RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NEMP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000166881

Ensembl transcript IDs: ENST00000300128.9, ENST00000379391.7, ENST00000553654.1, ENST00000554340.1

Found 361 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCAAGGACACACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTaGGAGCAACTCTCAGGCTGCAGAACCAATTGCCATCTCCACTGC +
Preference number: 1 (lower is better)
Translates to: GKDTQHTRAAPSFTV*EQLSGCRTNCHLHC
Trigger: GCAGTGGAGATGGCAATTGGTTCTGCAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGTGTGTCCTTGCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR GCA 90 bp ACTGCCCACCTGGAGGGCAGTCTCAGAGCTGACCCTTTGGAAGTCTaGAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCTGG +
Preference number: 1 (lower is better)
Translates to: TAHLEGSLRADPLEV*NGARPFKITTLNGW
Trigger: CCAGCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACTGCCCTCCAGGTGGGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 90 bp CGTGGGATGGTGTGGAAATCCAAAGCCCCACATTTTGGGAGTCTGTaGCCACTCCCATCTGCCACTAAAGCTACGAGTTGGTGTTGGCAT +
Preference number: 1 (lower is better)
Translates to: RGMVWKSKAPHFGSL*PLPSATKATSWCWH
Trigger: ATGCCAACACCAACTCGTAGCTTTAGTGGCAGATGGGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTGGATTTCCACACCATCCCACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 90 bp TTTAAGGCTCTGGAAAACACTGGTGGAAATAATCAACTGCCCACCTaGAGGGCAGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAG +
Preference number: 1 (lower is better)
Translates to: FKALENTGGNNQLPT*RAVSELTLWKSAME
Trigger: CTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACTGCCCTCCAGGTGGGCAGTTGATTATTTCCACCAGTGTTTTCCAGAGCCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 90 bp TCCCTAATCCATACTCCTGCTCATGGACAGAAACTTCATTTGGCGTaGGGTGGGAAGAGCCTTCCACAAAGTCAGCAAATCTTTTTGGAG +
Preference number: 1 (lower is better)
Translates to: SLIHTPAHGQKLHLA*GGKSLPQSQQIFLE
Trigger: CTCCAAAAAGATTTGCTGACTTTGTGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGGATTAGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR GCA 90 bp TTCTACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTaGACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACG +
Preference number: 1 (lower is better)
Translates to: FYPIYLTLFQRVESN*TTHATWTKAPSQST
Trigger: CGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR CCA 90 bp ATTATCATCAAGAGTGTGAAAGAGGAAGATGACACACACGTGGGATaGTGTGGAAATCCAAAGCCCCACATTTTGGGAGTCTGTGACCAC +
Preference number: 1 (lower is better)
Translates to: IIIKSVKEEDDTHVG*CGNPKPHILGVCDH
Trigger: GTGGTCACAGACTCCCAAAATGTGGGGCTTTGGATTTCCACACCATCCCACGTGTGTGTCATCTTCCTCTTTCACACTCTTGATGATAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 90 bp AATCCATACTCCTGCTCATGGACAGAAACTTCATTTGGCGTGAGGTaGGAAGAGCCTTCCACAAAGTCAGCAAATCTTTTTGGAGACTGG +
Preference number: 1 (lower is better)
Translates to: NPYSCSWTETSFGVR*EEPSTKSANLFGDW
Trigger: CCAGTCTCCAAAAAGATTTGCTGACTTTGTGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR CCA 90 bp GTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCATAAAATaGAACAGTGGGACCCAAAGAGCTATCAGCAAAATTCCCTTTGTA +
Preference number: 1 (lower is better)
Translates to: VKRRLGPRMESISIK*NSGTQRAISKIPFV
Trigger: TACAAAGGGAATTTTGCTGATAGCTCTTTGGGTCCCACTGTTCCATTTTATGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 90 bp ACTGCTCATTTTTCACTTTCTACTATATGTCTCTTTCCTGCCAACTaGGGTAGTTGTCACTTAGGACAGTTTAAGGCTCTGGAAAACACT +
Preference number: 1 (lower is better)
Translates to: TAHFSLSTICLFPAN*GSCHLGQFKALENT
Trigger: AGTGTTTTCCAGAGCCTTAAACTGTCCTAAGTGACAACTACCTCAGTTGGCAGGAAAGAGACATATAGTAGAAAGTGAAAAATGAGCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 90 bp AGGCATGAAGATAACCTGGAGCCTATTTCCTGGCAATGCAAATTGTaGCTGCTGCATAACTACAAATTGTGTATCAAGAAACTACATAGT +
Preference number: 1 (lower is better)
Translates to: RHEDNLEPISWQCKL*LLHNYKLCIKKLHS
Trigger: ACTATGTAGTTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATCTTCATGCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR GCA 90 bp AAGATAACCTGGAGCCTATTTCCTGGCAATGCAAATTGTGGCTGCTaGATAACTACAAATTGTGTATCAAGAAACTACATAGTTTCAAGG +
Preference number: 1 (lower is better)
Translates to: KITWSLFPGNANCGC*ITTNCVSRNYIVSR
Trigger: CCTTGAAACTATGTAGTTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR GCA 90 bp ATGAAGATAACCTGGAGCCTATTTCCTGGCAATGCAAATTGTGGCTaGTGCATAACTACAAATTGTGTATCAAGAAACTACATAGTTTCA +
Preference number: 1 (lower is better)
Translates to: MKITWSLFPGNANCG*CITTNCVSRNYIVS
Trigger: TGAAACTATGTAGTTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATCTTCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp TCAGGAGACGAGGGGGAACAGGCTTTTCTGCTCCCTTACACACCTTTCTGCAGGCACAGGCCCATCAGCTaGAAGGTCCAGGTCAGCAGG +
Preference number: 2 (lower is better)
Translates to: SGDEGEQAFLLPYTPFCRHRPIS*KVQVSR
Trigger: CCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGTG...CCTGCAGAAAGGTGTGTAAGGGAGCAGAAAAGCCTGTTCCCCCTCGTCTCCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR GCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGAATTGCCATCTCCACTaGCTACAGCTCAGGTCTCCA +
Preference number: 2 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLNCHLH*LQLRSP
Trigger: TGGAGACCTGAGCTGTAGGCAGTGGAGATGGCAATT...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 90 bp TTTCCAATGCTGATGAGATCCAGAGCCCTGGAGCCCATTTATGGCTaGACATTCACCCAGCAAGACGCTGACGTGGCAGCAAACACGGCT +
Preference number: 2 (lower is better)
Translates to: FPMLMRSRALEPIYG*TFTQQDADVAANTA
Trigger: AGCCGTGTTTGCTGCCACGTCAGCGTCTTGCTGGGTGAATGTCAAGCCATAAATGGGCTCCAGGGCTCTGGATCTCATCAGCATTGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAGGACACCGAGAATATaGGTCCTCCTCCTCAGAGGA +
Preference number: 2 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPRTPRI*VLLLRG
Trigger: TCCTCTGAGGAGGAGGACTCATATTCTCGGTGTCCT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGCTCTGGAGCACTTGCTaGTTCTGGAACATGAGTTTG +
Preference number: 2 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLLWSTC*FWNMSL
Trigger: CAAACTCATGTTCCAGAACCAGCAAGTGCTCCAGAG...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGTCAGAGCTGACCCTTTaGAAGTCTGCAATGGAGCTA +
Preference number: 2 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLSELTL*KSAMEL
Trigger: TAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGA...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGAATCAACTGCCCACCTaGAGGGCAGTCTCAGAGCTG +
Preference number: 2 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRNQLPT*RAVSEL
Trigger: CAGCTCTGAGACTGCCCTCCAGGTGGGCAGTTGATT...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCGGCTGCAGAACCAATTaGCATCTCCACTGCCTACAG +
Preference number: 2 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVIGCRTN*HLHCLQ
Trigger: CTGTAGGCAGTGGAGATGGCAATTGGTTCTGCAGCC...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 90 bp GATGACACACACGTGGGATGGTGTGGAAATCCAAAGCCCCACATTTaGGGAGTCTGTGACCACTCCCATCTGCCACTAAAGCTACGAGTT +
Preference number: 2 (lower is better)
Translates to: DDTHVGWCGNPKPHI*GVCDHSHLPLKLRV
Trigger: AACTCGTAGCTTTAGTGGCAGATGGGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTGGATTTCCACACCATCCCACGTGTGTGTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGGATAACATGACCCAATaGCAGGAAAATGGAGAACGT +
Preference number: 2 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLDNMTQ*QENGER
Trigger: ACGTTCTCCATTTTCCTGTCATTGGGTCATGTTATC...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 90 bp CCATCTGCCACTAAAGCTACGAGTTGGTGTTGGCATGAATCTGCTTaGTTTATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCA +
Preference number: 2 (lower is better)
Translates to: PSATKATSWCWHESA*FIPSRLWLVSHKAP
Trigger: TGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAATAAACAAAGCAGATTCATGCCAACACCAACTCGTAGCTTTAGTGGCAGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGGAACACAGAGGATCTaGAGCATCTGGGCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILGTQRI*SIWAEP
Trigger: TGGCTCTGCCCAGATGCTTCAGATCCTCTGTGTTCC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCTGGAGCCTATTTCCTaGCAATGCAAATTGTGGCTG +
Preference number: 2 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVILEPIS*QCKLWL
Trigger: CAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAG...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTGGCAAGGGCAATATGTaGTATCTGGATGCCAGAATA +
Preference number: 2 (lower is better)
Translates to: LSFLRDPIETSHFQREAFGKGNM*YLDARI
