Pregenerated sensors for NKX2-2 (Homo sapiens)
Ensembl gene IDs: ENSG00000125820Ensembl transcript IDs: ENST00000377142.5
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGCTTTCTGCGCCCGGCGCTGTTGGGGAACCGCGCCGAATAGCTaGGCTCCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: KAFCARRCWGTAPNS*APSSGLKARRTGQR Trigger: CCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGGAGCTCAGCTATTCGGCGCGGTTCCCCAACAGCGCCGGGCGCAGAAAGCTTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR TCA 90 bp | GCCACAAAGAAAGGAGTTGGACCCAGACGGGAAACAGGCCGGTCCTaGAGGTCATTTTGGCAACAATCACCACCGATATTTACAACGAAA | + |
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Preference number: 1 (lower is better) Translates to: ATKKGVGPRRETGRS*RSFWQQSPPIFTTK Trigger: TTTCGTTGTAAATATCGGTGGTGATTGTTGCCAAAATGACCTTCAGGACCGGCCTGTTTCCCGTCTGGGTCCAACTCCTTTCTTTGTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR-3UTR CCA 90 bp | CCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGGGCTCCCTGCCTACAGGCAGAGCTGGGTGGGTaGAATCTGCCACTCCAAGGA | + |
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Preference number: 2 (lower is better) Translates to: PSSGLKARRTGQRAPCLQAELGG*NLPLQG Trigger: TCCTTGGAGTGGCAGATTCCACCCACCCAGCTCTGC...CTGTAGGCAGGGAGCCCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR-3UTR CCA 90 bp | CCGATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGTGGGGCCTGGGCCTaGGGCCGCGAGTCTCGTTGG | + |
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Preference number: 2 (lower is better) Translates to: PIFTTKSEICHQLSERLHGGAWA*GRESRW Trigger: CCAACGAGACTCGCGGCCCCAGGCCCAGGCCCCACC...ATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR CAA 90 bp | AGGAGTTGGACCCAGACGGGAAACAGGCCGGTCCTGAAGGTCATTTaGGCAACAATCACCACCGATATTTACAACGAAAAGCGAAATCTG | + |
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Preference number: 2 (lower is better) Translates to: RSWTQTGNRPVLKVI*ATITTDIYNEKRNL Trigger: CAGATTTCGCTTTTCGTTGTAAATATCGGTGGTGATTGTTGCCAAAATGACCTTCAGGACCGGCCTGTTTCCCGTCTGGGTCCAACTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR-3UTR CCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATATGGGCAGAGCTGGGTaGGTGGAATCTGCCACTCCA | + |
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Preference number: 2 (lower is better) Translates to: FTTKSEICHQLSERLHGHMGRAG*VESATP Trigger: TGGAGTGGCAGATTCCACCCACCCAGCTCTGCCCAT...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR-3UTR CCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGAGGCATGGGCAGAGCTaGGTGGGTGGAATCTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWRHGQS*VGGICH Trigger: GTGGCAGATTCCACCCACCCAGCTCTGCCCATGCCT...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR-3UTR GCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGTGGGTGGGTGGAATCTaGCACTCCAAGGAGACGCAG | + |
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Preference number: 2 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWWVGGI*HSKETQ Trigger: CTGCGTCTCCTTGGAGTGGCAGATTCCACCCACCCA...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR-3UTR GCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGAAAGTGTTCTCCACTTaGTTTAGAAGACGGCTGACA | + |
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Preference number: 2 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWKVFST*FRRRLT Trigger: TGTCAGCCGTCTTCTAAAGCAAGTGGAGAACACTTT...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR TCA 72 bp | TGCGCCCGGCGCTGTTGGGGAACCGCGCCGAATAGCTaGGCTCCAAGTTCGGGGCTGAAGGCCCGGAGGACA | + |
