RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NR2C1 (Homo sapiens)

Ensembl gene IDs: ENSG00000120798

Ensembl transcript IDs: ENST00000330677.7, ENST00000333003.10, ENST00000393101.7, ENST00000545833.5, ENST00000546367.5, ENST00000546416.5, ENST00000547469.1, ENST00000547594.5, ENST00000548252.1, ENST00000548966.5, ENST00000549482.1, ENST00000551386.1, ENST00000551647.5, ENST00000552417.5, ENST00000552484.1, ENST00000552791.1, ENST00000552861.5, ENST00000622476.4

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp ACATTCATCACTTGCCAGCACTGGGCAAGACCAAGAGTAAAAAGTTCATTCCAGATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGT +
Preference number: 2 (lower is better)
Translates to: TFITCQHWARPRVKSSFQIESAQ*IDKNSS
Trigger: ACTGCTGTTCTTATCAATGCACTGGGCACTTTCGAT...CTGGAATGAACTTTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGATGAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000552791.1
3UTR-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTCTTGCCCTAGAGCCTaGAAAGAAGGAATCGAAAGT +
Preference number: 2 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHSCPRA*KEGIES
Trigger: ACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
3UTR-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAGTAAGATGGGAATGTaGTGCTGCCTTCTAGTAGAT +
Preference number: 2 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHSKMGM*CCLLVD
Trigger: ATCTACTAGAAGGCAGCATCACATTCCCATCTTACT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
3UTR-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGATATGCTGTTTTCTTaGCCTAGAGCCTGGAAAGAA +
Preference number: 2 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHDMLFS*PRAWKE
Trigger: TTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000552791.1
3UTR-3UTR GCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACTTAATTTCTGCTGCCTaGCCAGTCACTTCAAAAATT +
Preference number: 2 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHLISAA*PVTSKI
Trigger: AATTTTTGAAGTGACTGGGCAGGCAGCAGAAATTAA...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
3UTR-3UTR CCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACTGGTGTCTTGTGTTCTaGCAAAGAACAGTTAAGTTT +
Preference number: 2 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHWCLVF*QRTVKF
Trigger: AAACTTAACTGTTCTTTGCCAGAACACAAGACACCA...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
3UTR-3UTR GCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATCATTTAATTTCTGCTaGCTGCCCAGTCACTTCAAA +
Preference number: 2 (lower is better)
Translates to: KESGRKIHLISAACPVTSSFNFC*LPSHFK
Trigger: TTTGAAGTGACTGGGCAGGCAGCAGAAATTAAATGA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
3UTR-3UTR TCA 90 bp AGAGTTATAATCTGCAGGCTCCATTTTCAAAATATGTGGGATAACACTGTCAATATGCCTCAAAAGCAGTaGGTTCAATTTGGTGTCTTG +
Preference number: 2 (lower is better)
Translates to: RVIICRLHFQNMWDNTVNMPQKQ*VQFGVL
Trigger: CAAGACACCAAATTGAACTCACTGCTTTTGAGGCAT...ATTGACAGTGTTATCCCACATATTTTGAAAATGGAGCCTGCAGATTATAACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000551647.5
3UTR GCA 72 bp CCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGTCTGGAGGCAGACTCC +
Preference number: 3 (lower is better)
Translates to: PRAWKEGIESAQ*IDKNSSLEADS
Trigger: GGAGTCTGCCTCCAGACTGCTGTTCTTATCAATGCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552791.1
3UTR-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAAAGTGCCCAGTGCATaGATAAGAACAGCAGTCTGG +
Preference number: 3 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHKVPSA*IRTAVW
Trigger: CCAGACTGCTGTTCTTATCAATGCACTGGGCACTTT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
3UTR-3UTR CAA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGCTGTCAATTCGTATATaGCCAATGAGACCTTTGAAA +
Preference number: 3 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQLSIRI*PMRPLK
Trigger: TTTCAAAGGTCTCATTGGCAATATACGAATTGACAG...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551647.5
3UTR-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACGCTGTGACCAATTATTaGAGAGTTATAATCTGCAGG +
Preference number: 3 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHAVTNY*RVIICR
Trigger: CCTGCAGATTATAACTCTCAAATAATTGGTCACAGC...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551647.5
3UTR-3UTR CAA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAGTTCAATTTGGTGTCTaGTGTTCTGGCAAAGAACAG +
Preference number: 3 (lower is better)
Translates to: KESGRKIHLISAACPVTSVQFGV*CSGKEQ
Trigger: CTGTTCTTTGCCAGAACACAAGACACCAAATTGAAC...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
3UTR CCA 72 bp TCAAAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTaGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCA +
Preference number: 3 (lower is better)
Translates to: SKAVSSIWCLVF*QRTVKFTALQS
Trigger: TGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
3UTR-3UTR CAA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATGTTCAATTTGGTGTCTaGTGTTCTGGCAAAGAACAG +
Preference number: 3 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNVQFGV*CSGKEQ
Trigger: CTGTTCTTTGCCAGAACACAAGACACCAAATTGAAC...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
3UTR-3UTR CAA 90 bp GTTTTCAAATGCTGTGACCAATTATTTGAGAGTTATAATCTGCAGGCTCCATTTAGCAGTGAGTTCAATTaGGTGTCTTGTGTTCTGGCA +
Preference number: 3 (lower is better)
Translates to: VFKCCDQLFESYNLQAPFSSEFN*VSCVLA
Trigger: TGCCAGAACACAAGACACCAAATTGAACTCACTGCT...AAATGGAGCCTGCAGATTATAACTCTCAAATAATTGGTCACAGCATTTGAAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGCTTTTGCGCCCTGCTaGCTCCGGCGTCGGGCGCCG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRAFAPC*LRRRAP
Trigger: CGGCGCCCGACGCCGGAGTCAGCAGGGCGCAAAAGC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATGCTTTTGCGCCCTGCTaGCTCCGGCGTCGGGCGCCG +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNAFAPC*LRRRAP
Trigger: CGGCGCCCGACGCCGGAGTCAGCAGGGCGCAAAAGC...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGATCTACCGGCGCTTTTaGGCCCTGCTGACTCCGGCG +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQIYRRF*ALLTPA
Trigger: CGCCGGAGTCAGCAGGGCGCAAAAGCGCCGGTAGAT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCTGCCACTCGTGGATTaGGGGGCGCTCCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHLPLVD*GALREE
Trigger: CTCTTCCCGGAGCGCCCCCCAATCCACGAGTGGCAG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATATCTACCGGCGCTTTTaGGCCCTGCTGACTCCGGCG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHIYRRF*ALLTPA
Trigger: CGCCGGAGTCAGCAGGGCGCAAAAGCGCCGGTAGAT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCCCGCTACTGAGCTCTaGCAGGCTGTGCTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHPATEL*QAVLSP
Trigger: TGGAGAGAGCACAGCCTGCCAGAGCTCAGTAGCGGG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCCCGCTACTGAGCTCTaGCAGGCTGTGCTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHPATEL*QAVLSP
Trigger: TGGAGAGAGCACAGCCTGCCAGAGCTCAGTAGCGGG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGTCCGGGAAGAGAGGTTaGAGAAAGCCGACGGGATGT +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQSGKRG*RKPTGC
Trigger: ACATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGA...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTGCCACTCGTGGATTaGGGGGCGCTCCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLPLVD*GALREE
Trigger: CTCTTCCCGGAGCGCCCCCCAATCCACGAGTGGCAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTCCGGGAAGAGAGGTTaGAGAAAGCCGACGGGATGT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHSGKRG*RKPTGC
Trigger: ACATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATTCCATGCCCGCTACTaGGCTCTGGCAGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSFHARY*ALAGCA
Trigger: AGCACAGCCTGCCAGAGCTCAGTAGCGGGCATGGAA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTGGGGGTCAGAGTTCGTaGCCTCTTTCTCGGCTCGGC +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFGGQSS*PLSRLG
Trigger: GCCGAGCCGAGAAAGAGGTCACGAACTCTGACCCCC...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGATCTACCGGCGCTTTTaGGCCCTGCTGACTCCGGCG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRIYRRF*ALLTPA
Trigger: CGCCGGAGTCAGCAGGGCGCAAAAGCGCCGGTAGAT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGAGCTCTGGCAGGCTGTaGTCTCTCCAGGATTCAATG +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQSSGRL*SLQDSM
Trigger: CATTGAATCCTGGAGAGAGCACAGCCTGCCAGAGCT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGTACACTTCCTTCCATaGCCGCTACTGAGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHVHFLP*PLLSSG
Trigger: GCCAGAGCTCAGTAGCGGGCATGGAAGGAAGTGTAC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp TGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTGCATCTTGCCCTAGAGCCTaGAAAGAAGGAATCGAAAGT +
Preference number: 4 (lower is better)
Translates to: CCFLALEPGKKESKVPSASCPRA*KEGIES
Trigger: ACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGA...TGCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CCA 90 bp TGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTGCAATCACTTGCCAGCACTaGGCAAGACCAAGAGTAAAA +
Preference number: 4 (lower is better)
Translates to: CCFLALEPGKKESKVPSAITCQH*ARPRVK
Trigger: TTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGAT...TGCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTTCTATGGTTGCCATaGTCTACCGGCGCTTTTGCG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLLWLP*STGAFA
