RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKRF (Homo sapiens)

Ensembl gene IDs: ENSG00000186416

Ensembl transcript IDs: ENST00000304449.8, ENST00000487600.1, ENST00000542113.3, ENST00000649446.1

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGATGTGCTGCACATCCAAACCGTGTGAAAGCTATAATGGAGAGTTaGTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGC +
Preference number: 1 (lower is better)
Translates to: GCAAHPNRVKAIMES*CESLCKAPRTNSSS
Trigger: GCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTTCACACGGTTTGGATGTGCAGCACATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR TCA 90 bp TGCTGCACATCCAAACCGTGTGAAAGCTATAATGGAGAGTTGCTGTaGGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCT +
Preference number: 1 (lower is better)
Translates to: CCTSKPCESYNGELL*VSLQGTKNKQFKLP
Trigger: AGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTTCACACGGTTTGGATGTGCAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR CCA 90 bp GTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTaGATGTGCTGCACATCCAAACCGTGTGAAAGCTATAATGGAGAG +
Preference number: 1 (lower is better)
Translates to: VSSVFYQALPQLWLP*MCCTSKPCESYNGE
Trigger: CTCTCCATTATAGCTTTCACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR CCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTaGTTGCCTTGGATGTGCTGCACATCCAAACCGTGTGAAAGCTAT +
Preference number: 1 (lower is better)
Translates to: STNVSSVFYQALPQL*LPWMCCTSKPCESY
Trigger: ATAGCTTTCACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR GCA 90 bp CCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTaGCTTGGATGTGCTGCACATCCAAACCGTGTGAAAGCTATAATG +
Preference number: 1 (lower is better)
Translates to: PMYLQSFTKLYHSCG*LGCAAHPNRVKAIM
Trigger: CATTATAGCTTTCACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR TCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTAATGGAGAGTTGCTGTaGGTCTCTCTGCAAGGCACC +
Preference number: 2 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCNGELL*VSLQGT
Trigger: GGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATT...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR GCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTGCTGTGAGTCTCTCTaGAAGGCACCAAGAACAAAC +
Preference number: 2 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLCCESL*KAPRTN
Trigger: GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR CCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACCAGCTGTGGTTGCCTTaGATGTGCTGCACATCCAAA +
Preference number: 2 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHQLWLP*MCCTSK
Trigger: TTTGGATGTGCAGCACATCCAAGGCAACCACAGCTG...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR CAA 90 bp ACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTaGCCTTGGATGTGCTGCACATCCAAACCGTGTGAAAGCTATAAT +
Preference number: 2 (lower is better)
Translates to: TNVSSVFYQALPQLW*PWMCCTSKPCESYN
Trigger: ATTATAGCTTTCACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR GCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCACTGCACAATATCATCTaGTGGATTAAGCTAATACAA +
Preference number: 2 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAALHNII*WIKLIQ
Trigger: TTGTATTAGCTTAATCCAGCAGATGATATTGTGCAG...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR TCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTGCTCTCTCAGCGTaGAGACTAGAATTTGTTAAA +
Preference number: 2 (lower is better)
Translates to: KAIMESCCESLCKAPRTNSALSA*RLEFVK
Trigger: TTTAACAAATTCTAGTCTTCACGCTGAGAGAGCACT...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR GCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCTGCACAATATCATCTaGTGGATTAAGCTAATACAA +
Preference number: 2 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLLHNII*WIKLIQ
Trigger: TTGTATTAGCTTAATCCAGCAGATGATATTGTGCAG...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGCATATTGTTGCAGATTaGTGTGCTATGCCCTTTAAA +
Preference number: 2 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMHIVAD*CAMPFK
Trigger: TTTAAAGGGCATAGCACAGCAATCTGCAACAATATG...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR CCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCACAATATCATCTGCTaGATTAAGCTAATACAAGTG +
Preference number: 2 (lower is better)
Translates to: STNVSSVFYQALPQLWLPHNIIC*IKLIQV
Trigger: CACTTGTATTAGCTTAATCCAGCAGATGATATTGTG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR CCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCACTTCCAATAGTCTaGAAATCACATGGTAGAAGT +
Preference number: 2 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMSLPIV*KSHGRS
Trigger: ACTTCTACCATGTGATTTCCAGACTATTGGAAGTGA...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR TCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGAGTGCTCTCTCAGCGTaGAGACTAGAATTTGTTAAA +
Preference number: 2 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKSALSA*RLEFVK
Trigger: TTTAACAAATTCTAGTCTTCACGCTGAGAGAGCACT...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACAACTTTACATATTGTTaGAGATTGCTGTGCTATGCC +
Preference number: 2 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHNFTYC*RLLCYA
Trigger: GGCATAGCACAGCAATCTGCAACAATATGTAAAGTT...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR CCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTCACTTCCAATAGTCTaGAAATCACATGGTAGAAGT +
Preference number: 2 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHSLPIV*KSHGRS
Trigger: ACTTCTACCATGTGATTTCCAGACTATTGGAAGTGA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR GCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGCATATTGTTGCAGATTaGTGTGCTATGCCCTTTAAA +
Preference number: 2 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKHIVAD*CAMPFK
Trigger: TTTAAAGGGCATAGCACAGCAATCTGCAACAATATG...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR CCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACCACAATATCATCTGCTaGATTAAGCTAATACAAGTG +
Preference number: 2 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHHNIIC*IKLIQV
Trigger: CACTTGTATTAGCTTAATCCAGCAGATGATATTGTG...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR-3UTR TCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTCAAACTACTAAAATCTaGGGGACACAGCAATATCAA +
Preference number: 2 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFQTTKI*GTQQYQ
Trigger: TTGATATTGCTGTGTCCCTCAGATTTTAGTAGTTTG...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR GCA 72 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTaGCTTGGATGTGCTGCACATCCAAACCGTGTGAAA +
Preference number: 3 (lower is better)
Translates to: LQSFTKLYHSCG*LGCAAHPNRVK
Trigger: TTTCACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR CCA 72 bp GTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTaGATGTGCTGCACATCCAAACCGTGTGAAAGCTAT +
Preference number: 3 (lower is better)
Translates to: VFYQALPQLWLP*MCCTSKPCESY
Trigger: ATAGCTTTCACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR CCA 72 bp GTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTaGTTGCCTTGGATGTGCTGCACATCCAAACCGTGT +
Preference number: 3 (lower is better)
Translates to: VSSVFYQALPQL*LPWMCCTSKPC
Trigger: ACACGGTTTGGATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR TCA 72 bp TCCAAACCGTGTGAAAGCTATAATGGAGAGTTGCTGTaGGTCTCTCTGCAAGGCACCAAGAACAAACAGTTC +
Preference number: 3 (lower is better)
Translates to: SKPCESYNGELL*VSLQGTKNKQF
Trigger: GAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTTCACACGGTTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR TCA 72 bp GGCTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTaGCCTTTTCATCAAAGCACCAATGTATCTTCAGTC +
Preference number: 3 (lower is better)
Translates to: GLISFLREGPAN*PFHQSTNVSSV
Trigger: GACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAGCAGGTGCCGACAGATaGAGCTGCGCCGCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAAGADR*SCAAEP
Trigger: GGGCTCTGCGGCGCAGCTTCATCTGTCGGCACCTGC...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAGGGGACTGGAGTGTGTaGGTGGGGGCCACCGTTAGG +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAGDWSV*VGATVR
Trigger: CCTAACGGTGGCCCCCACGCACACACTCCAGTCCCC...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACGAGAGCGCGAGGAGCTaGTCGAGGGCAGCCCCGGGA +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNESARS*SRAAPG
Trigger: TCCCGGGGCTGCCCTCGACCAGCTCCTCGCGCTCTC...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGGAGAGCGCGAGGAGCTaGTCGAGGGCAGCCCCGGGA +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMESARS*SRAAPG
Trigger: TCCCGGGGCTGCCCTCGACCAGCTCCTCGCGCTCTC...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGGCAGGTGCCGACAGATaGAGCTGCGCCGCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMAGADR*SCAAEP
Trigger: GGGCTCTGCGGCGCAGCTTCATCTGTCGGCACCTGC...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAAGCGTGGGCTGTACCTaGAGCCCAGGAAGACGTGGT +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAASVGCT*SPGRRG
