Pregenerated sensors for NKX2-4 (Homo sapiens)
Ensembl gene IDs: ENSG00000125816Ensembl transcript IDs: ENST00000351817.5
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGCAAGAGGTTCACAGCCTGCTCCTCTCTGAGACCGGTTCGTTTTaGATCGCAGTTTACACGCGCGAGTCGGTTTTCGCATGCCTCCCC | + |
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Preference number: 1 (lower is better) Translates to: QQEVHSLLLSETGSF*IAVYTRESVFACLP Trigger: GGGGAGGCATGCGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGAGGAGCAGGCTGTGAACCTCTTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR-3UTR GCA 90 bp | CCGGTTCGTTTTGAATCGCAGTTTACACGCGCGAGTCGGTTTTCGCATGCCTCCGTTCTAGCAGTTTCTTaGAGACCCTTCGGGTGCACC | + |
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Preference number: 2 (lower is better) Translates to: PVRFESQFTRASRFSHASVLAVS*RPFGCT Trigger: GGTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAAC...GGAGGCATGCGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR-3UTR GCA 90 bp | CGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTGGCAAAGAGGTTCACAGCCTaGTCCTCTCTGAGACCGGTT | + |
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Preference number: 2 (lower is better) Translates to: RHLRTSRRRKSPPQSLVAKRFTA*SSLRPV Trigger: AACCGGTCTCAGAGAGGAGCAGGCTGTGAACCTCTT...TGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR-3UTR TCA 90 bp | GGACTGATTGTTAAAGCTGGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTGAGACCGGTTCGTTTTaGATCGCAGTTTACACGCGC | + |
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Preference number: 2 (lower is better) Translates to: GLIVKAGLIFIVTNANKVETGSF*IAVYTR Trigger: GCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTC...AACTTTGTTGGCGTTTGTAACTATAAAAATCAACCCAGCTTTAACAATCAGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR TCA 72 bp | CCGCCCCCAGCAAGAGGTTCACAGCCTGCTCCTCTCTaGGACCGGTTCGTTTTGAATCGCAGTTTACACGCG | + |
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Preference number: 3 (lower is better) Translates to: PPPARGSQPAPL*DRFVLNRSLHA Trigger: CGCGTGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGAGGAGCAGGCTGTGAACCTCTTGCTGGGGGCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR TCA 72 bp | GTTCACAGCCTGCTCCTCTCTGAGACCGGTTCGTTTTaGATCGCAGTTTACACGCGCGAGTCGGTTTTCGCA | + |
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Preference number: 3 (lower is better) Translates to: VHSLLLSETGSF*IAVYTRESVFA Trigger: TGCGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGAGGAGCAGGCTGTGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR CCA 72 bp | CTTCTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTaGCATAATGTTACACTACTCGGTTTCCGGGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: LLGGENHHLKAS*HNVTLLGFRAV Trigger: GACAGCCCGGAAACCGAGTAGTGTAACATTATGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR-3UTR CAA 90 bp | CAAACATTAATGAAATTGCACTTAGGGGGCCCTTCGAAAATTAATCTCCCAAGACGTTCTAGCAGTTTCTaGCAGACCCTTCGGGTGCAC | + |