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Preference number: 3 (lower is better) Translates to: CARRCWGTAPNS*APSSGLKARRT Trigger: TGTCCTCCGGGCCTTCAGCCCCGAACTTGGAGCTCAGCTATTCGGCGCGGTTCCCCAACAGCGCCGGGCGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR TCA 72 bp | AAAGGAGTTGGACCCAGACGGGAAACAGGCCGGTCCTaGAGGTCATTTTGGCAACAATCACCACCGATATTT | + |
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Preference number: 3 (lower is better) Translates to: KGVGPRRETGRS*RSFWQQSPPIF Trigger: AAATATCGGTGGTGATTGTTGCCAAAATGACCTTCAGGACCGGCCTGTTTCCCGTCTGGGTCCAACTCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR GCA 72 bp | CAATCACCACCGATATTTACAACGAAAAGCGAAATCTaGCACCAGTTGTCAGAACGTTTACATGGCCATAAA | + |
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Preference number: 3 (lower is better) Translates to: QSPPIFTTKSEI*HQLSERLHGHK Trigger: TTTATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATCGGTGGTGATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | CCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGGGCTCCCTGCCTACAGTGCCCGCCTGGAAGGTaGCGGCTGCCAGGTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: PSSGLKARRTGQRAPCLQCPPGR*RLPGPG Trigger: CCCAGGACCTGGCAGCCGCCACCTTCCAGGCGGGCA...CTGTAGGCAGGGAGCCCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | CCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGGGCTCCCTGCCTACAGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: PSSGLKARRTGQRAPCLQCAVGY*GVLAEL Trigger: CAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACA...CTGTAGGCAGGGAGCCCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGCCCGGCCCTCTTGGCTaGCTCGGGCCCCTCGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQPGPLG*LGPLVL Trigger: GAGAACGAGGGGCCCGAGCCAGCCAAGAGGGCCGGG...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGCTCCAAGTTCGGGGCTaGAGGCCCGGAGGACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQLQVRG*RPGGQG Trigger: GCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGGAG...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGGAAGGCCCTCGGTGCTaGCCAGCCAGCGCGTGTACG | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQEGPRC*PASACT Trigger: CGTACACGCGCTGGCTGGCCAGCACCGAGGGCCTTC...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATATTCAGGGGCAGGCTCTaGACCGCGTCCAGGGCGCCC | + |
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Preference number: 4 (lower is better) Translates to: TSRRLPSGAESQLDSIIIFRGRL*TASRAP Trigger: GGGCGCCCTGGACGCGGTGCAGAGCCTGCCCCTGAA...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | CCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGGGCTCCCTGCCTACAGTGTACGGGTTGTCGCTaGTGTCGTAGAAGGGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PSSGLKARRTGQRAPCLQCTGCR*CRRRGS Trigger: AGAACCCCTTCTACGACAGCAGCGACAACCCGTACA...CTGTAGGCAGGGAGCCCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGACTGAAGGCCCTCGGTaGTGGCCAGCCAGCGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQTEGPR*WPASAC Trigger: ACACGCGCTGGCTGGCCAGCACCGAGGGCCTTCAGT...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATACCGTGCAGGGAGTACTaGAGGCCCTCGGTGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: TSRRLPSGAESQLDSIIIPCREY*RPSVLA Trigger: GGCCAGCACCGAGGGCCTTCAGTACTCCCTGCACGG...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGATGGTTTGCCGTCCCTaGCCAAGACGGGCACGGCCA | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQMVCRP*PRRARP Trigger: TGGCCGTGCCCGTCTTGGTCAGGGACGGCAAACCAT...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATATGCGCCCGGCGCTGTTaGGGAACCGCGCCGAATAGC | + |