Trigger: ACCACGTCTTCCTGGGCTGCAGGTACAGCCCACGCT...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCCAGGAAGACGTGGTTaGTCCAGGCGGCGGAGAGCG +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLPGRRG*SRRRRA
Trigger: CGCTCTCCGCCGCCTGGACCAACCACGTCTTCCTGG...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCCAGGAAGACGTGGTTaGTCCAGGCGGCGGAGAGCG +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPPGRRG*SRRRRA
Trigger: CGCTCTCCGCCGCCTGGACCAACCACGTCTTCCTGG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGGTCCCGACACTGGGATaGACGTCCCCTACACTCCTC +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLVPTLG*TSPTLL
Trigger: GAGGAGTGTAGGGGACGTGCATCCCAGTGTCGGGAC...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCAGCCCAGGAAGACGTaGTTGGTCCAGGCGGCGGAG +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCQPRKT*LVQAAE
Trigger: CTCCGCCGCCTGGACCAACCACGTCTTCCTGGGCTG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCATTGCCTGCTGTGATGTaGTGCTTGGGGCAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAALPAVM*CLGQGS
Trigger: GGAACCCTGCCCCAAGCACCACATCACAGCAGGCAA...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGAGAGTTTGCCTGCTGTaGTGTGGTGCTTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLRVCLL*CGAWGR
Trigger: CCTGCCCCAAGCACCACATCACAGCAGGCAAACTCT...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCACACTCCTCTAACTCGTaGAGGAGCAGAAGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAHSSNS*RSRRAS
Trigger: GGAAGCCCTTCTGCTCCTCCACGAGTTAGAGGAGTG...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCTCGCGTCCCGACACTaGGATGCACGTCCCCTACAC +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNLASRH*DARPLH
Trigger: GTGTAGGGGACGTGCATCCCAGTGTCGGGACGCGAG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR TCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTGCCGTCCGGGGTTGTaGGGCCAGTGCGCTTGCGCC +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSCRPGL*GQCACA
Trigger: GGCGCAAGCGCACTGGCCTCACAACCCCGGACGGCA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR TCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTAGAGTTTGCCTGCTGTaGTGTGGTGCTTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPRVCLL*CGAWGR
Trigger: CCTGCCCCAAGCACCACATCACAGCAGGCAAACTCT...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAGGCTCAGGAGTTGACTaGGAGTTTGCCTGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAGSGVD*EFACCD
Trigger: ATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCC...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAATGCTGCTCTTTCACTaGGATAGGCTCCCGTATGCC +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAMLLFH*DRLPYA
Trigger: GGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCAT...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGACCCCAGCACGCTCTaGTCCCCTCCTCTAGGTTCT +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCDPSTL*SPPLGS
Trigger: AGAACCTAGAGGAGGGGAGCAGAGCGTGCTGGGGTC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR GCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCGCCGCAGAGCCCACTaGCAGTCACTTTCGTGGCTA +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNRRRAH*QSLSWL
Trigger: TAGCCACGAAAGTGACTGGCAGTGGGCTCTGCGGCG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGCCTGCTGTGATGTGGTaGTTGGGGCAGGGTTCCCAC +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMPAVMW*LGQGSH
Trigger: GTGGGAACCCTGCCCCAAGCACCACATCACAGCAGG...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCGCAGACCCACGCACTaGGCGGAGAGCGATAAAAGA +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCRRPTH*AESDKR
Trigger: TCTTTTATCGCTCTCCGCGCAGTGCGTGGGTCTGCG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTCAGCCCAGGAAGACGTaGTTGGTCCAGGCGGCGGAG +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFQPRKT*LVQAAE
Trigger: CTCCGCCGCCTGGACCAACCACGTCTTCCTGGGCTG...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCACAGCTGTGGTTGCCTTaGATGTGCTGCACATCCAAA +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAQLWLP*MCCTSK
Trigger: TTTGGATGTGCAGCACATCCAAGGCAACCACAGCTG...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACGAGGACATGCCAATCTaGCACACCACGAGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNEDMPI*HTTRSS
Trigger: AGAGGACCTCGTGGTGTGTCAGATTGGCATGTCCTC...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTCATGGCCCACCCCATaGGACTTACTCTTAAGACCA +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLSWPTP*DLLLRP
Trigger: TGGTCTTAAGAGTAAGTCTCATGGGGTGGGCCATGA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTGAGGGACCAGCCAACTaGCCTTTTCATCAAAGCACC +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLEGPAN*PFHQST
Trigger: GGTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTC...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGACTGGAGTGTGTGCGTaGGGGCCACCGTTAGGAGGA +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKTGVCA*GPPLGG
Trigger: TCCTCCTAACGGTGGCCCCCACGCACACACTCCAGT...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTTGCCTGCTGTGATGTaGTGCTTGGGGCAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHLPAVM*CLGQGS
Trigger: GGAACCCTGCCCCAAGCACCACATCACAGCAGGCAA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCACCAGGTCTTCTGGTaGCTTCAGAGCTGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLHQVFW*LQSWRK
Trigger: TTTCCTCCAGCTCTGAAGCCACCAGAAGACCTGGTG...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTCTACCACAGCTGTaGTTGCCTTGGATGTGCTGC +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCALPQL*LPWMCC
Trigger: GCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTGAGAGGTGGCGTTTTTaGCCTTTGGAAGGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLERWRF*PLEGLD
Trigger: GTCCAAACCTTCCAAAGGTCAAAAACGCCACCTCTC...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAGGCATTGTGAACTTTTaGCAGATGGATAAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAGIVNF*QMDKWA
Trigger: AGCCCACTTATCCATCTGTCAAAAGTTCACAATGCC...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGTAAGCCTCCTCTGCTaGGCGGCCCTGAATTTCATT +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCVSLLC*AALNFI
Trigger: AATGAAATTCAGGGCCGCTCAGCAGAGGAGGCTTAC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTCTCTAGAATCACTTTaGATTTCCAGCGGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLSLESL*ISSGGL
Trigger: CAGGCCTCCGCTGGAAATGCAAAGTGATTCTAGAGA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGTTGCCTTGGATGTaGTGCACATCCAAACCGTGT +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPWLPWM*CTSKPC
Trigger: ACACGGTTTGGATGTGCAGCACATCCAAGGCAACCA...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCTTCTATATGGAAGCTaGAGCCCAGGAAGACGTGGT +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLLLYGS*SPGRRG
Trigger: ACCACGTCTTCCTGGGCTGCAGCTTCCATATAGAAG...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR CCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTAAACGAGGTCTCGCATaGAATTTGGAACCGGCTTGC +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLKRGLA*NLEPAC
Trigger: GCAAGCCGGTTCCAAATTCCATGCGAGACCTCGTTT...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCAGCACCAGATCATATaGAGGCATCTCCCCAATATC +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPQHQII*RHLPNI
Trigger: GATATTGGGGAGATGCCTTCATATGATCTGGTGCTG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGGCTCAGGAGTTGACTaGGAGTTTGCCTGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHGSGVD*EFACCD
Trigger: ATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCTCCAAATGTATGCTTaGATTTCCGCCGGACAACTC +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPLQMYA*ISAGQL
Trigger: GAGTTGTCCGGCGGAAATTCAAGCATACATTTGGAG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGGTCATTCGGTTAAACTaGGCTGTGTCGTTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMVIRLN*AVSFSV
Trigger: CACGCTGAACGACACAGCTCAGTTTAACCGAATGAC...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCTTGGCCTTCCTGTTTaGGCTGATCTAGTAGGTCTT +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPLGLPV*ADLVGL
Trigger: AAGACCTACTAGATCAGCTCAAACAGGAAGGCCAAG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACAATGGAGAGTTGCTGTaGGTCTCTCTGCAAGGCACC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHNGELL*VSLQGT
Trigger: GGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATT...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGAGGGACCAGCCAACTaGCCTTTTCATCAAAGCACC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHEGPAN*PFHQST
Trigger: GGTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCCTTCCCGCTTATGCTaGTCTTTCACTGAGATAGGC +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCPSRLC*SFTEIG
Trigger: GCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTTGGTTGCCTTGGATGTaGTGCACATCCAAACCGTGT +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCWLPWM*CTSKPC