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Preference number: 3 (lower is better) Translates to: QTLMKLHLGGPSKINLPRRSSSF*QTLRVH Trigger: GTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAACG...TCTTGGGAGATTAATTTTCGAAGGGCCCCCTAAGTGCAATTTCATTAATGTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | CCTCGTGGCATAATGTTACACTACTCGGTTTCCGGGCTGTCGCTGTCCCCCGCCGCCGTGCAGCGCGGGTaGGCTGGGCGACAGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: PRGIMLHYSVSGLSLSPAAVQRG*AGRQLL Trigger: GAGGAGCTGTCGCCCAGCCCACCCGCGCTGCACGGC...GGCGGGGGACAGCGACAGCCCGGAAACCGAGTAGTGTAACATTATGCCACGAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | ACACGCGCGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCGGCAGCTGAGCCTGTaGCGAGGAGTCGGCGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: TRASRFSHASPIRSSSFLRQLSL*RGVGGS Trigger: CGAGCCGCCGACTCCTCGTCACAGGCTCAGCTGCCG...CAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACCGACTCGCGCGTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTGCCCAGGCCGCCGTTaGAGTAGCTGCCCATGGCGC | + |
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Preference number: 4 (lower is better) Translates to: RVGFRMPPPSVLAVSCRPCPGRR*SSCPWR Trigger: GCGCCATGGGCAGCTACTGCAACGGCGGCCTGGGCA...GGGTCTGCAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACCGACTCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | ACACGCGCGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGACGGCTTGCCGTCCTTaGCCAGCACAGGCACCGCCA | + |
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Preference number: 4 (lower is better) Translates to: TRASRFSHASPIRSSSFLTACRP*PAQAPP Trigger: TGGCGGTGCCTGTGCTGGTCAAGGACGGCAAGCCGT...CAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACCGACTCGCGCGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | TTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTTCGGGTGCGTGAGAAGGCTGCATaGCCGCCACGGTCGCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: FSHASPIRSSSFLQTLRVREKAA*PPRSPP Trigger: AGGCGGCGACCGTGGCGGGCATGCAGCCTTCTCACG...CACCCGAAGGGTCTGCAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CCGGTTCGTTTTGAATCGCAGTTTACACGCGCGAGTCGGTTTTCGCATGCCTCCCGGTCAGCGACCCCATaGCGGCCACATTCACGCCCG | + |
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Preference number: 4 (lower is better) Translates to: PVRFESQFTRASRFSHASRSATP*RPHSRP Trigger: CGGGCGTGAATGTGGCCGGCATGGGGTCGCTGACCG...GGAGGCATGCGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTCCTGCTGCAGCTGCTaGGCCGCCTTGTCCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: RVGFRMPPPSVLAVSCRPSCCSC*AALSLA Trigger: GGCCAAGGACAAGGCGGCGCAGCAGCTGCAGCAGGA...GGGTCTGCAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACCGACTCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | TCTCTGAGACCGGTTCGTTTTGAATCGCAGTTTACACGCGCGAGTCGGTTTTCGAGGCCGCCCTCCTGCTaGAGCTGCTGCGCCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SLRPVRFESQFTRASRFSRPPSC*SCCAAL Trigger: CAAGGCGGCGCAGCAGCTGCAGCAGGAGGGCGGCCT...CGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | AGGTTCACAGCCTGCTCCTCTCTGAGACCGGTTCGTTTTGAATCGCAGTTTACACTGCCCATGGCGCCGTaGGGGAACTGCGAGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: RFTACSSLRPVRFESQFTLPMAP*GNCETP Trigger: CGGCGTCTCGCAGTTCCCGCACGGCGCCATGGGCAG...TGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGAGGAGCAGGCTGTGAACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | AATCGCAGTTTACACGCGCGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTACGTTGTGACCCGCCATaGCGTGAGAAGGCTGCATGC | + |
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Preference number: 4 (lower is better) Translates to: NRSLHARVGFRMPPPSVLRCDPP*REKAAC Trigger: GCATGCAGCCTTCTCACGCCATGGCGGGTCACAACG...TAGAACGGATGGGGGAGGCATGCGAAAACCGACTCGCGCGTGTAAACTGCGATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | GGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTTCGGGGAGAAGGGCGTCGTGTaGTTTGGGCTCAACGACATG | + |