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Preference number: 4 (lower is better) Translates to: TSRRLPSGAESQLDSIIICARRC*GTAPNS Trigger: GCTATTCGGCGCGGTTCCCCAACAGCGCCGGGCGCA...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | CCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGGGCTCCCTGCCTACAGGCTTTAGAAGACGGCTaGCAATATCGCTACTCACAC | + |
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Preference number: 4 (lower is better) Translates to: PSSGLKARRTGQRAPCLQALEDG*QYRYSH Trigger: GTGTGAGTAGCGATATTGTCAGCCGTCTTCTAAAGC...CTGTAGGCAGGGAGCCCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAAAGGGAATGCCCGCCTaGAAGGTGGCGGCTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TSRRLPSGAESQLDSIIIKGMPA*KVAAAR Trigger: CCTGGCAGCCGCCACCTTCCAGGCGGGCATTCCCTT...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAAGGGCTCCGGGGACTTaGAGCTTGAGTCCTGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: TSRRLPSGAESQLDSIIIRAPGT*SLSPEG Trigger: CCCCTCAGGACTCAAGCTCCAAGTCCCCGGAGCCCT...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | TCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTGGCCGCGAGTCTCGTTaGGGCGGCGCTCACCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: SRRLPSGAESQLDSIIIIGRESR*GGAHQV Trigger: GACTTGGTGAGCGCCGCCCCAACGAGACTCGCGGCC...AATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGAGCCCTCCTCATCGTTaGTGTCCGGCAGGTCTAAGA | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQSPPHR*CPAGLR Trigger: TCTTAGACCTGCCGGACACCAACGATGAGGAGGGCT...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | ACACGGCGTAGAGTTCAGCCCTCTCCCAAGGTTCAGAAGGAGAGGCATGGGCAGGGTCTAAGATGTCCTTaGCCGAAAACCCCGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TRRRVQPSPKVQKERHGQGLRCP*PKTPSL Trigger: CAAAGACGGGGTTTTCGGTCAAGGACATCTTAGACC...CTGCCCATGCCTCTCCTTCTGAACCTTGGGAGAGGGCTGAACTCTACGCCGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | TCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTAGGCAGAAAAGGGAATaGCCGCCTGGAAGGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: SRRLPSGAESQLDSIIIIRQKRE*PPGRWR Trigger: CCGCCACCTTCCAGGCGGGCATTCCCTTTTCTGCCT...AATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATAGCTCACCAAGTCCACTaGTGGGCCTGGACCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: RRLPSGAESQLDSIIIIIAHQVH*WAWTRG Trigger: CCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTGAGC...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATAGAAAGCACGCGGAAATaGACGCAGGAAGCCGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: RRLPSGAESQLDSIIIIIESTRK*TQEAGR Trigger: CCGCCCGGCTTCCTGCGTCCATTTCCGCGTGCTTTC...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCGGGGACTTGGAGCTTaGGTCCTGAGGGGGCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWRGLGA*VLRGRP Trigger: GGGGCGCCCCCTCAGGACTCAAGCTCCAAGTCCCCG...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAGAAACAGGCCGGTCCTaGAGGTCATTTTGGCAACAA | + |