Trigger: ACACGGTTTGGATGTGCAGCACATCCAAGGCAACCA...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGAGCCCATCTAAAGACTaGACTTGGTCCCTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMSPSKD*TWSLAS
Trigger: GGAAGCTAGGGACCAAGTGCAGTCTTTAGATGGGCT...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR CCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTGGCGTTTTTGACCTTTaGAAGGTTTGGACAGCACCA +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLGVFDL*KVWTAP
Trigger: TGGTGCTGTCCAAACCTTCCAAAGGTCAAAAACGCC...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACCACCAGGTCTTCTGGTaGCTTCAGAGCTGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHHQVFW*LQSWRK
Trigger: TTTCCTCCAGCTCTGAAGCCACCAGAAGACCTGGTG...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTTCTTTCCAGATCCTCTaGGTGAAGAGCCTGTATGGC +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCSFQIL*VKSLYG
Trigger: GCCATACAGGCTCTTCACCCAGAGGATCTGGAAAGA...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGCTCTACCACAGCTGTaGTTGCCTTGGATGTGCTGC +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKALPQL*LPWMCC
Trigger: GCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGAGAGGTGGCGTTTTTaGCCTTTGGAAGGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHERWRF*PLEGLD
Trigger: GTCCAAACCTTCCAAAGGTCAAAAACGCCACCTCTC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTGAGGACATGCCAATCTaGCACACCACGAGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFEDMPI*HTTRSS
Trigger: AGAGGACCTCGTGGTGTGTCAGATTGGCATGTCCTC...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTGGCATTGTGAACTTTTaGCAGATGGATAAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPGIVNF*QMDKWA
Trigger: AGCCCACTTATCCATCTGTCAAAAGTTCACAATGCC...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGTAAGCCTCCTCTGCTaGGCGGCCCTGAATTTCATT +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKVSLLC*AALNFI
Trigger: AATGAAATTCAGGGCCGCTCAGCAGAGGAGGCTTAC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTACTTCTGGGCAATCTaGTGTATTTGCTTCCGTTCA +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLYFWAI*CICFRS
Trigger: TGAACGGAAGCAAATACATCAGATTGCCCAGAAGTA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTCATGGCCCACCCCATaGGACTTACTCTTAAGACCA +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHSWPTP*DLLLRP
Trigger: TGGTCTTAAGAGTAAGTCTCATGGGGTGGGCCATGA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCCTTCCTGTTTGAGCTaGTCTAGTAGGTCTTCCTTC +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNPSCLS*SSRSSF
Trigger: GAAGGAAGACCTACTAGATCAGCTCAAACAGGAAGG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAAGTGCTCTCTCAGCGTaGAGACTAGAATTTGTTAAA +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAASALSA*RLEFVK
Trigger: TTTAACAAATTCTAGTCTTCACGCTGAGAGAGCACT...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGAATGGAGAGTTGCTGTaGGTCTCTCTGCAAGGCACC +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKNGELL*VSLQGT
Trigger: GGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATT...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACCCTGCTGTGATGTGGTaGTTGGGGCAGGGTTCCCAC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNPAVMW*LGQGSH
Trigger: GTGGGAACCCTGCCCCAAGCACCACATCACAGCAGG...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTTCCTCTCCAAATGTATaGTTGAATTTCCGCCGGACA +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLSSPNV*LNFRRT
Trigger: TGTCCGGCGGAAATTCAAGCATACATTTGGAGAGGA...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGCTCGACAACGCCATGTaGGATTTGGCATCATCTCAT +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMLDNAM*DLASSH
Trigger: ATGAGATGATGCCAAATCGCACATGGCGTTGTCGAG...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCTCGACAACGCCATGTaGGATTTGGCATCATCTCAT +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCLDNAM*DLASSH
Trigger: ATGAGATGATGCCAAATCGCACATGGCGTTGTCGAG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGCTGTGTCGTTCAGCGTaGACACGGGATTTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMLCRSA*TRDLKN
Trigger: ATTCTTCAAATCCCGTGTGCACGCTGAACGACACAG...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGCCCTTCCCGCTTATaGTGCTCTTTCACTGAGATA +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNSPSRL*CSFTEI
Trigger: TATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCT...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTTGCCTTGGATGTGCTaGACATCCAAACCGTGTGAA +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMLPWMC*TSKPCE
Trigger: TTCACACGGTTTGGATGTGCAGCACATCCAAGGCAA...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTCTTTCCAGATCCTCTaGGTGAAGAGCCTGTATGGC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHSFQIL*VKSLYG
Trigger: GCCATACAGGCTCTTCACCCAGAGGATCTGGAAAGA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTCTAAAGACTGCACTTaGTCCCTAGCTTCCAAGAGT +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPSKDCT*SLASKS
Trigger: ACTCTTGGAAGCTAGGGACCAAGTGCAGTCTTTAGA...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTTTTTCCATCAAGCGTaGGCTGTACCTGAAGATGAG +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPFFHQA*AVPEDE
Trigger: CTCATCTTCAGGTACAGCCCACGCTTGATGGAAAAA...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACCTCCAAATGTATGCTTaGATTTCCGCCGGACAACTC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHLQMYA*ISAGQL
Trigger: GAGTTGTCCGGCGGAAATTCAAGCATACATTTGGAG...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGTCATTCGGTTAAACTaGGCTGTGTCGTTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKVIRLN*AVSFSV
Trigger: CACGCTGAACGACACAGCTCAGTTTAACCGAATGAC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCAGCAGCTTCATATTTaGCAGTTTTCTTCACCCCAA +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPQQLHI*QFSSPQ
Trigger: TTGGGGTGAAGAAAACTGTCAAATATGAAGCTGCTG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGATTCATAGGAGGACATaGCAATCTGACACACCACGA +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMIHRRT*QSDTPR
Trigger: TCGTGGTGTGTCAGATTGGCATGTCCTCCTATGAAT...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTTGCCTTGGATGTGCTaGACATCCAAACCGTGTGAA +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHLPWMC*TSKPCE
Trigger: TTCACACGGTTTGGATGTGCAGCACATCCAAGGCAA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTACCACAGCTGTGGTTaGCTTGGATGTGCTGCACAT +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKYHSCG*LGCAAH
Trigger: ATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGACCTTTGGAAGGTTTaGACAGCACCAGATCATATG +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCDLWKV*TAPDHM
Trigger: CATATGATCTGGTGCTGTCCAAACCTTCCAAAGGTC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTGTCAAAATACATGTTaGCTGTTACAGGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLCQNTC*LLQAGL
Trigger: AAGACCAGCCTGTAACAGCCAACATGTATTTTGACA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTGGTGAAGAGCCTGTATaGCATTGTGAACTTTTGACA +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPGEEPV*HCELLT
Trigger: TGTCAAAAGTTCACAATGCCATACAGGCTCTTCACC...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGCAGCTGTGGTTGCCTTaGATGTGCTGCACATCCAAA +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKQLWLP*MCCTSK
Trigger: TTTGGATGTGCAGCACATCCAAGGCAACCACAGCTG...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTTGACCATCACATGTTaGGAGGTGGCGTTTTTGACC +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKLTITC*EVAFLT
Trigger: GGTCAAAAACGCCACCTCTCAACATGTGATGGTCAA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCGTGCACACGGGATTTaGAGAATTCTCATAAACTAC +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNRAHGI*RILINY
Trigger: GTAGTTTATGAGAATTCTTCAAATCCCGTGTGCACG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGCAGCAGCTTCATATTTaGCAGTTTTCTTCACCCCAA +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMQQLHI*QFSSPQ
Trigger: TTGGGGTGAAGAAAACTGTCAAATATGAAGCTGCTG...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAAACTACTAAAATCTaGGGGACACAGCAATATCAA +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLQTTKI*GTQQYQ
Trigger: TTGATATTGCTGTGTCCCTCAGATTTTAGTAGTTTG...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTCCTCTCCAAATGTATaGTTGAATTTCCGCCGGACA +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHSSPNV*LNFRRT
Trigger: TGTCCGGCGGAAATTCAAGCATACATTTGGAGAGGA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGCATTAAAAATTGGCTaGCCGGAAGCATCTTTACCC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHALKIG*PEASLP
Trigger: GGGTAAAGATGCTTCCGGGCAGCCAATTTTTAATGC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTCTCTAGAATCACTTTaGATTTCCAGCGGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKSLESL*ISSGGL
Trigger: CAGGCCTCCGCTGGAAATGCAAAGTGATTCTAGAGA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTTTTTCCATCAAGCGTaGGCTGTACCTGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSFFHQA*AVPAAQ
