Pregenerated sensors for NRG1-IT3 (Homo sapiens)
Ensembl gene IDs: ENSG00000254049Ensembl transcript IDs: ENST00000519023.1, ENST00000657615.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTCAGTCTGTGCTTCCAGCAGCTTGGATGGTTGCTACCACGGAGATaGTACAAACAGCAAGCAGGCAGGATGAATGCCAGGACGTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: LSLCFQQLGWLLPRR*YKQQAGRMNARTFA Trigger: TGCAAACGTCCTGGCATTCATCCTGCCTGCTTGCTGTTTGTACCATCTCCGTGGTAGCAACCATCCAAGCTGCTGGAAGCACAGACTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519023.1 ENST00000657615.1 |
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| CDS TCA 90 bp | TGCAAGCCTTTCCTTCCAGGGACTTCCATTGTTCTGCGCCCTGAGTaGAGTGTTTCACTTTTTCCCATGTTGCCTAGGCTGCAAACTGTC | + |
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Preference number: 5 (lower is better) Translates to: CKPFLPGTSIVLRPE*SVSLFPMLPRLQTV Trigger: GACAGTTTGCAGCCTAGGCAACATGGGAAAAAGTGAAACACTTCACTCAGGGCGCAGAACAATGGAAGTCCCTGGAAGGAAAGGCTTGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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| CDS GCA 90 bp | TGGTTTTCTCTTGCAAGCCTTTCCTTCCAGGGACTTCCATTGTTCTaGGCCCTGAGTGAAGTGTTTCACTTTTTCCCATGTTGCCTAGGC | + |
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Preference number: 5 (lower is better) Translates to: WFSLASLSFQGLPLF*ALSEVFHFFPCCLG Trigger: GCCTAGGCAACATGGGAAAAAGTGAAACACTTCACTCAGGGCGCAGAACAATGGAAGTCCCTGGAAGGAAAGGCTTGCAAGAGAAAACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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| CDS GCA 90 bp | AACAACTGGACTTTCGAATATCTCAGAAGCCACTTGGTTTTCTCTTaGAAGCCTTTCCTTCCAGGGACTTCCATTGTTCTGCGCCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: NNWTFEYLRSHLVFS*KPFLPGTSIVLRPE Trigger: CTCAGGGCGCAGAACAATGGAAGTCCCTGGAAGGAAAGGCTTGCAAGAGAAAACCAAGTGGCTTCTGAGATATTCGAAAGTCCAGTTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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| CDS TCA 90 bp | GATGGTTGCTACCACGGAGATGGTACAAACAGCAAGCAGGCAGGATaGATGCCAGGACGTTTGCATCTGGTTGTTCATAGAAACATAACA | + |
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Preference number: 5 (lower is better) Translates to: DGCYHGDGTNSKQAG*MPGRLHLVVHRNIT Trigger: TGTTATGTTTCTATGAACAACCAGATGCAAACGTCCTGGCATTCATCCTGCCTGCTTGCTGTTTGTACCATCTCCGTGGTAGCAACCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519023.1 ENST00000657615.1 |
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| CDS CCA 72 bp | TGCTTCCAGCAGCTTGGATGGTTGCTACCACGGAGATaGTACAAACAGCAAGCAGGCAGGATGAATGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: CFQQLGWLLPRR*YKQQAGRMNAR Trigger: CCTGGCATTCATCCTGCCTGCTTGCTGTTTGTACCATCTCCGTGGTAGCAACCATCCAAGCTGCTGGAAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519023.1 ENST00000657615.1 |
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| CDS CAA 72 bp | ATAGAGCTCAGTCTGTGCTTCCAGCAGCTTGGATGGTaGCTACCACGGAGATGGTACAAACAGCAAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: IELSLCFQQLGW*LPRRWYKQQAG Trigger: GCCTGCTTGCTGTTTGTACCATCTCCGTGGTAGCAACCATCCAAGCTGCTGGAAGCACAGACTGAGCTCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519023.1 ENST00000657615.1 |
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| CDS CCA 72 bp | CTCATAGAGCTCAGTCTGTGCTTCCAGCAGCTTGGATaGTTGCTACCACGGAGATGGTACAAACAGCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: LIELSLCFQQLG*LLPRRWYKQQA Trigger: TGCTTGCTGTTTGTACCATCTCCGTGGTAGCAACCATCCAAGCTGCTGGAAGCACAGACTGAGCTCTATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519023.1 ENST00000657615.1 |
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| CDS TCA 72 bp | TTCCTTCCAGGGACTTCCATTGTTCTGCGCCCTGAGTaGAGTGTTTCACTTTTTCCCATGTTGCCTAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: FLPGTSIVLRPE*SVSLFPMLPRL Trigger: CAGCCTAGGCAACATGGGAAAAAGTGAAACACTTCACTCAGGGCGCAGAACAATGGAAGTCCCTGGAAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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| CDS CCA 72 bp | TTGACTCATAGAGCTCAGTCTGTGCTTCCAGCAGCTTaGATGGTTGCTACCACGGAGATGGTACAAACAGCA | + |
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Preference number: 6 (lower is better) Translates to: LTHRAQSVLPAA*MVATTEMVQTA Trigger: TGCTGTTTGTACCATCTCCGTGGTAGCAACCATCCAAGCTGCTGGAAGCACAGACTGAGCTCTATGAGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519023.1 ENST00000657615.1 |
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| CDS GCA 72 bp | GCTTGGTTTTCATCTCAATCCTGTTTTGCCTCATCTTaGGGTTACCTTAGGAGCACTTCAGGGCCAACCATT | + |
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Preference number: 6 (lower is better) Translates to: AWFSSQSCFASS*GYLRSTSGPTI Trigger: AATGGTTGGCCCTGAAGTGCTCCTAAGGTAACCGCAAGATGAGGCAAAACAGGATTGAGATGAAAACCAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657615.1 |
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| CDS CAA 72 bp | TTTTCTCTTGCAAGCCTTTCCTTCCAGGGACTTCCATaGTTCTGCGCCCTGAGTGAAGTGTTTCACTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: FSLASLSFQGLP*FCALSEVFHFF Trigger: GAAAAAGTGAAACACTTCACTCAGGGCGCAGAACAATGGAAGTCCCTGGAAGGAAAGGCTTGCAAGAGAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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| CDS CAA 72 bp | GAAAACAACTGGACTTTCGAATATCTCAGAAGCCACTaGGTTTTCTCTTGCAAGCCTTTCCTTCCAGGGACT | + |
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Preference number: 6 (lower is better) Translates to: ENNWTFEYLRSH*VFSCKPFLPGT Trigger: AGTCCCTGGAAGGAAAGGCTTGCAAGAGAAAACCAAGTGGCTTCTGAGATATTCGAAAGTCCAGTTGTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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| CDS TCA 72 bp | ATATGCTATATAGAGTACACTATTTGTGGTACATGGTaGACTAAGACTTTTGGCCCAATCACAGGCTTTATG | + |
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Preference number: 6 (lower is better) Translates to: ICYIEYTICGTW*TKTFGPITGFM Trigger: CATAAAGCCTGTGATTGGGCCAAAAGTCTTAGTTCACCATGTACCACAAATAGTGTACTCTATATAGCATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519023.1 |
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