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Preference number: 4 (lower is better) Translates to: TSRRLPSGAESQLDSIIIETGRS*RSFWQQ Trigger: TTGTTGCCAAAATGACCTTCAGGACCGGCCTGTTTC...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATAGCGTTGTACTGCATGTaGTGCAGCGACTGCGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: RRLPSGAESQLDSIIIIIALYCM*CSDCAL Trigger: CAGCGCGCAGTCGCTGCAGCACATGCAGTACAACGC...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | GTGTTCTCCACTTGCTTTAGAAGACGGCTGACAATATCGCTACTCACACAAACACTTGTCATTGTCCGGTaGCTCGTCGGCCGAGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: VFSTCFRRRLTISLLTQTLVIVR*LVGRGL Trigger: GAGCCCTCGGCCGACGAGTCACCGGACAATGACAAG...TGTTTGTGTGAGTAGCGATATTGTCAGCCGTCTTCTAAAGCAAGTGGAGAACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATCACTTGGTCAATTCGTaGCGCTCCCCTGCCCCGGCG | + |
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Preference number: 4 (lower is better) Translates to: FTTKSEICHQLSERLHGHHLVNS*RSPAPA Trigger: CGCCGGGGCAGGGGAGCGCCACGAATTGACCAAGTG...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | TCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTTTTGAGCGCGTGACATaGTTTGCCGTCCCTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: SRRLPSGAESQLDSIIIIFERVT*FAVPDQ Trigger: TTGGTCAGGGACGGCAAACCATGTCACGCGCTCAAA...AATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATACTGGCCGAGCTGTACTaGGCGTTGTACTGCATGTGC | + |
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Preference number: 4 (lower is better) Translates to: RRLPSGAESQLDSIIIIILAELY*ALYCMC Trigger: GCACATGCAGTACAACGCCCAGTACAGCTCGGCCAG...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATGTCCACTGCTGGGCCTaGACCAGGGGGTGTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: FTTKSEICHQLSERLHGHVHCWA*TRGCAV Trigger: GACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGAC...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | GTGTTCTCCACTTGCTTTAGAAGACGGCTGACAATATCGCTACTCACACAAACACACCAAGTCCACTGCTaGGCCTGGACCAGGGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: VFSTCFRRRLTISLLTQTHQVHC*AWTRGC Trigger: ACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTG...TGTTTGTGTGAGTAGCGATATTGTCAGCCGTCTTCTAAAGCAAGTGGAGAACAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATACCGCGCCGAATAGCTaGGCTCCAAGTTCGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FTTKSEICHQLSERLHGHTAPNS*APSSGL Trigger: CAGCCCCGAACTTGGAGCTCAGCTATTCGGCGCGGT...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATCCAGGTCCTGGGCTTTaGGCGCGTGACATGGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: FTTKSEICHQLSERLHGHPGPGL*ARDMVC Trigger: GCAAACCATGTCACGCGCTCAAAGCCCAGGACCTGG...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCTGGAAGGTGGCGGCTaGCAGGTCCTGGGCTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWLEGGG*QVLGFE Trigger: CTCAAAGCCCAGGACCTGGCAGCCGCCACCTTCCAG...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATAACCCCGTCTTTGTGTTaGTCAGCGACATGGTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: RRLPSGAESQLDSIIIIITPSLC*SATWFE Trigger: CTCGAACCATGTCGCTGACCAACACAAAGACGGGGT...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | GTGTTCTCCACTTGCTTTAGAAGACGGCTGACAATATCGCTACTCACACAAACAATGGGCAGAGCTGGGTaGGTGGAATCTGCCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: VFSTCFRRRLTISLLTQTMGRAG*VESATP Trigger: TGGAGTGGCAGATTCCACCCACCCAGCTCTGCCCAT...TGTTTGTGTGAGTAGCGATATTGTCAGCCGTCTTCTAAAGCAAGTGGAGAACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | CCGATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATTGGGCTTTGAGCGCGTaGCATGGTTTGCCGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: PIFTTKSEICHQLSERLHWALSA*HGLPSL Trigger: CAGGGACGGCAAACCATGTCACGCGCTCAAAGCCCA...ATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATGCAGAGCTGGGTGGGTaGAATCTGCCACTCCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: FTTKSEICHQLSERLHGHAELGG*NLPLQG Trigger: TCCTTGGAGTGGCAGATTCCACCCACCCAGCTCTGC...