Trigger: CGCAAAAGCGCCGGTAGATCATGGCAACCATAGAAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTTCCATGCCCGCTACTaGGCTCTGGCAGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRFHARY*ALAGCA
Trigger: AGCACAGCCTGCCAGAGCTCAGTAGCGGGCATGGAA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCCTGAAAGCTACATGTaGATCGCTGAGAAGTGGCCC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHPESYM*IAEKWP
Trigger: GGGCCACTTCTCAGCGATTCACATGTAGCTTTCAGG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCCTGAAAGCTACATGTaGATCGCTGAGAAGTGGCCC +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHPESYM*IAEKWP
Trigger: GGGCCACTTCTCAGCGATTCACATGTAGCTTTCAGG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp TGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTGCAAGTAAGATGGGAATGTaGTGCTGCCTTCTAGTAGAT +
Preference number: 4 (lower is better)
Translates to: CCFLALEPGKKESKVPSASKMGM*CCLLVD
Trigger: ATCTACTAGAAGGCAGCATCACATTCCCATCTTACT...TGCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR TCA 90 bp TGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTGCAGATGACATTTTAAGGTaGTTACCCCTCTGCTTGTTG +
Preference number: 4 (lower is better)
Translates to: CCFLALEPGKKESKVPSADDILR*LPLCLL
Trigger: CAACAAGCAGAGGGGTAATCACCTTAAAATGTCATC...TGCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCCCGGAGTGGAATCTTaGCTGGCCAGAATGACTTTG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHPGVES*LARMTL
Trigger: CAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAGCTCTGGCAGGCTGTaGTCTCTCCAGGATTCAATG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHSSGRL*SLQDSM
Trigger: CATTGAATCCTGGAGAGAGCACAGCCTGCCAGAGCT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp ATGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTGCCTTTCACCAGTGATATaGTGTTTTCTTGCCCTAGAG +
Preference number: 4 (lower is better)
Translates to: MLFSCPRAWKEGIESAQCLSPVI*CFLALE
Trigger: CTCTAGGGCAAGAAAACAGCATATCACTGGTGAAAG...GCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCCCGCTACTGAGCTCTaGCAGGCTGTGCTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRPATEL*QAVLSP
Trigger: TGGAGAGAGCACAGCCTGCCAGAGCTCAGTAGCGGG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGGAGTAGAGCCGTCGTaGTTTGTCAGAATGAACTGC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHGVEPS*FVRMNC
Trigger: GCAGTTCATTCTGACAAATCACGACGGCTCTACTCC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp ATAGTTGCTACATTCATCACTTGCCAGCACTGGGCAAGACCAAGAGTAAAAAGTCAGGCATATAAGACATaGACCAGGGGTAGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: IVATFITCQHWARPRVKSQAYKT*TRGRSP
Trigger: TGGACTCCTACCCCTGGTTCATGTCTTATATGCCTG...ACTTTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGATGAATGTAGCAACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR GCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGCTGGTTGACACCTGCTaGATCTGGAGTTGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQLVDTC*IWSCKE
Trigger: TTCCTTACAACTCCAGATGCAGCAGGTGTCAACCAG...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GTGATATGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGT +
Preference number: 4 (lower is better)
Translates to: VICCFLALEPGKKESKVPIESAQ*IDKNSS
Trigger: ACTGCTGTTCTTATCAATGCACTGGGCACTTTCGAT...GGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR GCA 90 bp GATATGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGGATATGCTGTTTTCTTaGCCTAGAGCCTGGAAAGAA +
Preference number: 4 (lower is better)
Translates to: DMLFSCPRAWKEGIESAQDMLFS*PRAWKE
Trigger: TTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATC...CTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAAAGCCGACGGGATGTaGGATCGAGATTCACGGCGG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRKADGM*DRDSRR
Trigger: CCGCCGTGAATCTCGATCCCACATCCCGTCGGCTTT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTAAAGCCGACGGGATGTaGGATCGAGATTCACGGCGG +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFKADGM*DRDSRR
Trigger: CCGCCGTGAATCTCGATCCCACATCCCGTCGGCTTT...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGAAACTTTTCCCGGAGTaGAATCTTGCCTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQKLFPE*NLAWPE
Trigger: TTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTTT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGATAAGAACAGCAGTCTaGAGGCAGACTCCCCAATGT +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQIRTAV*RQTPQC
Trigger: ACATTGGGGAGTCTGCCTCCAGACTGCTGTTCTTAT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGTGTTTGGGTATTTCTaGGGGGTCAGAGTTCGTGAC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHVFGYF*GVRVRD
Trigger: GTCACGAACTCTGACCCCCCAGAAATACCCAAACAC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTCCGGGAAGAGAGGTTaGAGAAAGCCGACGGGATGT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRSGKRG*RKPTGC
Trigger: ACATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATGTAACCTGCAGTATTaGCAGCGGTTTCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSCNLQY*QRFRWC
Trigger: GCACCACCGAAACCGCTGTCAATACTGCAGGTTACA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAGTGTCAAATGCCCTTaGAACATCACCGTTGGTCTG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHSVKCP*NITVGL
Trigger: CAGACCAACGGTGATGTTTCAAGGGCATTTGACACT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTACATGTGAATCGCTaGGAAGTGGCCCCTCTTTTT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLHVNR*EVAPLF
Trigger: AAAAAGAGGGGCCACTTCTCAGCGATTCACATGTAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGCTCGTCTTGTGAAATaGATGAGGGCTGCAATTACC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHARLVK*MRAAIT
Trigger: GGTAATTGCAGCCCTCATTCATTTCACAAGACGAGC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000330677.7
CDS-3UTR TCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCAACTCTTAAGATCATaGATGGCCTGTCTCACTGCC +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHQLLRS*MACLTA
Trigger: GGCAGTGAGACAGGCCATTCATGATCTTAAGAGTTG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTGGTTGACACCTGCTaGATCTGGAGTTGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLVDTC*IWSCKE
Trigger: TTCCTTACAACTCCAGATGCAGCAGGTGTCAACCAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGTACACTTCCTTCCATaGCCGCTACTGAGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRVHFLP*PLLSSG
Trigger: GCCAGAGCTCAGTAGCGGGCATGGAAGGAAGTGTAC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTGTACACTTCCTTCCATaGCCGCTACTGAGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFVHFLP*PLLSSG
Trigger: GCCAGAGCTCAGTAGCGGGCATGGAAGGAAGTGTAC...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAAACTTTTCCCGGAGTaGAATCTTGCCTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHKLFPE*NLAWPE
Trigger: TTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTTT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATATAAGAACAGCAGTCTaGAGGCAGACTCCCCAATGT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHIRTAV*RQTPQC
Trigger: ACATTGGGGAGTCTGCCTCCAGACTGCTGTTCTTAT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATCTTCTATGGTTGCCATaGTCTACCGGCGCTTTTGCG +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNLLWLP*STGAFA
Trigger: CGCAAAAGCGCCGGTAGATCATGGCAACCATAGAAG...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTTCTATGGTTGCCATaGTCTACCGGCGCTTTTGCG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLLWLP*STGAFA
Trigger: CGCAAAAGCGCCGGTAGATCATGGCAACCATAGAAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGTTGCCTTGGGTATTATaGTCAAGTGCTGTCACAATC +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQLPWVL*SSAVTI
Trigger: GATTGTGACAGCACTTGATCATAATACCCAAGGCAA...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCGTGATTTGTCAGAATaGACTGCTTGCCTTGGGTAT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHRDLSE*TACLGY
Trigger: ATACCCAAGGCAAGCAGTTCATTCTGACAAATCACG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTGTAACCTGCAGTATTaGCAGCGGTTTCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRCNLQY*QRFRWC
Trigger: GCACCACCGAAACCGCTGTCAATACTGCAGGTTACA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTGTCATCAGCACAGCTaGCTCAGTTTTTACTCCAGA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHCHQHS*LSFYSR
Trigger: TCTGGAGTAAAAACTGAGTCAGCTGTGCTGATGACA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACTGTCATCAGCACAGCTaGCTCAGTTTTTACTCCAGA +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHCHQHS*LSFYSR
Trigger: TCTGGAGTAAAAACTGAGTCAGCTGTGCTGATGACA...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGTGCTTGAATCTCCAGTaGTTAGGTGTACACTTCCTT +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQCLNLQ*LGVHFL
Trigger: AAGGAAGTGTACACCTAATCACTGGAGATTCAAGCA...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGATGCCTCAAAAGCAGTaGGTTCAATTTGGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQMPQKQ*VQFGVL
Trigger: CAAGACACCAAATTGAACTCACTGCTTTTGAGGCAT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR GCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATCCCGGAGTGGAATCTTaGCTGGCCAGAATGACTTTG +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNPGVES*LARMTL
Trigger: CAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGG...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCCCGGAGTGGAATCTTaGCTGGCCAGAATGACTTTG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRPGVES*LARMTL