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Preference number: 4 (lower is better) Translates to: GFRMPPPSVLAVSCRPFGEKGVV*FGLNDM Trigger: CATGTCGTTGAGCCCAAAGCACACGACGCCCTTCTC...CCCGAAGGGTCTGCAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTGGCATAATGTTACACTACTCTGGCGGCGTCCGCGATaGCGGTCAGCGACCCCATGC | + |
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Preference number: 4 (lower is better) Translates to: LGGENHHLKASWHNVTLLWRRPR*RSATPC Trigger: GCATGGGGTCGCTGACCGGCATCGCGGACGCCGCCA...GAGTAGTGTAACATTATGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | TCTCTGAGACCGGTTCGTTTTGAATCGCAGTTTACACGCGCGAGTCGGTTTTCGTTGGGCTCAACGACATaGCTCGGCGGGCAGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SLRPVRFESQFTRASRFSLGSTT*LGGQPG Trigger: ACCTGGCTGCCCGCCGAGCCATGTCGTTGAGCCCAA...CGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | TCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTTCGGGTGCACCAGGACCTATGTAGGTCTCCTCGATaGGGCTCAGGATGTCGGACA | + |
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Preference number: 4 (lower is better) Translates to: SPIRSSSFLQTLRVHQDLCRSPR*GSGCRT Trigger: TGTCCGACATCCTGAGCCCCATCGAGGAGACCTACA...TAGGTCCTGGTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAACGGATGGGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | TCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTTCGGGTGCACCAGGACCTAGAGACCGGTTCGTTTTaGATCGCAGTTTACACGCGC | + |
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Preference number: 4 (lower is better) Translates to: SPIRSSSFLQTLRVHQDLETGSF*IAVYTR Trigger: GCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTC...TAGGTCCTGGTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAACGGATGGGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | ACACGCGCGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGCCTGCTCCTCTCTaGGACCGGTTCGTTTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: TRASRFSHASPIRSSSFLQPAPL*DRFVLN Trigger: ATTCAAAACGAACCGGTCTCAGAGAGGAGCAGGCTG...CAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACCGACTCGCGCGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CGAGTCGGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCGTTCTAGCAGTTTCTTaGAGACCCTTCGGGTGCACC | + |
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Preference number: 4 (lower is better) Translates to: RVGFRMPPPSVLAVSCRPVLAVS*RPFGCT Trigger: GGTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAAC...GGGTCTGCAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACCGACTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | GGTTTTCGCATGCCTCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTTCGGGAAGAGGTTCACAGCCTaGTCCTCTCTGAGACCGGTT | + |
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Preference number: 4 (lower is better) Translates to: GFRMPPPSVLAVSCRPFGKRFTA*SSLRPV Trigger: AACCGGTCTCAGAGAGGAGCAGGCTGTGAACCTCTT...CCCGAAGGGTCTGCAAGAAACTGCTAGAACGGATGGGGGAGGCATGCGAAAACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTGGCACCCTCCTGCTGCAGCTaGTGCGCCGCCTTGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: RHLRTSRRRKSPPQSLVAPSCCS*CAALSL Trigger: CAAGGACAAGGCGGCGCAGCAGCTGCAGCAGGAGGG...TGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | ACCTTTTCGCGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCCGCCGTTGCAGTAGCTaGCCATGGCGCCGTGCGGGA | + |
