Pregenerated sensors for NHP2 (Homo sapiens)
Ensembl gene IDs: ENSG00000145912Ensembl transcript IDs: ENST00000502263.1, ENST00000510363.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CATATCTGTAGTCCCAAAACTAAGAAGATGTGGAGCTaGGAATCCATCCAGGCCTGTCTTAGCTCCAACACT | + |
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Preference number: 3 (lower is better) Translates to: HICSPKTKKMWS*ESIQACLSSNT Trigger: AGTGTTGGAGCTAAGACAGGCCTGGATGGATTCTCAGCTCCACATCTTCTTAGTTTTGGGACTACAGATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR CCA 90 bp | TCCATCCAGGCCTGTCTTAGCTCCAACACTCCTGGCTCTTTCCCACACTCTCCTCACACTCTCCTGCTATaGCAGACTATCCCAGACACC | + |
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Preference number: 4 (lower is better) Translates to: SIQACLSSNTPGSFPHSPHTLLL*QTIPDT Trigger: GGTGTCTGGGATAGTCTGCCATAGCAGGAGAGTGTG...AGGAGAGTGTGGGAAAGAGCCAGGAGTGTTGGAGCTAAGACAGGCCTGGATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR CCA 90 bp | GCAAGAAGTAACATATCTGTAGTCCCAAAACTAAGAAGATGTGGAGCTGAGAATGTGAGCCACAGCGCCTaGGCTGGGATTCCCACTTTA | + |
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Preference number: 4 (lower is better) Translates to: ARSNISVVPKLRRCGAENVSHSA*AGIPTL Trigger: TAAAGTGGGAATCCCAGCCCAGGCGCTGTGGCTCAC...ATTCTCAGCTCCACATCTTCTTAGTTTTGGGACTACAGATATGTTACTTCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR TCA 90 bp | AGTAACATATCTGTAGTCCCAAAACTAAGAAGATGTGGAGCTGAGAATCCATCCAAGAAGATGTGGAGCTaGGAATCCATCCAGGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: SNISVVPKLRRCGAENPSKKMWS*ESIQAC Trigger: ACAGGCCTGGATGGATTCTCAGCTCCACATCTTCTT...GGATGGATTCTCAGCTCCACATCTTCTTAGTTTTGGGACTACAGATATGTTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR GCA 90 bp | GCAAGAAGTAACATATCTGTAGTCCCAAAACTAAGAAGATGTGGAGCTGAGAATTTTCCCACACTCTCCTaGTATGGCAGACTATCCCAG | + |
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Preference number: 4 (lower is better) Translates to: ARSNISVVPKLRRCGAENFPTLS*YGRLSQ Trigger: CTGGGATAGTCTGCCATAGCAGGAGAGTGTGGGAAA...ATTCTCAGCTCCACATCTTCTTAGTTTTGGGACTACAGATATGTTACTTCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR CCA 90 bp | GCAAGAAGTAACATATCTGTAGTCCCAAAACTAAGAAGATGTGGAGCTGAGAATTCCCACTTTACAAGATaGGAACTGAAATGCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ARSNISVVPKLRRCGAENSHFTR*ELKCKK Trigger: CTTCTTGCATTTCAGTTCCCATCTTGTAAAGTGGGA...ATTCTCAGCTCCACATCTTCTTAGTTTTGGGACTACAGATATGTTACTTCTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR CAA 90 bp | TCCATCCAGGCCTGTCTTAGCTCCAACACTCCTGGCTCTTTCCCACACTCTCCTTGGAGTCTCACTTTGTaGCGCAGGTTATTCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: SIQACLSSNTPGSFPHSPWSLTL*RRLFLN Trigger: GTTCAGGAATAACCTGCGCAACAAAGTGAGACTCCA...AGGAGAGTGTGGGAAAGAGCCAGGAGTGTTGGAGCTAAGACAGGCCTGGATGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS-3UTR CAA 90 bp | GAGCCACAGCGCCTGGGCTGGGATTCCCACTTTACAAGATGGGAACTGAAATGCAGATGGAGTCTCACTTaGTTGCGCAGGTTATTCCTG | + |
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Preference number: 5 (lower is better) Translates to: EPQRLGWDSHFTRWELKCRWSLT*LRRLFL Trigger: CAGGAATAACCTGCGCAACAAAGTGAGACTCCATCT...GCATTTCAGTTCCCATCTTGTAAAGTGGGAATCCCAGCCCAGGCGCTGTGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502263.1 |
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| CDS CCA 90 bp | TACACAATTCGCTTCACTTTGGAATTCACTTTGAGCTGGTATACGTaGTGTACCGGTATTGTCGTACCGGTATTGTACCAAAGGGACTTT | + |
