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Pregenerated sensors for NKX1-1 (Homo sapiens)

Ensembl gene IDs: ENSG00000235608

Ensembl transcript IDs: ENST00000422806.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGGGCAGCGGCGGCGGGAGCGGGCGGTGCGGGCCCCGAACCTGGCTaGGGAGGCGGCGGTAGCGCGGGAATGTCCCCAGGAGCCTCGGGG +
Preference number: 5 (lower is better)
Translates to: WAAAAGAGGAGPEPG*GGGGSAGMSPGASG
Trigger: CCCCGAGGCTCCTGGGGACATTCCCGCGCTACCGCCGCCTCCCCAGCCAGGTTCGGGGCCCGCACCGCCCGCTCCCGCCGCCGCTGCCCA
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS GCA 90 bp CGGTGCGCGCTCGCCGCGGCTTCCCGGACTTGGAGTCGGACCCCGTaGGCTTCCGCTTGGGCTTCGCCGCCGTCGCCGTGCCCTGCGGGG +
Preference number: 5 (lower is better)
Translates to: RCALAAASRTWSRTP*ASAWASPPSPCPAG
Trigger: CCCCGCAGGGCACGGCGACGGCGGCGAAGCCCAAGCGGAAGCGCACGGGGTCCGACTCCAAGTCCGGGAAGCCGCGGCGAGCGCGCACCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS GCA 90 bp GCCGCCGCTGCTGTAGCCGTTGGTGTCGTTGGTCTCGGCCTCCCCTaGCTTGAAGGGGTCGCCGGCGTTCGGCGGCTCAGCTCCGGCGGC +
Preference number: 5 (lower is better)
Translates to: AAAAVAVGVVGLGLP*LEGVAGVRRLSSGG
Trigger: GCCGCCGGAGCTGAGCCGCCGAACGCCGGCGACCCCTTCAAGGCAGGGGAGGCCGAGACCAACGACACCAACGGCTACAGCAGCGGCGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS CCA 90 bp GGCGCATGGGGCCGAAGCGCAAGGGGCGCACGCAGCGGGAGCCACTaGGCCCAGCAGCACGCAACGACGCCTCCTGCTGTTGAACTTGTT +
Preference number: 5 (lower is better)
Translates to: GAWGRSARGARSGSH*AQQHATTPPAVELV
Trigger: AACAAGTTCAACAGCAGGAGGCGTCGTTGCGTGCTGCTGGGCCCAGTGGCTCCCGCTGCGTGCGCCCCTTGCGCTTCGGCCCCATGCGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS GCA 72 bp CTCGCCGCGGCTTCCCGGACTTGGAGTCGGACCCCGTaGGCTTCCGCTTGGGCTTCGCCGCCGTCGCCGTGC +
Preference number: 6 (lower is better)
Translates to: LAAASRTWSRTP*ASAWASPPSPC
Trigger: GCACGGCGACGGCGGCGAAGCCCAAGCGGAAGCGCACGGGGTCCGACTCCAAGTCCGGGAAGCCGCGGCGAG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS CCA 72 bp TCCCGGACTTGGAGTCGGACCCCGTGCGCTTCCGCTTaGGCTTCGCCGCCGTCGCCGTGCCCTGCGGGGTGG +
Preference number: 6 (lower is better)
Translates to: SRTWSRTPCASA*ASPPSPCPAGW
Trigger: CCACCCCGCAGGGCACGGCGACGGCGGCGAAGCCCAAGCGGAAGCGCACGGGGTCCGACTCCAAGTCCGGGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS CAA 72 bp TTCCCGGACTTGGAGTCGGACCCCGTGCGCTTCCGCTaGGGCTTCGCCGCCGTCGCCGTGCCCTGCGGGGTG +
Preference number: 6 (lower is better)
Translates to: FPDLESDPVRFR*GFAAVAVPCGV
Trigger: CACCCCGCAGGGCACGGCGACGGCGGCGAAGCCCAAGCGGAAGCGCACGGGGTCCGACTCCAAGTCCGGGAA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS CCA 72 bp GGCCGAAGCGCAAGGGGCGCACGCAGCGGGAGCCACTaGGCCCAGCAGCACGCAACGACGCCTCCTGCTGTT +
Preference number: 6 (lower is better)
Translates to: GRSARGARSGSH*AQQHATTPPAV
Trigger: AACAGCAGGAGGCGTCGTTGCGTGCTGCTGGGCCCAGTGGCTCCCGCTGCGTGCGCCCCTTGCGCTTCGGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS TCA 72 bp AGCCGTTGGTGTCGTTGGTCTCGGCCTCCCCTGCCTTaGAGGGGTCGCCGGCGTTCGGCGGCTCAGCTCCGG +
Preference number: 6 (lower is better)
Translates to: SRWCRWSRPPLP*RGRRRSAAQLR
Trigger: CCGGAGCTGAGCCGCCGAACGCCGGCGACCCCTTCAAGGCAGGGGAGGCCGAGACCAACGACACCAACGGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS GCA 72 bp GCTGTAGCCGTTGGTGTCGTTGGTCTCGGCCTCCCCTaGCTTGAAGGGGTCGCCGGCGTTCGGCGGCTCAGC +
Preference number: 6 (lower is better)
Translates to: AVAVGVVGLGLP*LEGVAGVRRLS
Trigger: GCTGAGCCGCCGAACGCCGGCGACCCCTTCAAGGCAGGGGAGGCCGAGACCAACGACACCAACGGCTACAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422806.2
CDS TCA 72 bp CTGGGCCCAGCAGCACGCAACGACGCCTCCTGCTGTTaGACTTGTTGGGGTCCAGGATGTCCAGTACCGAGA +
Preference number: 6 (lower is better)
Translates to: LGPAARNDASCC*TCWGPGCPVPR
Trigger: TCTCGGTACTGGACATCCTGGACCCCAACAAGTTCAACAGCAGGAGGCGTCGTTGCGTGCTGCTGGGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422806.2