Trigger: CTGGGCTGCAGGTACAGCCCACGCTTGATGGAAAAA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS-3UTR CCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTTGGTAGATGTCTCTTaGCATGCTGGCAAAATGTGT +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMLVDVS*HAGKMC
Trigger: ACACATTTTGCCAGCATGCCAAGAGACATCTACCAA...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTTTGGCTGTTACAGGCTaGTCTTTTGTGAGAATGAAT +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLLAVTG*SFVRMN
Trigger: ATTCATTCTCACAAAAGACCAGCCTGTAACAGCCAA...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTCCAGAAGTCATTTCTaGATTAGAAAGGTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLSRSHF*IRKVLP
Trigger: TGGAAGAACCTTTCTAATCCAGAAATGACTTCTGGA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGGGTGAAGAGCCTGTATaGCATTGTGAACTTTTGACA +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMGEEPV*HCELLT
Trigger: TGTCAAAAGTTCACAATGCCATACAGGCTCTTCACC...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAGTTCAATATCTCTCTTaGCAATTTTATTCACCCTCT +
Preference number: 4 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAVQYLS*QFYSPS
Trigger: AGAGGGTGAATAAAATTGCCAAGAGAGATATTGAAC...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACCGTGCACACGGGATTTaGAGAATTCTCATAAACTAC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHRAHGI*RILINY
Trigger: GTAGTTTATGAGAATTCTTCAAATCCCGTGTGCACG...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACATGCTGCTCTTTCACTaGGATAGGCTCCCGTATGCC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNMLLFH*DRLPYA
Trigger: GGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCAT...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTCTGTGTCGTTCAGCGTaGACACGGGATTTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFLCRSA*TRDLKN
Trigger: ATTCTTCAAATCCCGTGTGCACGCTGAACGACACAG...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACTTTCTTCACCCCAACTaGTTCTGCAATTACTTCACT +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNFLHPN*FCNYFT
Trigger: AGTGAAGTAATTGCAGAAGCAGTTGGGGTGAAGAAA...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTAGTAAGATCTCAATTTaGTTGAGGCATAACAAGCTC +
Preference number: 4 (lower is better)
Translates to: STNVSSVFYQALPQLWLPSKISI*LRHNKL
Trigger: GAGCTTGTTATGCCTCAAGCAAATTGAGATCTTACT...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCATATTGTTGCAGATTaGTGTGCTATGCCCTTTAAA +
Preference number: 4 (lower is better)
Translates to: AVSLSARHQEQTVQASFLHIVAD*CAMPFK
Trigger: TTTAAAGGGCATAGCACAGCAATCTGCAACAATATG...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTTGCTGTGAGTCTCTCTaGAAGGCACCAAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFCCESL*KAPRTN
Trigger: GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCA...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTACCACAGCTGTGGTTaGCTTGGATGTGCTGCACAT +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSYHSCG*LGCAAH
Trigger: ATGTGCAGCACATCCAAGGCAACCACAGCTGTGGTA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGACCTTTGGAAGGTTTaGACAGCACCAGATCATATG +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKDLWKV*TAPDHM
Trigger: CATATGATCTGGTGCTGTCCAAACCTTCCAAAGGTC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACTTGGCTGTTACAGGCTaGTCTTTTGTGAGAATGAAT +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNLAVTG*SFVRMN
Trigger: ATTCATTCTCACAAAAGACCAGCCTGTAACAGCCAA...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTTGTCAAAATACATGTTaGCTGTTACAGGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCCQNTC*LLQAGL
Trigger: AAGACCAGCCTGTAACAGCCAACATGTATTTTGACA...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTTGGTGGCTTCAGAGCTaGAGGAAATTCATAGGAGGA +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFWWLQS*RKFIGG
Trigger: TCCTCCTATGAATTTCCTCCAGCTCTGAAGCCACCA...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACACGCCATGTGCGATTTaGCATCATCTCATATTTGTA +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNTPCAI*HHLIFV
Trigger: TACAAATATGAGATGATGCCAAATCGCACATGGCGT...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTACGCCATGTGCGATTTaGCATCATCTCATATTTGTA +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCTPCAI*HHLIFV
Trigger: TACAAATATGAGATGATGCCAAATCGCACATGGCGT...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTTCCCTTTCTTCTATATaGAAGCTGCAGCCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFSLSSI*KLQPRK
Trigger: CTTCCTGGGCTGCAGCTTCCATATAGAAGAAAGGGA...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCCAGCACCAGATCATATaGAGGCATCTCCCCAATATC +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSQHQII*RHLPNI
Trigger: GATATTGGGGAGATGCCTTCATATGATCTGGTGCTG...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTTTTTAGGAGGATTTTaGCCATCACATGTTGAGAGG +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHFLGGF*PSHVER
Trigger: CCTCTCAACATGTGATGGTCAAAATCCTCCTAAAAA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCCTTGGCCTTCCTGTTTaGGCTGATCTAGTAGGTCTT +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSLGLPV*ADLVGL
Trigger: AAGACCTACTAGATCAGCTCAAACAGGAAGGCCAAG...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCAAACTACTAAAATCTaGGGGACACAGCAATATCAA +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNQTTKI*GTQQYQ
Trigger: TTGATATTGCTGTGTCCCTCAGATTTTAGTAGTTTG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTACTTCAATACGTTTCTaGAAGAGTTTTACAGCTAGC +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCTSIRF*KSFTAS
Trigger: GCTAGCTGTAAAACTCTTGCAGAAACGTATTGAAGT...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTATTCATAGGAGGACATaGCAATCTGACACACCACGA +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFIHRRT*QSDTPR
Trigger: TCGTGGTGTGTCAGATTGGCATGTCCTCCTATGAAT...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTTTCTTCACCCCAACTaGTTCTGCAATTACTTCACT +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHFLHPN*FCNYFT
Trigger: AGTGAAGTAATTGCAGAAGCAGTTGGGGTGAAGAAA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACCCTTCCCGCTTATGCTaGTCTTTCACTGAGATAGGC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNPSRLC*SFTEIG
Trigger: GCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGG...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCAGCCCTTCCCGCTTATaGTGCTCTTTCACTGAGATA +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSSPSRL*CSFTEI
Trigger: TATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCT...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGAGTAAGATCTCAATTTaGTTGAGGCATAACAAGCTC +
Preference number: 4 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMSKISI*LRHNKL
Trigger: GAGCTTGTTATGCCTCAAGCAAATTGAGATCTTACT...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACAAACGAGGTCTCGCATaGAATTTGGAACCGGCTTGC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNKRGLA*NLEPAC
Trigger: GCAAGCCGGTTCCAAATTCCATGCGAGACCTCGTTT...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTTGGTAGATGTCTCTTaGCATGCTGGCAAAATGTGT +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKLVDVS*HAGKMC
Trigger: ACACATTTTGCCAGCATGCCAAGAGACATCTACCAA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTGGTGGCTTCAGAGCTaGAGGAAATTCATAGGAGGA +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSWWLQS*RKFIGG
Trigger: TCCTCCTATGAATTTCCTCCAGCTCTGAAGCCACCA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACTTGACCATCACATGTTaGGAGGTGGCGTTTTTGACC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNLTITC*EVAFLT
Trigger: GGTCAAAAACGCCACCTCTCAACATGTGATGGTCAA...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACCCTTCCTGTTTGAGCTaGTCTAGTAGGTCTTCCTTC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNPSCLS*SSRSSF
Trigger: GAAGGAAGACCTACTAGATCAGCTCAAACAGGAAGG...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACACTTCAATACGTTTCTaGAAGAGTTTTACAGCTAGC +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHTSIRF*KSFTAS
Trigger: GCTAGCTGTAAAACTCTTGCAGAAACGTATTGAAGT...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCTGCACAATATCATCTaGTGGATTAAGCTAATACAA +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCLHNII*WIKLIQ
Trigger: TTGTATTAGCTTAATCCAGCAGATGATATTGTGCAG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACCATATTGTTGCAGATTaGTGTGCTATGCCCTTTAAA +
Preference number: 4 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHHIVAD*CAMPFK
Trigger: TTTAAAGGGCATAGCACAGCAATCTGCAACAATATG...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACTGCTGTGAGTCTCTCTaGAAGGCACCAAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNCCESL*KAPRTN
Trigger: GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCA...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACGGCGTTTTTGACCTTTaGAAGGTTTGGACAGCACCA +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNGVFDL*KVWTAP
Trigger: TGGTGCTGTCCAAACCTTCCAAAGGTCAAAAACGCC...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTTAATGACAGTTGGCTaGGTCTTTTTGAGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKLMTVG*VFLRVF
