIVS*CQVSKF Trigger: AAATTTACTGACCTGACATCAGCTTACTATAGACTG...ACGATCCAGGATGATACAATCACTTGATGACAGAAGGTAAGCCTTTCTTACAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR CCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACATTACCTTCTAAGGTTTaGTCACACCAGCAAACTGAA | + |
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Preference number: 4 (lower is better) Translates to: KLPGVSIFIRLLELVIHTLPSKV*SHQQTE Trigger: TTCAGTTTGCTGGTGTGACCAAACCTTAGAAGGTAA...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR CCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACATTCTGCTTTATCCCTTaGGATTACCTTCTAAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: KLPGVSIFIRLLELVIHTFCFIP*DYLLRF Trigger: AAACCTTAGAAGGTAATCCCAAGGGATAAAGCAGAA...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR GCA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACATTGAAGGTTTATGATTaGATCAAATTGAGCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: KLPGVSIFIRLLELVIHTLKVYD*IKLSLY Trigger: GTACAGGCTCAATTTGATGCAATCATAAACCTTCAA...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR CAA 90 bp | TTTCAACCGGCTAGTCTAGTTGTTGAATGTCCAGTCACATTACACATAGTCCTTGAATTTGTGTCATCCTaGCACAGGGGCCATGCTAAT | + |
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Preference number: 5 (lower is better) Translates to: FQPASLVVECPVTLHIVLEFVSS*HRGHAN Trigger: ATTAGCATGGCCCCTGTGCAAGGATGACACAAATTC...AAGGACTATGTGTAATGTGACTGGACATTCAACAACTAGACTAGCCGGTTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR CAA 90 bp | ATTGTAAGAAAGGCTTACCTTCTGTCATCAAGTGATTGTATCATCCTGGATCGTGAATTCACTAGACCTTaGCTGTACTGGATTTCACAG | + |
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Preference number: 5 (lower is better) Translates to: IVRKAYLLSSSDCIILDREFTRP*LYWISQ Trigger: CTGTGAAATCCAGTACAGCAAAGGTCTAGTGAATTC...ACGATCCAGGATGATACAATCACTTGATGACAGAAGGTAAGCCTTTCTTACAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS-3UTR CAA 90 bp | AAATTACCTGGAGTCAGTATTTTTATTCGCCTTCTAGAACTTGTGATCCACACAAAACGCTTCATGAATTaGTGTCATCCTTGCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: KLPGVSIFIRLLELVIHTKRFMN*CHPCTG Trigger: CCCTGTGCAAGGATGACACAAATTCATGAAGCGTTT...TGTGTGGATCACAAGTTCTAGAAGGCGAATAAAAATACTGACTCCAGGTAATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000610426.5 |
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| CDS CAA 90 bp | TTTCCGCTTTTAGCTAGGAGGACGGAAGTTGCTGGCAGGCGGCATTaGGCCGGTACACCGCCGGAAGTGTGGAGGTGTGGCTGCCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: FPLLARRTEVAGRRH*AGTPPEVWRCGCPR Trigger: CCTCGGGCAGCCACACCTCCACACTTCCGGCGGTGTACCGGCCAAATGCCGCCTGCCAGCAACTTCCGTCCTCCTAGCTAAAAGCGGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000296802.9 |
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| CDS CCA 72 bp | GCATTTGGCCGGTACACCGCCGGAAGTGTGGAGGTGTaGCTGCCCGAGGCGGTAGAGCGGAGAAAGCCTATT | + |
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Preference number: 6 (lower is better) Translates to: AFGRYTAGSVEV*LPEAVERRKPI Trigger: AATAGGCTTTCTCCGCTCTACCGCCTCGGGCAGCCACACCTCCACACTTCCGGCGGTGTACCGGCCAAATGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000296802.9 |
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| CDS CAA 72 bp | TTAGCTAGGAGGACGGAAGTTGCTGGCAGGCGGCATTaGGCCGGTACACCGCCGGAAGTGTGGAGGTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: LARRTEVAGRRH*AGTPPEVWRCG Trigger: GCCACACCTCCACACTTCCGGCGGTGTACCGGCCAAATGCCGCCTGCCAGCAACTTCCGTCCTCCTAGCTAA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000296802.9 |
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| CDS CAA 72 bp | AGATACATTGCCTTTTGCCTAGGCTGGCGTCGAGACTaGAGGCCGTTGCAGACTTTGGCGCGGCTCGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: RYIAFCLGWRRD*RPLQTLARLAP Trigger: AGGCGCGAGCCGCGCCAAAGTCTGCAACGGCCTCAAGTCTCGACGCCAGCCTAGGCAAAAGGCAATGTATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000296802.9 |
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| CDS TCA 72 bp | CGGGACAGGAAAGAGTCACCCTTTAAAACGGCCGAGTaGAGAGCAAGAACCACGCAGCGGTTCCGAGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RDRKESPFKTAE*RARTTQRFRAS Trigger: AGAGGCTCGGAACCGCTGCGTGGTTCTTGCTCTTCACTCGGCCGTTTTAAAGGGTGACTCTTTCCTGTCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000296802.9 |
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| CDS CCA 72 bp | TTCTTTTCGTTTAGATACATTGCCTTTTGCCTAGGCTaGCGTCGAGACTTGAGGCCGTTGCAGACTTTGGCG | + |
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Preference number: 6 (lower is better) Translates to: FFSFRYIAFCLG*RRDLRPLQTLA Trigger: CGCCAAAGTCTGCAACGGCCTCAAGTCTCGACGCCAGCCTAGGCAAAAGGCAATGTATCTAAACGAAAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000296802.9 |
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