RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NR1H4 (Homo sapiens)

Ensembl gene IDs: ENSG00000012504

Ensembl transcript IDs: ENST00000188403.7, ENST00000321046.9, ENST00000392986.8, ENST00000546380.1, ENST00000548621.2, ENST00000548884.5, ENST00000549996.5, ENST00000551379.5, ENST00000648861.1, ENST00000649582.1

Found 351 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTCGTTTACTCTCCATGACATCAGCATCTCAGCGTGGTGATGATTaGATGTCCGTAATTCAGTCAGGCGACCCAGGAGACAGGCAAAGT +
Preference number: 1 (lower is better)
Translates to: GRLLSMTSASQRGDD*MSVIQSGDPGDRQS
Trigger: ACTTTGCCTGTCTCCTGGGTCGCCTGACTGAATTACGGACATTCAATCATCACCACGCTGAGATGCTGATGTCATGGAGAGTAAACGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR TCA 90 bp AGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTGCATACTCTaGATTTGTGAATCCTGCCTCAAGACTAACTATGGGGGAAAGGAT +
Preference number: 1 (lower is better)
Translates to: REESEGPITAVSCIL*ICESCLKTNYGGKD
Trigger: ATCCTTTCCCCCATAGTTAGTCTTGAGGCAGGATTCACAAATTCAGAGTATGCAGCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR TCA 90 bp ATAATAGGGAGAAGAATGCAACAGTGTAACAATGAAGGAAGGAAATaGACTAATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCC +
Preference number: 1 (lower is better)
Translates to: IIGRRMQQCNNEGRK*TNSCFGGSIQQLCS
Trigger: GGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAATTAGTTCATTTCCTTCCTTCATTGTTACACTGTTGCATTCTTCTCCCTATTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR GCA 90 bp TCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATaGCCAGACGGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGG +
Preference number: 1 (lower is better)
Translates to: SEIPLFRILSSNRSE*PDGSFLLKISAERR
Trigger: CCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR GCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGCTTGCCAATTAGAATaGAGGATTCCCTGGAGCCTT +
Preference number: 2 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVACQLE*RIPWSL
Trigger: AAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGACAAGAACCTGTACATaGTTGGTTGCCATTTCCGTC +
Preference number: 2 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWTRTCT*LVAISV
Trigger: GACGGAAATGGCAACCAATCATGTACAGGTTCTTGT...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR GCA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGCTGAAGCTTCTCTACTaGCTCTCTATCCTTTATGTA +
Preference number: 2 (lower is better)
Translates to: FSQATQETGKVLRIFRLVLKLLY*LSILYV
Trigger: TACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAG...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGAGGGCTATTACAAATaGATGACTATTCACCAGGAC +
Preference number: 2 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVEGYYK*MTIHQD
Trigger: GTCCTGGTGAATAGTCATTCATTTGTAATAGCCCTC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR GCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCCAATAGGTCAGAATaGCCAGACGGAAGTTTCTTA +
Preference number: 2 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWSNRSE*PDGSFL
Trigger: TAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGA...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR GCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGCTTGCCAATTAGAATaGAGGATTCCCTGGAGCCTT +
Preference number: 2 (lower is better)
Translates to: IISSLLREESEGPITAVSACQLE*RIPWSL
Trigger: AAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTTTCATCAAGATTTCTTaGGTGAAACTGGGTACAAGT +
Preference number: 2 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVFIKIS*VKLGTS
Trigger: ACTTGTACCCAGTTTCACTCAAGAAATCTTGATGAA...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGAGGGCTATTACAAATaGATGACTATTCACCAGGAC +
Preference number: 2 (lower is better)
Translates to: IISSLLREESEGPITAVSEGYYK*MTIHQD
Trigger: GTCCTGGTGAATAGTCATTCATTTGTAATAGCCCTC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACCAAATAGAGTACTTGTaGTGTGCCAGGCATTCTTCT +
Preference number: 2 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDQIEYL*CARHSS
Trigger: AGAAGAATGCCTGGCACATCACAAGTACTCTATTTG...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
3UTR CAA 90 bp ATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATaGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACCGCAGAC +
Preference number: 2 (lower is better)
Translates to: ILSSNRSECPDGSFL*KISAERRNIASTAD
Trigger: GTCTGCGGTTGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR CCA 90 bp GCTCCTGAAGCTTCTCTACTGCCTCTCTATCCTTTATGTATTGTCTATCTGGAGGAACCTGTACATGATTaGTTGCCATTTCCGTCAAAA +
Preference number: 2 (lower is better)
Translates to: APEASLLPLYPLCIVYLEEPVHD*LPFPSK
Trigger: TTTTGACGGAAATGGCAACCAATCATGTACAGGTTC...CTCCAGATAGACAATACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAGGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTCAAGATTTCTTGAGTaGAACTGGGTACAAGTGAAA +
Preference number: 2 (lower is better)
Translates to: IISSLLREESEGPITAVSSRFLE*NWVQVK
Trigger: TTTCACTTGTACCCAGTTTCACTCAAGAAATCTTGA...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACGCCTATCAAAGAGTATaGGAATTAGGATTCCTTTGT +
Preference number: 2 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDAYQRV*ELGFLC
Trigger: ACAAAGGAATCCTAATTCTCATACTCTTTGATAGGC...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
3UTR-3UTR CCA 90 bp CCAGACGGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCATTCAGCAAAGCAATCTaGTCTTCATGGTCCAAAGTC +
Preference number: 2 (lower is better)
Translates to: PDGSFLLKISAERRNIASFSKAI*SSWSKV
Trigger: GACTTTGGACCATGAAGACCAGATTGCTTTGCTGAA...TGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR TCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGTCAAGATTTCTTGAGTaGAACTGGGTACAAGTGAAA +
Preference number: 2 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLSRFLE*NWVQVK
Trigger: TTTCACTTGTACCCAGTTTCACTCAAGAAATCTTGA...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp CATCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATTaGAAATCTCAGCTGAACGAA +
Preference number: 2 (lower is better)
Translates to: HQRYHYFEFFLPIGQNAQTEVSY*KSQLNE
Trigger: TTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGT...CTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR CCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTGAATGCAGGATTCCCTaGAGCCTTTTAAAACACAAT +
Preference number: 2 (lower is better)
Translates to: LDTMKPIISSLLREESEGECRIP*SLLKHN
Trigger: ATTGTGTTTTAAAAGGCTCCAGGGAATCCTGCATTC...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR GCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTATGGGGGAAAGGATTaGTTGAGGGAATATTTTATG +
Preference number: 2 (lower is better)
Translates to: LDTMKPIISSLLREESEGYGGKD*LREYFM
Trigger: CATAAAATATTCCCTCAAGCAATCCTTTCCCCCATA...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCAAGATTTCTTGAGTaGAACTGGGTACAAGTGAAA +
Preference number: 2 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSRFLE*NWVQVK
Trigger: TTTCACTTGTACCCAGTTTCACTCAAGAAATCTTGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
3UTR-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAATTCATCAAGATTTCTTaGGTGAAACTGGGTACAAGT +
Preference number: 2 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEFIKIS*VKLGTS
Trigger: ACTTGTACCCAGTTTCACTCAAGAAATCTTGATGAA...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR TCA 72 bp CTCTCCATGACATCAGCATCTCAGCGTGGTGATGATTaGATGTCCGTAATTCAGTCAGGCGACCCAGGAGAC +
Preference number: 3 (lower is better)
Translates to: LSMTSASQRGDD*MSVIQSGDPGD
Trigger: GTCTCCTGGGTCGCCTGACTGAATTACGGACATTCAATCATCACCACGCTGAGATGCTGATGTCATGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR CCA 72 bp ACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTaGTCGTTTACTCTCCATGACATCAGCATCTCAGCG +
Preference number: 3 (lower is better)
Translates to: TSQISQRSGVNL*SFTLHDISISA
Trigger: CGCTGAGATGCTGATGTCATGGAGAGTAAACGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR CAA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGTCTATCCTTTATGTATaGTCTATCTGGAGACAGGAT +
Preference number: 3 (lower is better)
Translates to: FSQATQETGKVLRIFRLVSILYV*SIWRQD
Trigger: ATCCTGTCTCCAGATAGACAATACATAAAGGATAGA...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR TCA 72 bp AGCGAAGGTCCCATCACTGCAGTTAGCTGCATACTCTaGATTTGTGAATCCTGCCTCAAGACTAACTATGGG +
Preference number: 3 (lower is better)
Translates to: SEGPITAVSCIL*ICESCLKTNYG
Trigger: CCCATAGTTAGTCTTGAGGCAGGATTCACAAATTCAGAGTATGCAGCTAACTGCAGTGATGGGACCTTCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR TCA 72 bp GAGAAGTGGGGTAAACTTGTGGTCGTTTACTCTCCATaGCATCAGCATCTCAGCGTGGTGATGATTGAATGT +
Preference number: 3 (lower is better)
Translates to: EKWGKLVVVYSP*HQHLSVVMIEC
Trigger: ACATTCAATCATCACCACGCTGAGATGCTGATGTCATGGAGAGTAAACGACCACAAGTTTACCCCACTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR CAA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTTAGGCAAACAGGGCTaGCCAATTAGAATGCAGGAT +
Preference number: 3 (lower is better)
Translates to: IISSLLREESEGPITAVSLGKQG*PIRMQD
Trigger: ATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR TCA 72 bp ATGCCCAGACGGAAGTTTCTTATTGAAAATCTCAGCTaGACGAAGGAACATAGCTTCAACCGCAGACCCTTT +
Preference number: 3 (lower is better)
Translates to: MPRRKFLIENLS*TKEHSFNRRPF
Trigger: AAAGGGTCTGCGGTTGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR CAA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCCTATGGGGGAAAGGATaGCTTGAGGGAATATTTTAT +
Preference number: 3 (lower is better)
Translates to: IISSLLREESEGPITAVSLWGKG*LEGIFY
Trigger: ATAAAATATTCCCTCAAGCAATCCTTTCCCCCATAG...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR TCA 72 bp TTACACAACTTTTGTAGCACATCAAGAAGTGGCTCCTaGAGCTTCTCTACTGCCTCTCTATCCTTTATGTAT +
Preference number: 3 (lower is better)
Translates to: LHNFCSTSRSGS*SFSTASLSFMY
Trigger: ATACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAGGAGCCACTTCTTGATGTGCTACAAAAGTTGTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAATTAGGCAAACAGGGCTaGCCAATTAGAATGCAGGAT +
Preference number: 3 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIELGKQG*PIRMQD
Trigger: ATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
3UTR GCA 72 bp CCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATaGCCAGACGGAAGTTTCTTATTGAAAATCTCAGCT +
Preference number: 3 (lower is better)
Translates to: PLFRILSSNRSE*PDGSFLLKISA
Trigger: AGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
3UTR TCA 72 bp AGAAAAGGAAATGATCAGAGGGCTATTACAAATGAATaGCTATTCACCAGGACTTTTCCAGAGATGACAAAA +
Preference number: 3 (lower is better)
Translates to: RKGNDQRAITNE*LFTRTFPEMTK
Trigger: TTTTGTCATCTCTGGAAAAGTCCTGGTGAATAGTCATTCATTTGTAATAGCCCTCTGATCATTTCCTTTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGCTGCTGACGCGCCCATaGGGGGCTTCTTTGTTACAG +
Preference number: 4 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSLLTRP*GASLLQ
Trigger: CTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAG...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCTGCTGACGCGCCCATaGGGGGCTTCTTTGTTACAG +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVLLTRP*GASLLQ