Trigger: GAAAACCCTCAAAAAGACCCAGCCAACTGTCATTAA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCACAATATCATCTGCTaGATTAAGCTAATACAAGTG +
Preference number: 4 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCHNIIC*IKLIQV
Trigger: CACTTGTATTAGCTTAATCCAGCAGATGATATTGTG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCACAATATCATCTGCTaGATTAAGCTAATACAAGTG +
Preference number: 4 (lower is better)
Translates to: KAIMESCCESLCKAPRTNHNIIC*IKLIQV
Trigger: CACTTGTATTAGCTTAATCCAGCAGATGATATTGTG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTTTTTTAGGAGGATTTTaGCCATCACATGTTGAGAGG +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFFLGGF*PSHVER
Trigger: CCTCTCAACATGTGATGGTCAAAATCCTCCTAAAAA...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
39% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTACTTCTGGGCAATCTaGTGTATTTGCTTCCGTTCA +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSYFWAI*CICFRS
Trigger: TGAACGGAAGCAAATACATCAGATTGCCCAGAAGTA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGAACTTTACATATTGTTaGAGATTGCTGTGCTATGCC +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKNFTYC*RLLCYA
Trigger: GGCATAGCACAGCAATCTGCAACAATATGTAAAGTT...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTCCAGAAGTCATTTCTaGATTAGAAAGGTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKSRSHF*IRKVLP
Trigger: TGGAAGAACCTTTCTAATCCAGAAATGACTTCTGGA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTAGAAGCATTAAAAATTaGCTGCCCGGAAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFRSIKN*LPGSIF
Trigger: AAAGATGCTTCCGGGCAGCCAATTTTTAATGCTTCT...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTTTAATGACAGTTGGCTaGGTCTTTTTGAGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFLMTVG*VFLRVF
Trigger: GAAAACCCTCAAAAAGACCCAGCCAACTGTCATTAA...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
3UTR CAA 72 bp GTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTTaGAAACTTTCAACTGCTCTCTCAAGTAGTGCTCTC +
Preference number: 4 (lower is better)
Translates to: VQASFLQIEPKF*KLSTALSSSAL
Trigger: GAGAGCACTACTTGAGAGAGCAGTTGAAAGTTTCAAAAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCAGAAGCATTAAAAATTaGCTGCCCGGAAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSRSIKN*LPGSIF
Trigger: AAAGATGCTTCCGGGCAGCCAATTTTTAATGCTTCT...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGTTCAATATCTCTCTTaGCAATTTTATTCACCCTCT +
Preference number: 4 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKVQYLS*QFYSPS
Trigger: AGAGGGTGAATAAAATTGCCAAGAGAGATATTGAAC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTTTGTCTTACACGCCTaGATACAACGAGTTAACATA +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSFVLHA*IQRVNI
Trigger: TATGTTAACTCGTTGTATTCAGGCGTGTAAGACAAA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR GCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCAACTTTACATATTGTTaGAGATTGCTGTGCTATGCC +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSNFTYC*RLLCYA
Trigger: GGCATAGCACAGCAATCTGCAACAATATGTAAAGTT...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR TCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACTTTGTCTTACACGCCTaGATACAACGAGTTAACATA +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNFVLHA*IQRVNI
Trigger: TATGTTAACTCGTTGTATTCAGGCGTGTAAGACAAA...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCGTTTACTTGTTTTCTTaGTTCCATAACCTTCAGCTA +
Preference number: 4 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSVYLFS*FHNLQL
Trigger: TAGCTGAAGGTTATGGAACCAAGAAAACAAGTAAAC...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CCA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACGTTTACTTGTTTTCTTaGTTCCATAACCTTCAGCTA +
Preference number: 4 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNVYLFS*FHNLQL
Trigger: TAGCTGAAGGTTATGGAACCAAGAAAACAAGTAAAC...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS CCA 90 bp CCACTGCCAGTCACTTTCGTGGCTATAGCGCCACTGCTCCAGCACTaGCTCGGGCGGGGGCGGCGGGAGGGGCGGCAGCGGCGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: PLPVTFVAIAPLLQH*LGRGRREGRQRRRR
Trigger: CCGCCGCCGCCGCTGCCGCCCCTCCCGCCGCCCCCGCCCGAGCCAGTGCTGGAGCAGTGGCGCTATAGCCACGAAAGTGACTGGCAGTGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS CCA 90 bp GCGTCCCGACACTGGGATGCACGTCCCCTACACTCCTCTAACTCGTaGAGGAGCAGAAGGGCTTCCGCCGCACTCACGCGCGAGCCGGGG +
Preference number: 5 (lower is better)
Translates to: ASRHWDARPLHSSNS*RSRRASAALTREPG
Trigger: CCCCGGCTCGCGCGTGAGTGCGGCGGAAGCCCTTCTGCTCCTCCACGAGTTAGAGGAGTGTAGGGGACGTGCATCCCAGTGTCGGGACGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS TCA 90 bp GCTGGTCGAGGGCAGCCCCGGGATAGCTGTGCAGGTGCCGACAGATaGAGCTGCGCCGCAGAGCCCACTGCCAGTCACTTTCGTGGCTAT +
Preference number: 5 (lower is better)
Translates to: AGRGQPRDSCAGADR*SCAAEPTASHFRGY
Trigger: ATAGCCACGAAAGTGACTGGCAGTGGGCTCTGCGGCGCAGCTTCATCTGTCGGCACCTGCACAGCTATCCCGGGGCTGCCCTCGACCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS CCA 90 bp CCACCGTTAGGAGGAAAAGAGGAGCACGAGCTCGCGTCCCGACACTaGGATGCACGTCCCCTACACTCCTCTAACTCGTGGAGGAGCAGA +
Preference number: 5 (lower is better)
Translates to: PPLGGKEEHELASRH*DARPLHSSNSWRSR
Trigger: TCTGCTCCTCCACGAGTTAGAGGAGTGTAGGGGACGTGCATCCCAGTGTCGGGACGCGAGCTCGTGCTCCTCTTTTCCTCCTAACGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS TCA 90 bp ACAGACTCGGGAAATGTCTGTGATGGTGAAGGCTCAGGAGTTGACTaGGAGTTTGCCTGCTGTGATGTGGTGCTTGGGGCAGGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: TDSGNVCDGEGSGVD*EFACCDVVLGAGFP
Trigger: TGGGAACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCACCATCACAGACATTTCCCGAGTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 90 bp TGGCTGCCCGGAAGCATCTTTACCCAGCACCACCAGGTCTTCTGGTaGCTTCAGAGCTGGAGGAAATTCATAGGAGGACATGCCAATCTG +
Preference number: 5 (lower is better)
Translates to: WLPGSIFTQHHQVFW*LQSWRKFIGGHANL
Trigger: CAGATTGGCATGTCCTCCTATGAATTTCCTCCAGCTCTGAAGCCACCAGAAGACCTGGTGGTGCTGGGTAAAGATGCTTCCGGGCAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 90 bp ATGGTGAAGGCTCAGGAGTTGACTGAGAGTTTGCCTGCTGTGATGTaGTGCTTGGGGCAGGGTTCCCACTGTCAAAATACATGTTGGCTG +
Preference number: 5 (lower is better)
Translates to: MVKAQELTESLPAVM*CLGQGSHCQNTCWL
Trigger: CAGCCAACATGTATTTTGACAGTGGGAACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 90 bp AGCATCTTTACCCAGCACCACCAGGTCTTCTGGTGGCTTCAGAGCTaGAGGAAATTCATAGGAGGACATGCCAATCTGACACACCACGAG +
Preference number: 5 (lower is better)
Translates to: SIFTQHHQVFWWLQS*RKFIGGHANLTHHE
Trigger: CTCGTGGTGTGTCAGATTGGCATGTCCTCCTATGAATTTCCTCCAGCTCTGAAGCCACCAGAAGACCTGGTGGTGCTGGGTAAAGATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS-3UTR CAA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGGCTGTGATGTGGTGCTaGGGGCAGGGTTCCCACTGT +
Preference number: 5 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMAVMWC*GQGSHC
Trigger: ACAGTGGGAACCCTGCCCCAAGCACCACATCACAGC...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCTCGTAATGGCCCACTaGGCCTTCCTGTTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLLVMAH*AFLFEL
Trigger: CAGCTCAAACAGGAAGGCCAAGTGGGCCATTACGAG...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS GCA 90 bp TTATTCACCCTCTCTACATCCAGACCAAGCCCTTCCCGCTTATGCTaGTCTTTCACTGAGATAGGCTCCCGTATGCCCTCACCAGATTTA +
Preference number: 5 (lower is better)
Translates to: LFTLSTSRPSPSRLC*SFTEIGSRMPSPDL
Trigger: TAAATCTGGTGAGGGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCTTGGTCTGGATGTAGAGAGGGTGAATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS GCA 90 bp ATTTTATTCACCCTCTCTACATCCAGACCAAGCCCTTCCCGCTTATaGTGCTCTTTCACTGAGATAGGCTCCCGTATGCCCTCACCAGAT +
Preference number: 5 (lower is better)
Translates to: ILFTLSTSRPSPSRL*CSFTEIGSRMPSPD
Trigger: ATCTGGTGAGGGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCTTGGTCTGGATGTAGAGAGGGTGAATAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 90 bp CCATCTAAAGACTGCACTTGGTCCCTAGCTTCCAAGAGTCTTCATTaGCCCTTCCCTTTCTTCTATATGGAAGCTGCAGCCCAGGAAGAC +
Preference number: 5 (lower is better)
Translates to: PSKDCTWSLASKSLH*PFPFFYMEAAAQED
Trigger: GTCTTCCTGGGCTGCAGCTTCCATATAGAAGAAAGGGAAGGGCCAATGAAGACTCTTGGAAGCTAGGGACCAAGTGCAGTCTTTAGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCACTTGGTAGATGTCTCTaGGCATGCTGGCAAAATGTG +
Preference number: 5 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAALGRCL*ACWQNV
Trigger: CACATTTTGCCAGCATGCCAAGAGACATCTACCAAG...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGCTGTGATGTGGTGCTaGGGGCAGGGTTCCCACTGT +
Preference number: 5 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKAVMWC*GQGSHC
Trigger: ACAGTGGGAACCCTGCCCCAAGCACCACATCACAGC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTGAGTTGACTGAGAGTTaGCCTGCTGTGATGTGGTGC +
Preference number: 5 (lower is better)
Translates to: AVSLSARHQEQTVQASFLELTES*PAVMWC
Trigger: GCACCACATCACAGCAGGCAAACTCTCAGTCAACTC...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCTCTCTAGAATCACTTaGCATTTCCAGCGGAGGCCT +