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Preference number: 4 (lower is better) Translates to: TFSRHLRTSRRRKSPPQSRRCSS*PWRRAG Trigger: TCCCGCACGGCGCCATGGGCAGCTACTGCAACGGCG...GCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACGCGAAAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | CAAACATTAATGAAATTGCACTTAGGGGGCCCTTCGAAAATTAATCTCCCAAGACTCCTCCAGCTCAGGTaGTGGCGTCGGGGCCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: QTLMKLHLGGPSKINLPRLLQLR*WRRGRR Trigger: CCGCCGGCCCCGACGCCAGCACCTGAGCTGGAGGAG...TCTTGGGAGATTAATTTTCGAAGGGCCCCCTAAGTGCAATTTCATTAATGTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | CAAACATTAATGAAATTGCACTTAGGGGGCCCTTCGAAAATTAATCTCCCAAGACGGGGGTGGGCGTGCTaGCGCCGTTCTGGCACGGCT | + |
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Preference number: 4 (lower is better) Translates to: QTLMKLHLGGPSKINLPRRGWAC*RRSGTA Trigger: AGCCGTGCCAGAACGGCGCCAGCACGCCCACCCCCG...TCTTGGGAGATTAATTTTCGAAGGGCCCCCTAAGTGCAATTTCATTAATGTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR GCA 90 bp | GGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTTCCAACTTTGAGAGCTGTGCGCCGTGCGGGAACTaGGAGACGCCGGGCGGCATG | + |
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Preference number: 4 (lower is better) Translates to: GLIFIVTNANKVSNFESCAPCGN*ETPGGM Trigger: CATGCCGCCCGGCGTCTCGCAGTTCCCGCACGGCGC...ACAGCTCTCAAAGTTGGAAACTTTGTTGGCGTTTGTAACTATAAAAATCAACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | GGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTTCCAACTTTGAGAGCTGTCTCCAGCTCAGGTGCTaGCGTCGGGGCCGGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GLIFIVTNANKVSNFESCLQLRC*RRGRRL Trigger: CAGCCGCCGGCCCCGACGCCAGCACCTGAGCTGGAG...ACAGCTCTCAAAGTTGGAAACTTTGTTGGCGTTTGTAACTATAAAAATCAACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | ACCTTTTCGCGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCCCGCCGACGGCCCCATaGACCTGGAGATTGACGAGT | + |
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Preference number: 4 (lower is better) Translates to: TFSRHLRTSRRRKSPPQSPPTAP*TWRLTS Trigger: ACTCGTCAATCTCCAGGTTCATGGGGCCGTCGGCGG...GCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACGCGAAAAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | CTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTGGCATAATGTTACACTACTCGCGCCGCCTTGTCCTTaGCCTGCCGTTTCATCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LGGENHHLKASWHNVTLLAPPCP*PAVSSC Trigger: ACAAGATGAAACGGCAGGCCAAGGACAAGGCGGCGC...GAGTAGTGTAACATTATGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | CAAACATTAATGAAATTGCACTTAGGGGGCCCTTCGAAAATTAATCTCCCAAGAGTGCTGGCGCCGTTCTaGCACGGCTTGCCGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: QTLMKLHLGGPSKINLPRVLAPF*HGLPSL Trigger: CAAGGACGGCAAGCCGTGCCAGAACGGCGCCAGCAC...TCTTGGGAGATTAATTTTCGAAGGGCCCCCTAAGTGCAATTTCATTAATGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | GGACTGATTGTTAAAGCTGGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTGCAGCGCGGGTGGGCTaGGCGACAGCTCCTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GLIVKAGLIFIVTNANKVAARVG*ATAPPA Trigger: AGCTGGAGGAGCTGTCGCCCAGCCCACCCGCGCTGC...AACTTTGTTGGCGTTTGTAACTATAAAAATCAACCCAGCTTTAACAATCAGTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | GGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTTCCAACTTTGAGAGCTGTTGCCATAGAGCAGGTTaGCGCCCAGGACGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: GLIFIVTNANKVSNFESCCHRAG*RPGRRR Trigger: GCGGCGGCGTCCTGGGCGCCAACCTGCTCTATGGCA...ACAGCTCTCAAAGTTGGAAACTTTGTTGGCGTTTGTAACTATAAAAATCAACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | TTCAATCAAACATTAATGAAATTGCACTTAGGGGGCCCTTCGAAAATTAATCTCTGCAGTAGCTGCCCATaGCGCCGTGCGGGAACTGCG | + |
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Preference number: 4 (lower is better) Translates to: FNQTLMKLHLGGPSKINLCSSCP*RRAGTA Trigger: CGCAGTTCCCGCACGGCGCCATGGGCAGCTACTGCA...GAGATTAATTTTCGAAGGGCCCCCTAAGTGCAATTTCATTAATGTTTGATTGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CCA 90 bp | CGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTGGCACACCTCAAAGCCTCGTaGCATAATGTTACACTACTC | + |
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Preference number: 4 (lower is better) Translates to: RHLRTSRRRKSPPQSLVAHLKAS*HNVTLL Trigger: GAGTAGTGTAACATTATGCCACGAGGCTTTGAGGTG...TGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | GGACTGATTGTTAAAGCTGGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTCGTCCATGGCGCCGCTaGACTTCTTGTAGGTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GLIVKAGLIFIVTNANKVRPWRR*TSCRSP Trigger: AGGAGACCTACAAGAAGTTCAGCGGCGCCATGGACG...AACTTTGTTGGCGTTTGTAACTATAAAAATCAACCCAGCTTTAACAATCAGTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | ACCTTTTCGCGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCGTTAAGAATGCCGTGTaGACTTCTCCACCTTTTCGC | + |
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Preference number: 4 (lower is better) Translates to: TFSRHLRTSRRRKSPPQSVKNAV*TSPPFR Trigger: GCGAAAAGGTGGAGAAGTTCACACGGCATTCTTAAC...GCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACGCGAAAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | CGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCCTCGTGGCAGTGTATGATCCACCTTaGGCTACACTTCAATTTACT | + |
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Preference number: 4 (lower is better) Translates to: RHLRTSRRRKSPPQSLVAVYDPP*ATLQFT Trigger: AGTAAATTGAAGTGTAGCTCAAGGTGGATCATACAC...TGCCACGAGGCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR TCA 90 bp | ACCTTTTCGCGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCATGTTGCTATGTGTATaGTCCACCTTGAGCTACACT | + |
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Preference number: 4 (lower is better) Translates to: TFSRHLRTSRRRKSPPQSMLLCV*STLSYT Trigger: AGTGTAGCTCAAGGTGGATCATACACATAGCAACAT...GCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACGCGAAAAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| 3UTR CAA 72 bp | ATTCCACTTCAAAAAGGACTGATTGTTAAAGCTGGGTaGATTTTTATAGTTACAAACGCCAACAAAGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: IPLQKGLIVKAG*IFIVTNANKVS Trigger: GGAAACTTTGTTGGCGTTTGTAACTATAAAAATCAACCCAGCTTTAACAATCAGTCCTTTTTGAAGTGGAAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 90 bp | GCCGTGCAGCGCGGGTGGGCTGGGCGACAGCTCCTCCAGCTCAGGTaGTGGCGTCGGGGCCGGCGGCTGCGGACCGGCCTGGCCGGGGGT | + |