Trigger: CTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATTTGATCCTCCCTGCTaGCGCGCCCATGCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKFDPPC*RAHAGL
Trigger: AAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAAA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTTTGATCCTCCCTGCTaGCGCGCCCATGCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSFDPPC*RAHAGL
Trigger: AAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAAA...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp GTAATTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGGAGGATTCTGGACTaGGTCTTCCTCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: VIQSGDPGDRQSVEDFQAGRILD*VFLSRS
Trigger: GGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCC...AGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAATTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp CCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGTTGCCCTGGGAGGATTCTaGACTGAGTCTTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: PSLHVPDFTEKWGKLVVVALGGF*TESSSP
Trigger: TGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGC...AACGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGCCCTGGGAGGATTCTaGACTGAGTCTTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVALGGF*TESSSP
Trigger: TGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSVLGQR*TFKALG
Trigger: TCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAAC...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGT +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVGLSRP*EDSGLS
Trigger: ACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp GGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACCGCATTTGATCCTCCCTGCTaGCGCGCCCATGCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: GSFLLKISAERRNIASTAFDPPC*RAHAGL
Trigger: AAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAAA...TGCGGTTGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGAGAGCATACTCCTCTTaGGTCATTTTCAGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSRAYSS*VIFSSP
Trigger: TGGGGAACTGAAAATGACTCAAGAGGAGTATGCTCT...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACTGCTGACGCGCCCATaGGGGGCTTCTTTGTTACAG +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKLLTRP*GASLLQ
Trigger: CTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGGTTTTCTCCTACACCTaGATGACTTTGTTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: FSQATQETGKVLRIFRLVVFSYT*MTLLSR
Trigger: CCTCGACAACAAAGTCATGCAGGTGTAGGAGAAAAC...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGGGTAGAAACCCAGGTTaGAATAATAGGATGACGAGG +
Preference number: 4 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSGRNPG*NNRMTR
Trigger: CCTCGTCATCCTATTATTCCAACCTGGGTTTCTACC...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCATAGAAAGGAACCTTaGGAGAGCCTCGAGATTCCC +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVHRKEP*ESLEIP
Trigger: GGGAATCTCGAGGCTCTCCCAAGGTTCCTTTCTATG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000548884.5
CDS-3UTR TCA 90 bp TCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATTGAAAATCTCAGCTACAGCTCATCCCCTTTaGTCCTCCCTGCTGACGCGC +
Preference number: 4 (lower is better)
Translates to: SSNRSECPDGSFLLKISATAHPL*SSLLTR
Trigger: GCGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGT...AGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp GTAATTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTTCTTCATTCACGGTCTaGTCTGCATGCTGCTTCACA +
Preference number: 4 (lower is better)
Translates to: VIQSGDPGDRQSVEDFQASSFTV*SACCFT
Trigger: TGTGAAGCAGCATGCAGATCAGACCGTGAATGAAGA...AGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAATTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGGGAGGATTCTGGACTaGGTCTTCCTCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKGRILD*VFLSRS
Trigger: GGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACGACTCCAGGGGAGTCTaGGAAGCCCTTATAGGTGTG +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDDSRGV*EALIGV
Trigger: CACACCTATAAGGGCTTCTCAGACTCCCCTGGAGTC...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR GCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTGTTACAGGCATCTCTaGTACCTCAGTTTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWCYRHL*YLSFSL
Trigger: CAGGGAGAAACTGAGGTAGCAGAGATGCCTGTAACA...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTTGTAATCCCCATCACTaGACGTCCCAGATTTCACAG +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVCNPHH*TSQISQ
Trigger: CTGTGAAATCTGGGACGTGCAGTGATGGGGATTACA...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGTAGAGAGTCTCAGCTaGCATACGCCTGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVVESLS*HTPEFI
Trigger: TATGAACTCAGGCGTATGCCAGCTGAGACTCTCTAC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGAAGAGTCTGTTGATCTaGGGTGAGTTCAGTTTTCTC +
Preference number: 4 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSKSLLI*GEFSFL
Trigger: GAGAAAACTGAACTCACCCCAGATCAACAGACTCTT...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGTTCAGCAAAGCAATCTaGTCTTCATGGTCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: FSQATQETGKVLRIFRLVFSKAI*SSWSKV
Trigger: GACTTTGGACCATGAAGACCAGATTGCTTTGCTGAA...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGGATTTCACAGAGAAGTaGGGTAAACTTGTGGTCGTT +
Preference number: 4 (lower is better)
Translates to: FSQATQETGKVLRIFRLVDFTEK*GKLVVV
Trigger: AACGACCACAAGTTTACCCCACTTCTCTGTGAAATC...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTACAGCTCATCCCCTTTaGTCCTCCCTGCTGACGCGC +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGTAHPL*SSLLTR
Trigger: GCGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGT...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCTTAGTCGACACTCTTaGCACTTTCTTCGCATGTAC +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVLSRHS*HFLRMY
Trigger: GTACATGCGAAGAAAGTGTCAAGAGTGTCGACTAAG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGCAGCGTGGTGATGATTaGATGTCCGTAATTCAGTCA +
Preference number: 4 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWQRGDD*MSVIQS
Trigger: TGACTGAATTACGGACATTCAATCATCACCACGCTG...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCAGCGTGGTGATGATTaGATGTCCGTAATTCAGTCA +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVQRGDD*MSVIQS
Trigger: TGACTGAATTACGGACATTCAATCATCACCACGCTG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGGGGAGGATTCTGGACTaGGTCTTCCTCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLGRILD*VFLSRS
Trigger: GGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCC...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp GTAATTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTTCTGTTGATCTGGGGTaGGTTCAGTTTTCTCCTACA +
Preference number: 4 (lower is better)
Translates to: VIQSGDPGDRQSVEDFQASVDLG*VQFSPT
Trigger: TGTAGGAGAAAACTGAACTCACCCCAGATCAACAGA...AGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAATTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGTTAGCTGCATACTCTaGATTTGTGAATCCTGCCTC +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVVSCIL*ICESCL
Trigger: GAGGCAGGATTCACAAATTCAGAGTATGCAGCTAAC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGGCTGCAGTGAACTCTaGTCATGCCACTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKGCSEL*SCHCIP
Trigger: TGGAATGCAGTGGCATGATCAGAGTTCACTGCAGCC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR GCA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGATTCACGGTCTGATCTaGATGCTGCTTCACATTTTT +
Preference number: 4 (lower is better)
Translates to: FSQATQETGKVLRIFRLVIHGLI*MLLHIF
Trigger: AAAAATGTGAAGCAGCATGCAGATCAGACCGTGAAT...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGTTCAGTTTTCTCCCTaGATGACTTTGTTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVVQFSP*MTLLSR
Trigger: CCTCGACAACAAAGTCATGCAGGGAGAAAACTGAAC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKGLSRP*EDSGLS
Trigger: ACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGCAGCATCTCTTCCTTaGCTCTGTGCCTCATGGACA +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSAASLP*LCASWT
Trigger: TGTCCATGAGGCACAGAGCCAAGGAAGAGATGCTGC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548884.5
CDS-3UTR TCA 90 bp CCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGTTGTTGGAATAATAGGATaGCGAGGAAATCTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: PSLHVPDFTEKWGKLVVVVGIIG*RGNLWL
Trigger: CAACCACAGATTTCCTCGTCATCCTATTATTCCAAC...AACGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp GCTCCTGAAGCTTCTCTACTGCCTCTCTATCCTTTATGTATTGTCTATCTGGAGCAGCTGGCATACGCCTaGGTTCATATATTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: APEASLLPLYPLCIVYLEQLAYA*VHIFQE
Trigger: CTCCTGGAATATATGAACTCAGGCGTATGCCAGCTG...CTCCAGATAGACAATACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAGGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTTTGATCCTCCCTGCTaGCGCGCCCATGCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVFDPPC*RAHAGL
Trigger: AAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAAA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp GCTCCTGAAGCTTCTCTACTGCCTCTCTATCCTTTATGTATTGTCTATCTGGAGTCAAGAAGTGGCTCCTaGAGCTTCTCTACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: APEASLLPLYPLCIVYLESRSGS*SFSTAS
Trigger: AGAGGCAGTAGAGAAGCTTCAGGAGCCACTTCTTGA...CTCCAGATAGACAATACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAGGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTCAAGAAGTGGCTCCTaGAGCTTCTCTACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSSRSGS*SFSTAS
Trigger: AGAGGCAGTAGAGAAGCTTCAGGAGCCACTTCTTGA...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATCAAGAAGTGGCTCCTaGAGCTTCTCTACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSRSGS*SFSTAS
Trigger: AGAGGCAGTAGAGAAGCTTCAGGAGCCACTTCTTGA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGTCGTTTACTCTCCATaGCATCAGCATCTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSVVYSP*HQHLSV
Trigger: CACGCTGAGATGCTGATGTCATGGAGAGTAAACGAC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGTCGTTTACTCTCCATaGCATCAGCATCTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKVVYSP*HQHLSV
Trigger: CACGCTGAGATGCTGATGTCATGGAGAGTAAACGAC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGAAACTCCAAAGTGTCTaGAGTTTCATCTTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSKLQSV*SFILRK
Trigger: TTTCCTCAAGATGAAACTTCAGACACTTTGGAGTTT...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp CCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGTTGGGGAAACTGAACATTaGTGTATTGCGAGTATGGTT +
Preference number: 4 (lower is better)
Translates to: PSLHVPDFTEKWGKLVVVGETEH*CIASMV
Trigger: AACCATACTCGCAATACAGCAATGTTCAGTTTCCCC...AACGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGCTGCTGACGCGCCCATaGGGGGCTTCTTTGTTACAG +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRLLTRP*GASLLQ
Trigger: CTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAG...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDVLGQR*TFKALG
Trigger: TCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAAC...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACATGAGAACACATGGATaGACTCCAGGGGAGTCTGAG +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDMRTHG*TPGESE
