Pregenerated sensors for NOTCH2NLC (Homo sapiens)
Ensembl gene IDs: ENSG00000286219Ensembl transcript IDs: ENST00000578189.1, ENST00000652191.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCGGTTTCAGGACCCAGCCTAACCACATATTAGCTGTACAACTTTaGGTGAATCACTTAACATCTCCAAACTTCAGTTACTTCATGTGG | + |
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Preference number: 1 (lower is better) Translates to: LGFRTQPNHILAVQL*VNHLTSPNFSYFMW Trigger: CCACATGAAGTAACTGAAGTTTGGAGATGTTAAGTGATTCACCCAAAGTTGTACAGCTAATATGTGGTTAGGCTGGGTCCTGAAACCGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| 3UTR CCA 90 bp | CTTTGGGTGAATCACTTAACATCTCCAAACTTCAGTTACTTCATGTaGGAAGACTTGAAAAATAATACCTGGTCCCAAGATTTTTGTGTA | + |
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Preference number: 1 (lower is better) Translates to: LWVNHLTSPNFSYFM*EDLKNNTWSQDFCV Trigger: TACACAAAAATCTTGGGACCAGGTATTATTTTTCAAGTCTTCCCACATGAAGTAACTGAAGTTTGGAGATGTTAAGTGATTCACCCAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| 3UTR-3UTR GCA 90 bp | AATTATGTGACAATGCTTTGTATAGCTGTATTCCAAATACACAGCATGGTGCCTTTTTGGAGGCAATTCTaGTTACTTAGCACATTACTC | + |
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Preference number: 2 (lower is better) Translates to: NYVTMLCIAVFQIHSMVPFWRQF*LLSTLL Trigger: GAGTAATGTGCTAAGTAAGCAGAATTGCCTCCAAAA...AGGCACCATGCTGTGTATTTGGAATACAGCTATACAAAGCATTGTCACATAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| 3UTR-3UTR CAA 90 bp | AATTATGTGACAATGCTTTGTATAGCTGTATTCCAAATACACAGCATGGTGCCTCTAGAACAACTTCTTTaGGAGGCAATTCTGCTTACT | + |
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Preference number: 3 (lower is better) Translates to: NYVTMLCIAVFQIHSMVPLEQLL*EAILLT Trigger: AGTAAGCAGAATTGCCTCCAAAAGAAGTTGTTCTAG...AGGCACCATGCTGTGTATTTGGAATACAGCTATACAAAGCATTGTCACATAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| CDS-3UTR GCA 90 bp | AGTAATTCATCTGCTTCAGCTGCTTGTATTCTGTTCCCAATCAAAATTCTTGGTAAGCACAGGCGCAAATaGCTCGACTCCCCGCGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: SNSSASAACILFPIKILGKHRRK*LDSPRP Trigger: GGGGCGCGGGGAGTCGAGGCATTTGCGCCTGTGCTT...ACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAAGCAGATGAATTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652191.1 |
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| CDS-3UTR GCA 90 bp | AATTATGTGACAATGCTTTGTATAGCTGTATTCCAAATACACAGCATGGTGCCTGCTTTGAAAATAAACTaGCTCGGTTTCAGGACCCAG | + |
|
Preference number: 4 (lower is better) Translates to: NYVTMLCIAVFQIHSMVPALKIN*LGFRTQ Trigger: CTGGGTCCTGAAACCGAGGCAGTTTATTTTCAAAGC...AGGCACCATGCTGTGTATTTGGAATACAGCTATACAAAGCATTGTCACATAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| CDS-3UTR GCA 90 bp | TCATCTGCTTCAGCTGCTTGTATTCTGTTCCCAATCAAAATTCTTGGTTTTCAGTTTTGGAGGCAATTCTaGTTACTTAGCACATTACTC | + |
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Preference number: 4 (lower is better) Translates to: SSASAACILFPIKILGFQFWRQF*LLSTLL Trigger: GAGTAATGTGCTAAGTAAGCAGAATTGCCTCCAAAA...CTGAAAACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAAGCAGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000578189.1 ENST00000652191.1 |