Trigger: CAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAGCTCTGGCAGGCTGTaGTCTCTCCAGGATTCAATG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRSSGRL*SLQDSM
Trigger: CATTGAATCCTGGAGAGAGCACAGCCTGCCAGAGCT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCAGAATGACTTTGCTTaGAGTAGAGCCGTCGTGATT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHQNDFA*SRAVVI
Trigger: AATCACGACGGCTCTACTCCAAGCAAAGTCATTCTG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATATCACTTGCCAGCACTaGGCAAGACCAAGAGTAAAA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHITCQH*ARPRVK
Trigger: TTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGAT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGGCAGTGAGTTCAATTTaGTGTCTTGTGTTCTGGCAA +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQAVSSI*CLVFWQ
Trigger: TTGCCAGAACACAAGACACCAAATTGAACTCACTGC...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCTCAGGTCAGAAAAGTaGGAGAGAGATCAGATCCTT +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHLRSEK*ERDQIL
Trigger: AAGGATCTGATCTCTCTCCCACTTTTCTGACCTGAG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTTGCCTTGGGTATTATaGTCAAGTGCTGTCACAATC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLPWVL*SSAVTI
Trigger: GATTGTGACAGCACTTGATCATAATACCCAAGGCAA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATGGAGTAGAGCCGTCGTaGTTTGTCAGAATGAACTGC +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNGVEPS*FVRMNC
Trigger: GCAGTTCATTCTGACAAATCACGACGGCTCTACTCC...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGGAGTAGAGCCGTCGTaGTTTGTCAGAATGAACTGC +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRGVEPS*FVRMNC
Trigger: GCAGTTCATTCTGACAAATCACGACGGCTCTACTCC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAAGTGTCAAATGCCCTTaGAACATCACCGTTGGTCTG +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSSVKCP*NITVGL
Trigger: CAGACCAACGGTGATGTTTCAAGGGCATTTGACACT...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTGCTTGAATCTCCAGTaGTTAGGTGTACACTTCCTT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHCLNLQ*LGVHFL
Trigger: AAGGAAGTGTACACCTAATCACTGGAGATTCAAGCA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCAGGCATATAAGACATaGACCAGGGGTAGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRQAYKT*TRGRSP
Trigger: TGGACTCCTACCCCTGGTTCATGTCTTATATGCCTG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGATGACATTTTAAGGTaGTTACCCCTCTGCTTGTTG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHDDILR*LPLCLL
Trigger: CAACAAGCAGAGGGGTAATCACCTTAAAATGTCATC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393101.7
ENST00000552791.1
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAATTTCTTCTATGGTTaGCATGATCTACCGGCGCTT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHNFFYG*HDLPAL
Trigger: AAGCGCCGGTAGATCATGGCAACCATAGAAGAAATT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTACATCTCTGTAACCTaGAGTATTGACAGCGGTTTC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHYISVT*SIDSGF
Trigger: GAAACCGCTGTCAATACTGCAGGTTACAGAGATGTA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGAGGATTCAATGCTTTTaGAAGAGTGTCAAATGCCCT +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQRIQCF*KSVKCP
Trigger: AGGGCATTTGACACTCTTGCAAAAGCATTGAATCCT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHIESAQ*IDKNSS
Trigger: ACTGCTGTTCTTATCAATGCACTGGGCACTTTCGAT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR GCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGT +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHIESAQ*IDKNSS
Trigger: ACTGCTGTTCTTATCAATGCACTGGGCACTTTCGAT...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTTTCACCAGTGATATaGTGTTTTCTTGCCCTAGAG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLSPVI*CFLALE
Trigger: CTCTAGGGCAAGAAAACAGCATATCACTGGTGAAAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR GCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCTTTCACCAGTGATATaGTGTTTTCTTGCCCTAGAG +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHLSPVI*CFLALE
Trigger: CTCTAGGGCAAGAAAACAGCATATCACTGGTGAAAG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGAAATGAATGAGGGCTaGAATTACCTTGGCATCTTG +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHEMNEG*NYLGIL
Trigger: CAAGATGCCAAGGTAATTGCAGCCCTCATTCATTTC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000330677.7
CDS-3UTR GCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGTCATTTAATTTCTGCTaGCTGCCCAGTCACTTCAAA +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQSFNFC*LPSHFK
Trigger: TTTGAAGTGACTGGGCAGGCAGCAGAAATTAAATGA...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACGACACCTGCTGCATCTaGAGTTGTAAGGAAAACTTT +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHDTCCI*SCKENF
Trigger: AAAGTTTTCCTTACAACTCCAGATGCAGCAGGTGTC...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp GATATGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGTTGAAACATCACCGTTaGTCTGCATTTCTTGAAATT +
Preference number: 4 (lower is better)
Translates to: DMLFSCPRAWKEGIESAQLKHHR*SAFLEI
Trigger: AATTTCAAGAAATGCAGACCAACGGTGATGTTTCAA...CTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGGGCTGCAATTACCTTaGCATCTTGTTGAAGACTAT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHGLQLP*HLVEDY
Trigger: ATAGTCTTCAACAAGATGCCAAGGTAATTGCAGCCC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000330677.7
CDS-3UTR CCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTGTGTTTGGGTATTTCTaGGGGGTCAGAGTTCGTGAC +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFVFGYF*GVRVRD
Trigger: GTCACGAACTCTGACCCCCCAGAAATACCCAAACAC...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGATGAGCCACTACACCTaGCTAGTCTCTATTATTTTC +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQMSHYT*LVSIIF
Trigger: GAAAATAATAGAGACTAGCCAGGTGTAGTGGCTCAT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGTACTTAAATCTCCCTaGCATGATTCAGCCTTATCT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHVLKSP*HDSALS
Trigger: AGATAAGGCTGAATCATGTCAGGGAGATTTAAGTAC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAGTGTCAAATGCCCTTaGAACATCACCGTTGGTCTG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRSVKCP*NITVGL
Trigger: CAGACCAACGGTGATGTTTCAAGGGCATTTGACACT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTACATGTGAATCGCTaGGAAGTGGCCCCTCTTTTT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLHVNR*EVAPLF
Trigger: AAAAAGAGGGGCCACTTCTCAGCGATTCACATGTAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATCTACATGTGAATCGCTaGGAAGTGGCCCCTCTTTTT +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNLHVNR*EVAPLF
Trigger: AAAAAGAGGGGCCACTTCTCAGCGATTCACATGTAG...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACATTTTCTGCCCAGTTTaGTGCTCTGTAACAATCTCT +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHIFCPV*CSVTIS
Trigger: AGAGATTGTTACAGAGCAGCAAACTGGGCAGAAAAT...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCAGCGGTTTCGGTGGTaGTTATTAATAATACAATCC +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHQRFRW*LLIIQS
Trigger: GGATTGTATTATTAATAAGCACCACCGAAACCGCTG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCATTGGACAGAGTCTTaGTTCATTCCAAACGCAATA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHHWTES*FIPNAI
Trigger: TATTGCGTTTGGAATGAAGCAAGACTCTGTCCAATG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTCTCCAGGATTCAATaGTTTTGCAAGAGTGTCAAA +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLSRIQ*FCKSVK
Trigger: TTTGACACTCTTGCAAAAGCATTGAATCCTGGAGAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGGTAAAAATTTCCAGATaGCTCAAAAGCAGTGAGTTC +
Preference number: 4 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQVKISR*LKSSEF
Trigger: GAACTCACTGCTTTTGAGGCATCTGGAAATTTTTAC...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAAACTTTTCCCGGAGTaGAATCTTGCCTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRKLFPE*NLAWPE
Trigger: TTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTTT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGATAAGAACAGCAGTCTaGAGGCAGACTCCCCAATGT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRIRTAV*RQTPQC
Trigger: ACATTGGGGAGTCTGCCTCCAGACTGCTGTTCTTAT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAATCACTTGCCAGCACTaGGCAAGACCAAGAGTAAAA +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSITCQH*ARPRVK
Trigger: TTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGAT...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTCGTGATTTGTCAGAATaGACTGCTTGCCTTGGGTAT +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFRDLSE*TACLGY
Trigger: ATACCCAAGGCAAGCAGTTCATTCTGACAAATCACG...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTGTCATCAGCACAGCTaGCTCAGTTTTTACTCCAGA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRCHQHS*LSFYSR
Trigger: TCTGGAGTAAAAACTGAGTCAGCTGTGCTGATGACA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATACATCTCTGTAACCTaGAGTATTGACAGCGGTTTC +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSYISVT*SIDSGF
Trigger: GAAACCGCTGTCAATACTGCAGGTTACAGAGATGTA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAGATATGCTGTTTTCTTaGCCTAGAGCCTGGAAAGAA +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSDMLFS*PRAWKE