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | CCGATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATAGGCATGGGCAGAGCTaGGTGGGTGGAATCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: PIFTTKSEICHQLSERLHRHGQS*VGGICH Trigger: GTGGCAGATTCCACCCACCCAGCTCTGCCCATGCCT...ATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| 3UTR CAA 72 bp | ACCCAGACGGGAAACAGGCCGGTCCTGAAGGTCATTTaGGCAACAATCACCACCGATATTTACAACGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: TQTGNRPVLKVI*ATITTDIYNEK Trigger: CTTTTCGTTGTAAATATCGGTGGTGATTGTTGCCAAAATGACCTTCAGGACCGGCCTGTTTCCCGTCTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | TCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTAAAGTGTTCTCCACTTaGTTTAGAAGACGGCTGACA | + |
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Preference number: 4 (lower is better) Translates to: SRRLPSGAESQLDSIIIIKVFST*FRRRLT Trigger: TGTCAGCCGTCTTCTAAAGCAAGTGGAGAACACTTT...AATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGTACTGGGCGTTGTACTaGATGTGCTGCAGCGACTGC | + |
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Preference number: 4 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWYWALY*MCCSDC Trigger: GCAGTCGCTGCAGCACATGCAGTACAACGCCCAGTA...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATAACGAAAAGCGAAATCTaGCACCAGTTGTCAGAACGT | + |
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Preference number: 4 (lower is better) Translates to: RRLPSGAESQLDSIIIIITKSEI*HQLSER Trigger: ACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGT...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGGGGCAGAGGGCTCCCTaGCTACAGGGTTTTCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWGQRAP*LQGFLF Trigger: GAAAAGAAAACCCTGTAGGCAGGGAGCCCTCTGCCC...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR GCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGAAATCGAAAGCTTTCTaGGCCCGGCGCTGTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWKSKAF*ARRCWG Trigger: TCCCCAACAGCGCCGGGCGCAGAAAGCTTTCGATTT...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | GTGTTCTCCACTTGCTTTAGAAGACGGCTGACAATATCGCTACTCACACAAACAAGTTGTAGCTTCACTTaGTCAATTCGTGGCGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: VFSTCFRRRLTISLLTQTSCSFT*SIRGAP Trigger: GGGAGCGCCACGAATTGACCAAGTGAAGCTACAACT...TGTTTGTGTGAGTAGCGATATTGTCAGCCGTCTTCTAAAGCAAGTGGAGAACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR TCA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGTCTCTCTGTCTTCTTTaGAAGCACGCGGAAATGGAC | + |
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Preference number: 4 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWSLCLL*KHAEMD Trigger: GTCCATTTCCGCGTGCTTTCAAAGAAGACAGAGAGA...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CCA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATTGTTGGTCAGCGACATaGTTCGAGACCCCAAAATTT | + |