Trigger: TATTCTGGCATCCAGATACCACATATTGCCCTTGCC...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTTTAACCAATGGGAAGTaGACTACCCAGCATTCACTA +
Preference number: 2 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPLTNGK*TTQHSL
Trigger: TAGTGAATGCTGGGTAGTTCACTTCCCATTGGTTAA...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR TCA 90 bp TTGGAGACTGGATTCGAGAAACAGTCTTCCAAGCAGAGCAGTCTGGACTGTTACGGATGCCAGAATACATaGAACACAGGCCCATCAGCT +
Preference number: 2 (lower is better)
Translates to: LETGFEKQSSKQSSLDCYGCQNT*NTGPSA
Trigger: AGCTGATGGGCCTGTGTTTCATGTATTCTGGCATCC...GTAACAGTCCAGACTGCTCTGCTTGGAAGACTGTTTCTCGAATCCAGTCTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR TCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTCCACGTAAAGATAACTaGCCACTACCTAGGTTAGAA +
Preference number: 2 (lower is better)
Translates to: LSFLRDPIETSHFQREAFPRKDN*PLPRLE
Trigger: TTCTAACCTAGGTAGTGGTCAGTTATCTTTACGTGG...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAACAACACATGCAACATaGACCAAGGCACCAAGCCAG +
Preference number: 2 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPTTHAT*TKAPSQ
Trigger: CTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR CCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTGGGGGTGTGTCACTCTaGAGCACTTGCTGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFGGVSL*STCWFW
Trigger: CCAGAACCAGCAAGTGCTCCAGAGTGACACACCCCC...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTTCTGTTTCAAAGGGTTaGAAGCAATTGCACAACACA +
Preference number: 2 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPSVSKG*KQLHNT
Trigger: TGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGA...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR TCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTGCTGTGCGCTTGCCATaGCCATCTATCTTCCTGGCT +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFAVRLP*PSIFLA
Trigger: AGCCAGGAAGATAGATGGTCATGGCAAGCGCACAGC...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACTCCAGGTCAGCAGGTTaGTACTTCGTTCATTCTCCA +
Preference number: 2 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDSRSAG*YFVHSP
Trigger: TGGAGAATGAACGAAGTATCAACCTGCTGACCTGGA...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR TCA 90 bp AGCAGTCTGGACTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTGTGATGTACAGCCACTaGATAGGGTGTTCCAGGTTC +
Preference number: 2 (lower is better)
Translates to: SSLDCYKILGAPLKPFGFVMYSH*IGCSRF
Trigger: GAACCTGGAACACCCTATTCAGTGGCTGTACATCAC...AAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAGTCCAGACTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR GCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACAATTGCACAACACATaGAACATGGACCAAGGCACC +
Preference number: 2 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPQLHNT*NMDQGT
Trigger: GGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTG...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR GCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAAGAAGGAGCTAGAATaGCATGCTAGCTGTGGCCAT +
Preference number: 2 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPKKELE*HASCGH
Trigger: ATGGCCACAGCTAGCATGGCATTCTAGCTCCTTCTT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGACCCTTTGGAAGTCTaGAATGGAGCTAGGCCTTTC +
Preference number: 2 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILDPLEV*NGARPF
Trigger: GAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGTGGAAATAATCAACTaGCCACCTGGAGGGCAGTCT +
Preference number: 2 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILVEIIN*PPGGQS
Trigger: AGACTGCCCTCCAGGTGGGCAGTTGATTATTTCCAC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGAACAAAAGGTTTAGGTaGCTTTGCCTTGTGCAATGG +
Preference number: 2 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRNKRFR*LCLVQW
Trigger: CCATTGCACAAGGCAAAGGCACCTAAACCTTTTGTT...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp CAGGAGACGAGGGGGAACAGGCTTTTCTGCTCCCTTACACACCTTTCTGCAGGTAGAAAATTTGACTTCTaGTCAGCAAGTCTCCACAAA +
Preference number: 2 (lower is better)
Translates to: QETRGNRLFCSLTHLSAGRKFDF*SASLHK
Trigger: TTTGTGGAGACTTGCTGAGCAGAAGTCAAATTTTCT...ACCTGCAGAAAGGTGTGTAAGGGAGCAGAAAAGCCTGTTCCCCCTCGTCTCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGTTGTGGATTTCTCTCTaGAAGTTGCAGCCTATAGTC +