Trigger: TTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATC...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGGTTTTCTTTCACATTaGACAGAGTCTTGCTTCATT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHGFLSH*TESCFI
Trigger: AATGAAGCAAGACTCTGTCCAATGTGAAAGAAAACC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACGGTTTTCTTTCACATTaGACAGAGTCTTGCTTCATT +
Preference number: 4 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHGFLSH*TESCFI
Trigger: AATGAAGCAAGACTCTGTCCAATGTGAAAGAAAACC...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp GTTTTCAAATGCTGTGACCAATTATTTGAGAGTTATAATCTGCAGGCTCCATTTATAAGAACAGCAGTCTaGAGGCAGACTCCCCAATGT +
Preference number: 4 (lower is better)
Translates to: VFKCCDQLFESYNLQAPFIRTAV*RQTPQC
Trigger: ACATTGGGGAGTCTGCCTCCAGACTGCTGTTCTTAT...AAATGGAGCCTGCAGATTATAACTCTCAAATAATTGGTCACAGCATTTGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTCTTGCCCTAGAGCCTaGAAAGAAGGAATCGAAAGT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRSCPRA*KEGIES
Trigger: ACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTTCTTGCCCTAGAGCCTaGAAAGAAGGAATCGAAAGT +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFSCPRA*KEGIES
Trigger: ACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGA...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGATCACTTGCCAGCACTaGGCAAGACCAAGAGTAAAA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRITCQH*ARPRVK
Trigger: TTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGAT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp AATTCTTCAGTGATGGTAGCATTCATCAGTCTTAAAGCTGGCAATCTGAGTAGTGATGATCCTAGAGCCTaGAAAGAAGGAATCGAAAGT +
Preference number: 4 (lower is better)
Translates to: NSSVMVAFISLKAGNLSSDDPRA*KEGIES
Trigger: ACTTTCGATTCCTTCTTTCCAGGCTCTAGGATCATC...ACTACTCAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR TCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAGTACTTAAATCTCCCTaGCATGATTCAGCCTTATCT +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSVLKSP*HDSALS
Trigger: AGATAAGGCTGAATCATGTCAGGGAGATTTAAGTAC...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTGCTTGAATCTCCAGTaGTTAGGTGTACACTTCCTT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRCLNLQ*LGVHFL
Trigger: AAGGAAGTGTACACCTAATCACTGGAGATTCAAGCA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR TCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAGTAAGATGGGAATGTaGTGCTGCCTTCTAGTAGAT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRSKMGM*CCLLVD
Trigger: ATCTACTAGAAGGCAGCATCACATTCCCATCTTACT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR TCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTTTGGATGATCTGGACTaGAGAGTACTATTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFLDDLD*RVLLPS
Trigger: TGAAGGCAATAGTACTCTTCAGTCCAGATCATCCAA...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTTTTTCTAGGCTTGGATaGTCTGGACTGAAGAGTACT +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFFSRLG*SGLKST
Trigger: AGTACTCTTCAGTCCAGATCATCCAAGCCTAGAAAA...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
39% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTTTAAAGCTGGCAATCTaGGTAGTAGTCTGGATAACC +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFLKLAI*VVVWIT
Trigger: GGTTATCCAGACTACTACTCAGATTGCCAGCTTTAA...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR TCA 90 bp AAAAACAATTCTTCAGTGATGGTAGCATTCATCAGTCTTAAAGCTGGCAATCTGTTAAAGCTGGCAATCTaGGTAGTAGTCTGGATAACC +
Preference number: 4 (lower is better)
Translates to: KNNSSVMVAFISLKAGNLLKLAI*VVVWIT
Trigger: GGTTATCCAGACTACTACTCAGATTGCCAGCTTTAA...CAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATTGTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATATGCCTCAAAAGCAGTaGGTTCAATTTGGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNMPQKQ*VQFGVL
Trigger: CAAGACACCAAATTGAACTCACTGCTTTTGAGGCAT...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR GCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATAATTTCTTCTATGGTTaGCATGATCTACCGGCGCTT +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNNFFYG*HDLPAL
Trigger: AAGCGCCGGTAGATCATGGCAACCATAGAAGAAATT...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRIESAQ*IDKNSS
Trigger: ACTGCTGTTCTTATCAATGCACTGGGCACTTTCGAT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTTTCACCAGTGATATaGTGTTTTCTTGCCCTAGAG +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLSPVI*CFLALE
Trigger: CTCTAGGGCAAGAAAACAGCATATCACTGGTGAAAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGACACCTGCTGCATCTaGAGTTGTAAGGAAAACTTT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRDTCCI*SCKENF
Trigger: AAAGTTTTCCTTACAACTCCAGATGCAGCAGGTGTC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATATCAAAAACCTTATTTaGTCCTTGGTCTGGAGAATT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHIKNLI*SLVWRI
Trigger: AATTCTCCAGACCAAGGACCAAATAAGGTTTTTGAT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTTGAAACATCACCGTTaGTCTGCATTTCTTGAAATT +
Preference number: 4 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLKHHR*SAFLEI
Trigger: AATTTCAAGAAATGCAGACCAACGGTGATGTTTCAA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATGCAGTGAGTTCAATTTaGTGTCTTGTGTTCTGGCAA +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNAVSSI*CLVFWQ
Trigger: TTGCCAGAACACAAGACACCAAATTGAACTCACTGC...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATTGTTTAAACTTGCCTTaGGAACATGTACTGGCTATG +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNCLNLP*EHVLAM
Trigger: CATAGCCAGTACATGTTCTCAAGGCAAGTTTAAACA...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR TCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTCCGAGGAGTCTAAAATaGATTTGTTGTAGCAGTAAC +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFPRSLK*ICCSSN
Trigger: GTTACTGCTACAACAAATTCATTTTAGACTCCTCGG...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGATTTTCTGCCCAGTTTaGTGCTCTGTAACAATCTCT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRIFCPV*CSVTIS
Trigger: AGAGATTGTTACAGAGCAGCAAACTGGGCAGAAAAT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTCAGCGGTTTCGGTGGTaGTTATTAATAATACAATCC +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFQRFRW*LLIIQS
Trigger: GGATTGTATTATTAATAAGCACCACCGAAACCGCTG...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCAGCGGTTTCGGTGGTaGTTATTAATAATACAATCC +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRQRFRW*LLIIQS
Trigger: GGATTGTATTATTAATAAGCACCACCGAAACCGCTG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCATTGGACAGAGTCTTaGTTCATTCCAAACGCAATA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRHWTES*FIPNAI
Trigger: TATTGCGTTTGGAATGAAGCAAGACTCTGTCCAATG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATCATTGGACAGAGTCTTaGTTCATTCCAAACGCAATA +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNHWTES*FIPNAI
Trigger: TATTGCGTTTGGAATGAAGCAAGACTCTGTCCAATG...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAGGATTCAATGCTTTTaGAAGAGTGTCAAATGCCCT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRRIQCF*KSVKCP
Trigger: AGGGCATTTGACACTCTTGCAAAAGCATTGAATCCT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTCTCCAGGATTCAATaGTTTTGCAAGAGTGTCAAA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLSRIQ*FCKSVK
Trigger: TTTGACACTCTTGCAAAAGCATTGAATCCTGGAGAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTCTCTCCAGGATTCAATaGTTTTGCAAGAGTGTCAAA +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFLSRIQ*FCKSVK
Trigger: TTTGACACTCTTGCAAAAGCATTGAATCCTGGAGAG...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AGAGTTATAATCTGCAGGCTCCATTTTCAAAATATGTGGGATAACACTGTCAATATCGAAAGTGCCCAGTaGATTGATAAGAACAGCAGT +
Preference number: 4 (lower is better)
Translates to: RVIICRLHFQNMWDNTVNIESAQ*IDKNSS
Trigger: ACTGCTGTTCTTATCAATGCACTGGGCACTTTCGAT...ATTGACAGTGTTATCCCACATATTTTGAAAATGGAGCCTGCAGATTATAACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR GCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATTCATTTAATTTCTGCTaGCTGCCCAGTCACTTCAAA +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNSFNFC*LPSHFK
Trigger: TTTGAAGTGACTGGGCAGGCAGCAGAAATTAAATGA...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTTGAAGCGGCACAGTTaGAAGATTTTTCTCGTGATA +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLKRHS*KIFLVI
Trigger: TATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATTTGAAGCGGCACAGTTaGAAGATTTTTCTCGTGATA +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNLKRHS*KIFLVI
Trigger: TATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAA...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATGGTGTCTTGTGTTCTaGCAAAGAACAGTTAAGTTT +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSWCLVF*QRTVKF
Trigger: AAACTTAACTGTTCTTTGCCAGAACACAAGACACCA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR TCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATAAAGGATTATTTCCCTaGTTCCTTGGCTTACTAAAC +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNKGLFP*FLGLLN
Trigger: GTTTAGTAAGCCAAGGAATCAGGGAAATAATCCTTT...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAGGTATTATGATCAAGTaGTGTCACAATCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSGIMIK*CHNLDF
Trigger: AAAATCCAGATTGTGACAGCACTTGATCATAATACC...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTTTAATTTCTGCTGCCTaGCCAGTCACTTCAAAAATT +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFLISAA*PVTSKI
