RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NRIP2 (Homo sapiens)

Ensembl gene IDs: ENSG00000053702

Ensembl transcript IDs: ENST00000337508.9, ENST00000542386.1, ENST00000542990.5

Found 171 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTGGGGTCTaGAGTTACAGAAGCAGCAGGAGGCAGACAAGGAAAGGCACAGCA +
Preference number: 1 (lower is better)
Translates to: MEKQLSRGLAIGPGV*SYRSSRRQTRKGTA
Trigger: TGCTGTGCCTTTCCTTGTCTGCCTCCTGCTGCTTCTGTAACTGCAGACCCCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp GAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACTCGTCCTaGGGAGTAGGACAGCTGCTGAGAAGCAGAGAGGAATGCGGCCAG +
Preference number: 1 (lower is better)
Translates to: ESESWHRGPSSENSS*GVGQLLRSREECGQ
Trigger: CTGGCCGCATTCCTCTCTGCTTCTCAGCAGCTGTCCTACTCCCCAGGACGAGTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp TATTCCAATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTaGGGTCTGCAGTTACAGAAGCAGCAGGAGGCAGACAAGGAAAGG +
Preference number: 1 (lower is better)
Translates to: YSNGEAAEPRACHWA*GLQLQKQQEADKER
Trigger: CCTTTCCTTGTCTGCCTCCTGCTGCTTCTGTAACTGCAGACCCCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCATTGGAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp AGCAGGAGGCAGACAAGGAAAGGCACAGCACAAGACCCAGGAAAGTaGACCTTGTGGAGCAAGGCAGTGAGGGCGAGGAAAGCTTTTAGG +
Preference number: 1 (lower is better)
Translates to: SRRQTRKGTAQDPGK*TLWSKAVRARKAFR
Trigger: CCTAAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTCCTTGTCTGCCTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp AGAGACATGGTGGTGTGGGAAGTTGAGTTGTGTTTGGGGTGGTATTaGGTGATGGACAAGGACAGCAGTCAGCAGAGCCTTCGACCCAGC +
Preference number: 1 (lower is better)
Translates to: RDMVVWEVELCLGWY*VMDKDSSQQSLRPS
Trigger: GCTGGGTCGAAGGCTCTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAACTTCCCACACCACCATGTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR TCA 90 bp CATGGCGGTCTAGTTGTGGGAGATAATGAGGCCCAGAAGGTGTGGTaGGAGACATGGTGGTGTGGGAAGTTGAGTTGTGTTTGGGGTGGT +
Preference number: 1 (lower is better)
Translates to: HGGLVVGDNEAQKVW*ETWWCGKLSCVWGG
Trigger: ACCACCCCAAACACAACTCAACTTCCCACACCACCATGTCTCTCACCACACCTTCTGGGCCTCATTATCTCCCACAACTAGACCGCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp GTGGTGAGAGACATGGTGGTGTGGGAAGTTGAGTTGTGTTTGGGGTaGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGAGCCTTCGA +
Preference number: 1 (lower is better)
Translates to: VVRDMVVWEVELCLG*YWVMDKDSSQQSLR
Trigger: TCGAAGGCTCTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAACTTCCCACACCACCATGTCTCTCACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp CAGACAAGGAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTaGAGCAAGGCAGTGAGGGCGAGGAAAGCTTTTAGGATTTTGAGA +
Preference number: 1 (lower is better)
Translates to: QTRKGTAQDPGKWTL*SKAVRARKAFRILR
Trigger: TCTCAAAATCCTAAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTCCTTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR TCA 90 bp TGTCTTTTTGCTTTGGCAAAGCCTGGCAGGGGGTTAGAAAGCCACTaGTTCCAGGACAATACAAGCTTAAGCTCAAGAGGCCAGAGATGG +
Preference number: 1 (lower is better)
Translates to: CLFALAKPGRGLESH*FQDNTSLSSRGQRW
Trigger: CCATCTCTGGCCTCTTGAGCTTAAGCTTGTATTGTCCTGGAATCAGTGGCTTTCTAACCCCCTGCCAGGCTTTGCCAAAGCAAAAAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp CACACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTaGAAACGGATAAATACCTATAGCGTTAATAGCAGAAGTATGTCC +
Preference number: 1 (lower is better)
Translates to: HTHARLRGSVGTKSQ*KRINTYSVNSRSMS
Trigger: GGACATACTTCTGCTATTAACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR TCA 90 bp GCCCAAGCAGGCACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTaGTTTGGCTTTGCTTTTCTTGGGAGGAAGATGAATCAGAATCCT +
Preference number: 1 (lower is better)
Translates to: AQAGTPLCLGSYLWS*FGFAFLGRKMNQNP
Trigger: AGGATTCTGATTCATCTTCCTCCCAAGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTGCCTGCTTGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp GTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTTaGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGT +
Preference number: 1 (lower is better)
Translates to: VLRFLSVVLIWLCFS*EEDESESWHRGPSS
Trigger: ACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 90 bp CATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGATCTaGCGTCTTAAGGTTCGGGTTCTTCTCTTCACAGTGAATTCAAAA +
Preference number: 1 (lower is better)
Translates to: HDLRDSNQPERLSGI*RLKVRVLLFTVNSK
Trigger: TTTTGAATTCACTGTGAAGAGAAGAACCCGAACCTTAAGACGCCAGATCCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp GGGCAGGCCAGGTGTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGCCCAGAAGGTGTGGTaGGAGACATGGTGGTGTGGG +
Preference number: 2 (lower is better)
Translates to: GQARCHRQLLASRFFSNPAQKVW*ETWWCG
Trigger: CCCACACCACCATGTCTCTCACCACACCTTCTGGGC...TGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 90 bp GGGAGGCAGCTGAGAAAGGGCAGGCCAGGTGTCACAGGCAGCTCCTaGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGA +
Preference number: 2 (lower is better)
Translates to: GRQLRKGRPGVTGSS*HPGSSLTQSTPGSR
Trigger: TCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCCTTTCTCAGCTGCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp CAGTTCTCTACAAGGCTCTTCCACACACACACACGCAAGGCTCAGGGGCTCGGTAGGAATGCGGCCAGCTaGGGAAAATGGGACAGCAGG +
Preference number: 2 (lower is better)
Translates to: QFSTRLFHTHTRKAQGLGRNAAS*GKWDSR
Trigger: CCTGCTGTCCCATTTTCCCCAGCTGGCCGCATTCCT...ACCGAGCCCCTGAGCCTTGCGTGTGTGTGTGTGGAAGAGCCTTGTAGAGAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp CTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTCCTTCACCCAGGCTaGAGTCCGATGGCACGAACT +
Preference number: 2 (lower is better)
Translates to: LTQSTPGSRLFQPNGPSSLLHPG*SPMART
Trigger: AGTTCGTGCCATCGGACTCCAGCCTGGGTGAAGGAG...GGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGGTGAAGTCTGAGTGGTaGCAACCTCACTGTCCTGTC +
Preference number: 2 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLVKSEW*QPHCPV
Trigger: GACAGGACAGTGAGGTTGTCACCACTCAGACTTCAC...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGTGCTTTGGCAAAGCCTaGCAGGGGGTTAGAAAGCCA +