Trigger: CTCAGACTCCCCTGGAGTCCATCCATGTGTTCTCAT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
3UTR CAA 72 bp TGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTaGTGGTCGTTTACTCTCCATGACATCAGCATCTCA +
Preference number: 4 (lower is better)
Translates to: CTSQISQRSGVN*WSFTLHDISIS
Trigger: TGAGATGCTGATGTCATGGAGAGTAAACGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAACAGCTCATCCCCTTTaGTCCTCCCTGCTGACGCGC +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIETAHPL*SSLLTR
Trigger: GCGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTACAGCTCATCCCCTTTaGTCCTCCCTGCTGACGCGC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVTAHPL*SSLLTR
Trigger: GCGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATCTTCATTCACGGTCTaGTCTGCATGCTGCTTCACA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSSFTV*SACCFT
Trigger: TGTGAAGCAGCATGCAGATCAGACCGTGAATGAAGA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAGTTTTCTCCCTGCATaGCTTTGTTGTCGAGGTCAC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSFLPA*LCCRGH
Trigger: GTGACCTCGACAACAAAGTCATGCAGGGAGAAAACT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGATTGAAAATCTCAGCTaGACGAAGGAACATAGCTTC +
Preference number: 4 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWIENLS*TKEHSF
Trigger: GAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAAT...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGGATTTTCAGGCTGGTaGATCTTACACAACTTTTGT +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVGFSGW*ILHNFC
Trigger: ACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGAGACAGGATAACAATTaGTGTAAGCAGAGCATACTC +
Preference number: 4 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWRQDNN*CKQSIL
Trigger: GAGTATGCTCTGCTTACAGCAATTGTTATCCTGTCT...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCTGAAGCTTCTCTACTaGCTCTCTATCCTTTATGTA +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVLKLLY*LSILYV
Trigger: TACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp GCTCCTGAAGCTTCTCTACTGCCTCTCTATCCTTTATGTATTGTCTATCTGGAGTGTAATCCCCATCACTaGACGTCCCAGATTTCACAG +
Preference number: 4 (lower is better)
Translates to: APEASLLPLYPLCIVYLECNPHH*TSQISQ
Trigger: CTGTGAAATCTGGGACGTGCAGTGATGGGGATTACA...CTCCAGATAGACAATACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGCTTGCCAATTAGAATaGAGGATTCCCTGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKACQLE*RIPWSL
Trigger: AAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGCTGTATTGCGAGTATaGTTCCACTTCCAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSAVLRV*FHFQVL
Trigger: CAGAACCTGGAAGTGGAACCATACTCGCAATACAGC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGCTGTATTGCGAGTATaGTTCCACTTCCAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKAVLRV*FHFQVL
Trigger: CAGAACCTGGAAGTGGAACCATACTCGCAATACAGC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGTAGAGAGTCTCAGCTaGCATACGCCTGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKVESLS*HTPEFI
Trigger: TATGAACTCAGGCGTATGCCAGCTGAGACTCTCTAC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGTATGTATTGTCTATCTaGAGACAGGATAACAATTGC +
Preference number: 4 (lower is better)
Translates to: FSQATQETGKVLRIFRLVYVLSI*RQDNNC
Trigger: GCAATTGTTATCCTGTCTCCAGATAGACAATACATA...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGGCCCTGGGAGGATTCTaGACTGAGTCTTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRALGGF*TESSSP
Trigger: TGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGC...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATTGAAAATCTCAGCTGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGT +
Preference number: 4 (lower is better)
Translates to: SSNRSECPDGSFLLKISAGLSRP*EDSGLS
Trigger: ACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCC...AGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLVLGQR*TFKALG
Trigger: TCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAAC...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACTGTGACGGTTCTCCATaGAAGTTTAGGGACGAGTTC +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDCDGSP*KFRDEF
Trigger: GAACTCGTCCCTAAACTTCCATGGAGAACCGTCACA...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR TCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGTCTTCATTCACGGTCTaGTCTGCATGCTGCTTCACA +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLSSFTV*SACCFT
Trigger: TGTGAAGCAGCATGCAGATCAGACCGTGAATGAAGA...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATGTAGAAGAGTCTGTTaGTCTGGGGTGAGTTCAGTT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKCRRVC*SGVSSV
Trigger: AACTGAACTCACCCCAGATCAACAGACTCTTCTACA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCACAAGAACCTGTACATaGTTGGTTGCCATTTCCGTC +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSTRTCT*LVAISV
Trigger: GACGGAAATGGCAACCAATCATGTACAGGTTCTTGT...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACAGCGTGGTGATGATTaGATGTCCGTAATTCAGTCA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKQRGDD*MSVIQS
Trigger: TGACTGAATTACGGACATTCAATCATCACCACGCTG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp CATCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGGTCGTTTACTCTCCATaGCATCAGCATCTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: HQRYHYFEFFLPIGQNAQVVYSP*HQHLSV
Trigger: CACGCTGAGATGCTGATGTCATGGAGAGTAAACGAC...CTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTTCAAGATTTCTTGAGTaGAACTGGGTACAAGTGAAA +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVSRFLE*NWVQVK
Trigger: TTTCACTTGTACCCAGTTTCACTCAAGAAATCTTGA...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGTTAAGCAGTGTTCACTTTaGGCTATGTTTCTAAGTCTT +
Preference number: 4 (lower is better)
Translates to: PSLHVPDFTEKWGKLVVVKQCSL*AMFLSL
Trigger: AAGACTTAGAAACATAGCTCAAAGTGAACACTGCTT...AACGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTAAGCAGTGTTCACTTTaGGCTATGTTTCTAAGTCTT +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVKQCSL*AMFLSL
Trigger: AAGACTTAGAAACATAGCTCAAAGTGAACACTGCTT...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCTGAAGTTTCATCTTaGGGAAATGTCCAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWSEVSS*GNVQKK
Trigger: TTTCTTCTGGACATTTCCTCAAGATGAAACTTCAGA...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp CATCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGTCTCCTACACCTGCATaGCTTTGTTGTCGAGGTCAC +
Preference number: 4 (lower is better)
Translates to: HQRYHYFEFFLPIGQNAQSPTPA*LCCRGH
Trigger: GTGACCTCGACAACAAAGTCATGCAGGTGTAGGAGA...CTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCCAGTGTACTGTGCATaGTCACAGGCGGCCTTCTGG +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVPVYCA*SQAAFW
Trigger: CCAGAAGGCCGCCTGTGATCATGCACAGTACACTGG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548884.5
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGTTCAGTTTTCTCCCTaGATGACTTTGTTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKVQFSP*MTLLSR
Trigger: CCTCGACAACAAAGTCATGCAGGGAGAAAACTGAAC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGGCTTGCCAATTAGAATaGAGGATTCCCTGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLACQLE*RIPWSL
Trigger: AAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGC...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTTATGGGGGAAAGGATTaGTTGAGGGAATATTTTATG +
Preference number: 4 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVYGGKD*LREYFM
Trigger: CATAAAATATTCCCTCAAGCAATCCTTTCCCCCATA...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGGTAGAGAGTCTCAGCTaGCATACGCCTGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLVESLS*HTPEFI
Trigger: TATGAACTCAGGCGTATGCCAGCTGAGACTCTCTAC...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAGTGGGGTAAACTTGTaGTCGTTTACTCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSGVNL*SFTLHD
Trigger: GTCATGGAGAGTAAACGACCACAAGTTTACCCCACT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACTTAAATGAGAACACATaGATGGACTCCAGGGGAGTC +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDLNENT*MDSRGV
Trigger: GACTCCCCTGGAGTCCATCCATGTGTTCTCATTTAA...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCACAGGCGGCCTTCTaGGCTAGCAGCAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSQAAF*ASSSIS
Trigger: AGAGATGCTGCTGCTAGCCCAGAAGGCCGCCTGTGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548884.5
CDS-3UTR TCA 90 bp CCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCCTTAGTCGACACTCTTaGCACTTTCTTCGCATGTAC +
Preference number: 4 (lower is better)
Translates to: PLFRILSSNRSECPDGSFLSRHS*HFLRMY
Trigger: GTACATGCGAAGAAAGTGTCAAGAGTGTCGACTAAG...GAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCTGTTGATCTGGGGTaGGTTCAGTTTTCTCCCTGC +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRSVDLG*VQFSPC
Trigger: GCAGGGAGAAAACTGAACTCACCCCAGATCAACAGA...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTGTCGTTTACTCTCCATaGCATCAGCATCTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGVVYSP*HQHLSV
Trigger: CACGCTGAGATGCTGATGTCATGGAGAGTAAACGAC...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGGGAGGATTCTGGACTaGGTCTTCCTCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVGRILD*VFLSRS
Trigger: GGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACATTAGGATTCCTTTGTaGCGGTTCTCCATGGAAGTT +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDIRIPL*RFSMEV
Trigger: AACTTCCATGGAGAACCGTCACAAAGGAATCCTAAT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR GCA 90 bp GCTCCTGAAGCTTCTCTACTGCCTCTCTATCCTTTATGTATTGTCTATCTGGAGTATCCATCACACAGTTaGCCCCGTTTTTACACTTGT +
Preference number: 4 (lower is better)
Translates to: APEASLLPLYPLCIVYLEYPSHS*PRFYTC
Trigger: ACAAGTGTAAAAACGGGGGCAACTGTGTGATGGATA...CTCCAGATAGACAATACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAGGAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATATCCATCACACAGTTaGCCCCGTTTTTACACTTGT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKYPSHS*PRFYTC
Trigger: ACAAGTGTAAAAACGGGGGCAACTGTGTGATGGATA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTCCAATAGGTCAGAATaGCCAGACGGAAGTTTCTTA +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSSNRSE*PDGSFL
Trigger: TAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGA...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp CATCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGGCTGTATTGCGAGTATaGTTCCACTTCCAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: HQRYHYFEFFLPIGQNAQAVLRV*FHFQVL
Trigger: CAGAACCTGGAAGTGGAACCATACTCGCAATACAGC...CTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp GACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGAATCTTACACAACTTTTGTAGTAGAGAGTCTCAGCTaGCATACGCCTGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: DRQSVEDFQAGESYTTFVVESLS*HTPEFI
Trigger: TATGAACTCAGGCGTATGCCAGCTGAGACTCTCTAC...TACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCCTCAACACTTTGCCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAAGAGTCTGTTGATCTaGGGTGAGTTCAGTTTTCTC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKKSLLI*GEFSFL
