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Pregenerated sensors for NRTN (Homo sapiens)

Ensembl gene IDs: ENSG00000171119

Ensembl transcript IDs: ENST00000303212.2, ENST00000303212.3

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTATCTCAGTACAGTTATCGCGAGAGTCCCGGGGCCGCGCCGGCGTaGTCTACGCACGCGCAGTCTTTCGCGGGGCCGGCCAGTGGTGCC +
Preference number: 1 (lower is better)
Translates to: LSQYSYRESPGAAPA*STHAQSFAGPASGA
Trigger: GGCACCACTGGCCGGCCCCGCGAAAGACTGCGCGTGCGTAGAGCACGCCGGCGCGGCCCCGGGACTCTCGCGATAACTGTACTGAGATAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000303212.2
3UTR GCA 72 bp TACAGTTATCGCGAGAGTCCCGGGGCCGCGCCGGCGTaGTCTACGCACGCGCAGTCTTTCGCGGGGCCGGCC +
Preference number: 3 (lower is better)
Translates to: YSYRESPGAAPA*STHAQSFAGPA
Trigger: GGCCGGCCCCGCGAAAGACTGCGCGTGCGTAGAGCACGCCGGCGCGGCCCCGGGACTCTCGCGATAACTGTA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000303212.2
CDS GCA 90 bp TGGGCCAGGCGGGCAATCCGGGCGTCCAGGGTTCGAGGCAGGCGGTaGAGGGGGACCAGCGCAGGTCCGAGGCGGTGGCTGAGAAGCAGG +
Preference number: 5 (lower is better)
Translates to: WARRAIRASRVRGRR*RGTSAGPRRWLRSR
Trigger: CCTGCTTCTCAGCCACCGCCTCGGACCTGCGCTGGTCCCCCTGCACCGCCTGCCTCGAACCCTGGACGCCCGGATTGCCCGCCTGGCCCA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 90 bp ACGGAGCTGCAGAGCACTGAGGCCAAGGCCGCCGCCTTCCAGCGCTaGATCCTCAGCCTGCGGGCACGGGATGGTCAGCCGCACGCCCCG +
Preference number: 5 (lower is better)
Translates to: TELQSTEAKAAAFQR*ILSLRARDGQPHAP
Trigger: CGGGGCGTGCGGCTGACCATCCCGTGCCCGCAGGCTGAGGATGCAGCGCTGGAAGGCGGCGGCCTTGGCCTCAGTGCTCTGCAGCTCCGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS TCA 90 bp GAGGCAGGCGGTGCAGGGGGACCAGCGCAGGTCCGAGGCGGTGGCTaGGAAGCAGGCCCTCTCGACACATCCAGATGGACAGCACGGAGC +
Preference number: 5 (lower is better)
Translates to: EAGGAGGPAQVRGGG*EAGPLDTSRWTARS
Trigger: GCTCCGTGCTGTCCATCTGGATGTGTCGAGAGGGCCTGCTTCTCAGCCACCGCCTCGGACCTGCGCTGGTCCCCCTGCACCGCCTGCCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 90 bp GGCGCTGGGCCAGGACTCAGTGTGGGGCCTTTGACTTTGAACGCCTaGCGAATGGTCGATAATCACATGGGAATGGTCCCTCAAGGAACC +
Preference number: 5 (lower is better)
Translates to: GAGPGLSVGPLTLNA*RMVDNHMGMVPQGT
Trigger: GGTTCCTTGAGGGACCATTCCCATGTGATTATCGACCATTCGGCAGGCGTTCAAAGTCAAAGGCCCCACACTGAGTCCTGGCCCAGCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp CGGGCAATCCGGGCGTCCAGGGTTCGAGGCAGGCGGTaGAGGGGGACCAGCGCAGGTCCGAGGCGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: RAIRASRVRGRR*RGTSAGPRRWL
Trigger: CAGCCACCGCCTCGGACCTGCGCTGGTCCCCCTGCACCGCCTGCCTCGAACCCTGGACGCCCGGATTGCCCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp GAGGTCGTAGACGCGCGCGGCAGCCTCGCAGGCGCCTaGGCAGTAGCGGAACAGCACCGTCTCGTCGGACGC +
Preference number: 6 (lower is better)
Translates to: EVVDARGSLAGA*AVAEQHRLVGR
Trigger: GCGTCCGACGAGACGGTGCTGTTCCGCTACTGCGCAGGCGCCTGCGAGGCTGCCGCGCGCGTCTACGACCTC
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp CAGAGCACTGAGGCCAAGGCCGCCGCCTTCCAGCGCTaGATCCTCAGCCTGCGGGCACGGGATGGTCAGCCG +
Preference number: 6 (lower is better)
Translates to: QSTEAKAAAFQR*ILSLRARDGQP
Trigger: CGGCTGACCATCCCGTGCCCGCAGGCTGAGGATGCAGCGCTGGAAGGCGGCGGCCTTGGCCTCAGTGCTCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp GTCAGCTCGCGCAGCTCCATCGCATCCGGGGCCCCCTaGAGGAGTGCACGGTACTGGGCCAGGCGGGCAATC +
Preference number: 6 (lower is better)