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Preference number: 5 (lower is better) Translates to: AVQRGWAGRQLLQLR*WRRGRRLRTGLAGG Trigger: ACCCCCGGCCAGGCCGGTCCGCAGCCGCCGGCCCCGACGCCAGCACCTGAGCTGGAGGAGCTGTCGCCCAGCCCACCCGCGCTGCACGGC 80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS CCA 90 bp | GTGCAGCGCGGGTGGGCTGGGCGACAGCTCCTCCAGCTCAGGTGCTaGCGTCGGGGCCGGCGGCTGCGGACCGGCCTGGCCGGGGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: VQRGWAGRQLLQLRC*RRGRRLRTGLAGGG Trigger: CCCACCCCCGGCCAGGCCGGTCCGCAGCCGCCGGCCCCGACGCCAGCACCTGAGCTGGAGGAGCTGTCGCCCAGCCCACCCGCGCTGCAC 80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS CCA 90 bp | TCCAGCTCAGGTGCTGGCGTCGGGGCCGGCGGCTGCGGACCGGCCTaGCCGGGGGTGGGCGTGCTGGCGCCGTTCTGGCACGGCTTGCCG | + |
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Preference number: 5 (lower is better) Translates to: SSSGAGVGAGGCGPA*PGVGVLAPFWHGLP Trigger: CGGCAAGCCGTGCCAGAACGGCGCCAGCACGCCCACCCCCGGCCAGGCCGGTCCGCAGCCGCCGGCCCCGACGCCAGCACCTGAGCTGGA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 90 bp | CCGCCGCCGCGTGCAGCGGGCCCAGCGACTTGGCGGCGTCCGCGATaGCGGTCAGCGACCCCATGCCGGCCACATTCACGCCCGCCGACG | + |
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Preference number: 5 (lower is better) Translates to: PPPRAAGPATWRRPR*RSATPCRPHSRPPT Trigger: CGTCGGCGGGCGTGAATGTGGCCGGCATGGGGTCGCTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGGCCCGCTGCACGCGGCGGCGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 90 bp | CGCGGGGACGGCGGCGGAGGCGGCGGCGGGCCCAGGCCGCCCTCCTaGTGCAGCTGCTGCGCCGCCTTGTCCTTGGCCTGCCGTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: RGDGGGGGGGPRPPS*CSCCAALSLACRFI Trigger: GATGAAACGGCAGGCCAAGGACAAGGCGGCGCAGCAGCTGCAGCAGGAGGGCGGCCTGGGCCCGCCGCCGCCTCCGCCGCCGTCCCCGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS CCA 90 bp | CAGCTGCTGCCGCCGCCGCCGCGGCCGCCGCGTTGTGACCCGCCATaGCGTGAGAAGGCTGCATGCCCGCCACGGTCGCCGCCTGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: QLLPPPPRPPRCDPP*REKAACPPRSPPAR Trigger: CCTCGCAGGCGGCGACCGTGGCGGGCATGCAGCCTTCTCACGCCATGGCGGGTCACAACGCGGCGGCCGCGGCGGCGGCGGCAGCAGCTG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CAA 90 bp | TCCCCCATCCGTTCTAGCAGTTTCTTGCAGACCCTTCGGGTGCACCAGGACCTACGTTCTAGCAGTTTCTaGCAGACCCTTCGGGTGCAC | + |
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Preference number: 5 (lower is better) Translates to: SPIRSSSFLQTLRVHQDLRSSSF*QTLRVH Trigger: GTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAACG...TAGGTCCTGGTGCACCCGAAGGGTCTGCAAGAAACTGCTAGAACGGATGGGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CAA 90 bp | AGGTTCACAGCCTGCTCCTCTCTGAGACCGGTTCGTTTTGAATCGCAGTTTACACCGTTCTGGCACGGCTaGCCGTCCTTGACCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: RFTACSSLRPVRFESQFTPFWHG*PSLTST Trigger: TGTGCTGGTCAAGGACGGCAAGCCGTGCCAGAACGG...TGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGAGGAGCAGGCTGTGAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CAA 90 bp | GGACTGATTGTTAAAGCTGGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTGGCAGCTCGCCCATGTaGCCCAGGCCGCCGTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: GLIVKAGLIFIVTNANKVGSSPM*PRPPLQ Trigger: CTGCAACGGCGGCCTGGGCAACATGGGCGAGCTGCC...AACTTTGTTGGCGTTTGTAACTATAAAAATCAACCCAGCTTTAACAATCAGTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CAA 90 bp | ACCTTTTCGCGTCATTTAAGAACTTCTAGGAGGAGAAAATCACCACCTCAAAGCTGCGCCGCCTTGTCCTaGGCCTGCCGTTTCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: TFSRHLRTSRRRKSPPQSCAALS*ACRFIL Trigger: CAAGATGAAACGGCAGGCCAAGGACAAGGCGGCGCA...GCTTTGAGGTGGTGATTTTCTCCTCCTAGAAGTTCTTAAATGACGCGAAAAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CAA 90 bp | TCTCTGAGACCGGTTCGTTTTGAATCGCAGTTTACACGCGCGAGTCGGTTTTCGCAAACATTAATGAAATaGCACTTAGGGGGCCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: SLRPVRFESQFTRASRFSQTLMK*HLGGPS Trigger: CGAAGGGCCCCCTAAGTGCAATTTCATTAATGTTTG...CGAAAACCGACTCGCGCGTGTAAACTGCGATTCAAAACGAACCGGTCTCAGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS-3UTR CAA 90 bp | GGACTGATTGTTAAAGCTGGGTTGATTTTTATAGTTACAAACGCCAACAAAGTTAGCTGCTGCGCCGCCTaGTCCTTGGCCTGCCGTTTC | + |
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Preference number: 5 (lower is better) Translates to: GLIVKAGLIFIVTNANKVSCCAA*SLACRF Trigger: GAAACGGCAGGCCAAGGACAAGGCGGCGCAGCAGCT...AACTTTGTTGGCGTTTGTAACTATAAAAATCAACCCAGCTTTAACAATCAGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 72 bp | CGCGGGTGGGCTGGGCGACAGCTCCTCCAGCTCAGGTaGTGGCGTCGGGGCCGGCGGCTGCGGACCGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: RGWAGRQLLQLR*WRRGRRLRTGL Trigger: CAGGCCGGTCCGCAGCCGCCGGCCCCGACGCCAGCACCTGAGCTGGAGGAGCTGTCGCCCAGCCCACCCGCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS CCA 72 bp | CCGCCGCCGCCGCGGCCGCCGCGTTGTGACCCGCCATaGCGTGAGAAGGCTGCATGCCCGCCACGGTCGCCG | + |
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Preference number: 6 (lower is better) Translates to: PPPPRPPRCDPP*REKAACPPRSP Trigger: CGGCGACCGTGGCGGGCATGCAGCCTTCTCACGCCATGGCGGGTCACAACGCGGCGGCCGCGGCGGCGGCGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 72 bp | CCGCGTTGTGACCCGCCATGGCGTGAGAAGGCTGCATaGCCGCCACGGTCGCCGCCTGCGAGGAGGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PRCDPPWREKAA*PPRSPPARRAQ Trigger: CTGGGCCCTCCTCGCAGGCGGCGACCGTGGCGGGCATGCAGCCTTCTCACGCCATGGCGGGTCACAACGCGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 72 bp | CGTGCAGCGGGCCCAGCGACTTGGCGGCGTCCGCGATaGCGGTCAGCGACCCCATGCCGGCCACATTCACGC | + |
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Preference number: 6 (lower is better) Translates to: RAAGPATWRRPR*RSATPCRPHSR Trigger: GCGTGAATGTGGCCGGCATGGGGTCGCTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGGCCCGCTGCACG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS TCA 72 bp | CCCCCAGGCCGGGTGGCGCGCCGTCCATGGCGCCGCTaGACTTCTTGTAGGTCTCCTCGATGGGGCTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PPGRVARRPWRR*TSCRSPRWGSG Trigger: TCCTGAGCCCCATCGAGGAGACCTACAAGAAGTTCAGCGGCGCCATGGACGGCGCGCCACCCGGCCTGGGGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS TCA 72 bp | CCATGCCGGCCACATTCACGCCCGCCGACGGCCCCATaGACCTGGAGATTGACGAGTAGCGTGGGTCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: PCRPHSRPPTAP*TWRLTSSVGPG Trigger: ACCCGGACCCACGCTACTCGTCAATCTCCAGGTTCATGGGGCCGTCGGCGGGCGTGAATGTGGCCGGCATGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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| CDS GCA 72 bp | GGGCTCAGGATGTCGGACACGGAGAAGGGCGTCGTGTaGTTTGGGCTCAACGACATGGCTCGGCGGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GLRMSDTEKGVV*FGLNDMARRAA Trigger: GGCTGCCCGCCGAGCCATGTCGTTGAGCCCAAAGCACACGACGCCCTTCTCCGTGTCCGACATCCTGAGCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351817.5 |
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