Trigger: GAGAAAACTGAACTCACCCCAGATCAACAGACTCTT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATTCAGCAAAGCAATCTaGTCTTCATGGTCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKFSKAI*SSWSKV
Trigger: GACTTTGGACCATGAAGACCAGATTGCTTTGCTGAA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGAGTGGGGTAAACTTGTaGTCGTTTACTCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLSGVNL*SFTLHD
Trigger: GTCATGGAGAGTAAACGACCACAAGTTTACCCCACT...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGATTTCACAGAGAAGTaGGGTAAACTTGTGGTCGTT +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSDFTEK*GKLVVV
Trigger: AACGACCACAAGTTTACCCCACTTCTCTGTGAAATC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGATTTCACAGAGAAGTaGGGTAAACTTGTGGTCGTT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKDFTEK*GKLVVV
Trigger: AACGACCACAAGTTTACCCCACTTCTCTGTGAAATC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGCCCTGGGAGGATTCTaGACTGAGTCTTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVALGGF*TESSSP
Trigger: TGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRVLGQR*TFKALG
Trigger: TCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAAC...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATGTCTTCTACCTCCTTaGATTGTTTTGGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKCLLPP*IVLGQR
Trigger: TCTCTGACCCAAAACAATCCAAGGAGGTAGAAGACA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACTGTCTTCTACCTCCTTaGATTGTTTTGGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDCLLPP*IVLGQR
Trigger: TCTCTGACCCAAAACAATCCAAGGAGGTAGAAGACA...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR TCA 90 bp TCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACTGTAGAAGAGTCTGTTaGTCTGGGGTGAGTTCAGTT +
Preference number: 4 (lower is better)
Translates to: SEIPLFRILSSNRSECPDCRRVC*SGVSSV
Trigger: AACTGAACTCACCCCAGATCAACAGACTCTTCTACA...GTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATTGAAAATCTCAGCTACAAGAACCTGTACATaGTTGGTTGCCATTTCCGTC +
Preference number: 4 (lower is better)
Translates to: SSNRSECPDGSFLLKISATRTCT*LVAISV
Trigger: GACGGAAATGGCAACCAATCATGTACAGGTTCTTGT...AGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCATTGAAAATCTCAGCTaGACGAAGGAACATAGCTTC +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSIENLS*TKEHSF
Trigger: GAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAAT...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGGATTTTCAGGCTGGTaGATCTTACACAACTTTTGT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKGFSGW*ILHNFC
Trigger: ACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGGGGGAAACTGAACATTaGTGTATTGCGAGTATGGTT +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLGETEH*CIASMV
Trigger: AACCATACTCGCAATACAGCAATGTTCAGTTTCCCC...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAACATTCCCATCTCTTTaGATTTCCTTAGTCGACACT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKTFPSL*ISLVDT
Trigger: AGTGTCGACTAAGGAAATGCAAAGAGATGGGAATGT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAGACAGGATAACAATTaGTGTAAGCAGAGCATACTC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKRQDNN*CKQSIL
Trigger: GAGTATGCTCTGCTTACAGCAATTGTTATCCTGTCT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACTGAAGCTTCTCTACTaGCTCTCTATCCTTTATGTA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKLKLLY*LSILYV
Trigger: TACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTGTAATCCCCATCACTaGACGTCCCAGATTTCACAG +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRCNPHH*TSQISQ
Trigger: CTGTGAAATCTGGGACGTGCAGTGATGGGGATTACA...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTGCTTGCCAATTAGAATaGAGGATTCCCTGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGACQLE*RIPWSL
Trigger: AAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGC...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCGAACCTGTACATGATTaGTTGCCATTTCCGTCAAAA +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSEPVHD*LPFPSK
Trigger: TTTTGACGGAAATGGCAACCAATCATGTACAGGTTC...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGT +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEGLSRP*EDSGLS
Trigger: ACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCC...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGAATGCAGGATTCCCTaGAGCCTTTTAAAACACAAT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKECRIP*SLLKHN
Trigger: ATTGTGTTTTAAAAGGCTCCAGGGAATCCTGCATTC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGACAGAGCTAAAGTTTaGATTGTTTTGGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKDRAKV*IVLGQR
Trigger: TCTCTGACCCAAAACAATCCAAACTTTAGCTCTGTC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCCCAGCCAAGCTACTTaGGAAGTTGAAGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVPSQAT*EVEAGG
Trigger: TCCTCCTGCTTCAACTTCCCAAGTAGCTTGGCTGGG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCTGTTGATCTGGGGTaGGTTCAGTTTTCTCCCTGC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSVDLG*VQFSPC
Trigger: GCAGGGAGAAAACTGAACTCACCCCAGATCAACAGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAACGGAAGTTTCTTATTaGAAATCTCAGCTGAACGAA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKTEVSY*KSQLNE
Trigger: TTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTAGAGCATACTCCTCTTaGGTCATTTTCAGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGRAYSS*VIFSSP
Trigger: TGGGGAACTGAAAATGACTCAAGAGGAGTATGCTCT...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAATCAAGAAGTGGCTCCTaGAGCTTCTCTACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIESRSGS*SFSTAS
Trigger: AGAGGCAGTAGAGAAGCTTCAGGAGCCACTTCTTGA...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCAGCGTGGTGATGATTaGATGTCCGTAATTCAGTCA +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGQRGDD*MSVIQS
Trigger: TGACTGAATTACGGACATTCAATCATCACCACGCTG...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATCAAGATTTCTTGAGTaGAACTGGGTACAAGTGAAA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSRFLE*NWVQVK
Trigger: TTTCACTTGTACCCAGTTTCACTCAAGAAATCTTGA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATTCATCAAGATTTCTTaGGTGAAACTGGGTACAAGT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKFIKIS*VKLGTS
Trigger: ACTTGTACCCAGTTTCACTCAAGAAATCTTGATGAA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACAAGCAGTGTTCACTTTaGGCTATGTTTCTAAGTCTT +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDKQCSL*AMFLSL
Trigger: AAGACTTAGAAACATAGCTCAAAGTGAACACTGCTT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAAGCAGTGTTCACTTTaGGCTATGTTTCTAAGTCTT +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKKQCSL*AMFLSL
Trigger: AAGACTTAGAAACATAGCTCAAAGTGAACACTGCTT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATCTGAAGTTTCATCTTaGGGAAATGTCCAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSEVSS*GNVQKK
Trigger: TTTCTTCTGGACATTTCCTCAAGATGAAACTTCAGA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACTCTGAAGTTTCATCTTaGGGAAATGTCCAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDSEVSS*GNVQKK
Trigger: TTTCTTCTGGACATTTCCTCAAGATGAAACTTCAGA...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR TCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCAAACTCCAAAGTGTCTaGAGTTTCATCTTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSKLQSV*SFILRK
Trigger: TTTCCTCAAGATGAAACTTCAGACACTTTGGAGTTT...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACAAACTCCAAAGTGTCTaGAGTTTCATCTTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDKLQSV*SFILRK
Trigger: TTTCCTCAAGATGAAACTTCAGACACTTTGGAGTTT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR TCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAAACTCCAAAGTGTCTaGAGTTTCATCTTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKKLQSV*SFILRK
Trigger: TTTCCTCAAGATGAAACTTCAGACACTTTGGAGTTT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGGTTAGCTGCATACTCTaGATTTGTGAATCCTGCCTC +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRVSCIL*ICESCL
Trigger: GAGGCAGGATTCACAAATTCAGAGTATGCAGCTAAC...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGATTCACGGTCTGATCTaGATGCTGCTTCACATTTTT +
Preference number: 4 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLIHGLI*MLLHIF
Trigger: AAAAATGTGAAGCAGCATGCAGATCAGACCGTGAAT...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGGTTCAGTTTTCTCCCTaGATGACTTTGTTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRVQFSP*MTLLSR
Trigger: CCTCGACAACAAAGTCATGCAGGGAGAAAACTGAAC...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp GACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGAATCTTACACAACTTTTGTATCCAATAGGTCAGAATaGCCAGACGGAAGTTTCTTA +
Preference number: 4 (lower is better)
Translates to: DRQSVEDFQAGESYTTFVSNRSE*PDGSFL
Trigger: TAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGA...TACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCCTCAACACTTTGCCTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp CCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCCTGAAGCTTCTCTACTaGCTCTCTATCCTTTATGTA +
Preference number: 4 (lower is better)
Translates to: PLFRILSSNRSECPDGSFLKLLY*LSILYV
Trigger: TACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAG...GAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTAGTGGGGTAAACTTGTaGTCGTTTACTCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGSGVNL*SFTLHD
Trigger: GTCATGGAGAGTAAACGACCACAAGTTTACCCCACT...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVVLGQR*TFKALG
Trigger: TCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAAC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp GACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGAATCTTACACAACTTTTGTATGTCTTCTACCTCCTTaGATTGTTTTGGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: DRQSVEDFQAGESYTTFVCLLPP*IVLGQR
Trigger: TCTCTGACCCAAAACAATCCAAGGAGGTAGAAGACA...TACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCCTCAACACTTTGCCTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCTCTGTGGTAGGTAAATaGGAATGTTCAATGAGATTC +
Preference number: 4 (lower is better)
Translates to: IISSLLREESEGPITAVSSVVGK*ECSMRF
Trigger: GAATCTCATTGAACATTCCCATTTACCTACCACAGA...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACTCTGTGGTAGGTAAATaGGAATGTTCAATGAGATTC +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDSVVGK*ECSMRF
Trigger: GAATCTCATTGAACATTCCCATTTACCTACCACAGA...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATCTGTGGTAGGTAAATaGGAATGTTCAATGAGATTC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSVVGK*ECSMRF
Trigger: GAATCTCATTGAACATTCCCATTTACCTACCACAGA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGGTTGGAATAATAGGATaGCGAGGAAATCTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRVGIIG*RGNLWL
Trigger: CAACCACAGATTTCCTCGTCATCCTATTATTCCAAC...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAAGTTTTCTCCCTGCATaGCTTTGTTGTCGAGGTCAC +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIESFLPA*LCCRGH
Trigger: GTGACCTCGACAACAAAGTCATGCAGGGAGAAAACT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp GGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACCGCAGGATTTTCAGGCTGGTaGATCTTACACAACTTTTGT +
