Pregenerated sensors for NMNAT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000173614Ensembl transcript IDs: ENST00000377205.6, ENST00000492735.1, ENST00000496751.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTAGGCGGAGGTTGCAGTaGGCGGAGATCGCACCACTG | + |
|
Preference number: 2 (lower is better) Translates to: LGVLALKTKLRFKLSSPFRRRLQ*AEIAPL Trigger: CAGTGGTGCGATCTCCGCTCACTGCAACCTCCGCCT...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| 3UTR-3UTR TCA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTGAAGTGCTGACATTATaGAGTTCAAACAGCACCACT | + |
|
Preference number: 2 (lower is better) Translates to: LGVLALKTKLRFKLSSPFEVLTL*SSNSTT Trigger: AGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTC...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000377205.6 ENST00000496751.1 |
||
| 3UTR-3UTR TCA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTGTGTTCAGGAAGTGCTaGCATTATGAAGTTCAAACA | + |
|
Preference number: 2 (lower is better) Translates to: LGVLALKTKLRFKLSSPFVFRKC*HYEVQT Trigger: TGTTTGAACTTCATAATGTCAGCACTTCCTGAACAC...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000377205.6 ENST00000496751.1 |
||
| 3UTR-3UTR CAA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTAGGCAGGAGAATTGCTaGAACCCGGGAGGCGGAGGT | + |
|
Preference number: 3 (lower is better) Translates to: LGVLALKTKLRFKLSSPFRQENC*NPGGGG Trigger: ACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCT...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| 3UTR-3UTR CAA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTTGGGGTTTCACCATATaGGCCAGGATGGTCTCGATC | + |
|
Preference number: 3 (lower is better) Translates to: LGVLALKTKLRFKLSSPFWGFTI*ARMVSI Trigger: GATCGAGACCATCCTGGCCAATATGGTGAAACCCCA...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| 3UTR-3UTR CAA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTCCTCATCTGTATGATTaGAGGCTCCAGCCTTTCACT | + |
|
Preference number: 3 (lower is better) Translates to: LGVLALKTKLRFKLSSPFPHLYD*RLQPFT Trigger: AGTGAAAGGCTGGAGCCTCAAATCATACAGATGAGG...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGGATCTCTTGACCCCGTaGTCCACCTGCCTCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWDLLTP*STCLSL Trigger: GAGGCTGAGGCAGGTGGATCACGGGGTCAAGAGATC...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGATGGTCTCGATCTCTTaGCCCCGTGATCCACCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWMVSIS*PRDPPA Trigger: GGCAGGTGGATCACGGGGTCAAGAGATCGAGACCAT...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGGCAGTGGCACAACCTTaGCTCACTGGAACCTGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWAVAQP*LTGTCA Trigger: GGCACAGGTTCCAGTGAGCCAAGGTTGTGCCACTGC...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CCA 90 bp | CTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTATACCAGTCGCAACCTCCACCACCTaGGGTCAAGTGATTCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LALKTKLRFKLSSPFIPVATSTT*GQVILL Trigger: CAGGAGAATCACTTGACCCCAGGTGGTGGAGGTTGC...GACTGGTATAAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | CTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTATACCAGTCCTGGTCTTGAACTCTTaGCCTCACGTGATCCACCCA | + |
|
Preference number: 4 (lower is better) Translates to: LALKTKLRFKLSSPFIPVLVLNS*PHVIHP Trigger: TGGGTGGATCACGTGAGGTCAAGAGTTCAAGACCAG...GACTGGTATAAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGGCCTCCAATTTCTCTTaGTGGTGTCTTAGCACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWASNFS*WCLSTF Trigger: GAAGGTGCTAAGACACCATCAAGAGAAATTGGAGGC...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGAGCCTCCCAAGTAGCTaGGATTATAGTTATGCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWSLPSS*DYSYAA Trigger: TGCCGCATAACTATAATCCCAGCTACTTGGGAGGCT...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTCTCATCTGTATGATTTaGGGCTCCAGCCTTTCACTA | + |
|
