Pregenerated sensors for NPIPB4 (Homo sapiens)
Ensembl gene IDs: ENSG00000185864Ensembl transcript IDs: ENST00000415645.6
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATTTTGTTCTACTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCCTTGGGTTCGGGAGGTaGTTCCATCTCAGCCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: ILFYSVLFLLLRLECTGLLGFGR*FHLSRP Trigger: AGGGCGGCTGAGATGGAACCACCTCCCGAACCCAAG...GAGGCCAGTGCACTCAAGCCTGAGCAATAAGAATAAAACCGAGTAGAACAAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415645.6 |
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| CDS-3UTR CCA 90 bp | ATTTTGTTCTACTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCCCTCTTGGGTTTGCGTaGTTTTTCTGCCTCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ILFYSVLFLLLRLECTGLPLGFA*FFCLSL Trigger: GAGGCTGAGGCAGAAAAACCACGCAAACCCAAGAGG...GAGGCCAGTGCACTCAAGCCTGAGCAATAAGAATAAAACCGAGTAGAACAAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000415645.6 |
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| CDS-3UTR CAA 90 bp | ATTTTGTTCTACTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTCTTATTGCTCAGGCTaGAGTGCACTGGCCTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: ILFYSVLFLLLRLECTGLSYCSG*SALASS Trigger: AGAAGAGGCCAGTGCACTCAAGCCTGAGCAATAAGA...GAGGCCAGTGCACTCAAGCCTGAGCAATAAGAATAAAACCGAGTAGAACAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415645.6 |
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| CDS-3UTR CAA 90 bp | ATTTTGTTCTACTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTGGTCAGCCAGAGTATaGATAACCTTCCTCAGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: ILFYSVLFLLLRLECTGLWSARV*ITFLRY Trigger: GTACCTGAGGAAGGTTATCAATACTCTGGCTGACCA...GAGGCCAGTGCACTCAAGCCTGAGCAATAAGAATAAAACCGAGTAGAACAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415645.6 |
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| CDS-3UTR CAA 90 bp | ATTTTGTTCTACTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTCGGTTTTATTCTTATaGCTCAGGCTTGAGTGCACT | + |
|
Preference number: 5 (lower is better) Translates to: ILFYSVLFLLLRLECTGLSVLFL*LRLECT Trigger: AGTGCACTCAAGCCTGAGCAATAAGAATAAAACCGA...GAGGCCAGTGCACTCAAGCCTGAGCAATAAGAATAAAACCGAGTAGAACAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000415645.6 |
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