Preference number: 4 (lower is better)
Translates to: GSFLLKISAERRNIASTAGFSGW*ILHNFC
Trigger: ACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCC...TGCGGTTGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTGAGGGCTATTACAAATaGATGACTATTCACCAGGAC +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGEGYYK*MTIHQD
Trigger: GTCCTGGTGAATAGTCATTCATTTGTAATAGCCCTC...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGGGGGAAACTGAACATTaGTGTATTGCGAGTATGGTT +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRGETEH*CIASMV
Trigger: AACCATACTCGCAATACAGCAATGTTCAGTTTCCCC...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTATCCATCACACAGTTaGCCCCGTTTTTACACTTGT +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGYPSHS*PRFYTC
Trigger: ACAAGTGTAAAAACGGGGGCAACTGTGTGATGGATA...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp CCAGACGGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACATTCCCATCTCTTTaGATTTCCTTAGTCGACACT +
Preference number: 4 (lower is better)
Translates to: PDGSFLLKISAERRNIASTFPSL*ISLVDT
Trigger: AGTGTCGACTAAGGAAATGCAAAGAGATGGGAATGT...TGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR GCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTGTAATCCCCATCACTaGACGTCCCAGATTTCACAG +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVCNPHH*TSQISQ
Trigger: CTGTGAAATCTGGGACGTGCAGTGATGGGGATTACA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACAAGGCAAGTAACTTGTaGAAAGTTAAGGAATTTGTC +
Preference number: 4 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDKASNL*KVKEFV
Trigger: GACAAATTCCTTAACTTTGCACAAGTTACTTGCCTT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGCTGTATTGCGAGTATaGTTCCACTTCCAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVAVLRV*FHFQVL
Trigger: CAGAACCTGGAAGTGGAACCATACTCGCAATACAGC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGAACCTGTACATGATTaGTTGCCATTTCCGTCAAAA +
Preference number: 4 (lower is better)
Translates to: SEIPLFRILSSNRSECPDEPVHD*LPFPSK
Trigger: TTTTGACGGAAATGGCAACCAATCATGTACAGGTTC...GTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CCA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATATGTATTGTCTATCTaGAGACAGGATAACAATTGC +
Preference number: 4 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKYVLSI*RQDNNC
Trigger: GCAATTGTTATCCTGTCTCCAGATAGACAATACATA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATAGTGGGGTAAACTTGTaGTCGTTTACTCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: YFEFFLPIGQNAQTEVSYSGVNL*SFTLHD
Trigger: GTCATGGAGAGTAAACGACCACAAGTTTACCCCACT...ATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAACTTAGTCGACACTCTTaGCACTTTCTTCGCATGTAC +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIELSRHS*HFLRMY
Trigger: GTACATGCGAAGAAAGTGTCAAGAGTGTCGACTAAG...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCTTAGTCGACACTCTTaGCACTTTCTTCGCATGTAC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVLSRHS*HFLRMY
Trigger: GTACATGCGAAGAAAGTGTCAAGAGTGTCGACTAAG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTACAAGAACCTGTACATaGTTGGTTGCCATTTCCGTC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVTRTCT*LVAISV
Trigger: GACGGAAATGGCAACCAATCATGTACAGGTTCTTGT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGATTGAAAATCTCAGCTaGACGAAGGAACATAGCTTC +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRIENLS*TKEHSF
Trigger: GAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAAT...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAAGAGCATACTCCTCTTaGGTCATTTTCAGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIERAYSS*VIFSSP
Trigger: TGGGGAACTGAAAATGACTCAAGAGGAGTATGCTCT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTAGAGCATACTCCTCTTaGGTCATTTTCAGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVRAYSS*VIFSSP
Trigger: TGGGGAACTGAAAATGACTCAAGAGGAGTATGCTCT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGACATTCCCATCTCTTTaGATTTCCTTAGTCGACACT +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRTFPSL*ISLVDT
Trigger: AGTGTCGACTAAGGAAATGCAAAGAGATGGGAATGT...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTATTCACGGTCTGATCTaGATGCTGCTTCACATTTTT +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGIHGLI*MLLHIF
Trigger: AAAAATGTGAAGCAGCATGCAGATCAGACCGTGAAT...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR GCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGAGACAGGATAACAATTaGTGTAAGCAGAGCATACTC +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRRQDNN*CKQSIL
Trigger: GAGTATGCTCTGCTTACAGCAATTGTTATCCTGTCT...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp CCAGACGGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCATCTGTGGTAGGTAAATaGGAATGTTCAATGAGATTC +
Preference number: 4 (lower is better)
Translates to: PDGSFLLKISAERRNIASSVVGK*ECSMRF
Trigger: GAATCTCATTGAACATTCCCATTTACCTACCACAGA...TGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAGTTGGAATAATAGGATaGCGAGGAAATCTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEVGIIG*RGNLWL
Trigger: CAACCACAGATTTCCTCGTCATCCTATTATTCCAAC...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGTTGGAATAATAGGATaGCGAGGAAATCTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVVGIIG*RGNLWL
Trigger: CAACCACAGATTTCCTCGTCATCCTATTATTCCAAC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTCATCAAGATTTCTTaGGTGAAACTGGGTACAAGT +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRFIKIS*VKLGTS
Trigger: ACTTGTACCCAGTTTCACTCAAGAAATCTTGATGAA...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCTGAAGTTTCATCTTaGGGAAATGTCCAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRSEVSS*GNVQKK
Trigger: TTTCTTCTGGACATTTCCTCAAGATGAAACTTCAGA...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTAAACTCCAAAGTGTCTaGAGTTTCATCTTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGKLQSV*SFILRK
Trigger: TTTCCTCAAGATGAAACTTCAGACACTTTGGAGTTT...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGCGCTTAGATTTACACTaGATTTCAGTTAACAAGCCT +
Preference number: 4 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRRLDLH*ISVNKP
Trigger: AGGCTTGTTAACTGAAATTCAGTGTAAATCTAAGCG...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000392986.8
CDS-3UTR GCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGGGGAAACTGAACATTaGTGTATTGCGAGTATGGTT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVGETEH*CIASMV
Trigger: AACCATACTCGCAATACAGCAATGTTCAGTTTCCCC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTATCCATCACACAGTTaGCCCCGTTTTTACACTTGT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVYPSHS*PRFYTC
Trigger: ACAAGTGTAAAAACGGGGGCAACTGTGTGATGGATA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCCAATAGGTCAGAATaGCCAGACGGAAGTTTCTTA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSNRSE*PDGSFL
Trigger: TAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTAAGAGTCTGTTGATCTaGGGTGAGTTCAGTTTTCTC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVKSLLI*GEFSFL
Trigger: GAGAAAACTGAACTCACCCCAGATCAACAGACTCTT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTTCAGCAAAGCAATCTaGTCTTCATGGTCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVFSKAI*SSWSKV
Trigger: GACTTTGGACCATGAAGACCAGATTGCTTTGCTGAA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGATTTCACAGAGAAGTaGGGTAAACTTGTGGTCGTT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVDFTEK*GKLVVV
Trigger: AACGACCACAAGTTTACCCCACTTCTCTGTGAAATC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTGTCTTCTACCTCCTTaGATTGTTTTGGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVCLLPP*IVLGQR
Trigger: TCTCTGACCCAAAACAATCCAAGGAGGTAGAAGACA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTCTGTGGTAGGTAAATaGGAATGTTCAATGAGATTC +
Preference number: 4 (lower is better)
Translates to: LDTMKPIISSLLREESEGSVVGK*ECSMRF
Trigger: GAATCTCATTGAACATTCCCATTTACCTACCACAGA...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTATTGAAAATCTCAGCTaGACGAAGGAACATAGCTTC +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVIENLS*TKEHSF
Trigger: GAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAAT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATACGGAAGTTTCTTATTaGAAATCTCAGCTGAACGAA +
Preference number: 4 (lower is better)
Translates to: YFEFFLPIGQNAQTEVSYTEVSY*KSQLNE
Trigger: TTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGT...ATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGGATTTTCAGGCTGGTaGATCTTACACAACTTTTGT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVGFSGW*ILHNFC
Trigger: ACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTATTCACGGTCTGATCTaGATGCTGCTTCACATTTTT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVIHGLI*MLLHIF
Trigger: AAAAATGTGAAGCAGCATGCAGATCAGACCGTGAAT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR GCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCTGAAGCTTCTCTACTaGCTCTCTATCCTTTATGTA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVLKLLY*LSILYV
Trigger: TACATAAAGGATAGAGAGGCAGTAGAGAAGCTTCAG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAGAACCTGTACATGATTaGTTGCCATTTCCGTCAAAA +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEEPVHD*LPFPSK
Trigger: TTTTGACGGAAATGGCAACCAATCATGTACAGGTTC...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGAACCTGTACATGATTaGTTGCCATTTCCGTCAAAA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVEPVHD*LPFPSK
Trigger: TTTTGACGGAAATGGCAACCAATCATGTACAGGTTC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGAATGCAGGATTCCCTaGAGCCTTTTAAAACACAAT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVECRIP*SLLKHN
Trigger: ATTGTGTTTTAAAAGGCTCCAGGGAATCCTGCATTC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAGAATGCAGGATTCCCTaGAGCCTTTTAAAACACAAT +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEECRIP*SLLKHN
Trigger: ATTGTGTTTTAAAAGGCTCCAGGGAATCCTGCATTC...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAACGGAAGTTTCTTATTaGAAATCTCAGCTGAACGAA +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIETEVSY*KSQLNE
Trigger: TTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTTCATCAAGATTTCTTaGGTGAAACTGGGTACAAGT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVFIKIS*VKLGTS
Trigger: ACTTGTACCCAGTTTCACTCAAGAAATCTTGATGAA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAAAGCAGTGTTCACTTTaGGCTATGTTTCTAAGTCTT +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEKQCSL*AMFLSL
Trigger: AAGACTTAGAAACATAGCTCAAAGTGAACACTGCTT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCTGAAGTTTCATCTTaGGGAAATGTCCAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSEVSS*GNVQKK
Trigger: TTTCTTCTGGACATTTCCTCAAGATGAAACTTCAGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR TCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCGCTTAGATTTACACTaGATTTCAGTTAACAAGCCT +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVRLDLH*ISVNKP
Trigger: AGGCTTGTTAACTGAAATTCAGTGTAAATCTAAGCG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000648861.1
CDS-3UTR CCA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTAAGTTTGGATTGTTTTaGGTCAGAGATGGACTTTCA +