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Preference number: 5 (lower is better) Translates to: YTIRFTLEFTLSWYT*CTGIVVPVLYQRDF Trigger: AAAGTCCCTTTGGTACAATACCGGTACGACAATACCGGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCGAATTGTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CCA 90 bp | GACTTTGCTTACACAATTCGCTTCACTTTGGAATTCACTTTGAGCTaGTATACGTGGTGTACCGGTATTGTCGTACCGGTATTGTACCAA | + |
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Preference number: 5 (lower is better) Translates to: DFAYTIRFTLEFTLS*YTWCTGIVVPVLYQ Trigger: TTGGTACAATACCGGTACGACAATACCGGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCGAATTGTGTAAGCAAAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CAA 72 bp | TGGTATACGTGGTGTACCGGTATTGTCGTACCGGTATaGTACCAAAGGGACTTTACCGACTGCTTGATTGGC | + |
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Preference number: 6 (lower is better) Translates to: WYTWCTGIVVPV*YQRDFTDCLIG Trigger: GCCAATCAAGCAGTCGGTAAAGTCCCTTTGGTACAATACCGGTACGACAATACCGGTACACCACGTATACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CAA 90 bp | ACTTTGAGCTGGTATACGTGGTGTACCGGTATTGTCGTACCGGTATaGTACCAAAGGGACTTTACCGACTGCTTGATTGGCTTCTGTATA | + |
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Preference number: 6 (lower is better) Translates to: TLSWYTWCTGIVVPV*YQRDFTDCLIGFCI Trigger: TATACAGAAGCCAATCAAGCAGTCGGTAAAGTCCCTTTGGTACAATACCGGTACGACAATACCGGTACACCACGTATACCAGCTCAAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CCA 72 bp | CGCTTCACTTTGGAATTCACTTTGAGCTGGTATACGTaGTGTACCGGTATTGTCGTACCGGTATTGTACCAA | + |
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Preference number: 6 (lower is better) Translates to: RFTLEFTLSWYT*CTGIVVPVLYQ Trigger: TTGGTACAATACCGGTACGACAATACCGGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CAA 90 bp | CTAAGGGACTTTGCTTACACAATTCGCTTCACTTTGGAATTCACTTaGAGCTGGTATACGTGGTGTACCGGTATTGTCGTACCGGTATTG | + |
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Preference number: 6 (lower is better) Translates to: LRDFAYTIRFTLEFT*SWYTWCTGIVVPVL Trigger: CAATACCGGTACGACAATACCGGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCGAATTGTGTAAGCAAAGTCCCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CAA 90 bp | GGTGGGTTTACTCTAAGGGACTTTGCTTACACAATTCGCTTCACTTaGGAATTCACTTTGAGCTGGTATACGTGGTGTACCGGTATTGTC | + |
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Preference number: 6 (lower is better) Translates to: GGFTLRDFAYTIRFT*EFTLSWYTWCTGIV Trigger: GACAATACCGGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCGAATTGTGTAAGCAAAGTCCCTTAGAGTAAACCCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS TCA 72 bp | TTGCTTACACAATTCGCTTCACTTTGGAATTCACTTTaGGCTGGTATACGTGGTGTACCGGTATTGTCGTAC | + |
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Preference number: 6 (lower is better) Translates to: LLTQFASLWNSL*AGIRGVPVLSY Trigger: GTACGACAATACCGGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCGAATTGTGTAAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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| CDS CAA 72 bp | ACTCTAAGGGACTTTGCTTACACAATTCGCTTCACTTaGGAATTCACTTTGAGCTGGTATACGTGGTGTACC | + |
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Preference number: 6 (lower is better) Translates to: TLRDFAYTIRFT*EFTLSWYTWCT Trigger: GGTACACCACGTATACCAGCTCAAAGTGAATTCCAAAGTGAAGCGAATTGTGTAAGCAAAGTCCCTTAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510363.1 |
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