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Preference number: 4 (lower is better) Translates to: FTTKSEICHQLSERLHGHCWSAT*FETPKF Trigger: AAATTTTGGGGTCTCGAACCATGTCGCTGACCAACA...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 90 bp | TCTGCACCGCGTCCAGGGCGCCCTGCCCCAGCGGCCCGGCCCTCTTaGCTGGCTCGGGCCCCTCGTTCTCTTCCTCCGGACCTTCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: SAPRPGRPAPAARPS*LARAPRSLPPDLRP Trigger: TGGCCGAAGGTCCGGAGGAAGAGAACGAGGGGCCCGAGCCAGCCAAGAGGGCCGGGCCGCTGGGGCAGGGCGCCCTGGACGCGGTGCAGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS GCA 90 bp | GCGCCCCGGCAGCCAGACCGTGCAGGGAGTACTGAAGGCCCTCGGTaGTGGCCAGCCAGCGCGTGTACGGGTTGTCGCTGCTGTCGTAGA | + |
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Preference number: 5 (lower is better) Translates to: APRQPDRAGSTEGPR*WPASACTGCRCCRR Trigger: TCTACGACAGCAGCGACAACCCGTACACGCGCTGGCTGGCCAGCACCGAGGGCCTTCAGTACTCCCTGCACGGTCTGGCTGCCGGGGCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 90 bp | CCCAACCCAGTGCCTCTCTCTGTCTTCTTTGAAAGCACGCGGAAATaGACGCAGGAAGCCGGGCGGCCTGCGCGCCGAGCGCCGCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: PNPVPLSVFFESTRK*TQEAGRPARRAPRA Trigger: GGCCCGCGGCGCTCGGCGCGCAGGCCGCCCGGCTTCCTGCGTCCATTTCCGCGTGCTTTCAAAGAAGACAGAGAGAGGCACTGGGTTGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 90 bp | CCCCGGCAGCCAGACCGTGCAGGGAGTACTGAAGGCCCTCGGTGCTaGCCAGCCAGCGCGTGTACGGGTTGTCGCTGCTGTCGTAGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: PRQPDRAGSTEGPRC*PASACTGCRCCRRR Trigger: CCTTCTACGACAGCAGCGACAACCCGTACACGCGCTGGCTGGCCAGCACCGAGGGCCTTCAGTACTCCCTGCACGGTCTGGCTGCCGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 90 bp | CAAGTCCACTGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTACTGCATGTGC | + |
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Preference number: 5 (lower is better) Translates to: QVHCWAWTRGCAVGY*GVLAELYWALYCMC Trigger: GCACATGCAGTACAACGCCCAGTACAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | CCAAGTTCGGGGCTGAAGGCCCGGAGGACAGGGCAGAGGGCTCCCTGCCTACAGAACCCCGTCTTTGTGTaGGTCAGCGACATGGTTCGA | + |
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Preference number: 5 (lower is better) Translates to: PSSGLKARRTGQRAPCLQNPVFV*VSDMVR Trigger: TCGAACCATGTCGCTGACCAACACAAAGACGGGGTT...CTGTAGGCAGGGAGCCCTCTGCCCTGTCCTCCGGGCCTTCAGCCCCGAACTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAGGGCCGCGAGTCTCGTaGGGGCGGCGCTCACCAAGT | + |
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Preference number: 5 (lower is better) Translates to: TSRRLPSGAESQLDSIIIGPRVS*GRRSPS Trigger: ACTTGGTGAGCGCCGCCCCAACGAGACTCGCGGCCC...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATACCGCCCGGGGTCTCCTaGTCATTGTCCGGTGACTCG | + |
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Preference number: 5 (lower is better) Translates to: TSRRLPSGAESQLDSIIIPPGVS*SLSGDS Trigger: CGAGTCACCGGACAATGACAAGGAGACCCCGGGCGG...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | TCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTGGGGTCTCCTTGTCATaGTCCGGTGACTCGTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: SRRLPSGAESQLDSIIIIGVSLS*SGDSSA Trigger: GGCCGACGAGTCACCGGACAATGACAAGGAGACCCC...AATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS TCA 90 bp | CAGAGCCCTCCTCATCGTTGGTGTCCGGCAGGTCTAAGATGTCCTTaGCCGAAAACCCCGTCTTTGTGTTGGTCAGCGACATGGTTCGAG | + |