Preference number: 4 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVKFGLF*VRDGLS
Trigger: TGAAAGTCCATCTCTGACCCAAAACAATCCAAACTT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR CCA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAATATGTATTGTCTATCTaGAGACAGGATAACAATTGC +
Preference number: 4 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEYVLSI*RQDNNC
Trigger: GCAATTGTTATCCTGTCTCCAGATAGACAATACATA...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS TCA 90 bp GTCTCCACAAACAACACACAGCTCATCCCCTTTGATCCTCCCTGCTaGCGCGCCCATGCGGGGCTTCTTTGTTACAGGCATCTCTGCTAC +
Preference number: 5 (lower is better)
Translates to: VSTNNTQLIPFDPPC*RAHAGLLCYRHLCY
Trigger: GTAGCAGAGATGCCTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGTGTGTTGTTTGTGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGTGTTGTCGAGGTCACTaGTCGCAAGTCACGACCTTC +
Preference number: 5 (lower is better)
Translates to: FSQATQETGKVLRIFRLVCCRGH*SQVTTF
Trigger: GAAGGTCGTGACTTGCGACAAGTGACCTCGACAACA...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS TCA 90 bp CTACCTCAGTTTCTCCCTGGTAGAGAGTCTCAGCTGGCATACGCCTaGGTTCATATATTCCAGGAGAGTACCACTCTTCAGGCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: LPQFLPGRESQLAYA*VHIFQESTTLQAAG
Trigger: CCCAGCAGCCTGAAGAGTGGTACTCTCCTGGAATATATGAACTCAGGCGTATGCCAGCTGAGACTCTCTACCAGGGAGAAACTGAGGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 90 bp TACCTCCTTGGATTGTTTTGGGTCAGAGATGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGTCTTCCTCTCCAGATCCCAGCGATT +
Preference number: 5 (lower is better)
Translates to: YLLGLFWVRDGLSRP*EDSGLSLPLQIPAI
Trigger: AATCGCTGGGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548884.5
ENST00000549996.5
CDS-3UTR CAA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCCACAGCTCATCCCCTTaGATCCTCCCTGCTGACGCG +
Preference number: 5 (lower is better)
Translates to: IISSLLREESEGPITAVSHSSSP*ILPADA
Trigger: CGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGTG...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACACAGCTCATCCCCTTaGATCCTCCCTGCTGACGCG +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKHSSSP*ILPADA
Trigger: CGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGTG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTTGTTGTCGAGGTCACTaGTCGCAAGTCACGACCTTC +
Preference number: 5 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVCCRGH*SQVTTF
Trigger: GAAGGTCGTGACTTGCGACAAGTGACCTCGACAACA...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCCCTGCATGACTTTGTaGTCGAGGTCACTTGTCGCA +
Preference number: 5 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVPCMTL*SRSLVA
Trigger: TGCGACAAGTGACCTCGACAACAAAGTCATGCAGGG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGCAGAGCATACTCCTCTaGAGTCATTTTCAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSQSILL*SHFQFP
Trigger: GGGGAACTGAAAATGACTCAAGAGGAGTATGCTCTG...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGTACACCTGCATGACTTaGTTGTCGAGGTCACTTGTC +
Preference number: 5 (lower is better)
Translates to: FSQATQETGKVLRIFRLVYTCMT*LSRSLV
Trigger: GACAAGTGACCTCGACAACAAAGTCATGCAGGTGTA...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS TCA 90 bp TTTGGGTCAGAGATGGACTTTCAAGGCCCTGGGAGGATTCTGGACTaGGTCTTCCTCTCCAGATCCCAGCGATTTTGCTACAAATGCTCA +
Preference number: 5 (lower is better)
Translates to: FGSEMDFQGPGRILD*VFLSRSQRFCYKCS
Trigger: TGAGCATTTGTAGCAAAATCGCTGGGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548884.5
ENST00000549996.5
ENST00000648861.1
ENST00000649582.1
CDS CCA 90 bp CTGTGGTTGAACTTGGGGAAACTGAACATTGCTGTATTGCGAGTATaGTTCCACTTCCAGGTTCTGTCCCAGAGGACCTGCCACTTGTTC +
Preference number: 5 (lower is better)
Translates to: LWLNLGKLNIAVLRV*FHFQVLSQRTCHLF
Trigger: GAACAAGTGGCAGGTCCTCTGGGACAGAACCTGGAAGTGGAACCATACTCGCAATACAGCAATGTTCAGTTTCCCCAAGTTCAACCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 90 bp CAGGAGAGTACCACTCTTCAGGCTGCTGGGGGTAGAAACCCAGGTTaGAATAATAGGATGACGAGGAAATCTGTGGTTGAACTTGGGGAA +
Preference number: 5 (lower is better)
Translates to: QESTTLQAAGGRNPG*NNRMTRKSVVELGE
Trigger: TTCCCCAAGTTCAACCACAGATTTCCTCGTCATCCTATTATTCCAACCTGGGTTTCTACCCCCAGCAGCCTGAAGAGTGGTACTCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 90 bp AGGCATCTCTGCTACCTCAGTTTCTCCCTGGTAGAGAGTCTCAGCTaGCATACGCCTGAGTTCATATATTCCAGGAGAGTACCACTCTTC +
Preference number: 5 (lower is better)
Translates to: RHLCYLSFSLVESLS*HTPEFIYSRRVPLF
Trigger: GAAGAGTGGTACTCTCCTGGAATATATGAACTCAGGCGTATGCCAGCTGAGACTCTCTACCAGGGAGAAACTGAGGTAGCAGAGATGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 90 bp AGCCTGGACGACAGAGCTAAAGTTTGGATTGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGAGGATTCTGGACTGAGTCTTCCTCT +
Preference number: 5 (lower is better)
Translates to: SLDDRAKVWIVLGQR*TFKALGGFWTESSS
Trigger: AGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAACTTTAGCTCTGTCGTCCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000648861.1
ENST00000649582.1
CDS-3UTR CAA 90 bp TTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGCTGAACATTGCTGTATaGCGAGTATGGTTCCACTTC +
Preference number: 5 (lower is better)
Translates to: FSQATQETGKVLRIFRLVLNIAV*RVWFHF
Trigger: GAAGTGGAACCATACTCGCAATACAGCAATGTTCAG...CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp CCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGTCGCAGATCCCAGCGATTTaGCTACAAATGCTCAGAATC +
Preference number: 5 (lower is better)
Translates to: PHHCTSQISQRSGVNLWSQIPAI*LQMLRI
Trigger: GATTCTGAGCATTTGTAGCAAAATCGCTGGGATCTG...CGACCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS CCA 90 bp CTTCTACGATGTCTTCTACCTCCTTGGATTGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGAGGATTCTGGACTGAGTCTTCCTCT +
Preference number: 5 (lower is better)
Translates to: LLRCLLPPWIVLGQR*TFKALGGFWTESSS
Trigger: AGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGGTAGAAGACATCGTAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548884.5
ENST00000549996.5
CDS CCA 90 bp CTAAAGTTTGGATTGTTTTGGGTCAGAGATGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGTCTTCCTCTCCAGATCCCAGCGATT +
Preference number: 5 (lower is better)
Translates to: LKFGLFWVRDGLSRP*EDSGLSLPLQIPAI
Trigger: AATCGCTGGGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAACTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000648861.1
ENST00000649582.1
CDS-3UTR CAA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGCGAGGAAATCTGTGGTaGAACTTGGGGAAACTGAAC +
Preference number: 5 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWRGNLW*NLGKLN
Trigger: GTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCG...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTCGAGGAAATCTGTGGTaGAACTTGGGGAAACTGAAC +
Preference number: 5 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVRGNLW*NLGKLN
Trigger: GTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCG...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp GGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACCGCACACAGCTCATCCCCTTaGATCCTCCCTGCTGACGCG +
Preference number: 5 (lower is better)
Translates to: GSFLLKISAERRNIASTAHSSSP*ILPADA
Trigger: CGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGTG...TGCGGTTGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS TCA 90 bp CTCTTCAGGCTGCTGGGGGTAGAAACCCAGGTTGGAATAATAGGATaGCGAGGAAATCTGTGGTTGAACTTGGGGAAACTGAACATTGCT +
Preference number: 5 (lower is better)
Translates to: LFRLLGVETQVGIIG*RGNLWLNLGKLNIA
Trigger: AGCAATGTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCGTCATCCTATTATTCCAACCTGGGTTTCTACCCCCAGCAGCCTGAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS GCA 90 bp AGGATGACGAGGAAATCTGTGGTTGAACTTGGGGAAACTGAACATTaGTGTATTGCGAGTATGGTTCCACTTCCAGGTTCTGTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: RMTRKSVVELGETEH*CIASMVPLPGSVPE
Trigger: CTCTGGGACAGAACCTGGAAGTGGAACCATACTCGCAATACAGCAATGTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCGTCATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 90 bp ATTGTTTTGGGTCAGAGATGGACTTTCAAGGCCCTGGGAGGATTCTaGACTGAGTCTTCCTCTCCAGATCCCAGCGATTTTGCTACAAAT +
Preference number: 5 (lower is better)
Translates to: IVLGQRWTFKALGGF*TESSSPDPSDFATN
Trigger: ATTTGTAGCAAAATCGCTGGGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548884.5
ENST00000549996.5
ENST00000648861.1
ENST00000649582.1
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACCATGCGGGGCTTCTTaGTTACAGGCATCTCTGCTA +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKPCGAS*LQASLL
Trigger: TAGCAGAGATGCCTGTAACAAAGAAGCCCCGCATGG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTATATCCATCACACAGTaGCCCCCGTTTTTACACTTG +
Preference number: 5 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVISITQ*PPFLHL
Trigger: CAAGTGTAAAAACGGGGGCAACTGTGTGATGGATAT...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACCCTGCATGACTTTGTaGTCGAGGTCACTTGTCGCA +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKPCMTL*SRSLVA
Trigger: TGCGACAAGTGACCTCGACAACAAAGTCATGCAGGG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp GTAATTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTATGTCTTCTACCTCCTaGGATTGTTTTGGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: VIQSGDPGDRQSVEDFQAMSSTS*DCFGSE
Trigger: CTCTGACCCAAAACAATCCAAGGAGGTAGAAGACAT...AGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAATTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTTTAGGCAAACAGGGCTaGCCAATTAGAATGCAGGAT +
Preference number: 5 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVLGKQG*PIRMQD
Trigger: ATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp GTAATTCAGTCAGGCGACCCAGGAGACAGGCAAAGTGTTGAGGATTTTCAGGCTTTGTACACAGCGTTTTaGGTAATGCTTCTCCTGAAG +
Preference number: 5 (lower is better)
Translates to: VIQSGDPGDRQSVEDFQALYTAF*VMLLLK
Trigger: CTTCAGGAGAAGCATTACCAAAAACGCTGTGTACAA...AGCCTGAAAATCCTCAACACTTTGCCTGTCTCCTGGGTCGCCTGACTGAATTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp AATCCCCATCACTGCACGTCCCAGATTTCACAGAGAAGTGGGGTAAACTTGTGGAACATTCCCATCTCTTaGCATTTCCTTAGTCGACAC +
Preference number: 5 (lower is better)
Translates to: NPHHCTSQISQRSGVNLWNIPIS*HFLSRH
Trigger: GTGTCGACTAAGGAAATGCAAAGAGATGGGAATGTT...CCACAAGTTTACCCCACTTCTCTGTGAAATCTGGGACGTGCAGTGATGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATCTCCCTGCATGACTTaGTTGTCGAGGTCACTTGTC +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKSPCMT*LSRSLV
Trigger: GACAAGTGACCTCGACAACAAAGTCATGCAGGGAGA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGAGACAGGCAAAGTGTaGAGGATTTTCAGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKETGKV*RIFRLV
Trigger: CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCCGAGGAAATCTGTGGTaGAACTTGGGGAAACTGAAC +
Preference number: 5 (lower is better)
Translates to: IISSLLREESEGPITAVSRGNLW*NLGKLN
Trigger: GTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCG...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CATCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGCCATGCGGGGCTTCTTaGTTACAGGCATCTCTGCTA +
Preference number: 5 (lower is better)
Translates to: HQRYHYFEFFLPIGQNAQPCGAS*LQASLL