Trigger: AATTTTTGAAGTGACTGGGCAGGCAGCAGAAATTAA...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAATCAAAAACCTTATTTaGTCCTTGGTCTGGAGAATT +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSIKNLI*SLVWRI
Trigger: AATTCTCCAGACCAAGGACCAAATAAGGTTTTTGAT...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATTGAAACATCACCGTTaGTCTGCATTTCTTGAAATT +
Preference number: 4 (lower is better)
Translates to: KESGRKIHLISAACPVTSLKHHR*SAFLEI
Trigger: AATTTCAAGAAATGCAGACCAACGGTGATGTTTCAA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATAAGAATAAATTACTGTaGAAGACATCCGAGGAGTCT +
Preference number: 4 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNKNKLL*KTSEES
Trigger: AGACTCCTCGGATGTCTTCCACAGTAATTTATTCTT...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR GCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGGTATTATGATCAAGTaGTGTCACAATCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRGIMIK*CHNLDF
Trigger: AAAATCCAGATTGTGACAGCACTTGATCATAATACC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR GCA 90 bp GTGACCAATTATTTGAGAGTTATAATCTGCAGGCTCCATTTTCAAAATATGTGGGTAAAAATTTCCAGATaGCTCAAAAGCAGTGAGTTC +
Preference number: 4 (lower is better)
Translates to: VTNYLRVIICRLHFQNMWVKISR*LKSSEF
Trigger: GAACTCACTGCTTTTGAGGCATCTGGAAATTTTTAC...CCACATATTTTGAAAATGGAGCCTGCAGATTATAACTCTCAAATAATTGGTCAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR GCA 90 bp AGAGTTATAATCTGCAGGCTCCATTTTCAAAATATGTGGGATAACACTGTCAATTTAATTTCTGCTGCCTaGCCAGTCACTTCAAAAATT +
Preference number: 4 (lower is better)
Translates to: RVIICRLHFQNMWDNTVNLISAA*PVTSKI
Trigger: AATTTTTGAAGTGACTGGGCAGGCAGCAGAAATTAA...ATTGACAGTGTTATCCCACATATTTTGAAAATGGAGCCTGCAGATTATAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR GCA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTAAAATGTACTCTGAGTaGATTATCCGTGTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFKMYSE*IIRVCF
Trigger: AAAGCAAACACGGATAATGCACTCAGAGTACATTTT...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGATCAAAAACCTTATTTaGTCCTTGGTCTGGAGAATT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRIKNLI*SLVWRI
Trigger: AATTCTCCAGACCAAGGACCAAATAAGGTTTTTGAT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CCA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTTGAAACATCACCGTTaGTCTGCATTTCTTGAAATT +
Preference number: 4 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLKHHR*SAFLEI
Trigger: AATTTCAAGAAATGCAGACCAACGGTGATGTTTCAA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CCA 90 bp TCAAATGCTGTGACCAATTATTTGAGAGTTATAATCTGCAGGCTCCATTTTCAATGGTGTCTTGTGTTCTaGCAAAGAACAGTTAAGTTT +
Preference number: 4 (lower is better)
Translates to: SNAVTNYLRVIICRLHFQWCLVF*QRTVKF
Trigger: AAACTTAACTGTTCTTTGCCAGAACACAAGACACCA...TTGAAAATGGAGCCTGCAGATTATAACTCTCAAATAATTGGTCACAGCATTTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS CCA 90 bp GCGTCGGGCGCCGACGCGACAGTCCCGCGGCTGCCACTCGTGGATTaGGGGGCGCTCCGGGAAGAGAGGTTGAAGAAAGCCGACGGGATG +
Preference number: 5 (lower is better)
Translates to: ASGADATVPRLPLVD*GALREERLKKADGM
Trigger: CATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGAGCGCCCCCCAATCCACGAGTGGCAGCCGCGGGACTGTCGCGTCGGCGCCCGACGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000546367.5
ENST00000548966.5
ENST00000549482.1
ENST00000551386.1
ENST00000552861.5
ENST00000622476.4
CDS GCA 90 bp AGTCATTCTGTCCGTCCCGTGAAAGCACGGGAGTTAGTGACGGGATaGAGGCCGGGACTTGCGGCCACTAGCCGAGGGTCGGCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: SHSVRPVKARELVTG*RPGLAATSRGSASP
Trigger: GGGAGAGGCCGACCCTCGGCTAGTGGCCGCAAGTCCCGGCCTGCATCCCGTCACTAACTCCCGTGCTTTCACGGGACGGACAGAATGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS TCA 90 bp GACATGCCCCCTGCAGTGAGAACCCTGGGGCCGTTCCATTTCTTCTaGAAAGATCCAGGCCCACAGGCAGCGACGACCCTGGCCAGATTT +
Preference number: 5 (lower is better)
Translates to: DMPPAVRTLGPFHFF*KDPGPQAATTLARF
Trigger: AAATCTGGCCAGGGTCGTCGCTGCCTGTGGGCCTGGATCTTTTCAGAAGAAATGGAACGGCCCCAGGGTTCTCACTGCAGGGGGCATGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS CCA 90 bp GATCGAGATTCACGGCGGAGAGAGCTTTCTGTGTTTGGGTATTTCTaGGGGGTCAGAGTTCGTGACCTCTTTCTCGGCTCGGCGGCGCGC +
Preference number: 5 (lower is better)
Translates to: DRDSRRRELSVFGYF*GVRVRDLFLGSAAR
Trigger: GCGCGCCGCCGAGCCGAGAAAGAGGTCACGAACTCTGACCCCCCAGAAATACCCAAACACAGAAAGCTCTCTCCGCCGTGAATCTCGATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333003.10
ENST00000551386.1
ENST00000622476.4
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGATCTACCGGCGCTTTaGCGCCCTGCTGACTCCGGC +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHDLPAL*RPADSG
Trigger: GCCGGAGTCAGCAGGGCGCAAAAGCGCCGGTAGATC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACGATCTACCGGCGCTTTaGCGCCCTGCTGACTCCGGC +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHDLPAL*RPADSG
Trigger: GCCGGAGTCAGCAGGGCGCAAAAGCGCCGGTAGATC...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS TCA 90 bp GAAGTGGCCCCTCTTTTTCGGTGTAATTTATGCTTGAATCTCCAGTaGTTAGGTGTACACTTCCTTCCATGCCCGCTACTGAGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: EVAPLFRCNLCLNLQ*LGVHFLPCPLLSSG
Trigger: GCCAGAGCTCAGTAGCGGGCATGGAAGGAAGTGTACACCTAATCACTGGAGATTCAAGCATAAATTACACCGAAAAAGAGGGGCCACTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546416.5
ENST00000552861.5
ENST00000622476.4
CDS CCA 90 bp AACTTTTCCCGGAGTGGAATCTTGCCTGGCCAGAATGACTTTGCTTaGAGTAGAGCCGTCGTGATTTGTCAGAATGAACTGCTTGCCTTG +
Preference number: 5 (lower is better)
Translates to: NFSRSGILPGQNDFA*SRAVVICQNELLAL
Trigger: CAAGGCAAGCAGTTCATTCTGACAAATCACGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTCCGGGAAGAGAGGTaGAAGAAAGCCGACGGGATG +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLREER*KKADGM
Trigger: CATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCTGGCCAGAATGACTTaGCTTGGAGTAGAGCCGTCG +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLARMT*LGVEPS
Trigger: CGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATATGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCAGAAAGTGCCCAGTGCATaGATAAGAACAGCAGTCTGG +
Preference number: 5 (lower is better)
Translates to: DMLFSCPRAWKEGIESAQKVPSA*IRTAVW
Trigger: CCAGACTGCTGTTCTTATCAATGCACTGGGCACTTT...CTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CAA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCACTCCGGGAAGAGAGGTaGAAGAAAGCCGACGGGATG +
Preference number: 5 (lower is better)
Translates to: KESGRKIHLISAACPVTSLREER*KKADGM
Trigger: CATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGAG...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTCCCGGAGTGGAATCTaGCCTGGCCAGAATGACTTT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHSRSGI*PGQNDF
Trigger: AAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTGCTACATTCATCACTaGCCAGCACTGGGCAAGACC +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHCYIHH*PALGKT
Trigger: GGTCTTGCCCAGTGCTGGCAAGTGATGAATGTAGCA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACTGCTACATTCATCACTaGCCAGCACTGGGCAAGACC +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHCYIHH*PALGKT
Trigger: GGTCTTGCCCAGTGCTGGCAAGTGATGAATGTAGCA...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTCCGGGAAGAGAGGTaGAAGAAAGCCGACGGGATG +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLREER*KKADGM
Trigger: CATCCCGTCGGCTTTCTTCAACCTCTCTTCCCGGAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GTGATATGCTGTTTTCTTGCCCTAGAGCCTGGAAAGAAGGAATCGAAAGTGCCCTTACCCCTCTGCTTGTaGAAGACTATTGTGAAGACA +
Preference number: 5 (lower is better)
Translates to: VICCFLALEPGKKESKVPLPLCL*KTIVKT
Trigger: TGTCTTCACAATAGTCTTCAACAAGCAGAGGGGTAA...GGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAAAACAGCATATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CAA 90 bp ATAGTTGCTACATTCATCACTTGCCAGCACTGGGCAAGACCAAGAGTAAAAAGTGAAGGCATGGTGAGCTaGAAACATCACCGTTGGTCT +
Preference number: 5 (lower is better)
Translates to: IVATFITCQHWARPRVKSEGMVS*KHHRWS
Trigger: AGACCAACGGTGATGTTTCAAGCTCACCATGCCTTC...ACTTTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGATGAATGTAGCAACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS-3UTR CAA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATCTGGCCAGAATGACTTaGCTTGGAGTAGAGCCGTCG +
Preference number: 5 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNLARMT*LGVEPS
Trigger: CGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAG...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCTGGCCAGAATGACTTaGCTTGGAGTAGAGCCGTCG +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLARMT*LGVEPS
Trigger: CGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCATCCCGGAGTGGAATCTaGCCTGGCCAGAATGACTTT +
Preference number: 5 (lower is better)
Translates to: KESGRKIHLISAACPVTSSRSGI*PGQNDF
Trigger: AAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGA...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGAGTGTCAAATGCCCTaGAAACATCACCGTTGGTCT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHECQMP*KHHRWS
Trigger: AGACCAACGGTGATGTTTCAAGGGCATTTGACACTC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAAAGTGCCCAGTGCATaGATAAGAACAGCAGTCTGG +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHKVPSA*IRTAVW
Trigger: CCAGACTGCTGTTCTTATCAATGCACTGGGCACTTT...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCCATACATGACAGGTTaGGGAAGCTCTAACTCAGGT +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHPYMTG*GSSNSG