Preference number: 2 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLCFGKA*QGVRKP
Trigger: TGGCTTTCTAACCCCCTGCCAGGCTTTGCCAAAGCA...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR GCA 90 bp GAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTGGAGCAAGGCAGTGAGCCTCACTGTCCTGTCTaGCTCACAGGAGCAGTTCTC +
Preference number: 2 (lower is better)
Translates to: ERHSTRPRKVDLVEQGSEPHCPV*LTGAVL
Trigger: GAGAACTGCTCCTGTGAGGCAGACAGGACAGTGAGG...CTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCTGTCTTTTTGCTTTaGCAAAGCCTGGCAGGGGGT +
Preference number: 2 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGSVFLL*QSLAGG
Trigger: ACCCCCTGCCAGGCTTTGCCAAAGCAAAAAGACAGA...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGTTCTTGGGAGGAAGATaGATCAGAATCCTGGCATCG +
Preference number: 2 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLFLGGR*IRILAS
Trigger: CGATGCCAGGATTCTGATTCATCTTCCTCCCAAGAA...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp AGAGTTTATTCCAATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTGGTGTGGAGCAAGGCAGTaGGGGCGAGGAAAGCTTTTA +
Preference number: 2 (lower is better)
Translates to: RVYSNGEAAEPRACHWAWCGARQ*GRGKLL
Trigger: TAAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACA...CCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCATTGGAATAAACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCGGCTCAGGGGCTCGGTaGGTACAAAAAGCCAGTGGA +
Preference number: 2 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFGSGAR*VQKASG
Trigger: TCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCC...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCAAAGCCTCTGTCTCCTaGCAGACCCCAAACTTTAAA +
Preference number: 2 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGKASVS*QTPNFK
Trigger: TTTAAAGTTTGGGGTCTGTCAGGAGACAGAGGCTTT...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 90 bp AGGCAGACAAGGAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTaGTGGAGCAAGGCAGTGAGGGCGAGGAAAGCTTTTAGGATTTTG +
Preference number: 2 (lower is better)
Translates to: RQTRKGTAQDPGKWT*WSKAVRARKAFRIL
Trigger: CAAAATCCTAAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTCCTTGTCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR GCA 90 bp GTTGAGTTGTGTTTGGGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGGCAGGCACCCCATTGTaGTTAGGTTCCTATCTGTGG +
Preference number: 2 (lower is better)
Translates to: VELCLGWYWVMDKDSSQQAGTPL*LGSYLW
Trigger: CCACAGATAGGAACCTAAGCACAATGGGGTGCCTGC...CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp AGAGTTTATTCCAATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTGGGAGTTGTGTTTGGGGTaGTATTGGGTGATGGACAAG +
Preference number: 2 (lower is better)
Translates to: RVYSNGEAAEPRACHWAWELCLG*YWVMDK
Trigger: CTTGTCCATCACCCAATACCACCCCAAACACAACTC...CCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCATTGGAATAAACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTTCCCCCACTCAACTGTaGGCAGATGTGCACAGACTC +
Preference number: 2 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVSPTQL*ADVHRL
Trigger: GAGTCTGTGCACATCTGCTCACAGTTGAGTGGGGGA...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATCGCTCTTTGTTGTATTaGATTCTGGCTGTTTCTTCC +
Preference number: 2 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDRSLLY*ILAVSS
Trigger: GGAAGAAACAGCCAGAATTCAATACAACAAAGAGCG...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp TCTTGGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACCAAGGTCTTTCCCTCTaGGGACTGACTGAGACAGCA +
Preference number: 2 (lower is better)
Translates to: SWEEDESESWHRGPSSENQGLSL*GLTETA
Trigger: TGCTGTCTCAGTCAGTCCCCAGAGGGAAAGACCTTG...GTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCGATGAATCAGAATCCTaGCATCGTGGGCCCTCTAGT +
Preference number: 2 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFDESES*HRGPSS
Trigger: ACTAGAGGGCCCACGATGCCAGGATTCTGATTCATC...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATTCCTATCTGTGGTCTTaGTTTGGCTTTGCTTTTCTT +
Preference number: 2 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDSYLWS*FGFAFL
Trigger: AAGAAAAGCAAAGCCAAATCAAGACCACAGATAGGA...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR GCA 90 bp TTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGAAGCCTCTGTCTTTTTaGTTTGGCAAAGCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: LHPGSSLTQSTPGSRLFQKPLSF*FGKAWQ
Trigger: CTGCCAGGCTTTGCCAAAGCAAAAAGACAGAGGCTT...CTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR TCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCAGAATGCTGAATAGGTaGAGTCTGAGTGGTGACAAC +
Preference number: 2 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFRMLNR*SLSGDN
Trigger: GTTGTCACCACTCAGACTTCACCTATTCAGCATTCT...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTGGTCAGGGAGGTGATTaGAAGGGCAGACACCATAGT +
Preference number: 2 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSGQGGD*KGRHHS
Trigger: ACTATGGTGTCTGCCCTTCCAATCACCTCCCTGACC...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR GCA 90 bp TTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGGTCTTGATTTGGCTTTaGTTTTCTTGGGAGGAAGAT +
Preference number: 2 (lower is better)
Translates to: LHPGSSLTQSTPGSRLFQVLIWL*FSWEED
Trigger: ATCTTCCTCCCAAGAAAAGCAAAGCCAAATCAAGAC...CTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCTGGCTTTGCTTTTCTTaGGAGGAAGATGAATCAGAA +
Preference number: 2 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFWLCFS*EEDESE
Trigger: TTCTGATTCATCTTCCTCCCAAGAAAAGCAAAGCCA...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CCA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTGGTAATCAAACTAACTaGCTTCAGACATTTGCAGCC +
Preference number: 2 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSGNQTN*LQTFAA
Trigger: GGCTGCAAATGTCTGAAGCCAGTTAGTTTGATTACC...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 90 bp CGGATAAATACCTATAGCGTTAATAGCAGAAGTATGTCCAAGGTTTaGCACAGGGTAATCAAACTAACTGGCTTCAGACATTTGCAGCCA +
Preference number: 2 (lower is better)
Translates to: RINTYSVNSRSMSKV*HRVIKLTGFRHLQP
Trigger: TGGCTGCAAATGTCTGAAGCCAGTTAGTTTGATTACCCTGTGCAAAACCTTGGACATACTTCTGCTATTAACGCTATAGGTATTTATCCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CAA 90 bp GGGCAGGCCAGGTGTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAAAAGCCTCTGTCTTTTaGCTTTGGCAAAGCCTGGCA +