Trigger: TAGCAGAGATGCCTGTAACAAAGAAGCCCCGCATGG...CTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCACAGCTCATCCCCTTaGATCCTCCCTGCTGACGCG +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVHSSSP*ILPADA
Trigger: CGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGTG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAACAGAGCATACTCCTCTaGAGTCATTTTCAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKQSILL*SHFQFP
Trigger: GGGGAACTGAAAATGACTCAAGAGGAGTATGCTCTG...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACCCTCCTTGGATTGTTTaGGGTCAGAGATGGACTTTC +
Preference number: 5 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDPPWIV*GQRWTF
Trigger: GAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGG...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CAA 90 bp ATTCCTGCTTTGGGGGAAGTATACAGCAGCTGTGCTCCCAGCTGTAGGAATGTTGAAGCAGTGTTCACTTaGAGCTATGTTTCTAAGTCT +
Preference number: 5 (lower is better)
Translates to: IPALGEVYSSCAPSCRNVEAVFT*SYVSKS
Trigger: AGACTTAGAAACATAGCTCAAAGTGAACACTGCTTC...AACATTCCTACAGCTGGGAGCACAGCTGCTGTATACTTCCCCCAAAGCAGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACAGTAGATGGCAGAGATaGGAACCAACCCAGGAAATC +
Preference number: 5 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDSRWQR*EPTQEI
Trigger: GATTTCCTGGGTTGGTTCCAATCTCTGCCATCTACT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAAGCTACTTGGGAAGTaGAAGCAGGAGGATCACTTG +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKKLLGK*KQEDHL
Trigger: CAAGTGATCCTCCTGCTTCAACTTCCCAAGTAGCTT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR CAA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCCTGAACATTGCTGTATaGCGAGTATGGTTCCACTTC +
Preference number: 5 (lower is better)
Translates to: IISSLLREESEGPITAVSLNIAV*RVWFHF
Trigger: GAAGTGGAACCATACTCGCAATACAGCAATGTTCAG...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCATGCGGGGCTTCTTaGTTACAGGCATCTCTGCTA +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGPCGAS*LQASLL
Trigger: TAGCAGAGATGCCTGTAACAAAGAAGCCCCGCATGG...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAATATCCATCACACAGTaGCCCCCGTTTTTACACTTG +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKISITQ*PPFLHL
Trigger: CAAGTGTAAAAACGGGGGCAACTGTGTGATGGATAT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp ATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCCCATCACTGCAGTTAGCAGAAGTGGGGTAAACTaGTGGTCGTTTACTCTCCAT +
Preference number: 5 (lower is better)
Translates to: IISSLLREESEGPITAVSRSGVN*WSFTLH
Trigger: ATGGAGAGTAAACGACCACAAGTTTACCCCACTTCT...GCTAACTGCAGTGATGGGACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAGAAGTGGGGTAAACTaGTGGTCGTTTACTCTCCAT +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKRSGVN*WSFTLH
Trigger: ATGGAGAGTAAACGACCACAAGTTTACCCCACTTCT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACTTCTACCTCCTTGGATaGTTTTGGGTCAGAGATGGA +
Preference number: 5 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDFYLLG*FWVRDG
Trigger: TCCATCTCTGACCCAAAACAATCCAAGGAGGTAGAA...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CAA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACATGTCTTCTACCTCCTaGGATTGTTTTGGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDMSSTS*DCFGSE
Trigger: CTCTGACCCAAAACAATCCAAGGAGGTAGAAGACAT...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CAA 90 bp CCAGACGGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACCTGCATGACTTTGTaGTCGAGGTCACTTGTCGCA +
Preference number: 5 (lower is better)
Translates to: PDGSFLLKISAERRNIASTCMTL*SRSLVA
Trigger: TGCGACAAGTGACCTCGACAACAAAGTCATGCAGGT...TGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCCGTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS TCA 90 bp AACACCTTTCGCGGGCTTCATACTCATCATTTCCATGAAAAATCCTaGCGGCGTACAGCTGCAGTGAGGACTAATTTGAATTGGATTTTC +
Preference number: 5 (lower is better)
Translates to: NTFRGLHTHHFHEKS*RRTAAVRTNLNWIF
Trigger: GAAAATCCAATTCAAATTAGTCCTCACTGCAGCTGTACGCCGTCAGGATTTTTCATGGAAATGATGAGTATGAAGCCCGCGAAAGGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000188403.7
ENST00000551379.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAATTGTACACAGCGTTTTaGGTAATGCTTCTCCTGAAG +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKLYTAF*VMLLLK
Trigger: CTTCAGGAGAAGCATTACCAAAAACGCTGTGTACAA...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAACATTCCCATCTCTTaGCATTTCCTTAGTCGACAC +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKNIPIS*HFLSRH
Trigger: GTGTCGACTAAGGAAATGCAAAGAGATGGGAATGTT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTCTCCCTGCATGACTTaGTTGTCGAGGTCACTTGTC +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGSPCMT*LSRSLV
Trigger: GACAAGTGACCTCGACAACAAAGTCATGCAGGGAGA...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp GACAGGCAAAGTGTTGAGGATTTTCAGGCTGGTGAATCTTACACAACTTTTGTACCTCCTTGGATTGTTTaGGGTCAGAGATGGACTTTC +
Preference number: 5 (lower is better)
Translates to: DRQSVEDFQAGESYTTFVPPWIV*GQRWTF
Trigger: GAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGG...TACAAAAGTTGTGTAAGATTCACCAGCCTGAAAATCCTCAACACTTTGCCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGTTCTACCTCCTTGGATaGTTTTGGGTCAGAGATGGA +
Preference number: 5 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLFYLLG*FWVRDG
Trigger: TCCATCTCTGACCCAAAACAATCCAAGGAGGTAGAA...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAAGCAGCATCTCTTCCTaGGCTCTGTGCCTCATGGAC +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIESSISS*ALCLMD
Trigger: GTCCATGAGGCACAGAGCCAAGGAAGAGATGCTGCT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000548884.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAGAGCTAAAGTTTGGATaGTTTTGGGTCAGAGATGGA +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKELKFG*FWVRDG
Trigger: TCCATCTCTGACCCAAAACAATCCAAACTTTAGCTC...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCCATGCGGGGCTTCTTaGTTACAGGCATCTCTGCTA +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVPCGAS*LQASLL
Trigger: TAGCAGAGATGCCTGTAACAAAGAAGCCCCGCATGG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp GGAAGTTTCTTATTGAAAATCTCAGCTGAACGAAGGAACATAGCTTCAACCGCAATATCCATCACACAGTaGCCCCCGTTTTTACACTTG +
Preference number: 5 (lower is better)
Translates to: GSFLLKISAERRNIASTAISITQ*PPFLHL
Trigger: CAAGTGTAAAAACGGGGGCAACTGTGTGATGGATAT...TGCGGTTGAAGCTATGTTCCTTCGTTCAGCTGAGATTTTCAATAAGAAACTTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAATGTTGTCGAGGTCACTaGTCGCAAGTCACGACCTTC +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIECCRGH*SQVTTF
Trigger: GAAGGTCGTGACTTGCGACAAGTGACCTCGACAACA...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTGTTGTCGAGGTCACTaGTCGCAAGTCACGACCTTC +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVCCRGH*SQVTTF
Trigger: GAAGGTCGTGACTTGCGACAAGTGACCTCGACAACA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATGAGACAGGCAAAGTGTaGAGGATTTTCAGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: YFEFFLPIGQNAQTEVSYETGKV*RIFRLV
Trigger: CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTC...ATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp CATCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGAGAAGTGGGGTAAACTaGTGGTCGTTTACTCTCCAT +
Preference number: 5 (lower is better)
Translates to: HQRYHYFEFFLPIGQNAQRSGVN*WSFTLH
Trigger: ATGGAGAGTAAACGACCACAAGTTTACCCCACTTCT...CTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGCCTCCTTGGATTGTTTaGGGTCAGAGATGGACTTTC +
Preference number: 5 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRPPWIV*GQRWTF
Trigger: GAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGG...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATTGAAAATCTCAGCTTTCTACCTCCTTGGATaGTTTTGGGTCAGAGATGGA +
Preference number: 5 (lower is better)
Translates to: SSNRSECPDGSFLLKISAFYLLG*FWVRDG
Trigger: TCCATCTCTGACCCAAAACAATCCAAGGAGGTAGAA...AGCTGAGATTTTCAATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp GGTTCTCCATGGAAGTTTAGGGACGAGTTCTTAAATGAGAACACATGGATGGACGAAGCAGTGTTCACTTaGAGCTATGTTTCTAAGTCT +
Preference number: 5 (lower is better)
Translates to: GSPWKFRDEFLNENTWMDEAVFT*SYVSKS
Trigger: AGACTTAGAAACATAGCTCAAAGTGAACACTGCTTC...GTCCATCCATGTGTTCTCATTTAAGAACTCGTCCCTAAACTTCCATGGAGAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTGAACTAATTCCTGCTTaGGGGGAAGTATACAGCAGC +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGELIPA*GEVYSS
Trigger: GCTGCTGTATACTTCCCCCAAAGCAGGAATTAGTTC...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTAGGCAAACAGGGCTTGCCAATTAGAATGCAGGATTCCCTGGAGCCTTTTAAAAAAGTTTGGATTGTTTaGGGTCAGAGATGGACTTTC +
Preference number: 5 (lower is better)
Translates to: LGKQGLPIRMQDSLEPFKKVWIV*GQRWTF
Trigger: GAAAGTCCATCTCTGACCCAAAACAATCCAAACTTT...TTTAAAAGGCTCCAGGGAATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000648861.1
CDS-3UTR CAA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGCTGAACATTGCTGTATaGCGAGTATGGTTCCACTTC +
Preference number: 5 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRLNIAV*RVWFHF
Trigger: GAAGTGGAACCATACTCGCAATACAGCAATGTTCAG...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGATATCCATCACACAGTaGCCCCCGTTTTTACACTTG +
Preference number: 5 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRISITQ*PPFLHL
Trigger: CAAGTGTAAAAACGGGGGCAACTGTGTGATGGATAT...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCTCCCTGCATGACTTaGTTGTCGAGGTCACTTGTC +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSPCMT*LSRSLV
Trigger: GACAAGTGACCTCGACAACAAAGTCATGCAGGGAGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGAGACAGGCAAAGTGTaGAGGATTTTCAGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVETGKV*RIFRLV
Trigger: CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAGAGACAGGCAAAGTGTaGAGGATTTTCAGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEETGKV*RIFRLV
Trigger: CACCAGCCTGAAAATCCTCAACACTTTGCCTGTCTC...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTCAGATCCCAGCGATTTaGCTACAAATGCTCAGAATC +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGQIPAI*LQMLRI
Trigger: GATTCTGAGCATTTGTAGCAAAATCGCTGGGATCTG...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTATGTCTTCTACCTCCTaGGATTGTTTTGGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGMSSTS*DCFGSE
Trigger: CTCTGACCCAAAACAATCCAAGGAGGTAGAAGACAT...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp ATTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGATGTCTTCTACCTCCTaGGATTGTTTTGGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: IGYNEANHFLTFKRGKRRMSSTS*DCFGSE
Trigger: CTCTGACCCAAAACAATCCAAGGAGGTAGAAGACAT...CCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGGAAGCAGTGTTCACTTaGAGCTATGTTTCTAAGTCT +
Preference number: 5 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLEAVFT*SYVSKS
Trigger: AGACTTAGAAACATAGCTCAAAGTGAACACTGCTTC...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTTAGGCAAACAGGGCTaGCCAATTAGAATGCAGGAT +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGLGKQG*PIRMQD
Trigger: ATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCGAGGAAATCTGTGGTaGAACTTGGGGAAACTGAAC +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVRGNLW*NLGKLN