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| CDS-3UTR GCA 90 bp | AGTAATTCATCTGCTTCAGCTGCTTGTATTCTGTTCCCAATCAAAATTCTTGGTTTTTGGAGGCAATTCTaGTTACTTAGCACATTACTC | + |
|
Preference number: 4 (lower is better) Translates to: SNSSASAACILFPIKILGFWRQF*LLSTLL Trigger: GAGTAATGTGCTAAGTAAGCAGAATTGCCTCCAAAA...ACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAAGCAGATGAATTACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000578189.1 ENST00000652191.1 |
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| CDS-3UTR GCA 90 bp | AGTAATTCATCTGCTTCAGCTGCTTGTATTCTGTTCCCAATCAAAATTCTTGGTTTTAACAAGCTACTTTaGCTCCTGCTGACTTTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SNSSASAACILFPIKILGFNKLL*LLLTLF Trigger: AAACAAAGTCAGCAGGAGGCAAAGTAGCTTGTTAAA...ACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAAGCAGATGAATTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| CDS-3UTR CAA 90 bp | AATTATGTGACAATGCTTTGTATAGCTGTATTCCAAATACACAGCATGGTGCCTATCTGCTTCAGCTGCTaGTATTCTGTTCCCAATCAA | + |
|
Preference number: 5 (lower is better) Translates to: NYVTMLCIAVFQIHSMVPICFSC*YSVPNQ Trigger: TTGATTGGGAACAGAATACAAGCAGCTGAAGCAGAT...AGGCACCATGCTGTGTATTTGGAATACAGCTATACAAAGCATTGTCACATAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| CDS-3UTR CAA 90 bp | AGTAATTCATCTGCTTCAGCTGCTTGTATTCTGTTCCCAATCAAAATTCTTGGTATCTGCTTCAGCTGCTaGTATTCTGTTCCCAATCAA | + |
|
Preference number: 5 (lower is better) Translates to: SNSSASAACILFPIKILGICFSC*YSVPNQ Trigger: TTGATTGGGAACAGAATACAAGCAGCTGAAGCAGAT...ACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAAGCAGATGAATTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578189.1 ENST00000652191.1 |
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| CDS-3UTR CAA 90 bp | TCATCTGCTTCAGCTGCTTGTATTCTGTTCCCAATCAAAATTCTTGGTTTTCAGCTAGAACAACTTCTTTaGGAGGCAATTCTGCTTACT | + |
|
Preference number: 5 (lower is better) Translates to: SSASAACILFPIKILGFQLEQLL*EAILLT Trigger: AGTAAGCAGAATTGCCTCCAAAAGAAGTTGTTCTAG...CTGAAAACCAAGAATTTTGATTGGGAACAGAATACAAGCAGCTGAAGCAGATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000578189.1 ENST00000652191.1 |
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| CDS-3UTR CAA 90 bp | ATACTGGGCACTGTTTGTAGGTGTTTGGGTTACATCAGTAAACAAAAACAAAGACTAGAACAACTTCTTTaGGAGGCAATTCTGCTTACT | + |
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Preference number: 5 (lower is better) Translates to: ILGTVCRCLGYISKQKQRLEQLL*EAILLT Trigger: AGTAAGCAGAATTGCCTCCAAAAGAAGTTGTTCTAG...TCTTTGTTTTTGTTTACTGATGTAACCCAAACACCTACAAACAGTGCCCAGTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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| CDS CCA 90 bp | CCAAACTTCAGTTACTTCATGTGGGAAGACTTGAAAAATAATACCTaGTCCCAAGATTTTTGTGTAATTGAGCTAATAAGCATGGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: PNFSYFMWEDLKNNT*SQDFCVIELISMEV Trigger: TACTTCCATGCTTATTAGCTCAATTACACAAAAATCTTGGGACCAGGTATTATTTTTCAAGTCTTCCCACATGAAGTAACTGAAGTTTGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000578189.1 |
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