Preference number: 3 (lower is better)
Translates to: GQARCHRQLLASRFFSNPKASVF*LWQSLA
Trigger: TGCCAGGCTTTGCCAAAGCAAAAAGACAGAGGCTTT...TGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 72 bp CAGACAAGGAAAGGCACAGCACAAGACCCAGGAAAGTaGACCTTGTGGAGCAAGGCAGTGAGGGCGAGGAAA +
Preference number: 3 (lower is better)
Translates to: QTRKGTAQDPGK*TLWSKAVRARK
Trigger: TTTCCTCGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTCCTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 72 bp AAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTaGAGCAAGGCAGTGAGGGCGAGGAAAGCTTTTAGG +
Preference number: 3 (lower is better)
Translates to: KGTAQDPGKWTL*SKAVRARKAFR
Trigger: CCTAAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CAA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCGGTCTTGATTTGGCTTaGCTTTTCTTGGGAGGAAGA +
Preference number: 3 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGGLDLA*LFLGGR
Trigger: TCTTCCTCCCAAGAAAAGCAAAGCCAAATCAAGACC...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 72 bp GTGGTGTGGGAAGTTGAGTTGTGTTTGGGGTGGTATTaGGTGATGGACAAGGACAGCAGTCAGCAGAGCCTT +
Preference number: 3 (lower is better)
Translates to: VVWEVELCLGWY*VMDKDSSQQSL
Trigger: AAGGCTCTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAACTTCCCACACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 72 bp GACATGGTGGTGTGGGAAGTTGAGTTGTGTTTGGGGTaGTATTGGGTGATGGACAAGGACAGCAGTCAGCAG +
Preference number: 3 (lower is better)
Translates to: DMVVWEVELCLG*YWVMDKDSSQQ
Trigger: CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAACTTCCCACACCACCATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CAA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTGTCCAGGGACATAGGTaGGTGAGGCATGGCGGTCTA +
Preference number: 3 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVVQGHR*VRHGGL
Trigger: TAGACCGCCATGCCTCACCAACCTATGTCCCTGGAC...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CAA 90 bp GGGCAGGCCAGGTGTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAAGTATGTCCAAGGTTTaGCACAGGGTAATCAAACTA +
Preference number: 3 (lower is better)
Translates to: GQARCHRQLLASRFFSNPSMSKV*HRVIKL
Trigger: TAGTTTGATTACCCTGTGCAAAACCTTGGACATACT...TGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR-3UTR CAA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTGTGTTTGGGGTGGTATaGGGTGATGGACAAGGACAG +
Preference number: 3 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSVFGVV*GDGQGQ
Trigger: CTGTCCTTGTCCATCACCCAATACCACCCCAAACAC...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR TCA 72 bp GCTTTGGCAAAGCCTGGCAGGGGGTTAGAAAGCCACTaGTTCCAGGACAATACAAGCTTAAGCTCAAGAGGC +
Preference number: 3 (lower is better)
Translates to: ALAKPGRGLESH*FQDNTSLSSRG
Trigger: GCCTCTTGAGCTTAAGCTTGTATTGTCCTGGAATCAGTGGCTTTCTAACCCCCTGCCAGGCTTTGCCAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 72 bp AGAGACTCAAACCAGCCAGAAAGACTCTCAGGGATCTaGCGTCTTAAGGTTCGGGTTCTTCTCTTCACAGTG +
Preference number: 3 (lower is better)
Translates to: RDSNQPERLSGI*RLKVRVLLFTV
Trigger: CACTGTGAAGAGAAGAACCCGAACCTTAAGACGCCAGATCCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CCA 72 bp GCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTaGAAACGGATAAATACCTATAGCGTTAATAGCAGA +
Preference number: 3 (lower is better)
Translates to: ARLRGSVGTKSQ*KRINTYSVNSR
Trigger: TCTGCTATTAACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCGAGTGGGCCAGGGGCTaGTCGGTGGGGGCGTCACCG +
Preference number: 4 (lower is better)
Translates to: LTQSTPGSRLFQPNGPSSEWARG*SVGASP
Trigger: CGGTGACGCCCCCACCGAGCAGCCCCTGGCCCACTC...GGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGAGGTGCCGAGCCTCTTaGGGCTGTCCAGCGGGAGCA +
Preference number: 4 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLRCRAS*GCPAGA
Trigger: TGCTCCCGCTGGACAGCCTCAAGAGGCTCGGCACCT...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTGTTTGAGCCGGCGCTaGTGGCTCAGGTGGGCTCGG +
Preference number: 4 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGCLSRR*WLRWAR
Trigger: CCGAGCCCACCTGAGCCAGCAGCGCCGGCTCAAACA...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGGCTGAGCCGAGGGCTTaGCATTGGGCCTGGGGTCTG +
Preference number: 4 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLAEPRA*HWAWGL
Trigger: CAGACCCCAGGCCCAATGGCAAGCCCTCGGCTCAGC...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCGCTCATGGCCCCTGCTaGAGGAGTGGGCCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: LTQSTPGSRLFQPNGPSSAHGPC*RSGPGA
Trigger: AGCCCCTGGCCCACTCCTCCAGCAGGGGCCATGAGC...GGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp AAGAGCCCCCGTTCCCCACACGCCTCTTCTTCTAAGGCAAGGTCTTTCCCTCTGACTGGGTGGCCTGTTTaGGCCGGCGCTGCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: KSPRSPHASSSKARSFPLTGWPV*AGAAGS
Trigger: TGAGCCAGCAGCGCCGGCTCAAACAGGCCACCCAGT...CAGAGGGAAAGACCTTGCCTTAGAAGAAGAGGCGTGTGGGGAACGGGGGCTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp AGAGTTTATTCCAATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTGGGGTGCTCATGGCCCCTaGTGGAGGAGTGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: RVYSNGEAAEPRACHWAWGAHGP*WRSGPG
Trigger: CCCTGGCCCACTCCTCCAGCAGGGGCCATGAGCACC...CCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCATTGGAATAAACTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCCTGCTCTCCTGGCCATaGATCAGGTCCTGCATCCGG +
Preference number: 4 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGLLSWP*IRSCIR
Trigger: CCGGATGCAGGACCTGATTCATGGCCAGGAGAGCAG...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATCGAAGCTGTGCCTCCTaGCCCCTCGTCCTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDRSCAS*PLVLAS
Trigger: AGAAGCCAGGACGAGGGGGCAGGAGGCACAGCTTCG...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GTTGAGTTGTGTTTGGGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGCCAGGGGCTGCTCGGTaGGGGCGTCACCGAGTCCTC +
Preference number: 4 (lower is better)
Translates to: VELCLGWYWVMDKDSSQQPGAAR*GRHRVL