Preference number: 5 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLLSRIT*HFQRRP
Trigger: AGGCCTCCGCTGGAAATGCAAAGTGATTCTAGAGAG...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGAGTTGACTGAGAGTTaGCCTGCTGTGATGTGGTGC +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCELTES*PAVMWC
Trigger: GCACCACATCACAGCAGGCAAACTCTCAGTCAACTC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGTGAAGGCTCAGGAGTaGACTGAGAGTTTGCCTGCT +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCVKAQE*TESLPA
Trigger: AGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCAC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTGTTGGCTGGGTCTTTTaGAGGGTTTTCACAGCTTCC +
Preference number: 5 (lower is better)
Translates to: AVSLSARHQEQTVQASFLVGWVF*RVFTAS
Trigger: GGAAGCTGTGAAAACCCTCAAAAAGACCCAGCCAAC...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS GCA 90 bp GTATGCTTGAATTTCCGCCGGACAACTCTAACTTCAATACGTTTCTaGAAGAGTTTTACAGCTAGCTCTGTAGCTCGATCCCTGGACCCA +
Preference number: 5 (lower is better)
Translates to: VCLNFRRTTLTSIRF*KSFTASSVARSLDP
Trigger: TGGGTCCAGGGATCGAGCTACAGAGCTAGCTGTAAAACTCTTGCAGAAACGTATTGAAGTTAGAGTTGTCCGGCGGAAATTCAAGCATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCTCTCTAGAATCACTTaGCATTTCCAGCGGAGGCCT +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCLSRIT*HFQRRP
Trigger: AGGCCTCCGCTGGAAATGCAAAGTGATTCTAGAGAG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGTTGGCTGGGTCTTTTaGAGGGTTTTCACAGCTTCC +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCVGWVF*RVFTAS
Trigger: GGAAGCTGTGAAAACCCTCAAAAAGACCCAGCCAAC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS CCA 90 bp GACCATCACATGTTGAGAGGTGGCGTTTTTGACCTTTGGAAGGTTTaGACAGCACCAGATCATATGAAGGCATCTCCCCAATATCAATAC +
Preference number: 5 (lower is better)
Translates to: DHHMLRGGVFDLWKV*TAPDHMKASPQYQY
Trigger: GTATTGATATTGGGGAGATGCCTTCATATGATCTGGTGCTGTCCAAACCTTCCAAAGGTCAAAAACGCCACCTCTCAACATGTGATGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS-3UTR CAA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGGGTCTCGCATGGAATTaGGAACCGGCTTGCTTTTTA +
Preference number: 5 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMGLAWN*EPACFL
Trigger: TAAAAAGCAAGCCGGTTCCAAATTCCATGCGAGACC...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp GCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTTCTCCAAATGTATGCTaGAATTTCCGCCGGACAACT +
Preference number: 5 (lower is better)
Translates to: AVSLSARHQEQTVQASFLSPNVC*NFRRTT
Trigger: AGTTGTCCGGCGGAAATTCAAGCATACATTTGGAGA...AAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCACAGCTGCATGTTTACTaGTTTTCTTGGTTCCATAAC +
Preference number: 5 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAQLHVY*FSWFHN
Trigger: GTTATGGAACCAAGAAAACAAGTAAACATGCAGCTG...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS TCA 90 bp GTGGCGTTTTTGACCTTTGGAAGGTTTGGACAGCACCAGATCATATaGAGGCATCTCCCCAATATCAATACCTTCAGCCATTTGGAGAAT +
Preference number: 5 (lower is better)
Translates to: VAFLTFGRFGQHQII*RHLPNINTFSHLEN
Trigger: ATTCTCCAAATGGCTGAAGGTATTGATATTGGGGAGATGCCTTCATATGATCTGGTGCTGTCCAAACCTTCCAAAGGTCAAAAACGCCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS GCA 90 bp TCACCCCAACTGCTTCTGCAATTACTTCACTCTCTAGAATCACTTTaGATTTCCAGCGGAGGCCTGTCATCCTTTCATAGACATACTCAA +
Preference number: 5 (lower is better)
Translates to: SPQLLLQLLHSLESL*ISSGGLSSFHRHTQ
Trigger: TTGAGTATGTCTATGAAAGGATGACAGGCCTCCGCTGGAAATGCAAAGTGATTCTAGAGAGTGAAGTAATTGCAGAAGCAGTTGGGGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACTTTGACCATCACATGTaGAGAGGTGGCGTTTTTGAC +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNFDHHM*RGGVFD
Trigger: GTCAAAAACGCCACCTCTCAACATGTGATGGTCAAA...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTTTTGACCATCACATGTaGAGAGGTGGCGTTTTTGAC +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCFDHHM*RGGVFD
Trigger: GTCAAAAACGCCACCTCTCAACATGTGATGGTCAAA...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGGTCTTGAGTATAATCTaGGTAGATGTCTCTTGGCAT +
Preference number: 5 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLVLSII*VDVSWH
Trigger: ATGCCAAGAGACATCTACCAAGATTATACTCAAGAC...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACCTGTCAAAATACATGTaGGCTGTTACAGGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNLSKYM*AVTGWS
Trigger: AGACCAGCCTGTAACAGCCAACATGTATTTTGACAG...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGCAATATATACTCAGGATTaGTCTTACACGCCTGAATAC +
Preference number: 5 (lower is better)
Translates to: LQSFTKLYHSCGCLGCAAIYTQD*SYTPEY
Trigger: GTATTCAGGCGTGTAAGACAAATCCTGAGTATATAT...TGCAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGCTGTCTGTAATGACAAAATaGGTCCAGTGTTTGGCAGAA +
Preference number: 5 (lower is better)
Translates to: IFSLLPSSTTAVVALDVLSVMTK*VQCLAE
Trigger: TTCTGCCAAACACTGGACCAATTTTGTCATTACAGA...CAGCACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTGCGTGCACACGGGATTaGAAGAATTCTCATAAACTA +
Preference number: 5 (lower is better)
Translates to: STNVSSVFYQALPQLWLPACTRD*KNSHKL
Trigger: TAGTTTATGAGAATTCTTCAAATCCCGTGTGCACGC...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGGCTTAATAAGCTTTTaGAGAGAGGGACCAGCCAAC +
Preference number: 5 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHGLISF*REGPAN
Trigger: GTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAGCC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS CCA 90 bp GTCTCTATCATTTCTCATGAAATGGAATCAGGGTCCTTAGAGAAATaGCTGATTCTAAGTCTGTGGCAGGAAATGTCTAAGGTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: VSIISHEMESGSLEK*LILSLWQEMSKVSL
Trigger: CAGGCTCACCTTAGACATTTCCTGCCACAGACTTAGAATCAGCCATTTCTCTAAGGACCCTGATTCCATTTCATGAGAAATGATAGAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649446.1
CDS-3UTR CAA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTCTGAGAATTCCCATCTaGTATACTGAAAGAGTCTTG +
Preference number: 5 (lower is better)
Translates to: STNVSSVFYQALPQLWLPLRIPI*YTERVL
Trigger: CAAGACTCTTTCAGTATACAAGATGGGAATTCTCAG...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCGTGAAGGCTCAGGAGTaGACTGAGAGTTTGCCTGCT +
Preference number: 5 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSVKAQE*TESLPA
Trigger: AGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCAC...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACCTCGTAATGGCCCACTaGGCCTTCCTGTTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNLVMAH*AFLFEL
Trigger: CAGCTCAAACAGGAAGGCCAAGTGGGCCATTACGAG...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAACCACTATGTGAAATGAACAAGGTGAGACATCTTATGAATATACTCTGCAACCTACCACAGCTGTGGTaGCCTTGGATGTGCTGCACA +
Preference number: 5 (lower is better)
Translates to: KPLCEMNKVRHLMNILCNLPQLW*PWMCCT
Trigger: TGTGCAGCACATCCAAGGCAACCACAGCTGTGGTAG...GTTGCAGAGTATATTCATAAGATGTCTCACCTTGTTCATTTCACATAGTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGGCTTAATAAGCTTTTaGAGAGAGGGACCAGCCAAC +
Preference number: 5 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKGLISF*REGPAN
Trigger: GTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAGCC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS TCA 90 bp AGGGACCAGCCAACTGACAATACTGAGAATTCCCATCTTGTATACTaGAAGAGTCTTGAGTATAATCTTGGTAGATGTCTCTTGGCATGC +
Preference number: 5 (lower is better)
Translates to: RDQPTDNTENSHLVY*KSLEYNLGRCLLAC
Trigger: GCATGCCAAGAGACATCTACCAAGATTATACTCAAGACTCTTTCAGTATACAAGATGGGAATTCTCAGTATTGTCAGTTGGCTGGTCCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487600.1
CDS GCA 90 bp GAAAGGTTCTTCCAGATTGTCGCCGTTAATTTTTCAATAAAATACTaGTTCTCGGCTACCACAGACTCGGGAAATGTCTGTGATGGTGAA +
Preference number: 5 (lower is better)
Translates to: ERFFQIVAVNFSIKY*FSATTDSGNVCDGE
Trigger: TTCACCATCACAGACATTTCCCGAGTCTGTGGTAGCCGAGAAGCAGTATTTTATTGAAAAATTAACGGCGACAATCTGGAAGAACCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACATTTACCTCTTTTGTTaGAGGGCCATAAGGATCTTC +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNIYLFC*RAIRIF
Trigger: GAAGATCCTTATGGCCCTCAAACAAAAGAGGTAAAT...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCTGAGAATTCCCATCTaGTATACTGAAAGAGTCTTG +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCLRIPI*YTERVL
Trigger: CAAGACTCTTTCAGTATACAAGATGGGAATTCTCAG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCACCAATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTATATATACTCAGGATTaGTCTTACACGCCTGAATAC +
Preference number: 5 (lower is better)
Translates to: STNVSSVFYQALPQLWLPIYTQD*SYTPEY
Trigger: GTATTCAGGCGTGTAAGACAAATCCTGAGTATATAT...AGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATTGGTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACTCTGTAATGACAAAATaGGTCCAGTGTTTGGCAGAA +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNSVMTK*VQCLAE
Trigger: TTCTGCCAAACACTGGACCAATTTTGTCATTACAGA...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTCAGCTGCATGTTTACTaGTTTTCTTGGTTCCATAAC +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCQLHVY*FSWFHN