Trigger: GTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAACAGAGCATACTCCTCTaGAGTCATTTTCAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEQSILL*SHFQFP
Trigger: GGGGAACTGAAAATGACTCAAGAGGAGTATGCTCTG...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp ATTCACCAGGACTTTTCCAGAGATGACAAAAGTGCGAGAGACAGTATCTTTCTGTCTATCCTTTATGTATaGTCTATCTGGAGACAGGAT +
Preference number: 5 (lower is better)
Translates to: IHQDFSRDDKSARDSIFLSILYV*SIWRQD
Trigger: ATCCTGTCTCCAGATAGACAATACATAAAGGATAGA...CAGAAAGATACTGTCTCTCGCACTTTTGTCATCTCTGGAAAAGTCCTGGTGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAACCTCCTTGGATTGTTTaGGGTCAGAGATGGACTTTC +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEPPWIV*GQRWTF
Trigger: GAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGG...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TCAGAGATACCACTATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGAAGCAGTGTTCACTTaGAGCTATGTTTCTAAGTCT +
Preference number: 5 (lower is better)
Translates to: SEIPLFRILSSNRSECPDEAVFT*SYVSKS
Trigger: AGACTTAGAAACATAGCTCAAAGTGAACACTGCTTC...GTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATAGTGGTATCTCTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAGAACTAATTCCTGCTTaGGGGGAAGTATACAGCAGC +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEELIPA*GEVYSS
Trigger: GCTGCTGTATACTTCCCCCAAAGCAGGAATTAGTTC...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS GCA 90 bp CAGGCATTCTTCTTATCACCTTATTTAAATAAGGCAAGTAACTTGTaGAAAGTTAAGGAATTTGTCCAAGACCACAGGGTAGTAGATGGC +
Preference number: 5 (lower is better)
Translates to: QAFFLSPYLNKASNL*KVKEFVQDHRVVDG
Trigger: GCCATCTACTACCCTGTGGTCTTGGACAAATTCCTTAACTTTGCACAAGTTACTTGCCTTATTTAAATAAGGTGATAAGAAGAATGCCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCTGAACATTGCTGTATaGCGAGTATGGTTCCACTTC +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVLNIAV*RVWFHF
Trigger: GAAGTGGAACCATACTCGCAATACAGCAATGTTCAG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TATTTCGAATTCTTTCTTCCAATAGGTCAGAATGCCCAGACGGAAGTTTCTTATAATCTGTGGTTGAACTaGGGGAAACTGAACATTGCT +
Preference number: 5 (lower is better)
Translates to: YFEFFLPIGQNAQTEVSYNLWLN*GKLNIA
Trigger: AGCAATGTTCAGTTTCCCCAAGTTCAACCACAGATT...ATAAGAAACTTCCGTCTGGGCATTCTGACCTATTGGAAGAAAGAATTCGAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321046.9
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTAGAAGTGGGGTAAACTaGTGGTCGTTTACTCTCCAT +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVRSGVN*WSFTLH
Trigger: ATGGAGAGTAAACGACCACAAGTTTACCCCACTTCT...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTCAGATCCCAGCGATTTaGCTACAAATGCTCAGAATC +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVQIPAI*LQMLRI
Trigger: GATTCTGAGCATTTGTAGCAAAATCGCTGGGATCTG...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAATTCTACCTCCTTGGATaGTTTTGGGTCAGAGATGGA +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIEFYLLG*FWVRDG
Trigger: TCCATCTCTGACCCAAAACAATCCAAGGAGGTAGAA...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTTAGGCAAACAGGGCTaGCCAATTAGAATGCAGGAT +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVLGKQG*PIRMQD
Trigger: ATCCTGCATTCTAATTGGCAAGCCCTGTTTGCCTAA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTTGTACACAGCGTTTTaGGTAATGCTTCTCCTGAAG +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVLYTAF*VMLLLK
Trigger: CTTCAGGAGAAGCATTACCAAAAACGCTGTGTACAA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAAAACATTCCCATCTCTTaGCATTTCCTTAGTCGACAC +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIENIPIS*HFLSRH
Trigger: GTGTCGACTAAGGAAATGCAAAGAGATGGGAATGTT...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp TTGGATACAATGAAGCCAATCATTTCCTCACTTTTAAGAGAGGAAAGCGAAGGTTCTATCCTTTATGTATaGTCTATCTGGAGACAGGAT +
Preference number: 5 (lower is better)
Translates to: LDTMKPIISSLLREESEGSILYV*SIWRQD
Trigger: ATCCTGTCTCCAGATAGACAATACATAAAGGATAGA...ACCTTCGCTTTCCTCTCTTAAAAGTGAGGAAATGATTGGCTTCATTGTATCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTGAAGCAGTGTTCACTTaGAGCTATGTTTCTAAGTCT +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVEAVFT*SYVSKS
Trigger: AGACTTAGAAACATAGCTCAAAGTGAACACTGCTTC...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS-3UTR CAA 90 bp TGTTCCCAAAGAAAATCCTGTTGCCATTATGTTTGCTTTATTGCCAAGATTGAACTATGGGGGAAAGGATaGCTTGAGGGAATATTTTAT +
Preference number: 5 (lower is better)
Translates to: CSQRKSCCHYVCFIAKIELWGKG*LEGIFY
Trigger: ATAAAATATTCCCTCAAGCAATCCTTTCCCCCATAG...TTCAATCTTGGCAATAAAGCAAACATAATGGCAACAGGATTTTCTTTGGGAACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000392986.8
ENST00000548884.5
CDS-3UTR CAA 90 bp CACAATGTAGAGAAAGTTGTTCTATCTAGCCCAATATTTACAGTTGTGGAAGTTTCTATCCTTTATGTATaGTCTATCTGGAGACAGGAT +
Preference number: 5 (lower is better)
Translates to: HNVEKVVLSSPIFTVVEVSILYV*SIWRQD
Trigger: ATCCTGTCTCCAGATAGACAATACATAAAGGATAGA...AACTTCCACAACTGTAAATATTGGGCTAGATAGAACAACTTTCTCTACATTGTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000392986.8
ENST00000548884.5
ENST00000648861.1
CDS GCA 72 bp CGCGCCCATGCGGGGCTTCTTTGTTACAGGCATCTCTaGTACCTCAGTTTCTCCCTGGTAGAGAGTCTCAGC +
Preference number: 6 (lower is better)
Translates to: RAHAGLLCYRHL*YLSFSLVESLS
Trigger: GCTGAGACTCTCTACCAGGGAGAAACTGAGGTAGCAGAGATGCCTGTAACAAAGAAGCCCCGCATGGGCGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS TCA 72 bp AACAACACACAGCTCATCCCCTTTGATCCTCCCTGCTaGCGCGCCCATGCGGGGCTTCTTTGTTACAGGCAT +
Preference number: 6 (lower is better)
Translates to: NNTQLIPFDPPC*RAHAGLLCYRH
Trigger: ATGCCTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAAAGGGGATGAGCTGTGTGTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS TCA 72 bp GAGATGGACTTTCAAGGCCCTGGGAGGATTCTGGACTaGGTCTTCCTCTCCAGATCCCAGCGATTTTGCTAC +
Preference number: 6 (lower is better)
Translates to: EMDFQGPGRILD*VFLSRSQRFCY
Trigger: GTAGCAAAATCGCTGGGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548884.5
ENST00000549996.5
ENST00000648861.1
ENST00000649582.1
CDS CCA 72 bp GGATTGTTTTGGGTCAGAGATGGACTTTCAAGGCCCTaGGAGGATTCTGGACTGAGTCTTCCTCTCCAGATC +
Preference number: 6 (lower is better)
Translates to: GLFWVRDGLSRP*EDSGLSLPLQI
Trigger: GATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548884.5
ENST00000549996.5
ENST00000648861.1
ENST00000649582.1
CDS CCA 72 bp CCAGCCTGGACGACAGAGCTAAAGTTTGGATTGTTTTaGGTCAGAGATGGACTTTCAAGGCCCTGGGAGGAT +
Preference number: 6 (lower is better)
Translates to: PAWTTELKFGLF*VRDGLSRPWED
Trigger: ATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAACTTTAGCTCTGTCGTCCAGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000648861.1
ENST00000649582.1
CDS CAA 72 bp TCCAGCCTGGACGACAGAGCTAAAGTTTGGATTGTTTaGGGTCAGAGATGGACTTTCAAGGCCCTGGGAGGA +
Preference number: 6 (lower is better)
Translates to: SSLDDRAKVWIV*GQRWTFKALGG
Trigger: TCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAACTTTAGCTCTGTCGTCCAGGCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000648861.1
ENST00000649582.1
CDS CAA 90 bp CGAGGAAATCTGTGGTTGAACTTGGGGAAACTGAACATTGCTGTATaGCGAGTATGGTTCCACTTCCAGGTTCTGTCCCAGAGGACCTGC +
Preference number: 6 (lower is better)
Translates to: RGNLWLNLGKLNIAV*RVWFHFQVLSQRTC
Trigger: GCAGGTCCTCTGGGACAGAACCTGGAAGTGGAACCATACTCGCAATACAGCAATGTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 72 bp TGTCTTCTACCTCCTTGGATTGTTTTGGGTCAGAGATaGACTTTCAAGGCCCTGGGAGGATTCTGGACTGAG +
Preference number: 6 (lower is better)
Translates to: CLLPPWIVLGQR*TFKALGGFWTE
Trigger: CTCAGTCCAGAATCCTCCCAGGGCCTTGAAAGTCCATCTCTGACCCAAAACAATCCAAGGAGGTAGAAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000546380.1
ENST00000548621.2
ENST00000548884.5
ENST00000549996.5
CDS TCA 72 bp AAACACCTTTCGCGGGCTTCATACTCATCATTTCCATaGAAAATCCTGACGGCGTACAGCTGCAGTGAGGAC +
Preference number: 6 (lower is better)
Translates to: KHLSRASYSSFP*KILTAYSCSED
Trigger: GTCCTCACTGCAGCTGTACGCCGTCAGGATTTTTCATGGAAATGATGAGTATGAAGCCCGCGAAAGGTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000188403.7
ENST00000551379.5
CDS TCA 72 bp CTGCTGGGGGTAGAAACCCAGGTTGGAATAATAGGATaGCGAGGAAATCTGTGGTTGAACTTGGGGAAACTG +
Preference number: 6 (lower is better)
Translates to: LLGVETQVGIIG*RGNLWLNLGKL
Trigger: CAGTTTCCCCAAGTTCAACCACAGATTTCCTCGTCATCCTATTATTCCAACCTGGGTTTCTACCCCCAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS TCA 72 bp TTTCTCCCTGGTAGAGAGTCTCAGCTGGCATACGCCTaGGTTCATATATTCCAGGAGAGTACCACTCTTCAG +
Preference number: 6 (lower is better)
Translates to: FLPGRESQLAYA*VHIFQESTTLQ
Trigger: CTGAAGAGTGGTACTCTCCTGGAATATATGAACTCAGGCGTATGCCAGCTGAGACTCTCTACCAGGGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CCA 72 bp TGCTACCTCAGTTTCTCCCTGGTAGAGAGTCTCAGCTaGCATACGCCTGAGTTCATATATTCCAGGAGAGTA +
Preference number: 6 (lower is better)
Translates to: CYLSFSLVESLS*HTPEFIYSRRV
Trigger: TACTCTCCTGGAATATATGAACTCAGGCGTATGCCAGCTGAGACTCTCTACCAGGGAGAAACTGAGGTAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CAA 72 bp CTGTGGTTGAACTTGGGGAAACTGAACATTGCTGTATaGCGAGTATGGTTCCACTTCCAGGTTCTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: LWLNLGKLNIAV*RVWFHFQVLSQ
Trigger: CTGGGACAGAACCTGGAAGTGGAACCATACTCGCAATACAGCAATGTTCAGTTTCCCCAAGTTCAACCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS CAA 90 bp TGGGAGGATTCTGGACTGAGTCTTCCTCTCCAGATCCCAGCGATTTaGCTACAAATGCTCAGAATCCAATTTCGCATTAGGATAAGTCGG +
Preference number: 6 (lower is better)
Translates to: WEDSGLSLPLQIPAI*LQMLRIQFRIRISR
Trigger: CCGACTTATCCTAATGCGAAATTGGATTCTGAGCATTTGTAGCAAAATCGCTGGGATCTGGAGAGGAAGACTCAGTCCAGAATCCTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000649582.1
CDS TCA 72 bp CGCGGGCTTCATACTCATCATTTCCATGAAAAATCCTaGCGGCGTACAGCTGCAGTGAGGACTAATTTGAAT +
Preference number: 6 (lower is better)
Translates to: RGLHTHHFHEKS*RRTAAVRTNLN
Trigger: ATTCAAATTAGTCCTCACTGCAGCTGTACGCCGTCAGGATTTTTCATGGAAATGATGAGTATGAAGCCCGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000188403.7
ENST00000551379.5
CDS GCA 72 bp AGGAAATCTGTGGTTGAACTTGGGGAAACTGAACATTaGTGTATTGCGAGTATGGTTCCACTTCCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: RKSVVELGETEH*CIASMVPLPGS
Trigger: AGAACCTGGAAGTGGAACCATACTCGCAATACAGCAATGTTCAGTTTCCCCAAGTTCAACCACAGATTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000188403.7
ENST00000321046.9
ENST00000392986.8
ENST00000548884.5
ENST00000549996.5
ENST00000551379.5
ENST00000648861.1
CDS GCA 72 bp TTCTTATCACCTTATTTAAATAAGGCAAGTAACTTGTaGAAAGTTAAGGAATTTGTCCAAGACCACAGGGTA +
Preference number: 6 (lower is better)
Translates to: FLSPYLNKASNL*KVKEFVQDHRV
Trigger: TACCCTGTGGTCTTGGACAAATTCCTTAACTTTGCACAAGTTACTTGCCTTATTTAAATAAGGTGATAAGAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2
CDS CAA 72 bp TTCTTCTTATCACCTTATTTAAATAAGGCAAGTAACTaGTGCAAAGTTAAGGAATTTGTCCAAGACCACAGG +
Preference number: 6 (lower is better)
Translates to: FFLSPYLNKASN*CKVKEFVQDHR
Trigger: CCTGTGGTCTTGGACAAATTCCTTAACTTTGCACAAGTTACTTGCCTTATTTAAATAAGGTGATAAGAAGAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548621.2