Trigger: ACCTGAGTTAGAGCTTCCCAAACCTGTCATGTATGG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS CCA 90 bp TTGTCTCCACATACTACGCAAAGATCAAAAACCTTATTTGGTCCTTaGTCTGGAGAATTATCTGTTAGGAGCTGCAGGTGTTGTGCAGAC +
Preference number: 5 (lower is better)
Translates to: LSPHTTQRSKTLFGP*SGELSVRSCRCCAD
Trigger: GTCTGCACAACACCTGCAGCTCCTAACAGATAATTCTCCAGACCAAGGACCAAATAAGGTTTTTGATCTTTGCGTAGTATGTGGAGACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548966.5
ENST00000552861.5
ENST00000622476.4
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACGATTTTCTGCCCAGTTaGCTGCTCTGTAACAATCTC +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHDFLPS*LLCNNL
Trigger: GAGATTGTTACAGAGCAGCAAACTGGGCAGAAAATC...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTCCCGGAGTGGAATCTaGCCTGGCCAGAATGACTTT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRSRSGI*PGQNDF
Trigger: AAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGACATTGGACAGAGTCTaGCTTCATTCCAAACGCAAT +
Preference number: 5 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQTLDRV*LHSKRN
Trigger: ATTGCGTTTGGAATGAAGCAAGACTCTGTCCAATGT...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGGGGTTTTCTTTCACATaGGACAGAGTCTTGCTTCAT +
Preference number: 5 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQGFSFT*DRVLLH
Trigger: ATGAAGCAAGACTCTGTCCAATGTGAAAGAAAACCC...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGTTGAAGCGGCACAGTaGGAAGATTTTTCTCGTGAT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHVEAAQ*EDFSRD
Trigger: ATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAAC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATCAGGATTCAATGCTTTaGCAAGAGTGTCAAATGCCC +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHQDSML*QECQMP
Trigger: GGGCATTTGACACTCTTGCAAAAGCATTGAATCCTG...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTGCTACATTCATCACTaGCCAGCACTGGGCAAGACC +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRCYIHH*PALGKT
Trigger: GGTCTTGCCCAGTGCTGGCAAGTGATGAATGTAGCA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGCAGTGAGTTCAATTaGGTGTCTTGTGTTCTGGCA +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHSSEFN*VSCVLA
Trigger: TGCCAGAACACAAGACACCAAATTGAACTCACTGCT...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CAA 90 bp AATTCTTCAGTGATGGTAGCATTCATCAGTCTTAAAGCTGGCAATCTGAGTAGTCCATGTTTTCTAGGCTaGGATGATCCTAGAGCCTGG +
Preference number: 5 (lower is better)
Translates to: NSSVMVAFISLKAGNLSSPCFLG*DDPRAW
Trigger: CCAGGCTCTAGGATCATCCAAGCCTAGAAAACATGG...ACTACTCAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS CCA 90 bp CTGTTGAAGCGGCACAGTTGGAAGATTTTTCTCGTGATACTTCAATaGGTTTTCTTTCACATTGGACAGAGTCTTGCTTCATTCCAAACG +
Preference number: 5 (lower is better)
Translates to: LLKRHSWKIFLVILQ*VFFHIGQSLASFQT
Trigger: CGTTTGGAATGAAGCAAGACTCTGTCCAATGTGAAAGAAAACCCATTGAAGTATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000622476.4
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATACATTGGACAGAGTCTaGCTTCATTCCAAACGCAAT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHTLDRV*LHSKRN
Trigger: ATTGCGTTTGGAATGAAGCAAGACTCTGTCCAATGT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGGGTTTTCTTTCACATaGGACAGAGTCTTGCTTCAT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHGFSFT*DRVLLH
Trigger: ATGAAGCAAGACTCTGTCCAATGTGAAAGAAAACCC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAAAAGTGCCCAGTGCATaGATAAGAACAGCAGTCTGG +
Preference number: 5 (lower is better)
Translates to: KESGRKIHLISAACPVTSKVPSA*IRTAVW
Trigger: CCAGACTGCTGTTCTTATCAATGCACTGGGCACTTT...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CAA 90 bp TGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAGGCTGTGACCAATTATTaGAGAGTTATAATCTGCAGG +
Preference number: 5 (lower is better)
Translates to: WCLVFWQRTVKFTALQSQAVTNY*RVIICR
Trigger: CCTGCAGATTATAACTCTCAAATAATTGGTCACAGC...CTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTTACCCCTCTGCTTGTaGAAGACTATTGTGAAGACA +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLPLCL*KTIVKT
Trigger: TGTCTTCACAATAGTCTTCAACAAGCAGAGGGGTAA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393101.7
ENST00000552791.1
CDS TCA 90 bp GTTTGCTGCTCTGTAACAATCTCTCCCATCTGTTGTTCAATAATTTaGTGTGCAATTTCTTCTATGGTTGCCATGATCTACCGGCGCTTT +
Preference number: 5 (lower is better)
Translates to: VCCSVTISPICCSII*CAISSMVAMIYRRF
Trigger: AAAGCGCCGGTAGATCATGGCAACCATAGAAGAAATTGCACATCAAATTATTGAACAACAGATGGGAGAGATTGTTACAGAGCAGCAAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000546367.5
ENST00000552861.5
ENST00000622476.4
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGATCAAAAACCTTATTaGGTCCTTGGTCTGGAGAAT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHDQKPY*VLGLEN
Trigger: ATTCTCCAGACCAAGGACCAAATAAGGTTTTTGATC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACGATCAAAAACCTTATTaGGTCCTTGGTCTGGAGAAT +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHDQKPY*VLGLEN
Trigger: ATTCTCCAGACCAAGGACCAAATAAGGTTTTTGATC...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACTTACAAAAGTTGGAGTaGCAGTTAATGGGCTACGAA +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHLQKLE*QLMGYE
Trigger: TTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAA...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTTACAAAAGTTGGAGTaGCAGTTAATGGGCTACGAA +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHLQKLE*QLMGYE
Trigger: TTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACACAGTCCTGTTGACCTaGTACTTTCACTATCTGTTA +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHTVLLT*YFHYLL
Trigger: TAACAGATAGTGAAAGTACAAGGTCAACAGGACTGT...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATGTTGGTCTGCATTTCTaGAAATTCACACAAAGAGGT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHVGLHF*KFTQRG
Trigger: ACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAAC...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CAA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATGAGTGTCAAATGCCCTaGAAACATCACCGTTGGTCT +
Preference number: 5 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNECQMP*KHHRWS
Trigger: AGACCAACGGTGATGTTTCAAGGGCATTTGACACTC...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGAGTGTCAAATGCCCTaGAAACATCACCGTTGGTCT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRECQMP*KHHRWS
Trigger: AGACCAACGGTGATGTTTCAAGGGCATTTGACACTC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATTACCTTGGCATCTTGTaGAAGACTATTGTGAAGACA +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHYLGIL*KTIVKT
Trigger: TGTCTTCACAATAGTCTTCAACAAGATGCCAAGGTA...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000330677.7
CDS TCA 90 bp TCAGCACAGCTGACTCAGTTTTTACTCCAGATGGATGAATATTCATaGACATTCCTGAATCTAACAGTCCTGTTGACCTTGTACTTTCAC +
Preference number: 5 (lower is better)
Translates to: SAQLTQFLLQMDEYS*TFLNLTVLLTLYFH
Trigger: GTGAAAGTACAAGGTCAACAGGACTGTTAGATTCAGGAATGTTCATGAATATTCATCCATCTGGAGTAAAAACTGAGTCAGCTGTGCTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000547594.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS TCA 90 bp AGAAGGCATGGTGAGCTTGAAACATCACCGTTGGTCTGCATTTCTTaGAATTCACACAAAGAGGTATCATCATTGCTTAAGCTTTCAATC +
Preference number: 5 (lower is better)
Translates to: RRHGELETSPLVCIS*NSHKEVSSLLKLSI
Trigger: GATTGAAAGCTTAAGCAATGATGATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGCTCACCATGCCTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS CCA 90 bp AACCTGGCAACATTCGTACTGCACAAAAATGGTATCTGCCCGAGTTaGAAGAATTATTTCTTAACAAAAGAGCTATCTATCGGAAGCTTG +
Preference number: 5 (lower is better)
Translates to: NLATFVLHKNGICPS*KNYFLTKELSIGSL
Trigger: CAAGCTTCCGATAGATAGCTCTTTTGTTAAGAAATAATTCTTCCAACTCGGGCAGATACCATTTTTGTGCAGTACGAATGTTGCCAGGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS CCA 90 bp CTGAAGATTATGGGACAACCTGGCAACATTCGTACTGCACAAAAATaGTATCTGCCCGAGTTGGAAGAATTATTTCTTAACAAAAGAGCT +
Preference number: 5 (lower is better)
Translates to: LKIMGQPGNIRTAQK*YLPELEELFLNKRA
Trigger: AGCTCTTTTGTTAAGAAATAATTCTTCCAACTCGGGCAGATACCATTTTTGTGCAGTACGAATGTTGCCAGGTTGTCCCATAATCTTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAATCTCTCCCATCTGTaGTTCAATAATTTGATGTGC +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHNLSHL*FNNLMC
Trigger: GCACATCAAATTATTGAACAACAGATGGGAGAGATT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGATTTTCTGCCCAGTTaGCTGCTCTGTAACAATCTC +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRDFLPS*LLCNNL
Trigger: GAGATTGTTACAGAGCAGCAAACTGGGCAGAAAATC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGTTGAAGCGGCACAGTaGGAAGATTTTTCTCGTGAT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRVEAAQ*EDFSRD
Trigger: ATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAAC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTGTTGAAGCGGCACAGTaGGAAGATTTTTCTCGTGAT +
Preference number: 5 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFVEAAQ*EDFSRD
Trigger: ATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAAC...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AGGCTTTATAACCATTACAGGCATATAAGACATGAACCAGGGGTAGGAGTCCATAATCTAACAGTCCTGTaGACCTTGTACTTTCACTAT +
Preference number: 5 (lower is better)
Translates to: RLYNHYRHIRHEPGVGVHNLTVL*TLYFHY