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Preference number: 5 (lower is better) Translates to: QSPPHRWCPAGLRCP*PKTPSLCWSATWFE Trigger: CTCGAACCATGTCGCTGACCAACACAAAGACGGGGTTTTCGGTCAAGGACATCTTAGACCTGCCGGACACCAACGATGAGGAGGGCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATCCGGGGACTTGGAGCTaGAGTCCTGAGGGGGCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: FTTKSEICHQLSERLHGHPGTWS*SPEGAP Trigger: GGGCGCCCCCTCAGGACTCAAGCTCCAAGTCCCCGG...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | ACCTCCCGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAGAAATCTGCCACCAGTaGTCAGAACGTTTACATGGC | + |
|
Preference number: 5 (lower is better) Translates to: TSRRLPSGAESQLDSIIIEICHQ*SERLHG Trigger: GCCATGTAAACGTTCTGACAACTGGTGGCAGATTTC...TATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCGGGAGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | CGGCGCCTCCCTAGTGGAGCCGAGAGTCAACTCGACTCCATAATAATAATTATACCGAAAACCCCGTCTTaGTGTTGGTCAGCGACATGG | + |
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Preference number: 5 (lower is better) Translates to: RRLPSGAESQLDSIIIIIPKTPS*CWSATW Trigger: CCATGTCGCTGACCAACACAAAGACGGGGTTTTCGG...TATAATTATTATTATGGAGTCGAGTTGACTCTCGGCTCCACTAGGGAGGCGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGGAGCCCTCCTCATCGTaGGTGTCCGGCAGGTCTAAG | + |
|
Preference number: 5 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWEPSSS*VSGRSK Trigger: CTTAGACCTGCCGGACACCAACGATGAGGAGGGCTC...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATCCACAAAGAAAGGAGTaGGACCCAGACGGGAAACAG | + |
|
Preference number: 5 (lower is better) Translates to: FTTKSEICHQLSERLHGHPQRKE*DPDGKQ Trigger: CTGTTTCCCGTCTGGGTCCAACTCCTTTCTTTGTGG...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | GTGTTCTCCACTTGCTTTAGAAGACGGCTGACAATATCGCTACTCACACAAACAGTCCTGAAGGTCATTTaGGCAACAATCACCACCGAT | + |
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Preference number: 5 (lower is better) Translates to: VFSTCFRRRLTISLLTQTVLKVI*ATITTD Trigger: ATCGGTGGTGATTGTTGCCAAAATGACCTTCAGGAC...TGTTTGTGTGAGTAGCGATATTGTCAGCCGTCTTCTAAAGCAAGTGGAGAACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | TTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCCATAGGTCTAAGATGTCCTaGACCGAAAACCCCGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: FTTKSEICHQLSERLHGHRSKMS*TENPVF Trigger: AAAGACGGGGTTTTCGGTCAAGGACATCTTAGACCT...ATGGCCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS-3UTR CAA 90 bp | GATATTTACAACGAAAAGCGAAATCTGCCACCAGTTGTCAGAACGTTTACATGGCTCTCTCTGTCTTCTTaGAAAGCACGCGGAAATGGA | + |
|
Preference number: 5 (lower is better) Translates to: DIYNEKRNLPPVVRTFTWLSLSS*KARGNG Trigger: TCCATTTCCGCGTGCTTTCAAAGAAGACAGAGAGAG...CCATGTAAACGTTCTGACAACTGGTGGCAGATTTCGCTTTTCGTTGTAAATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CAA 90 bp | CTCTGCACCGCGTCCAGGGCGCCCTGCCCCAGCGGCCCGGCCCTCTaGGCTGGCTCGGGCCCCTCGTTCTCTTCCTCCGGACCTTCGGCC | + |
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Preference number: 6 (lower is better) Translates to: LCTASRAPCPSGPAL*AGSGPSFSSSGPSA Trigger: GGCCGAAGGTCCGGAGGAAGAGAACGAGGGGCCCGAGCCAGCCAAGAGGGCCGGGCCGCTGGGGCAGGGCGCCCTGGACGCGGTGCAGAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS GCA 72 bp | CGCGAGTCTCGTTGGGGCGGCGCTCACCAAGTCCACTaGTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: RESRWGGAHQVH*WAWTRGCAVGY Trigger: GTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTGAGCGCCGCCCCAACGAGACTCGCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 72 bp | GGCGGCTGCCAGGTCCTGGGCTTTGAGCGCGTGACATaGTTTGCCGTCCCTGACCAAGACGGGCACGGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: GGCQVLGFERVT*FAVPDQDGHGH Trigger: GTGGCCGTGCCCGTCTTGGTCAGGGACGGCAAACCATGTCACGCGCTCAAAGCCCAGGACCTGGCAGCCGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 72 bp | TGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: CWAWTRGCAVGY*GVLAELYWALY Trigger: GTACAACGCCCAGTACAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 72 bp | GAGTCTCGTTGGGGCGGCGCTCACCAAGTCCACTGCTaGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTGG | + |
|
Preference number: 6 (lower is better) Translates to: ESRWGGAHQVHC*AWTRGCAVGYW Trigger: CCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTGAGCGCCGCCCCAACGAGACTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CCA 72 bp | CCAGACCGTGCAGGGAGTACTGAAGGCCCTCGGTGCTaGCCAGCCAGCGCGTGTACGGGTTGTCGCTGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PDRAGSTEGPRC*PASACTGCRCC Trigger: ACAGCAGCGACAACCCGTACACGCGCTGGCTGGCCAGCACCGAGGGCCTTCAGTACTCCCTGCACGGTCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS TCA 72 bp | AAGGTGGCGGCTGCCAGGTCCTGGGCTTTGAGCGCGTaGCATGGTTTGCCGTCCCTGACCAAGACGGGCACG | + |
|
Preference number: 6 (lower is better) Translates to: KVAAARSWALSA*HGLPSLTKTGT Trigger: CGTGCCCGTCTTGGTCAGGGACGGCAAACCATGTCACGCGCTCAAAGCCCAGGACCTGGCAGCCGCCACCTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS GCA 72 bp | CGGTGCTGGCCAGCCAGCGCGTGTACGGGTTGTCGCTaGTGTCGTAGAAGGGGTTCTTCAGGGGCAGGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: RCWPASACTGCR*CRRRGSSGAGS Trigger: AGAGCCTGCCCCTGAAGAACCCCTTCTACGACAGCAGCGACAACCCGTACACGCGCTGGCTGGCCAGCACCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CAA 72 bp | TCCTCCGGACCTTCGGCCACAGAGCCCTCCTCATCGTaGGTGTCCGGCAGGTCTAAGATGTCCTTGACCGAA | + |
|
Preference number: 6 (lower is better) Translates to: SSGPSATEPSSS*VSGRSKMSLTE Trigger: TTCGGTCAAGGACATCTTAGACCTGCCGGACACCAACGATGAGGAGGGCTCTGTGGCCGAAGGTCCGGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CAA 90 bp | TCGTTCTCTTCCTCCGGACCTTCGGCCACAGAGCCCTCCTCATCGTaGGTGTCCGGCAGGTCTAAGATGTCCTTGACCGAAAACCCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: SFSSSGPSATEPSSS*VSGRSKMSLTENPV Trigger: GACGGGGTTTTCGGTCAAGGACATCTTAGACCTGCCGGACACCAACGATGAGGAGGGCTCTGTGGCCGAAGGTCCGGAGGAAGAGAACGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CAA 90 bp | ACAGAGCCCTCCTCATCGTTGGTGTCCGGCAGGTCTAAGATGTCCTaGACCGAAAACCCCGTCTTTGTGTTGGTCAGCGACATGGTTCGA | + |
|
Preference number: 6 (lower is better) Translates to: TEPSSSLVSGRSKMS*TENPVFVLVSDMVR Trigger: TCGAACCATGTCGCTGACCAACACAAAGACGGGGTTTTCGGTCAAGGACATCTTAGACCTGCCGGACACCAACGATGAGGAGGGCTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS TCA 72 bp | CCTCATCGTTGGTGTCCGGCAGGTCTAAGATGTCCTTaGCCGAAAACCCCGTCTTTGTGTTGGTCAGCGACA | + |
|
Preference number: 6 (lower is better) Translates to: PHRWCPAGLRCP*PKTPSLCWSAT Trigger: TGTCGCTGACCAACACAAAGACGGGGTTTTCGGTCAAGGACATCTTAGACCTGCCGGACACCAACGATGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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| CDS CAA 72 bp | TCCTCATCGTTGGTGTCCGGCAGGTCTAAGATGTCCTaGACCGAAAACCCCGTCTTTGTGTTGGTCAGCGAC | + |
|
Preference number: 6 (lower is better) Translates to: SSSLVSGRSKMS*TENPVFVLVSD Trigger: GTCGCTGACCAACACAAAGACGGGGTTTTCGGTCAAGGACATCTTAGACCTGCCGGACACCAACGATGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377142.5 |
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