Trigger: GAGGACTCGGTGACGCCCCCACCGAGCAGCCCCTGG...CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATCCTGCTTGGTGCTCATaGCCCCTGCTGGAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDPAWCS*PLLEEW
Trigger: CCACTCCTCCAGCAGGGGCCATGAGCACCAAGCAGG...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GGGCAGGCCAGGTGTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGGAAAGTGGACCTTGTaGAGCAAGGCAGTGAGGGCG +
Preference number: 4 (lower is better)
Translates to: GQARCHRQLLASRFFSNPGKWTL*SKAVRA
Trigger: CGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCC...TGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAGCTGTAGCTCCAACTaGTCCACCTGGGTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDSCSSN*STWVGG
Trigger: GCCCCCAACCCAGGTGGAGCAGTTGGAGCTACAGCT...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp GTTGAGTTGTGTTTGGGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGCGGGGAGGCTCCCCCTaGAGCCAATTCGGGTTTCCC +
Preference number: 4 (lower is better)
Translates to: VELCLGWYWVMDKDSSQQRGGSP*SQFGFP
Trigger: GGGAAACCCGAATTGGCTTCAGGGGGAGCCTCCCCG...CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp GAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTGGAGCAAGGCAGTGAGCCTCTGGGGACTGACTaGGACAGCAGTCACTGGCCA +
Preference number: 4 (lower is better)
Translates to: ERHSTRPRKVDLVEQGSEPLGTD*DSSHWP
Trigger: TGGCCAGTGACTGCTGTCTCAGTCAGTCCCCAGAGG...CTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCGTCTTTGGATCACACTaGGCGGCTGCAAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGVFGSH*AAASPW
Trigger: CCAAGGACTTGCAGCCGCGCAGTGTGATCCAAAGAC...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GTTGAGTTGTGTTTGGGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGTTGAGCCGGCGCTGCTaGCTCAGGTGGGCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: VELCLGWYWVMDKDSSQQLSRRC*LRWARS
Trigger: AGACCGAGCCCACCTGAGCCAGCAGCGCCGGCTCAA...CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AAGAGCCCCCGTTCCCCACACGCCTCTTCTTCTAAGGCAAGGTCTTTCCCTCTGAGGAATGCGGCCAGCTaGGGAAAATGGGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: KSPRSPHASSSKARSFPLRNAAS*GKWDSR
Trigger: CCTGCTGTCCCATTTTCCCCAGCTGGCCGCATTCCT...CAGAGGGAAAGACCTTGCCTTAGAAGAAGAGGCGTGTGGGGAACGGGGGCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 72 bp CTGAGAAAGGGCAGGCCAGGTGTCACAGGCAGCTCCTaGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCA +
Preference number: 4 (lower is better)
Translates to: LRKGRPGVTGSS*HPGSSLTQSTP
Trigger: TGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCCTTTCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGTGTGGAGCAAGGCAGTaGGGGCGAGGAAAGCTTTTA +
Preference number: 4 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLCGARQ*GRGKLL
Trigger: TAAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACA...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGTCGGTCTCGAAGCTGTaGCTCCTGCCCCCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: LHPGSSLTQSTPGSRLFQSVSKL*LLPPRP
Trigger: AGGACGAGGGGGCAGGAGGCACAGCTTCGAGACCGA...CTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp GATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACTCGTCCTGGGGATCGGCCGAGTCCTTGTaGAGGAACTGGGTGGCCTGT +
Preference number: 4 (lower is better)
Translates to: DESESWHRGPSSENSSWGSAESL*RNWVAC
Trigger: ACAGGCCACCCAGTTCCTGCACAAGGACTCGGCCGA...TCCCCAGGACGAGTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp GAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTGGAGCAAGGCAGTGAGAGCATCCACCACCTGTaGCGAGCACACCACAGTCTC +
Preference number: 4 (lower is better)
Translates to: ERHSTRPRKVDLVEQGSESIHHL*RAHHSL
Trigger: GAGACTGTGGTGTGCTCGGCACAGGTGGTGGATGCT...CTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATATTGGGCCTGGGGTCTaGAGTTACAGAAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDIGPGV*SYRSSR
Trigger: CCTGCTGCTTCTGTAACTGCAGACCCCAGGCCCAAT...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp GTTGAGTTGTGTTTGGGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGGCCCAGAAGGTGTGGTaGGAGACATGGTGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: VELCLGWYWVMDKDSSQQAQKVW*ETWWCG
Trigger: CCCACACCACCATGTCTCTCACCACACCTTCTGGGC...CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CAGTTCTCTACAAGGCTCTTCCACACACACACACGCAAGGCTCAGGGGCTCGGTTCACCGAGTCCTCTCTaGTTCTTCCTGCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: QFSTRLFHTHTRKAQGLGSPSPL*FFLPVS
Trigger: AGAGACAGGCAGGAAGAAGCAGAGAGGACTCGGTGA...ACCGAGCCCCTGAGCCTTGCGTGTGTGTGTGTGGAAGAGCCTTGTAGAGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCTCTCTCCTGGCCTCCTaGTTGGTGCTCATGGCCCCT +
Preference number: 4 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFSLLAS*LVLMAP
Trigger: AGGGGCCATGAGCACCAAGCAGGAGGCCAGGAGAGA...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATCCTTGTGCAGGAACTaGGTGGCCTGTTTGAGCCGG +
Preference number: 4 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKSLCRN*VACLSR
Trigger: CCGGCTCAAACAGGCCACCCAGTTCCTGCACAAGGA...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGGTTGACCAGAAGAGCTaGAATCTCTGTCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLVDQKS*NLCPAG
Trigger: ACCAGCAGGACAGAGATTCCAGCTCTTCTGGTCAAC...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATCTAAGCAGCTGGTCCTaGCACTTGCAGTTGACCAGA +
Preference number: 4 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDLSSWS*HLQLTR
Trigger: TCTGGTCAACTGCAAGTGCCAGGACCAGCTGCTTAG...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCGAGATCCGATTGTATTaGGTGCCTGTGTCAACGGCC +
Preference number: 4 (lower is better)
Translates to: LTQSTPGSRLFQPNGPSSEIRLY*VPVSTA
Trigger: GGCCGTTGACACAGGCACCCAATACAATCGGATCTC...GGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AAGAGCCCCCGTTCCCCACACGCCTCTTCTTCTAAGGCAAGGTCTTTCCCTCTGCAAGGTCTTTCCCTCTaGGGACTGACTGAGACAGCA +
Preference number: 4 (lower is better)
Translates to: KSPRSPHASSSKARSFPLQGLSL*GLTETA
Trigger: TGCTGTCTCAGTCAGTCCCCAGAGGGAAAGACCTTG...CAGAGGGAAAGACCTTGCCTTAGAAGAAGAGGCGTGTGGGGAACGGGGGCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATGGTCAGGGAGGTGATTaGAAGGGCAGACACCATAGT +
Preference number: 4 (lower is better)
Translates to: HTRKAQGLGGYKKPVETDGQGGD*KGRHHS