Trigger: GTTATGGAACCAAGAAAACAAGTAAACATGCAGCTG...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAGTGGGCTGTGTTTTTaGAAGAATTTTCAAAGCCTC +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNSGLCF*KNFQSL
Trigger: GAGGCTTTGAAAATTCTTCAAAAAACACAGCCCACT...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp ATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGTGGCAATCTGATGTATTaGCTTCCGTTCATCATTAGT +
Preference number: 5 (lower is better)
Translates to: MYLQSFTKLYHSCGCLGCGNLMY*LPFIIS
Trigger: ACTAATGATGAACGGAAGCAAATACATCAGATTGCC...ACATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTTCCAAGAGTCTTCATaGGCCCTTCCCTTTCTTCTA +
Preference number: 5 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKFQESS*ALPFLL
Trigger: TAGAAGAAAGGGAAGGGCCAATGAAGACTCTTGGAA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCGGTCTCGCATGGAATTaGGAACCGGCTTGCTTTTTA +
Preference number: 5 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSGLAWN*EPACFL
Trigger: TAAAAAGCAAGCCGGTTCCAAATTCCATGCGAGACC...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGTTCATTTACCTCTTTaGTTTGAGGGCCATAAGGAT +
Preference number: 5 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHVHLPL*FEGHKD
Trigger: ATCCTTATGGCCCTCAAACAAAAGAGGTAAATGAAC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTCTGTCAAAATACATGTaGGCTGTTACAGGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFLSKYM*AVTGWS
Trigger: AGACCAGCCTGTAACAGCCAACATGTATTTTGACAG...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACAAAGGTTCTTCCAGATaGTCGCCGTTAATTTTTCAA +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNKGSSR*SPLIFQ
Trigger: TTGAAAAATTAACGGCGACAATCTGGAAGAACCTTT...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AAAGCTATAATGGAGAGTTGCTGTGAGTCTCTCTGCAAGGCACCAAGAACAAACTTGAATGAGGCAGAATaGTTAAGGATACCAATTGCA +
Preference number: 5 (lower is better)
Translates to: KAIMESCCESLCKAPRTNLNEAE*LRIPIA
Trigger: TGCAATTGGTATCCTTAACAATTCTGCCTCATTCAA...GTTTGTTCTTGGTGCCTTGCAGAGAGACTCACAGCAACTCTCCATTATAGCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGCGTGCACACGGGATTaGAAGAATTCTCATAAACTA +
Preference number: 5 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKACTRD*KNSHKL
Trigger: TAGTTTATGAGAATTCTTCAAATCCCGTGTGCACGC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AATGTATCTTCAGTCTTTTACCAAGCTCTACCACAGCTGTGGTTGCCTTGGATGATTATCTTCTTTGATTaGCTGTTTGTAAGCCTCCTC +
Preference number: 5 (lower is better)
Translates to: NVSSVFYQALPQLWLPWMIIFFD*LFVSLL
Trigger: GAGGAGGCTTACAAACAGCAAATCAAAGAAGATAAT...CATCCAAGGCAACCACAGCTGTGGTAGAGCTTGGTAAAAGACTGAAGATACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACGGCAATCTGATGTATTaGCTTCCGTTCATCATTAGT +
Preference number: 5 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHGNLMY*LPFIIS
Trigger: ACTAATGATGAACGGAAGCAAATACATCAGATTGCC...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGGTTCATTTACCTCTTTaGTTTGAGGGCCATAAGGAT +
Preference number: 5 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKVHLPL*FEGHKD
Trigger: ATCCTTATGGCCCTCAAACAAAAGAGGTAAATGAAC...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGGCACCAAGAACAAACAGTTCAAGCTTCCTTTCTTCAGATTGAACCAAAGTTTAACGCCATGTGCGATTaGGCATCATCTCATATTTGT +
Preference number: 5 (lower is better)
Translates to: RHQEQTVQASFLQIEPKFNAMCD*ASSHIC
Trigger: ACAAATATGAGATGATGCCAAATCGCACATGGCGTT...AAACTTTGGTTCAATCTGAAGAAAGGAAGCTTGAACTGTTTGTTCTTGGTGCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CTTAATAAGCTTTTTGAGAGAGGGACCAGCCAACTGACCTTTTCATCAAAGCACTGTTCAATATCTCTCTaGGCAATTTTATTCACCCTC +
Preference number: 5 (lower is better)
Translates to: LNKLFERGTSQLTFSSKHCSISL*AILFTL
Trigger: GAGGGTGAATAAAATTGCCAAGAGAGATATTGAACA...GTGCTTTGATGAAAAGGTCAGTTGGCTGGTCCCTCTCTCAAAAAGCTTATTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS TCA 90 bp CATTCGGTTAAACTGAGCTGTGTCGTTCAGCGTGCACACGGGATTTaGAGAATTCTCATAAACTACAAGATCCTTTATATCTTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: HSVKLSCVVQRAHGI*RILINYKILYIFLL
Trigger: AAGAAGAAAGATATAAAGGATCTTGTAGTTTATGAGAATTCTTCAAATCCCGTGTGCACGCTGAACGACACAGCTCAGTTTAACCGAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS-3UTR CAA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCAACGCCATGTGCGATTaGGCATCATCTCATATTTGT +
Preference number: 5 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSNAMCD*ASSHIC
Trigger: ACAAATATGAGATGATGCCAAATCGCACATGGCGTT...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp CAGCCAACTGACCTTTTCATCAAAGCACCAATGTATCTTCAGTCTTTTACCAAGTGTTCAATATCTCTCTaGGCAATTTTATTCACCCTC +
Preference number: 5 (lower is better)
Translates to: QPTDLFIKAPMYLQSFTKCSISL*AILFTL
Trigger: GAGGGTGAATAAAATTGCCAAGAGAGATATTGAACA...CTTGGTAAAAGACTGAAGATACATTGGTGCTTTGATGAAAAGGTCAGTTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCGTCTTGAGTATAATCTaGGTAGATGTCTCTTGGCAT +
Preference number: 5 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSVLSII*VDVSWH
Trigger: ATGCCAAGAGACATCTACCAAGATTATACTCAAGAC...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCAAAGGTTCTTCCAGATaGTCGCCGTTAATTTTTCAA +
Preference number: 5 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSKGSSR*SPLIFQ
Trigger: TTGAAAAATTAACGGCGACAATCTGGAAGAACCTTT...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS-3UTR CAA 90 bp AGCAATATCAAAGACACAAACAGTAACTGCACAATATCATCTGCTGGATTAAGCTTGAATGAGGCAGAATaGTTAAGGATACCAATTGCA +
Preference number: 5 (lower is better)
Translates to: SNIKDTNSNCTISSAGLSLNEAE*LRIPIA
Trigger: TGCAATTGGTATCCTTAACAATTCTGCCTCATTCAA...GCTTAATCCAGCAGATGATATTGTGCAGTTACTGTTTGTGTCTTTGATATTGCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS CCA 72 bp GTCACTTTCGTGGCTATAGCGCCACTGCTCCAGCACTaGCTCGGGCGGGGGCGGCGGGAGGGGCGGCAGCGG +
Preference number: 6 (lower is better)
Translates to: VTFVAIAPLLQH*LGRGRREGRQR
Trigger: CCGCTGCCGCCCCTCCCGCCGCCCCCGCCCGAGCCAGTGCTGGAGCAGTGGCGCTATAGCCACGAAAGTGAC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS GCA 72 bp GGCTCCGCACCTCCACGGATCCGCAGACCCACGCACTaGGCGGAGAGCGATAAAAGACCCCAGCACGCTCTG +
Preference number: 6 (lower is better)
Translates to: GSAPPRIRRPTH*AESDKRPQHAL
Trigger: CAGAGCGTGCTGGGGTCTTTTATCGCTCTCCGCGCAGTGCGTGGGTCTGCGGATCCGTGGAGGTGCGGAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS TCA 72 bp GGGCAGCCCCGGGATAGCTGTGCAGGTGCCGACAGATaGAGCTGCGCCGCAGAGCCCACTGCCAGTCACTTT +
Preference number: 6 (lower is better)
Translates to: GQPRDSCAGADR*SCAAEPTASHF
Trigger: AAAGTGACTGGCAGTGGGCTCTGCGGCGCAGCTTCATCTGTCGGCACCTGCACAGCTATCCCGGGGCTGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304449.8
ENST00000542113.3
CDS CCA 72 bp CACTGGGATGCACGTCCCCTACACTCCTCTAACTCGTaGAGGAGCAGAAGGGCTTCCGCCGCACTCACGCGC +
Preference number: 6 (lower is better)
Translates to: HWDARPLHSSNS*RSRRASAALTR
Trigger: GCGCGTGAGTGCGGCGGAAGCCCTTCTGCTCCTCCACGAGTTAGAGGAGTGTAGGGGACGTGCATCCCAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS CCA 72 bp GGAGGAAAAGAGGAGCACGAGCTCGCGTCCCGACACTaGGATGCACGTCCCCTACACTCCTCTAACTCGTGG +
Preference number: 6 (lower is better)
Translates to: GGKEEHELASRH*DARPLHSSNSW
Trigger: CCACGAGTTAGAGGAGTGTAGGGGACGTGCATCCCAGTGTCGGGACGCGAGCTCGTGCTCCTCTTTTCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304449.8
CDS GCA 72 bp ACCCTCTCTACATCCAGACCAAGCCCTTCCCGCTTATaGTGCTCTTTCACTGAGATAGGCTCCCGTATGCCC +
Preference number: 6 (lower is better)
Translates to: TLSTSRPSPSRL*CSFTEIGSRMP
Trigger: GGGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCTTGGTCTGGATGTAGAGAGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp CGGGAAATGTCTGTGATGGTGAAGGCTCAGGAGTTGACTGAGAGTTaGCCTGCTGTGATGTGGTGCTTGGGGCAGGGTTCCCACTGTCAA +
Preference number: 6 (lower is better)
Translates to: REMSVMVKAQELTES*PAVMWCLGQGSHCQ
Trigger: TTGACAGTGGGAACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCACCATCACAGACATTTCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp CTACCACAGACTCGGGAAATGTCTGTGATGGTGAAGGCTCAGGAGTaGACTGAGAGTTTGCCTGCTGTGATGTGGTGCTTGGGGCAGGGT +
Preference number: 6 (lower is better)
Translates to: LPQTREMSVMVKAQE*TESLPAVMWCLGQG
Trigger: ACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCACCATCACAGACATTTCCCGAGTCTGTGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS TCA 72 bp CAGACCAAGCCCTTCCCGCTTATGCTGCTCTTTCACTaGGATAGGCTCCCGTATGCCCTCACCAGATTTACC +
Preference number: 6 (lower is better)
Translates to: QTKPFPLMLLFH*DRLPYALTRFT
Trigger: GGTAAATCTGGTGAGGGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCTTGGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS GCA 72 bp CTCTCTACATCCAGACCAAGCCCTTCCCGCTTATGCTaGTCTTTCACTGAGATAGGCTCCCGTATGCCCTCA +
Preference number: 6 (lower is better)
Translates to: LSTSRPSPSRLC*SFTEIGSRMPS