Trigger: ATAGTGAAAGTACAAGGTCAACAGGACTGTTAGATT...ATGGACTCCTACCCCTGGTTCATGTCTTATATGCCTGTAATGGTTATAAAGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACAATCTAACAGTCCTGTaGACCTTGTACTTTCACTAT +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHNLTVL*TLYFHY
Trigger: ATAGTGAAAGTACAAGGTCAACAGGACTGTTAGATT...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGCAGGATTCAATGCTTTaGCAAGAGTGTCAAATGCCC +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRQDSML*QECQMP
Trigger: GGGCATTTGACACTCTTGCAAAAGCATTGAATCCTG...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTCAGGATTCAATGCTTTaGCAAGAGTGTCAAATGCCC +
Preference number: 5 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFQDSML*QECQMP
Trigger: GGGCATTTGACACTCTTGCAAAAGCATTGAATCCTG...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp TTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTACAGCACTGCAGTCACCTGTCAATTCGTATATaGCCAATGAGACCTTTGAAA +
Preference number: 5 (lower is better)
Translates to: FGVLCSGKEQLSLQHCSHLSIRI*PMRPLK
Trigger: TTTCAAAGGTCTCATTGGCAATATACGAATTGACAG...GTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CAA 90 bp AAAAACAATTCTTCAGTGATGGTAGCATTCATCAGTCTTAAAGCTGGCAATCTGAGCAGTGAGTTCAATTaGGTGTCTTGTGTTCTGGCA +
Preference number: 5 (lower is better)
Translates to: KNNSSVMVAFISLKAGNLSSEFN*VSCVLA
Trigger: TGCCAGAACACAAGACACCAAATTGAACTCACTGCT...CAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATTGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS TCA 90 bp TCTTGCTTCATTCCAAACGCAATACATCTCTGTAACCTGCAGTATTaGCAGCGGTTTCGGTGGTGCTTATTAATAATACAATCCTTTGAT +
Preference number: 5 (lower is better)
Translates to: SCFIPNAIHLCNLQY*QRFRWCLLIIQSFD
Trigger: ATCAAAGGATTGTATTATTAATAAGCACCACCGAAACCGCTGTCAATACTGCAGGTTACAGAGATGTATTGCGTTTGGAATGAAGCAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000552861.5
ENST00000622476.4
CDS TCA 90 bp AGAGTGTCAAATGCCCTTGAAACATCACCGTTGGTCTGCATTTCTTaGAATTCACACAAAGAGGTATCATCATTGCTTAAGCTTTCAATC +
Preference number: 5 (lower is better)
Translates to: RVSNALETSPLVCIS*NSHKEVSSLLKLSI
Trigger: GATTGAAAGCTTAAGCAATGATGATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGGGCATTTGACACTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAATGAACTGCTTGCCTaGGGTATTATGATCAAGTGC +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRNELLA*GIMIKC
Trigger: GCACTTGATCATAATACCCAAGGCAAGCAGTTCATT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTAATGAACTGCTTGCCTaGGGTATTATGATCAAGTGC +
Preference number: 5 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFNELLA*GIMIKC
Trigger: GCACTTGATCATAATACCCAAGGCAAGCAGTTCATT...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCAAACCTTATTTGGTCCTaGGTCTGGAGAATTATCTGT +
Preference number: 5 (lower is better)
Translates to: KESGRKIHLISAACPVTSNLIWS*VWRIIC
Trigger: ACAGATAATTCTCCAGACCAAGGACCAAATAAGGTT...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGGGTTTTCTTTCACATaGGACAGAGTCTTGCTTCAT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRGFSFT*DRVLLH
Trigger: ATGAAGCAAGACTCTGTCCAATGTGAAAGAAAACCC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp AAAAACAATTCTTCAGTGATGGTAGCATTCATCAGTCTTAAAGCTGGCAATCTGGTTCAATTTGGTGTCTaGTGTTCTGGCAAAGAACAG +
Preference number: 5 (lower is better)
Translates to: KNNSSVMVAFISLKAGNLVQFGV*CSGKEQ
Trigger: CTGTTCTTTGCCAGAACACAAGACACCAAATTGAAC...CAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATTGTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS TCA 90 bp ATGCTGTTTTCTTGCCTTGAAACATCACCGTTGGTCTGCATTTCTTaGAATTCACACAAAGAGGTATCATCATTGCTTAAGCTTTCAATC +
Preference number: 5 (lower is better)
Translates to: MLFSCLETSPLVCIS*NSHKEVSSLLKLSI
Trigger: GATTGAAAGCTTAAGCAATGATGATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGGCAAGAAAACAGCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547594.5
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAACCTTATTTGGTCCTaGGTCTGGAGAATTATCTGT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRNLIWS*VWRIIC
Trigger: ACAGATAATTCTCCAGACCAAGGACCAAATAAGGTT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGTTACAAAAGTTGGAGTaGCAGTTAATGGGCTACGAA +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRLQKLE*QLMGYE
Trigger: TTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAA...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGACAGTCCTGTTGACCTaGTACTTTCACTATCTGTTA +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRTVLLT*YFHYLL
Trigger: TAACAGATAGTGAAAGTACAAGGTCAACAGGACTGT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATGTTGGTCTGCATTTCTaGAAATTCACACAAAGAGGT +
Preference number: 5 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNVGLHF*KFTQRG
Trigger: ACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAAC...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGGTTGGTCTGCATTTCTaGAAATTCACACAAAGAGGT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRVGLHF*KFTQRG
Trigger: ACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAAC...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000330677.7
ENST00000393101.7
ENST00000552791.1
CDS-3UTR CAA 90 bp AAAGCAGTGAGTTCAATTTGGTGTCTTGTGTTCTGGCAAAGAACAGTTAAGTTTCAAAACTCCTGTAGTTaGAAGATGTGCTCCATCAAT +
Preference number: 5 (lower is better)
Translates to: KAVSSIWCLVFWQRTVKFQNSCS*KMCSIN
Trigger: ATTGATGGAGCACATCTTCAAACTACAGGAGTTTTG...AAACTTAACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp AAGGAATCAGGAAGAAAAATTCATTTAATTTCTGCTGCCTGCCCAGTCACTTCACTGTCAATTCGTATATaGCCAATGAGACCTTTGAAA +
Preference number: 5 (lower is better)
Translates to: KESGRKIHLISAACPVTSLSIRI*PMRPLK
Trigger: TTTCAAAGGTCTCATTGGCAATATACGAATTGACAG...TGAAGTGACTGGGCAGGCAGCAGAAATTAAATGAATTTTTCTTCCTGATTCCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333003.10
ENST00000551647.5
CDS-3UTR CAA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATAATCTCTCCCATCTGTaGTTCAATAATTTGATGTGC +
Preference number: 5 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNNLSHL*FNNLMC
Trigger: GCACATCAAATTATTGAACAACAGATGGGAGAGATT...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAATCTCTCCCATCTGTaGTTCAATAATTTGATGTGC +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRNLSHL*FNNLMC
Trigger: GCACATCAAATTATTGAACAACAGATGGGAGAGATT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAATCTAACAGTCCTGTaGACCTTGTACTTTCACTAT +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRNLTVL*TLYFHY
Trigger: ATAGTGAAAGTACAAGGTCAACAGGACTGTTAGATT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000330677.7
ENST00000393101.7
CDS-3UTR CAA 90 bp GATGGGAATGTGATGCTGCCTTCTAGTAGATCTATTTTTGATGACATTTTAAGGAATTACCTTGGCATCTaGTTGAAGACTATTGTGAAG +
Preference number: 5 (lower is better)
Translates to: DGNVMLPSSRSIFDDILRNYLGI*LKTIVK
Trigger: CTTCACAATAGTCTTCAACAAGATGCCAAGGTAATT...CCTTAAAATGTCATCAAAAATAGATCTACTAGAAGGCAGCATCACATTCCCATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000330677.7
CDS-3UTR CAA 90 bp GTTTTCAAATGCTGTGACCAATTATTTGAGAGTTATAATCTGCAGGCTCCATTTGCTGTGACCAATTATTaGAGAGTTATAATCTGCAGG +
Preference number: 5 (lower is better)
Translates to: VFKCCDQLFESYNLQAPFAVTNY*RVIICR
Trigger: CCTGCAGATTATAACTCTCAAATAATTGGTCACAGC...AAATGGAGCCTGCAGATTATAACTCTCAAATAATTGGTCACAGCATTTGAAAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551647.5
CDS-3UTR CAA 90 bp CTTAGTTTAGATAATCAAGAGGTGACAGCTTCAGGTATCATCTTCACCAAGAATATGTTTAAACTTGCCTaGAGAACATGTACTGGCTAT +
Preference number: 5 (lower is better)
Translates to: LSLDNQEVTASGIIFTKNMFKLA*RTCTGY
Trigger: ATAGCCAGTACATGTTCTCAAGGCAAGTTTAAACAT...ATTCTTGGTGAAGATGATACCTGAAGCTGTCACCTCTTGATTATCTAAACTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000333003.10
CDS TCA 72 bp TGCTGCTCTGTAACAATCGGCGCTTTTGCGCCCTGCTaGCTCCGGCGTCGGGCGCCGACGCGACAGTCCCGC +
Preference number: 6 (lower is better)
Translates to: CCSVTIGAFAPC*LRRRAPTRQSR
Trigger: GCGGGACTGTCGCGTCGGCGCCCGACGCCGGAGTCAGCAGGGCGCAAAAGCGCCGATTGTTACAGAGCAGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548966.5
CDS CCA 72 bp GCCGACGCGACAGTCCCGCGGCTGCCACTCGTGGATTaGGGGGCGCTCCGGGAAGAGAGGTTGAAGAAAGCC +
Preference number: 6 (lower is better)
Translates to: ADATVPRLPLVD*GALREERLKKA
Trigger: GGCTTTCTTCAACCTCTCTTCCCGGAGCGCCCCCCAATCCACGAGTGGCAGCCGCGGGACTGTCGCGTCGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000546367.5
ENST00000548966.5
ENST00000549482.1
ENST00000551386.1
ENST00000552861.5
ENST00000622476.4
CDS GCA 72 bp GTCCGTCCCGTGAAAGCACGGGAGTTAGTGACGGGATaGAGGCCGGGACTTGCGGCCACTAGCCGAGGGTCG +
Preference number: 6 (lower is better)
Translates to: VRPVKARELVTG*RPGLAATSRGS
Trigger: CGACCCTCGGCTAGTGGCCGCAAGTCCCGGCCTGCATCCCGTCACTAACTCCCGTGCTTTCACGGGACGGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS TCA 72 bp CCTGCAGTGAGAACCCTGGGGCCGTTCCATTTCTTCTaGAAAGATCCAGGCCCACAGGCAGCGACGACCCTG +
Preference number: 6 (lower is better)
Translates to: PAVRTLGPFHFF*KDPGPQAATTL
Trigger: CAGGGTCGTCGCTGCCTGTGGGCCTGGATCTTTTCAGAAGAAATGGAACGGCCCCAGGGTTCTCACTGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS CCA 72 bp TCACGGCGGAGAGAGCTTTCTGTGTTTGGGTATTTCTaGGGGGTCAGAGTTCGTGACCTCTTTCTCGGCTCG +
Preference number: 6 (lower is better)
Translates to: SRRRELSVFGYF*GVRVRDLFLGS
Trigger: CGAGCCGAGAAAGAGGTCACGAACTCTGACCCCCCAGAAATACCCAAACACAGAAAGCTCTCTCCGCCGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333003.10
ENST00000393101.7
ENST00000551386.1
ENST00000622476.4