Trigger: ACTATGGTGTCTGCCCTTCCAATCACCTCCCTGACC...ATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAAGGCTCAGGGGCTCGGTaGGTACAAAAAGCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKGSGAR*VQKASG
Trigger: TCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCC...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TCTTGGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACCTAACCCCAGGCGGCTaGGACATCCAGCAGAGATCC +
Preference number: 4 (lower is better)
Translates to: SWEEDESESWHRGPSSENLTPGG*DIQQRS
Trigger: GGATCTCTGCTGGATGTCTCAGCCGCCTGGGGTTAG...GTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp CAGTTCTCTACAAGGCTCTTCCACACACACACACGCAAGGCTCAGGGGCTCGGTGGCACAAGTGATAAGTaGGCCCTCTCCTTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: QFSTRLFHTHTRKAQGLGGTSDK*ALSFPS
Trigger: AGAAGGAAAGGAGAGGGCTCACTTATCACTTGTGCC...ACCGAGCCCCTGAGCCTTGCGTGTGTGTGTGTGGAAGAGCCTTGTAGAGAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AAGAGCCCCCGTTCCCCACACGCCTCTTCTTCTAAGGCAAGGTCTTTCCCTCTGAGACTCTCAGGGATCTaGCGTCTTAAGGTTCGGGTT +
Preference number: 4 (lower is better)
Translates to: KSPRSPHASSSKARSFPLRLSGI*RLKVRV
Trigger: AACCCGAACCTTAAGACGCCAGATCCCTGAGAGTCT...CAGAGGGAAAGACCTTGCCTTAGAAGAAGAGGCGTGTGGGGAACGGGGGCTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGATGAGCCATTGCGCCTaGCCTCTTTCTTTACTCCTA +
Preference number: 4 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLMSHCA*PLSLLL
Trigger: TAGGAGTAAAGAAAGAGGCCAGGCGCAATGGCTCAT...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 72 bp AGGAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTaGTGGAGCAAGGCAGTGAGGGCGAGGAAAGCTTTT +
Preference number: 4 (lower is better)
Translates to: RKGTAQDPGKWT*WSKAVRARKAF
Trigger: AAAAGCTTTCCTCGCCCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGAGAATGCTGAATAGGTaGAGTCTGAGTGGTGACAAC +
Preference number: 4 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLRMLNR*SLSGDN
Trigger: GTTGTCACCACTCAGACTTCACCTATTCAGCATTCT...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAACTGGAATCTCTGTCCTaGTGGTCTTCCTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKLESLS*WSSSCS
Trigger: AGAGCAGGAGGAAGACCAGCAGGACAGAGATTCCAG...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp GATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACTCGTCCTGGGGATCCGATTGTATTGGGTaGCTGTGTCAACGGCCACTC +
Preference number: 4 (lower is better)
Translates to: DESESWHRGPSSENSSWGSDCIG*LCQRPL
Trigger: GAGTGGCCGTTGACACAGGCACCCAATACAATCGGA...TCCCCAGGACGAGTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCCCTCACTGTCCTGTCTaGCTCACAGGAGCAGTTCTC +
Preference number: 4 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFPHCPV*LTGAVL
Trigger: GAGAACTGCTCCTGTGAGGCAGACAGGACAGTGAGG...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTCTCCCTCATCTCTCCTaGCCTCCTGCTTGGTGCTCA +
Preference number: 4 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSLPHLS*PPAWCS
Trigger: TGAGCACCAAGCAGGAGGCCAGGAGAGATGAGGGAG...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTGGAGCAAGGCAGTGAGTGTTTGGGGTGGTATTaGGTGATGGACAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: ERHSTRPRKVDLVEQGSECLGWY*VMDKDS
Trigger: GCTGTCCTTGTCCATCACCCAATACCACCCCAAACA...CTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCCCTGGCACTTGCAGTTaGCCAGAAGAGCTGGAATCT +
Preference number: 4 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFPGTCS*PEELES
Trigger: AGATTCCAGCTCTTCTGGTCAACTGCAAGTGCCAGG...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp GAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTGGAGCAAGGCAGTGAGTTCTTGGGAGGAAGATaGATCAGAATCCTGGCATCG +
Preference number: 4 (lower is better)
Translates to: ERHSTRPRKVDLVEQGSEFLGGR*IRILAS
Trigger: CGATGCCAGGATTCTGATTCATCTTCCTCCCAAGAA...CTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp CAGTTCTCTACAAGGCTCTTCCACACACACACACGCAAGGCTCAGGGGCTCGGTAAAGCCTCTGTCTCCTaGCAGACCCCAAACTTTAAA +
Preference number: 4 (lower is better)
Translates to: QFSTRLFHTHTRKAQGLGKASVS*QTPNFK
Trigger: TTTAAAGTTTGGGGTCTGTCAGGAGACAGAGGCTTT...ACCGAGCCCCTGAGCCTTGCGTGTGTGTGTGTGGAAGAGCCTTGTAGAGAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGTGGCCTCCTGCTTGGTaGTCATGGCCCCTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGWPPAW*SWPLLE
Trigger: CTCCAGCAGGGGCCATGAGCACCAAGCAGGAGGCCA...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp GTTGAGTTGTGTTTGGGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGTGCTGGTCTTCCTCCTaGTCTCCTGGCCATGAATCA +
Preference number: 4 (lower is better)
Translates to: VELCLGWYWVMDKDSSQQCWSSS*SPGHES
Trigger: TGATTCATGGCCAGGAGAGCAGGAGGAAGACCAGCA...CTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGAGCCGCAGCACTCCGTaGTCCAGGTCGATGCAGCAC +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGSRSTP*SRSMQH
Trigger: GTGCTGCATCGACCTGGAGCACGGAGTGCTGCGGCT...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGGCAGGCACCCCATTGTaGTTAGGTTCCTATCTGTGG +
Preference number: 4 (lower is better)
Translates to: LHPGSSLTQSTPGSRLFQAGTPL*LGSYLW
Trigger: CCACAGATAGGAACCTAAGCACAATGGGGTGCCTGC...CTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTTCCTGGCCTCCTGCTTaGTGCTCATGGCCCCTGCTG +
Preference number: 4 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSSWPPA*CSWPLL
Trigger: CAGCAGGGGCCATGAGCACCAAGCAGGAGGCCAGGA...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTCGCTGCTGGCTCAGGTaGGCTCGGTCTCGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSRCWLR*ARSRSC
Trigger: ACAGCTTCGAGACCGAGCCCACCTGAGCCAGCAGCG...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TCTTGGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACCACTGGCCAGGCTCTTaGTACAAAGGCAGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: SWEEDESESWHRGPSSENHWPGS*YKGRKG
Trigger: ACCCTTCCTGCCTTTGTACCAAGAGCCTGGCCAGTG...GTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACTCGTCCTGGGGAGATGAATCAGAATCCTaGCATCGTGGGCCCTCTAGT +
Preference number: 4 (lower is better)
Translates to: DESESWHRGPSSENSSWGDESES*HRGPSS
Trigger: ACTAGAGGGCCCACGATGCCAGGATTCTGATTCATC...TCCCCAGGACGAGTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GGGCAGGCCAGGTGTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCATGGCTTTGCTTTTCTTaGGAGGAAGATGAATCAGAA +