Trigger: TGAGGGCATACGGGAGCCTATCTCAGTGAAAGAGCAGCATAAGCGGGAAGGGCTTGGTCTGGATGTAGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 72 bp GCTCAGGAGTTGACTGAGAGTTTGCCTGCTGTGATGTaGTGCTTGGGGCAGGGTTCCCACTGTCAAAATACA +
Preference number: 6 (lower is better)
Translates to: AQELTESLPAVM*CLGQGSHCQNT
Trigger: TGTATTTTGACAGTGGGAACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp AAGGCTCAGGAGTTGACTGAGAGTTTGCCTGCTGTGATGTGGTGCTaGGGGCAGGGTTCCCACTGTCAAAATACATGTTGGCTGTTACAG +
Preference number: 6 (lower is better)
Translates to: KAQELTESLPAVMWC*GQGSHCQNTCWLLQ
Trigger: CTGTAACAGCCAACATGTATTTTGACAGTGGGAACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS GCA 72 bp GTGGCTTCAGAGCTGGAGGAAATTCATAGGAGGACATaGCAATCTGACACACCACGAGGTCCTCTCCAAATG +
Preference number: 6 (lower is better)
Translates to: VASELEEIHRRT*QSDTPRGPLQM
Trigger: CATTTGGAGAGGACCTCGTGGTGTGTCAGATTGGCATGTCCTCCTATGAATTTCCTCCAGCTCTGAAGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 72 bp GGAAGCATCTTTACCCAGCACCACCAGGTCTTCTGGTaGCTTCAGAGCTGGAGGAAATTCATAGGAGGACAT +
Preference number: 6 (lower is better)
Translates to: GSIFTQHHQVFW*LQSWRKFIGGH
Trigger: ATGTCCTCCTATGAATTTCCTCCAGCTCTGAAGCCACCAGAAGACCTGGTGGTGCTGGGTAAAGATGCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 72 bp GACTGCACTTGGTCCCTAGCTTCCAAGAGTCTTCATTaGCCCTTCCCTTTCTTCTATATGGAAGCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: DCTWSLASKSLH*PFPFFYMEAAA
Trigger: GGCTGCAGCTTCCATATAGAAGAAAGGGAAGGGCCAATGAAGACTCTTGGAAGCTAGGGACCAAGTGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS CAA 72 bp GAGTTGACTGAGAGTTTGCCTGCTGTGATGTGGTGCTaGGGGCAGGGTTCCCACTGTCAAAATACATGTTGG +
Preference number: 6 (lower is better)
Translates to: ELTESLPAVMWC*GQGSHCQNTCW
Trigger: CCAACATGTATTTTGACAGTGGGAACCCTGCCCCAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 72 bp ACTCGGGAAATGTCTGTGATGGTGAAGGCTCAGGAGTaGACTGAGAGTTTGCCTGCTGTGATGTGGTGCTTG +
Preference number: 6 (lower is better)
Translates to: TREMSVMVKAQE*TESLPAVMWCL
Trigger: CAAGCACCACATCACAGCAGGCAAACTCTCAGTCAACTCCTGAGCCTTCACCATCACAGACATTTCCCGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 72 bp AGACTGCACTTGGTCCCTAGCTTCCAAGAGTCTTCATaGGCCCTTCCCTTTCTTCTATATGGAAGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: RLHLVPSFQESS*ALPFLLYGSCS
Trigger: GCTGCAGCTTCCATATAGAAGAAAGGGAAGGGCCAATGAAGACTCTTGGAAGCTAGGGACCAAGTGCAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542113.3
CDS TCA 72 bp CTACCTACCACTAGGTACCTATCATGGCCCACCCCATaGGACTTACTCTTAAGACCATACTTCTGGGCAATC +
Preference number: 6 (lower is better)
Translates to: LPTTRYLSWPTP*DLLLRPYFWAI
Trigger: GATTGCCCAGAAGTATGGTCTTAAGAGTAAGTCTCATGGGGTGGGCCATGATAGGTACCTAGTGGTAGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 72 bp GACCATCACATGTTGAGAGGTGGCGTTTTTGACCTTTaGAAGGTTTGGACAGCACCAGATCATATGAAGGCA +
Preference number: 6 (lower is better)
Translates to: DHHMLRGGVFDL*KVWTAPDHMKA
Trigger: TGCCTTCATATGATCTGGTGCTGTCCAAACCTTCCAAAGGTCAAAAACGCCACCTCTCAACATGTGATGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS TCA 72 bp TTGACCTTTGGAAGGTTTGGACAGCACCAGATCATATaGAGGCATCTCCCCAATATCAATACCTTCAGCCAT +
Preference number: 6 (lower is better)
Translates to: LTFGRFGQHQII*RHLPNINTFSH
Trigger: ATGGCTGAAGGTATTGATATTGGGGAGATGCCTTCATATGATCTGGTGCTGTCCAAACCTTCCAAAGGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 72 bp AAGCCTCGTCGGCAGCTGCATGTTTACTTGTTTTCTTaGTTCCATAACCTTCAGCTAAGCAGTGATCTTGTA +
Preference number: 6 (lower is better)
Translates to: KPRRQLHVYLFS*FHNLQLSSDLV
Trigger: TACAAGATCACTGCTTAGCTGAAGGTTATGGAACCAAGAAAACAAGTAAACATGCAGCTGCCGACGAGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 72 bp GAATTTTCAAAGCCTCGTCGGCAGCTGCATGTTTACTaGTTTTCTTGGTTCCATAACCTTCAGCTAAGCAGT +
Preference number: 6 (lower is better)
Translates to: EFSKPRRQLHVY*FSWFHNLQLSS
Trigger: ACTGCTTAGCTGAAGGTTATGGAACCAAGAAAACAAGTAAACATGCAGCTGCCGACGAGGCTTTGAAAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS TCA 72 bp CAAAGGTGTTGTGTCAAATGGACTCAGAAGCCAATTTaGATAGACTCTTACTGGCAAAGTGAGCCAACTCAA +
Preference number: 6 (lower is better)
Translates to: QRCCVKWTQKPI*IDSYWQSEPTQ
Trigger: TTGAGTTGGCTCACTTTGCCAGTAAGAGTCTATTCAAATTGGCTTCTGAGTCCATTTGACACAACACCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649446.1
CDS TCA 72 bp AAACTGAGCTGTGTCGTTCAGCGTGCACACGGGATTTaGAGAATTCTCATAAACTACAAGATCCTTTATATC +
Preference number: 6 (lower is better)
Translates to: KLSCVVQRAHGI*RILINYKILYI
Trigger: GATATAAAGGATCTTGTAGTTTATGAGAATTCTTCAAATCCCGTGTGCACGCTGAACGACACAGCTCAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CCA 72 bp TTCCCACTGTCAAAATACATGTTGGCTGTTACAGGCTaGTCTTTTGTGAGAATGAATCCTGATGAATCACAA +
Preference number: 6 (lower is better)
Translates to: FPLSKYMLAVTG*SFVRMNPDESQ
Trigger: TTGTGATTCATCAGGATTCATTCTCACAAAAGACCAGCCTGTAACAGCCAACATGTATTTTGACAGTGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 72 bp CCCATCTTGTATACTGAAAGAGTCTTGAGTATAATCTaGGTAGATGTCTCTTGGCATGCTGGCAAAATGTGT +
Preference number: 6 (lower is better)
Translates to: PILYTERVLSII*VDVSWHAGKMC
Trigger: ACACATTTTGCCAGCATGCCAAGAGACATCTACCAAGATTATACTCAAGACTCTTTCAGTATACAAGATGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000304449.8
ENST00000487600.1
ENST00000542113.3
ENST00000649446.1
CDS CAA 72 bp ACTCTTAAGACCATACTTCTGGGCAATCTGATGTATTaGCTTCCGTTCATCATTAGTCAGCTCTCTAGAGAA +
Preference number: 6 (lower is better)
Translates to: TLKTILLGNLMY*LPFIISQLSRE
Trigger: TTCTCTAGAGAGCTGACTAATGATGAACGGAAGCAAATACATCAGATTGCCCAGAAGTATGGTCTTAAGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp ATGAGACTTACTCTTAAGACCATACTTCTGGGCAATCTGATGTATTaGCTTCCGTTCATCATTAGTCAGCTCTCTAGAGAAAGTCAAATC +
Preference number: 6 (lower is better)
Translates to: MRLTLKTILLGNLMY*LPFIISQLSRESQI
Trigger: GATTTGACTTTCTCTAGAGAGCTGACTAATGATGAACGGAAGCAAATACATCAGATTGCCCAGAAGTATGGTCTTAAGAGTAAGTCTCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp CAACTGACAATACTGAGAATTCCCATCTTGTATACTGAAAGAGTCTaGAGTATAATCTTGGTAGATGTCTCTTGGCATGCTGGCAAAATG +
Preference number: 6 (lower is better)
Translates to: QLTILRIPILYTERV*SIILVDVSWHAGKM
Trigger: CATTTTGCCAGCATGCCAAGAGACATCTACCAAGATTATACTCAAGACTCTTTCAGTATACAAGATGGGAATTCTCAGTATTGTCAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000487600.1
CDS GCA 72 bp AGCAGTGATCTTGTAAAAACACTCGACAACGCCATGTaGGATTTGGCATCATCTCATATTTGTATTCAATTG +
Preference number: 6 (lower is better)
Translates to: SSDLVKTLDNAM*DLASSHICIQL
Trigger: CAATTGAATACAAATATGAGATGATGCCAAATCGCACATGGCGTTGTCGAGTGTTTTTACAAGATCACTGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp AAAAACACTCGACAACGCCATGTGCGATTTGGCATCATCTCATATTaGTATTCAATTGACATCTTGTTGAATGAGGCAGAATTGTTAAGG +
Preference number: 6 (lower is better)
Translates to: KNTRQRHVRFGIISY*YSIDILLNEAELLR
Trigger: CCTTAACAATTCTGCCTCATTCAACAAGATGTCAATTGAATACAAATATGAGATGATGCCAAATCGCACATGGCGTTGTCGAGTGTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS TCA 72 bp CCAACTGACAATACTGAGAATTCCCATCTTGTATACTaGAAGAGTCTTGAGTATAATCTTGGTAGATGTCTC +
Preference number: 6 (lower is better)
Translates to: PTDNTENSHLVY*KSLEYNLGRCL
Trigger: GAGACATCTACCAAGATTATACTCAAGACTCTTTCAGTATACAAGATGGGAATTCTCAGTATTGTCAGTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487600.1
CDS TCA 72 bp ATGACTTGTTTTGATTGTGGTCTCTATCATTTCTCATaGAATGGAATCAGGGTCCTTAGAGAAATGGCTGAT +
Preference number: 6 (lower is better)
Translates to: MTCFDCGLYHFS*NGIRVLREMAD
Trigger: ATCAGCCATTTCTCTAAGGACCCTGATTCCATTTCATGAGAAATGATAGAGACCACAATCAAAACAAGTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649446.1
CDS CAA 72 bp ATACTGAGAATTCCCATCTTGTATACTGAAAGAGTCTaGAGTATAATCTTGGTAGATGTCTCTTGGCATGCT +
Preference number: 6 (lower is better)
Translates to: ILRIPILYTERV*SIILVDVSWHA
Trigger: AGCATGCCAAGAGACATCTACCAAGATTATACTCAAGACTCTTTCAGTATACAAGATGGGAATTCTCAGTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000304449.8
ENST00000487600.1
ENST00000542113.3
ENST00000649446.1
CDS CAA 72 bp GATCTTGTAAAAACACTCGACAACGCCATGTGCGATTaGGCATCATCTCATATTTGTATTCAATTGACATCT +
Preference number: 6 (lower is better)
Translates to: DLVKTLDNAMCD*ASSHICIQLTS
Trigger: AGATGTCAATTGAATACAAATATGAGATGATGCCAAATCGCACATGGCGTTGTCGAGTGTTTTTACAAGATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS CAA 90 bp CGGCAGGAGGAATTTCCTTTAAAGGAGCATATATATACTCAGGATTaGTCTTACACGCCTGAATACAACGAGTTAACATATATGTATAAT +
Preference number: 6 (lower is better)
Translates to: RQEEFPLKEHIYTQD*SYTPEYNELTYMYN
Trigger: ATTATACATATATGTTAACTCGTTGTATTCAGGCGTGTAAGACAAATCCTGAGTATATATATGCTCCTTTAAAGGAAATTCCTCCTGCCG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1
CDS TCA 72 bp ATGAATCACAATACTGAGAATTCCCATCTTGTATACTaGAAGAGTCTTGAGTATAATCTTGGTAGATGTCTC +
Preference number: 6 (lower is better)
Translates to: MNHNTENSHLVY*KSLEYNLGRCL
Trigger: GAGACATCTACCAAGATTATACTCAAGACTCTTTCAGTATACAAGATGGGAATTCTCAGTATTGTGATTCAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304449.8
ENST00000542113.3
ENST00000649446.1