CDS TCA 72 bp CATAGGAGAAGGCATGGTGAGCCTGAAAGCTACATGTaGATCGCTGAGAAGTGGCCCCTCTTTTTCGGTGTA +
Preference number: 6 (lower is better)
Translates to: HRRRHGEPESYM*IAEKWPLFFGV
Trigger: TACACCGAAAAAGAGGGGCCACTTCTCAGCGATTCACATGTAGCTTTCAGGCTCACCATGCCTTCTCCTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000622476.4
CDS GCA 72 bp GGAGTTGTAAGGAAAACTTTTCCCGGAGTGGAATCTTaGCTGGCCAGAATGACTTTGCTTGGAGTAGAGCCG +
Preference number: 6 (lower is better)
Translates to: GVVRKTFPGVES*LARMTLLGVEP
Trigger: CGGCTCTACTCCAAGCAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTTTTCCTTACAACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS CCA 72 bp CGGAGTGGAATCTTGCCTGGCCAGAATGACTTTGCTTaGAGTAGAGCCGTCGTGATTTGTCAGAATGAACTG +
Preference number: 6 (lower is better)
Translates to: RSGILPGQNDFA*SRAVVICQNEL
Trigger: CAGTTCATTCTGACAAATCACGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAGGCAAGATTCCACTCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS CAA 90 bp TGCTGCATCTGGAGTTGTAAGGAAAACTTTTCCCGGAGTGGAATCTaGCCTGGCCAGAATGACTTTGCTTGGAGTAGAGCCGTCGTGATT +
Preference number: 6 (lower is better)
Translates to: CCIWSCKENFSRSGI*PGQNDFAWSRAVVI
Trigger: AATCACGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTTTTCCTTACAACTCCAGATGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS CAA 90 bp CTACTGAGCTCTGGCAGGCTGTGCTCTCTCCAGGATTCAATGCTTTaGCAAGAGTGTCAAATGCCCTGTATGAAGACATCAGAAGCTATG +
Preference number: 6 (lower is better)
Translates to: LLSSGRLCSLQDSML*QECQMPCMKTSEAM
Trigger: CATAGCTTCTGATGTCTTCATACAGGGCATTTGACACTCTTGCAAAAGCATTGAATCCTGGAGAGAGCACAGCCTGCCAGAGCTCAGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546416.5
CDS CAA 90 bp GCTTGGAGTAGAGCCGTCGTGATTTGTCAGAATGAACTGCTTGCCTaGGGTATTATGATCAAGTGCTGTCACAATCTGGATTTTCTGCCC +
Preference number: 6 (lower is better)
Translates to: AWSRAVVICQNELLA*GIMIKCCHNLDFLP
Trigger: GGGCAGAAAATCCAGATTGTGACAGCACTTGATCATAATACCCAAGGCAAGCAGTTCATTCTGACAAATCACGACGGCTCTACTCCAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS TCA 72 bp CTGGCCAGAATGACTTTGCTTGGAGTAGAGCCGTCGTaGTTTGTCAGAATGAACTGCTTGCCTTGGGTATTA +
Preference number: 6 (lower is better)
Translates to: LARMTLLGVEPS*FVRMNCLPWVL
Trigger: TAATACCCAAGGCAAGCAGTTCATTCTGACAAATCACGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS TCA 72 bp CCTCTTTTTCGGTGTAATTTATGCTTGAATCTCCAGTaGTTAGGTGTACACTTCCTTCCATGCCCGCTACTG +
Preference number: 6 (lower is better)
Translates to: PLFRCNLCLNLQ*LGVHFLPCPLL
Trigger: CAGTAGCGGGCATGGAAGGAAGTGTACACCTAATCACTGGAGATTCAAGCATAAATTACACCGAAAAAGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546416.5
ENST00000552861.5
ENST00000622476.4
CDS GCA 72 bp CAGAATGAACTGCTTGCCTTGGGTATTATGATCAAGTaGTGTCACAATCTGGATTTTCTGCCCAGTTTGCTG +
Preference number: 6 (lower is better)
Translates to: QNELLALGIMIK*CHNLDFLPSLL
Trigger: CAGCAAACTGGGCAGAAAATCCAGATTGTGACAGCACTTGATCATAATACCCAAGGCAAGCAGTTCATTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000546367.5
ENST00000548966.5
ENST00000551386.1
ENST00000552417.5
ENST00000552861.5
ENST00000622476.4
CDS CAA 90 bp CTGATGCTTTGTCTCCACATACTACGCAAAGATCAAAAACCTTATTaGGTCCTTGGTCTGGAGAATTATCTGTTAGGAGCTGCAGGTGTT +
Preference number: 6 (lower is better)
Translates to: LMLCLHILRKDQKPY*VLGLENYLLGAAGV
Trigger: AACACCTGCAGCTCCTAACAGATAATTCTCCAGACCAAGGACCAAATAAGGTTTTTGATCTTTGCGTAGTATGTGGAGACAAAGCATCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548966.5
ENST00000552861.5
ENST00000622476.4
CDS TCA 72 bp GATGTAACCACATTGGCCAATGTACTTAAATCTCCCTaGCATGATTCAGCCTTATCTGATGTCATCAGCACA +
Preference number: 6 (lower is better)
Translates to: DVTTLANVLKSP*HDSALSDVIST
Trigger: TGTGCTGATGACATCAGATAAGGCTGAATCATGTCAGGGAGATTTAAGTACATTGGCCAATGTGGTTACATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000547594.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS GCA 72 bp ATCAGTGATTGCTCGTCTTGTGAAATGAATGAGGGCTaGAATTACCTTGGCATCTTGTTGAAGACTATTGTG +
Preference number: 6 (lower is better)
Translates to: ISDCSSCEMNEG*NYLGILLKTIV
Trigger: CACAATAGTCTTCAACAAGATGCCAAGGTAATTGCAGCCCTCATTCATTTCACAAGACGAGCAATCACTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000330677.7
CDS CCA 72 bp ATAGGAGAAGGCATGGTGAGCTTGAAACATCACCGTTaGTCTGCATTTCTTGAAATTCACACAAAGAGGTAT +
Preference number: 6 (lower is better)
Translates to: IGEGMVSLKHHR*SAFLEIHTKRY
Trigger: ATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGCTCACCATGCCTTCTCCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS CCA 72 bp ATGGGACAACCTGGCAACATTCGTACTGCACAAAAATaGTATCTGCCCGAGTTGGAAGAATTATTTCTTAAC +
Preference number: 6 (lower is better)
Translates to: MGQPGNIRTAQK*YLPELEELFLN
Trigger: GTTAAGAAATAATTCTTCCAACTCGGGCAGATACCATTTTTGTGCAGTACGAATGTTGCCAGGTTGTCCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547469.1
CDS CAA 72 bp CTGTTGACCTTGTACTTTCACTATCTGTTACAAAAGTaGGAGTTGCAGTTAATGGGCTACGAAGGTCCTTTC +
Preference number: 6 (lower is better)
Translates to: LLTLYFHYLLQK*ELQLMGYEGPF
Trigger: GAAAGGACCTTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAACAGATAGTGAAAGTACAAGGTCAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS CAA 90 bp CTAACAGTCCTGTTGACCTTGTACTTTCACTATCTGTTACAAAAGTaGGAGTTGCAGTTAATGGGCTACGAAGGTCCTTTCGGATATAGA +
Preference number: 6 (lower is better)
Translates to: LTVLLTLYFHYLLQK*ELQLMGYEGPFGYR
Trigger: TCTATATCCGAAAGGACCTTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAACAGATAGTGAAAGTACAAGGTCAACAGGACTGTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS TCA 72 bp GGTGAGCTTGAAACATCACCGTTGGTCTGCATTTCTTaGAATTCACACAAAGAGGTATCATCATTGCTTAAG +
Preference number: 6 (lower is better)
Translates to: GELETSPLVCIS*NSHKEVSSLLK
Trigger: CTTAAGCAATGATGATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGCTCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552791.1
CDS CAA 72 bp TGTCTCCACATACTACGCAAAGATCAAAAACCTTATTaGGTCCTTGGTCTGGAGAATTATCTGTTAGGAGCT +
Preference number: 6 (lower is better)
Translates to: CLHILRKDQKPY*VLGLENYLLGA
Trigger: AGCTCCTAACAGATAATTCTCCAGACCAAGGACCAAATAAGGTTTTTGATCTTTGCGTAGTATGTGGAGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548966.5
ENST00000552861.5
ENST00000622476.4
CDS CAA 72 bp ACCTTGTACTTTCACTATCTGTTACAAAAGTTGGAGTaGCAGTTAATGGGCTACGAAGGTCCTTTCGGATAT +
Preference number: 6 (lower is better)
Translates to: TLYFHYLLQKLE*QLMGYEGPFGY
Trigger: ATATCCGAAAGGACCTTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAACAGATAGTGAAAGTACAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS CAA 90 bp CAAGAGTGTCAAATGCCCTGTATGAAGACATCAGAAGCTATGAGCTaGACCAAACACCGCAATAAAATAACAATTCTACATAGGATTCTG +
Preference number: 6 (lower is better)
Translates to: QECQMPCMKTSEAMS*TKHRNKITILHRIL
Trigger: CAGAATCCTATGTAGAATTGTTATTTTATTGCGGTGTTTGGTCAAGCTCATAGCTTCTGATGTCTTCATACAGGGCATTTGACACTCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546416.5
CDS TCA 72 bp CTGACTCAGTTTTTACTCCAGATGGATGAATATTCATaGACATTCCTGAATCTAACAGTCCTGTTGACCTTG +
Preference number: 6 (lower is better)
Translates to: LTQFLLQMDEYS*TFLNLTVLLTL
Trigger: CAAGGTCAACAGGACTGTTAGATTCAGGAATGTTCATGAATATTCATCCATCTGGAGTAAAAACTGAGTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000547594.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS TCA 72 bp AATGCCCTTGAAACATCACCGTTGGTCTGCATTTCTTaGAATTCACACAAAGAGGTATCATCATTGCTTAAG +
Preference number: 6 (lower is better)
Translates to: NALETSPLVCIS*NSHKEVSSLLK
Trigger: CTTAAGCAATGATGATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGGGCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000330677.7
ENST00000333003.10
ENST00000393101.7
ENST00000545833.5
ENST00000548252.1
ENST00000552861.5
ENST00000622476.4
CDS TCA 72 bp TCTTGCCTTGAAACATCACCGTTGGTCTGCATTTCTTaGAATTCACACAAAGAGGTATCATCATTGCTTAAG +
Preference number: 6 (lower is better)
Translates to: SCLETSPLVCIS*NSHKEVSSLLK
Trigger: CTTAAGCAATGATGATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGGCAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547594.5
CDS TCA 72 bp CTGCTGAGTCATATGATAACTCCATGTTTAACCTTTTaGAGAACTACTGAACTCTTTTCCCAGGTAACTGCA +
Preference number: 6 (lower is better)
Translates to: LLSHMITPCLTF*RTTELFSQVTA
Trigger: TGCAGTTACCTGGGAAAAGAGTTCAGTAGTTCTTCAAAAGGTTAAACATGGAGTTATCATATGACTCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000552484.1
CDS CCA 72 bp GTGATATGCTGTTTTCTTGCCTTGAAACATCACCGTTaGTCTGCATTTCTTGAAATTCACACAAAGAGGTAT +
Preference number: 6 (lower is better)
Translates to: VICCFLALKHHR*SAFLEIHTKRY
Trigger: ATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGGCAAGAAAACAGCATATCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547594.5
CDS TCA 72 bp ACTAGACATACCTCTCCCATCTGTTGTTCAATAATTTaGTGTGCAATTTCTTCTATGGTTGCCATGATCTAC +
Preference number: 6 (lower is better)
Translates to: TRHTSPICCSII*CAISSMVAMIY
Trigger: GTAGATCATGGCAACCATAGAAGAAATTGCACATCAAATTATTGAACAACAGATGGGAGAGGTATGTCTAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000549482.1
CDS GCA 72 bp CTGCTCTGTAACAATCTTTTAAACTACCGATTCTATTaGCACAAAATTCTATCCTCTCCCATCTGTTGTTCA +
Preference number: 6 (lower is better)
Translates to: LLCNNLLNYRFY*HKILSSPICCS
Trigger: TGAACAACAGATGGGAGAGGATAGAATTTTGTGGCAATAGAATCGGTAGTTTAAAAGATTGTTACAGAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000551386.1
ENST00000552417.5