Preference number: 4 (lower is better)
Translates to: GQARCHRQLLASRFFSNPWLCFS*EEDESE
Trigger: TTCTGATTCATCTTCCTCCCAAGAAAAGCAAAGCCA...TGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCTGCTTTGGCAAAGCCTaGCAGGGGGTTAGAAAGCCA +
Preference number: 4 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFCFGKA*QGVRKP
Trigger: TGGCTTTCTAACCCCCTGCCAGGCTTTGCCAAAGCA...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTCCTGTCTCTGTCCCGTaGTGCAGCTCTCTTTCCAAC +
Preference number: 4 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVPVSVP*CSSLSN
Trigger: GTTGGAAAGAGAGCTGCAGCACGGGACAGAGACAGG...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGTCCACCAGGCGTCTTTaGATCACACTGCGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGSTRRL*ITLRGC
Trigger: GCAGCCGCGCAGTGTGATCCAAAGACGCCTGGTGGA...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTGCTTGCCATTGGGCCTaGGGTCTGCAGTTACAGAAG +
Preference number: 4 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVACHWA*GLQLQK
Trigger: CTTCTGTAACTGCAGACCCCAGGCCCAATGGCAAGC...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGCCGAGGGCTTGCCATTaGGCCTGGGGTCTGCAGTTA +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGPRACH*AWGLQL
Trigger: TAACTGCAGACCCCAGGCCCAATGGCAAGCCCTCGG...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 72 bp GTGAGAGACATGGTGGTGTGGGAAGTTGAGTTGTGTTaGGGGTGGTATTGGGTGATGGACAAGGACAGCAGT +
Preference number: 4 (lower is better)
Translates to: VRDMVVWEVELC*GWYWVMDKDSS
Trigger: ACTGCTGTCCTTGTCCATCACCCAATACCACCCCAAACACAACTCAACTTCCCACACCACCATGTCTCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 72 bp GCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTaGTTCAGGTTAGCTGTACCACTGTCTTTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: AQDCFSPTVPVP*FRLAVPLSFSA
Trigger: AGCAGAGAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTGGTCGATGCAGCACTTaGGAGAAAGCAGAGTCTGCA +
Preference number: 4 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVGRCST*EKAESA
Trigger: TGCAGACTCTGCTTTCTCTCAAGTGCTGCATCGACC...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTAGTGAAAACTCGTCCTaGGGAGTAGGACAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVSENSS*GVGQLL
Trigger: CAGCAGCTGTCCTACTCCCCAGGACGAGTTTTCACT...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGGAGTTGTGTTTGGGGTaGTATTGGGTGATGGACAAG +
Preference number: 4 (lower is better)
Translates to: LHPGSSLTQSTPGSRLFQELCLG*YWVMDK
Trigger: CTTGTCCATCACCCAATACCACCCCAAACACAACTC...CTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAAAGAGACATGGTGGTGTaGGAAGTTGAGTTGTGTTTG +
Preference number: 4 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKRDMVV*EVELCL
Trigger: CAAACACAACTCAACTTCCCACACCACCATGTCTCT...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp GTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCGGTACAAAAAGCCAGTaGAAACGGATAAATACCTAT +
Preference number: 4 (lower is better)
Translates to: VTGSSLHPGSSLTQSTPGGTKSQ*KRINTY
Trigger: ATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACC...GCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TCTTGGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACTCTGTCTTTTTGCTTTaGCAAAGCCTGGCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: SWEEDESESWHRGPSSENSVFLL*QSLAGG
Trigger: ACCCCCTGCCAGGCTTTGCCAAAGCAAAAAGACAGA...GTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTCTCCTTCACCCAGGCTaGAGTCCGATGGCACGAACT +
Preference number: 4 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSLLHPG*SPMART
Trigger: AGTTCGTGCCATCGGACTCCAGCCTGGGTGAAGGAG...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGTTTCCCTCTGGGGACTaGCTGAGACAGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGFPSGD*LRQQSL
Trigger: CAGTGACTGCTGTCTCAGTCAGTCCCCAGAGGGAAA...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGTCCCCCACTCAACTGTaGGCAGATGTGCACAGACTC +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGSPTQL*ADVHRL
Trigger: GAGTCTGTGCACATCTGCTCACAGTTGAGTGGGGGA...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TTGCATCCCGGTTCTTCTCTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGAAGCTTTTAGGATTTTaGGACCAGGTGCTATGGCAC +
Preference number: 4 (lower is better)
Translates to: LHPGSSLTQSTPGSRLFQKLLGF*DQVLWH
Trigger: GTGCCATAGCACCTGGTCTCAAAATCCTAAAAGCTT...CTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAGAGAAGAACCGGGATGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTGTCTCTGTCCCGTGCTaGAGCTCTCTTTCCAACAGG +
Preference number: 4 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSVSVPC*SSLSNR
Trigger: CCTGTTGGAAAGAGAGCTGCAGCACGGGACAGAGAC...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTGCCACTCTAAGCAGCTaGTCCTGGCACTTGCAGTTG +
Preference number: 4 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSATLSS*SWHLQL
Trigger: CAACTGCAAGTGCCAGGACCAGCTGCTTAGAGTGGC...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp CACCCCATTGTGCTTAGGTTCCTATCTGTGGTCTTGATTTGGCTTTGCTTTTCTGTGAAGTCTGAGTGGTaGCAACCTCACTGTCCTGTC +
Preference number: 4 (lower is better)
Translates to: HPIVLRFLSVVLIWLCFSVKSEW*QPHCPV
Trigger: GACAGGACAGTGAGGTTGTCACCACTCAGACTTCAC...AGAAAAGCAAAGCCAAATCAAGACCACAGATAGGAACCTAAGCACAATGGGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCTCCTATCTGTGGTCTTaGTTTGGCTTTGCTTTTCTT +
Preference number: 4 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFSYLWS*FGFAFL
Trigger: AAGAAAAGCAAAGCCAAATCAAGACCACAGATAGGA...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTGATTTTGAGACCAGGTaGTATGGCACAAGTGATAAG +
Preference number: 4 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSDFETR*YGTSDK
Trigger: CTTATCACTTGTGCCATAGCACCTGGTCTCAAAATC...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTGTCTTGATTTGGCTTTaGTTTTCTTGGGAGGAAGAT +
Preference number: 4 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSVLIWL*FSWEED
Trigger: ATCTTCCTCCCAAGAAAAGCAAAGCCAAATCAAGAC...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR GCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGAAGCCTCTGTCTTTTTaGTTTGGCAAAGCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGKPLSF*FGKAWQ