Preference number: 4 (lower is better) Translates to: LGVLALKTKLRFKLSSPFLICMI*GSSLSL Trigger: TAGTGAAAGGCTGGAGCCTCAAATCATACAGATGAG...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTTCTCCATCATCCGAATaGAGATGCCAATCAAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: LGVLALKTKLRFKLSSPFSPSSE*RCQSRT Trigger: AGTCCTTGATTGGCATCTTCATTCGGATGATGGAGA...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR TCA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTTTTGCCGTTTCCTTATaGTATAAGGCACTCAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LGVLALKTKLRFKLSSPFFAVSL*YKALRS Trigger: GCTCCTGAGTGCCTTATATCATAAGGAAACGGCAAA...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000377205.6 ENST00000496751.1 |
||
| CDS-3UTR TCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGGAAGTGCTGACATTATaGAGTTCAAACAGCACCACT | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWEVLTL*SSNSTT Trigger: AGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTC...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377205.6 ENST00000496751.1 |
||
| CDS-3UTR TCA 90 bp | CTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTATACCAGTCGTGTTCAGGAAGTGCTaGCATTATGAAGTTCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: LALKTKLRFKLSSPFIPVVFRKC*HYEVQT Trigger: TGTTTGAACTTCATAATGTCAGCACTTCCTGAACAC...GACTGGTATAAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377205.6 ENST00000496751.1 |
||
| CDS-3UTR GCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGGCATTGGAAACTTTCTaGAGTTTACGTGACACTTCA | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWALETF*SLRDTS Trigger: TGAAGTGTCACGTAAACTGCAGAAAGTTTCCAATGC...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR GCA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGATCAAGGACTTTTACTaGAGGTTTGTTTGCCACTTT | + |
|
Preference number: 4 (lower is better) Translates to: HSKCSGSADIMKFKQHHWIKDFY*RFVCHF Trigger: AAAGTGGCAAACAAACCTGCAGTAAAAGTCCTTGAT...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CAA 90 bp | CTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTATACCAGTCACTGTGACACCTCCCTaGTTGTCGCGCCCTCACTGT | + |
|
Preference number: 5 (lower is better) Translates to: LALKTKLRFKLSSPFIPVTVTPP*LSRPHC Trigger: ACAGTGAGGGCGCGACAACAAGGGAGGTGTCACAGT...GACTGGTATAAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CAA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTTGCAGTGGCACAACCTaGGCTCACTGGAACCTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: LGVLALKTKLRFKLSSPFCSGTT*AHWNLC Trigger: GCACAGGTTCCAGTGAGCCAAGGTTGTGCCACTGCA...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CAA 90 bp | CACAGTAAGTGTTCAGGAAGTGCTGACATTATGAAGTTCAAACAGCACCACTGGTGGGGTTTCACCATATaGGCCAGGATGGTCTCGATC | + |
|
Preference number: 5 (lower is better) Translates to: HSKCSGSADIMKFKQHHWWGFTI*ARMVSI Trigger: GATCGAGACCATCCTGGCCAATATGGTGAAACCCCA...CCAGTGGTGCTGTTTGAACTTCATAATGTCAGCACTTCCTGAACACTTACTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CAA 90 bp | TTAGGGGTACTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTGGAGAGATGATGCCTTaGACAACTGTGTACCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: LGVLALKTKLRFKLSSPFGEMMP*TTVYLP Trigger: AGGAAGGTACACAGTTGTCAAAGGCATCATCTCTCC...AAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAGTACCCCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS-3UTR CAA 90 bp | CTGGCTCTGAAGACAAAGCTTAGATTCAAGCTCAGCTCACCATTTATACCAGTCCCTCATCTGTATGATTaGAGGCTCCAGCCTTTCACT | + |
|
Preference number: 5 (lower is better) Translates to: LALKTKLRFKLSSPFIPVPHLYD*RLQPFT Trigger: AGTGAAAGGCTGGAGCCTCAAATCATACAGATGAGG...GACTGGTATAAATGGTGAGCTGAGCTTGAATCTAAGCTTTGTCTTCAGAGCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377205.6 |
||
| CDS CAA 72 bp | ACTGCACCCGGCTGGTTCTCTAGTCTTAAGCCACTTTaGGTTACTGCTCCTACCTGTTCCATTCATGTAGTC | + |
|
Preference number: 6 (lower is better) Translates to: TAPGWFSSLKPL*VTAPTCSIHVV Trigger: GACTACATGAATGGAACAGGTAGGAGCAGTAACCAAAAGTGGCTTAAGACTAGAGAACCAGCCGGGTGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492735.1 |
||