Translates to: VSSRSSIASGAP*RSARYWARRAI
Trigger: GATTGCCCGCCTGGCCCAGTACCGTGCACTCCTGCAGGGGGCCCCGGATGCGATGGAGCTGCGCGAGCTGAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp GGCCCTCTCGACACATCCAGATGGACAGCACGGAGCTaGAGAGCACTGAGGCCAAGGCCGCCGCCTTCCAGC +
Preference number: 6 (lower is better)
Translates to: GPLDTSRWTARS*RALRPRPPPSS
Trigger: GCTGGAAGGCGGCGGCCTTGGCCTCAGTGCTCTGCAGCTCCGTGCTGTCCATCTGGATGTGTCGAGAGGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp GTCACAGGGAACCGCCCCCATCTGGGGGTCCCGGAGTaGCTTCCTGAGGAGCCGATGACAAGGTCCAGACTT +
Preference number: 6 (lower is better)
Translates to: VTGNRPHLGVPE*LPEEPMTRSRL
Trigger: AAGTCTGGACCTTGTCATCGGCTCCTCAGGAAGGCACTCCGGGACCCCCAGATGGGGGCGGTTCCCTGTGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp CAAGGAACCATTGAACAAGGAAGGGGTTGGCCTCCGTaGCAGGAGTCACAGGGAACCGCCCCCATCTGGGGG +
Preference number: 6 (lower is better)
Translates to: QGTIEQGRGWPP*QESQGTAPIWG
Trigger: CCCCCAGATGGGGGCGGTTCCCTGTGACTCCTGGCACGGAGGCCAACCCCTTCCTTGTTCAATGGTTCCTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp GAGGAGAATGGCATCACAGGCAGGGGACACAGCCAGTaGAAAGGCCCCGAGGCCAGACTGAGTGTGGCGTAT +
Preference number: 6 (lower is better)
Translates to: EENGITGRGHSQ*KGPEARLSVAY
Trigger: ATACGCCACACTCAGTCTGGCCTCGGGGCCTTTGCACTGGCTGTGTCCCCTGCCTGTGATGCCATTCTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS CAA 90 bp CGGGCACAGGGCGCTGGGCCAGGACTCAGTGTGGGGCCTTTGACTTaGAACGCCTGCCGAATGGTCGATAATCACATGGGAATGGTCCCT +
Preference number: 6 (lower is better)
Translates to: RAQGAGPGLSVGPLT*NACRMVDNHMGMVP
Trigger: AGGGACCATTCCCATGTGATTATCGACCATTCGGCAGGCGTTCAAAGTCAAAGGCCCCACACTGAGTCCTGGCCCAGCGCCCTGTGCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS CAA 72 bp GCACAGGGCGCTGGGCCAGGACTCAGTGTGGGGCCTTaGACTTTGAACGCCTGCCGAATGGTCGATAATCAC +
Preference number: 6 (lower is better)
Translates to: AQGAGPGLSVGP*TLNACRMVDNH
Trigger: GTGATTATCGACCATTCGGCAGGCGTTCAAAGTCAAAGGCCCCACACTGAGTCCTGGCCCAGCGCCCTGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS CAA 90 bp AGCCAACGGGCACAGGGCGCTGGGCCAGGACTCAGTGTGGGGCCTTaGACTTTGAACGCCTGCCGAATGGTCGATAATCACATGGGAATG +
Preference number: 6 (lower is better)
Translates to: SQRAQGAGPGLSVGP*TLNACRMVDNHMGM
Trigger: CATTCCCATGTGATTATCGACCATTCGGCAGGCGTTCAAAGTCAAAGGCCCCACACTGAGTCCTGGCCCAGCGCCCTGTGCCCGTTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS CAA 72 bp GGCGCTGGGCCAGGACTCAGTGTGGGGCCTTTGACTTaGAACGCCTGCCGAATGGTCGATAATCACATGGGA +
Preference number: 6 (lower is better)
Translates to: GAGPGLSVGPLT*NACRMVDNHMG
Trigger: TCCCATGTGATTATCGACCATTCGGCAGGCGTTCAAAGTCAAAGGCCCCACACTGAGTCCTGGCCCAGCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS CAA 90 bp GCCGAATGGTCGATAATCACATGGGAATGGTCCCTCAAGGAACCATaGAACAAGGAAGGGGTTGGCCTCCGTGCCAGGAGTCACAGGGAA +
Preference number: 6 (lower is better)
Translates to: AEWSIITWEWSLKEP*NKEGVGLRARSHRE
Trigger: TTCCCTGTGACTCCTGGCACGGAGGCCAACCCCTTCCTTGTTCAATGGTTCCTTGAGGGACCATTCCCATGTGATTATCGACCATTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3
CDS GCA 72 bp CCAGGACTCAGTGTGGGGCCTTTGACTTTGAACGCCTaGCGAATGGTCGATAATCACATGGGAATGGTCCCT +
Preference number: 6 (lower is better)
Translates to: PGLSVGPLTLNA*RMVDNHMGMVP
Trigger: AGGGACCATTCCCATGTGATTATCGACCATTCGGCAGGCGTTCAAAGTCAAAGGCCCCACACTGAGTCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000303212.3