Trigger: CTGCCAGGCTTTGCCAAAGCAAAAAGACAGAGGCTT...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTGAAGGCCTAATGAGGTaGATAGTTCTAGAAATCAGA +
Preference number: 4 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSEGLMR*IVLEIR
Trigger: TCTGATTTCTAGAACTATCCACCTCATTAGGCCTTC...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR TCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGCGCTCTTTGTTGTATTaGATTCTGGCTGTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGRSLLY*ILAVSS
Trigger: GGAAGAAACAGCCAGAATTCAATACAACAAAGAGCG...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CCA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGGGTAATCAAACTAACTaGCTTCAGACATTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGGNQTN*LQTFAA
Trigger: GGCTGCAAATGTCTGAAGCCAGTTAGTTTGATTACC...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000337508.9
3UTR CAA 72 bp ACCTATAGCGTTAATAGCAGAAGTATGTCCAAGGTTTaGCACAGGGTAATCAAACTAACTGGCTTCAGACAT +
Preference number: 4 (lower is better)
Translates to: TYSVNSRSMSKV*HRVIKLTGFRH
Trigger: ATGTCTGAAGCCAGTTAGTTTGATTACCCTGTGCAAAACCTTGGACATACTTCTGCTATTAACGCTATAGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS GCA 90 bp GGGGCTGCTCGGTGGGGGCGTCACCGAGTCCTCTCTGCTTCTTCCTaGCTGTCTCTGTCCCGTGCTGCAGCTCTCTTTCCAACAGGAGGG +
Preference number: 5 (lower is better)
Translates to: GAARWGRHRVLSASS*LSLSRAAALFPTGG
Trigger: CCCTCCTGTTGGAAAGAGAGCTGCAGCACGGGACAGAGACAGGCAGGAAGAAGCAGAGAGGACTCGGTGACGCCCCCACCGAGCAGCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337508.9
ENST00000542386.1
CDS-3UTR CAA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGCTCCACCAGGCGTCTTaGGATCACACTGCGCGGCTG +
Preference number: 5 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLLHQAS*DHTARL
Trigger: CAGCCGCGCAGTGTGATCCAAAGACGCCTGGTGGAG...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp AGAGTTTATTCCAATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTGGCTCCTGGCCTCCTGCTaGGTGCTCATGGCCCCTGCT +
Preference number: 5 (lower is better)
Translates to: RVYSNGEAAEPRACHWAWLLASC*VLMAPA
Trigger: AGCAGGGGCCATGAGCACCAAGCAGGAGGCCAGGAG...CCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCATTGGAATAAACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp GGGCAGGCCAGGTGTCACAGGCAGCTCCTTGCATCCCGGTTCTTCTCTAACCCACCAGGAAAGTGGACCTaGTGGAGCAAGGCAGTGAGG +
Preference number: 5 (lower is better)
Translates to: GQARCHRQLLASRFFSNPPGKWT*WSKAVR
Trigger: CCTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGG...TGGGTTAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGACACCTGGCCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAACGCGGCTGCAAGTCCTaGGAGGTGCCGAGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKRGCKS*EVPSLL
Trigger: CAAGAGGCTCGGCACCTCCAAGGACTTGCAGCCGCG...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGGTCCAGGGACATAGGTaGGTGAGGCATGGCGGTCTA +
Preference number: 5 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLVQGHR*VRHGGL
Trigger: TAGACCGCCATGCCTCACCAACCTATGTCCCTGGAC...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS CCA 90 bp TCTAACCCCAGGCGGCTGAGACATCCAGCAGAGATCCGATTGTATTaGGTGCCTGTGTCAACGGCCACTCTAAGCAGCTGGTCCTGGCAC +
Preference number: 5 (lower is better)
Translates to: SNPRRLRHPAEIRLY*VPVSTATLSSWSWH
Trigger: GTGCCAGGACCAGCTGCTTAGAGTGGCCGTTGACACAGGCACCCAATACAATCGGATCTCTGCTGGATGTCTCAGCCGCCTGGGGTTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337508.9
ENST00000542990.5
CDS CCA 90 bp CCCGTTCCCCACACGCCTCTTCTTCTAAGGCAAGGTCTTTCCCTCTaGGGACTGACTGAGACAGCAGTCACTGGCCAGGCTCTTGGTACA +
Preference number: 5 (lower is better)
Translates to: PVPHTPLLLRQGLSL*GLTETAVTGQALGT
Trigger: TGTACCAAGAGCCTGGCCAGTGACTGCTGTCTCAGTCAGTCCCCAGAGGGAAAGACCTTGCCTTAGAAGAAGAGGCGTGTGGGGAACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp TTCAGCCCAACGGTCCCAGTTCCCTTGTTCAGGTTAGCTGTACCACTGTCTTTCAGGTCGGCCGAGTCCTaGTGCAGGAACTGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: FSPTVPVPLFRLAVPLSFRSAES*CRNWVA
Trigger: GGCCACCCAGTTCCTGCACAAGGACTCGGCCGACCT...GAAAGACAGTGGTACAGCTAACCTGAACAAGGGAACTGGGACCGTTGGGCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp AAGCTCAAGAGGCCAGAGATGGGGATAGGAAGAAGGCCTAATGAGGTGGATAGTGAGGTGCCGAGCCTCTaGAGGCTGTCCAGCGGGAGC +
Preference number: 5 (lower is better)
Translates to: KLKRPEMGIGRRPNEVDSEVPSL*RLSSGS
Trigger: GCTCCCGCTGGACAGCCTCAAGAGGCTCGGCACCTC...ACTATCCACCTCATTAGGCCTTCTTCCTATCCCCATCTCTGGCCTCTTGAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp AGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAATACCTATAGCGTTACTGCTCCACCTGGGTaGGGGGCCCAGGGGCCAGGT +
Preference number: 5 (lower is better)
Translates to: RGSVGTKSQWKRINTYSVTAPPG*GAQGPG
Trigger: ACCTGGCCCCTGGGCCCCCAACCCAGGTGGAGCAGT...AACGCTATAGGTATTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp GGGTGGTATTGGGTGATGGACAAGGACAGCAGTCAGCAGAGCCTTCGACCCAGCGTCACAGGCAGCTCCTaGCATCCCGGTTCTTCTCTA +
Preference number: 5 (lower is better)
Translates to: GWYWVMDKDSSQQSLRPSVTGSS*HPGSSL
Trigger: TAGAGAAGAACCGGGATGCAAGGAGCTGCCTGTGAC...GCTGGGTCGAAGGCTCTGCTGACTGCTGTCCTTGTCCATCACCCAATACCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCCAGCAGAGATCCGATaGTATTGGGTGCCTGTGTCA +
Preference number: 5 (lower is better)
Translates to: LTQSTPGSRLFQPNGPSSPAEIR*YWVPVS
Trigger: TGACACAGGCACCCAATACAATCGGATCTCTGCTGG...GGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CTAACCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCGTGTTTGGGGTGGTATaGGGTGATGGACAAGGACAG +
Preference number: 5 (lower is better)
Translates to: LTQSTPGSRLFQPNGPSSVFGVV*GDGQGQ
Trigger: CTGTCCTTGTCCATCACCCAATACCACCCCAAACAC...GGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGGTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp AAGAGCCCCCGTTCCCCACACGCCTCTTCTTCTAAGGCAAGGTCTTTCCCTCTGACGGTCCCAGTTCCCTaGTTCAGGTTAGCTGTACCA +
Preference number: 5 (lower is better)
Translates to: KSPRSPHASSSKARSFPLTVPVP*FRLAVP
Trigger: TGGTACAGCTAACCTGAACAAGGGAACTGGGACCGT...CAGAGGGAAAGACCTTGCCTTAGAAGAAGAGGCGTGTGGGGAACGGGGGCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp GAAAGGCACAGCACAAGACCCAGGAAAGTGGACCTTGTGGAGCAAGGCAGTGAGTCCTGGCACTTGCAGTaGACCAGAAGAGCTGGAATC +
Preference number: 5 (lower is better)
Translates to: ERHSTRPRKVDLVEQGSESWHLQ*TRRAGI
Trigger: GATTCCAGCTCTTCTGGTCAACTGCAAGTGCCAGGA...CTCACTGCCTTGCTCCACAAGGTCCACTTTCCTGGGTCTTGTGCTGTGCCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAAAGCTGGTCCTGGCACTaGCAGTTGACCAGAAGAGCT +
Preference number: 5 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKSWSWH*QLTRRA
Trigger: AGCTCTTCTGGTCAACTGCAAGTGCCAGGACCAGCT...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGGAAGTTGAGTTGTGTTaGGGGTGGTATTGGGTGATG +
Preference number: 5 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLEVELC*GWYWVM
Trigger: CATCACCCAATACCACCCCAAACACAACTCAACTTC...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGAACTGGGTGGCCTGTTaGAGCCGGCGCTGCTGGCTC +
Preference number: 5 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGNWVAC*SRRCWL
Trigger: GAGCCAGCAGCGCCGGCTCAAACAGGCCACCCAGTT...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CAGTTCTCTACAAGGCTCTTCCACACACACACACGCAAGGCTCAGGGGCTCGGTGGTCTTGATTTGGCTTaGCTTTTCTTGGGAGGAAGA +
Preference number: 5 (lower is better)
Translates to: QFSTRLFHTHTRKAQGLGGLDLA*LFLGGR
Trigger: TCTTCCTCCCAAGAAAAGCAAAGCCAAATCAAGACC...ACCGAGCCCCTGAGCCTTGCGTGTGTGTGTGTGGAAGAGCCTTGTAGAGAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp AGAGTTTATTCCAATGGAGAAGCAGCTGAGCCGAGGGCTTGCCATTGGGCCTGGAAAGCCTCTGTCTTTTaGCTTTGGCAAAGCCTGGCA +
Preference number: 5 (lower is better)
Translates to: RVYSNGEAAEPRACHWAWKASVF*LWQSLA
Trigger: TGCCAGGCTTTGCCAAAGCAAAAAGACAGAGGCTTT...CCAGGCCCAATGGCAAGCCCTCGGCTCAGCTGCTTCTCCATTGGAATAAACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CCCAGTCAACCCCAGGCTCAAGACTGTTTCAGCCCAACGGTCCCAGTTCCCTTGAAAGCTTTTAGGATTTaGAGACCAGGTGCTATGGCA +
Preference number: 5 (lower is better)
Translates to: PSQPQAQDCFSPTVPVPLKAFRI*RPGAMA
Trigger: TGCCATAGCACCTGGTCTCAAAATCCTAAAAGCTTT...CAAGGGAACTGGGACCGTTGGGCTGAAACAGTCTTGAGCCTGGGGTTGACTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp TCTTGGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACAGGTCGATGCAGCACTaGAGAGAAAGCAGAGTCTGC +
Preference number: 5 (lower is better)
Translates to: SWEEDESESWHRGPSSENRSMQH*RESRVC
Trigger: GCAGACTCTGCTTTCTCTCAAGTGCTGCATCGACCT...GTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp TCTTGGGAGGAAGATGAATCAGAATCCTGGCATCGTGGGCCCTCTAGTGAAAACCAAGCAGGCACCCCATaGTGCTTAGGTTCCTATCTG +
Preference number: 5 (lower is better)
Translates to: SWEEDESESWHRGPSSENQAGTP*CLGSYL
Trigger: CAGATAGGAACCTAAGCACAATGGGGTGCCTGCTTG...GTTTTCACTAGAGGGCCCACGATGCCAGGATTCTGATTCATCTTCCTCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp CAGTTCTCTACAAGGCTCTTCCACACACACACACGCAAGGCTCAGGGGCTCGGTCCGCTCTTTGTTGTATaGAATTCTGGCTGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: QFSTRLFHTHTRKAQGLGPLFVV*NSGCFF
Trigger: GAAGAAACAGCCAGAATTCAATACAACAAAGAGCGG...ACCGAGCCCCTGAGCCTTGCGTGTGTGTGTGTGGAAGAGCCTTGTAGAGAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp ACACGCAAGGCTCAGGGGCTCGGTGGGTACAAAAAGCCAGTGGAAACGGATAAAATCTGTGGTCTTGATTaGGCTTTGCTTTTCTTGGGA +
Preference number: 5 (lower is better)
Translates to: TRKAQGLGGYKKPVETDKICGLD*ALLFLG
Trigger: TCCCAAGAAAAGCAAAGCCAAATCAAGACCACAGAT...TTTATCCGTTTCCACTGGCTTTTTGTACCCACCGAGCCCCTGAGCCTTGCGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS-3UTR CAA 90 bp TTACTCCTAATCCATGATTTGAGAGACTCAAACCAGCCAGAAAGACTCTCAGGGAGTATGTCCAAGGTTTaGCACAGGGTAATCAAACTA +
Preference number: 5 (lower is better)
Translates to: LLLIHDLRDSNQPERLSGSMSKV*HRVIKL
Trigger: TAGTTTGATTACCCTGTGCAAAACCTTGGACATACT...CCCTGAGAGTCTTTCTGGCTGGTTTGAGTCTCTCAAATCATGGATTAGGAGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS CAA 90 bp AGGCTCCCCCTGAAGCCAATTCGGGTTTCCCTCCACCAGGCGTCTTaGGATCACACTGCGCGGCTGCAAGTCCTTGGAGGTGCCGAGCCT +
Preference number: 6 (lower is better)
Translates to: RLPLKPIRVSLHQAS*DHTARLQVLGGAEP
Trigger: AGGCTCGGCACCTCCAAGGACTTGCAGCCGCGCAGTGTGATCCAAAGACGCCTGGTGGAGGGAAACCCGAATTGGCTTCAGGGGGAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000337508.9
ENST00000542386.1
ENST00000542990.5
CDS GCA 72 bp AGCTCTGAGAACGGGGCTTTCAGCCGCAGCACTCCGTaGTCCAGGTCGATGCAGCACTTGAGAGAAAGCAGA +
Preference number: 6 (lower is better)
Translates to: SSENGAFSRSTP*SRSMQHLRESR
Trigger: TCTGCTTTCTCTCAAGTGCTGCATCGACCTGGAGCACGGAGTGCTGCGGCTGAAAGCCCCGTTCTCAGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337508.9
CDS CAA 72 bp CTGAAGCCAATTCGGGTTTCCCTCCACCAGGCGTCTTaGGATCACACTGCGCGGCTGCAAGTCCTTGGAGGT +
Preference number: 6 (lower is better)
Translates to: LKPIRVSLHQAS*DHTARLQVLGG
Trigger: ACCTCCAAGGACTTGCAGCCGCGCAGTGTGATCCAAAGACGCCTGGTGGAGGGAAACCCGAATTGGCTTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337508.9
ENST00000542386.1
ENST00000542990.5
CDS CCA 72 bp CAGCTGGTCCTGGCACTTGCAGTTGACCAGAAGAGCTaGAATCTCTGTCCTGCTGGTCTTCCTCCTGCTCTC +
Preference number: 6 (lower is better)
Translates to: QLVLALAVDQKS*NLCPAGLPPAL
Trigger: GAGAGCAGGAGGAAGACCAGCAGGACAGAGATTCCAGCTCTTCTGGTCAACTGCAAGTGCCAGGACCAGCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337508.9
ENST00000542386.1
ENST00000542990.5
CDS CCA 72 bp AGGCGGCTGAGACATCCAGCAGAGATCCGATTGTATTaGGTGCCTGTGTCAACGGCCACTCTAAGCAGCTGG +
Preference number: 6 (lower is better)
Translates to: RRLRHPAEIRLY*VPVSTATLSSW
Trigger: CCAGCTGCTTAGAGTGGCCGTTGACACAGGCACCCAATACAATCGGATCTCTGCTGGATGTCTCAGCCGCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337508.9
ENST00000542990.5
CDS CAA 72 bp AACCCCAGGCGGCTGAGACATCCAGCAGAGATCCGATaGTATTGGGTGCCTGTGTCAACGGCCACTCTAAGC +
Preference number: 6 (lower is better)
Translates to: NPRRLRHPAEIR*YWVPVSTATLS
Trigger: GCTTAGAGTGGCCGTTGACACAGGCACCCAATACAATCGGATCTCTGCTGGATGTCTCAGCCGCCTGGGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337508.9
ENST00000542990.5
CDS CAA 90 bp CTTTTCTCTAACCCCAGGCGGCTGAGACATCCAGCAGAGATCCGATaGTATTGGGTGCCTGTGTCAACGGCCACTCTAAGCAGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: LFSNPRRLRHPAEIR*YWVPVSTATLSSWS
Trigger: GGACCAGCTGCTTAGAGTGGCCGTTGACACAGGCACCCAATACAATCGGATCTCTGCTGGATGTCTCAGCCGCCTGGGGTTAGAGAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000337508.9
ENST00000542990.5