Preference number: 2 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRLWISL*KLQPIV
Trigger: GACTATAGGCTGCAACTTCCAGAGAGAAATCCACAA...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTAGCAAGACGCTGACGTaGCAGCAAACACGGCTCCAA +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFSKTLT*QQTRLQ
Trigger: TTGGAGCCGTGTTTGCTGCCACGTCAGCGTCTTGCT...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGTCTGTTTCAAAGGGTTaGAAGCAATTGCACAACACA +
Preference number: 2 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRSVSKG*KQLHNT
Trigger: TGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGA...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCCAATTGCACAACACATaGAACATGGACCAAGGCACC +
Preference number: 2 (lower is better)
Translates to: PLEVCNGARPFKITTLNGQLHNT*NMDQGT
Trigger: GGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTG...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACCTCCTCCTCAGAGGATaGTTCCTCATAGATTTCATC +
Preference number: 2 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDLLLRG*FLIDFI
Trigger: GATGAAATCTATGAGGAAGCATCCTCTGAGGAGGAG...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCCTCTGGAGCACTTGCTaGTTCTGGAACATGAGTTTG +
Preference number: 2 (lower is better)
Translates to: PLEVCNGARPFKITTLNGLWSTC*FWNMSL
Trigger: CAAACTCATGTTCCAGAACCAGCAAGTGCTCCAGAG...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGGGGGTGTGTCACTCTaGAGCACTTGCTGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHGGVSL*STCWFW
Trigger: CCAGAACCAGCAAGTGCTCCAGAGTGACACACCCCC...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGCCAAGCAGAGCAGTCTaGACTGTTACAAAATTCTCG +
Preference number: 2 (lower is better)
Translates to: PIETSHFQREAFLGLLFQPSRAV*TVTKFS
Trigger: CGAGAATTTTGTAACAGTCCAGACTGCTCTGCTTGG...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR TCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTTCTGTTTCAAAGGGTTaGAAGCAATTGCACAACACA +
Preference number: 2 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASSVSKG*KQLHNT
Trigger: TGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGA...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR TCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCAACTCAAAGATAACATaGCCCAATGACAGGAAAATG +
Preference number: 2 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVINSKIT*PNDRKM
Trigger: CATTTTCCTGTCATTGGGTCATGTTATCTTTGAGTT...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCATGGCAATGCAAATTGTaGCTGCTGCATAACTACAAA +
Preference number: 2 (lower is better)
Translates to: REHHQSRDGWALEWNLLAWQCKL*LLHNYK
Trigger: TTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCA...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTCAGTCAAGAGACGGCTaGGCCCTAGAATGGAATCTA +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFQSRDG*ALEWNL
Trigger: TAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTG...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTTTAACCAATGGGAAGTaGACTACCCAGCATTCACTA +
Preference number: 2 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILLTNGK*TTQHSL
Trigger: TAGTGAATGCTGGGTAGTTCACTTCCCATTGGTTAA...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACAGCACTTGCTGGTTCTaGAACATGAGTTTGTTATGT +
Preference number: 2 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDSTCWF*NMSLLC
Trigger: ACATAACAAACTCATGTTCCAGAACCAGCAAGTGCT...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGCACTTGCTGGTTCTaGAACATGAGTTTGTTATGT +
Preference number: 2 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQASTCWF*NMSLLC
Trigger: ACATAACAAACTCATGTTCCAGAACCAGCAAGTGCT...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGCAGAGAAAAATTAAATaGGGTCTTCAAGTAGTGACT +
Preference number: 2 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRQRKIK*GLQVVT
Trigger: AGTCACTACTTGAAGACCCCATTTAATTTTTCTCTG...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGCAATATGTGGTATCTaGATGCCAGAATACATGAAA +
Preference number: 2 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASAICGI*MPEYMK
Trigger: TTTCATGTATTCTGGCATCCAGATACCACATATTGC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAGTCAGCAAATCTTTTTaGAGACTGGATTCGAGAAAC +
Preference number: 2 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPVSKSF*RLDSRN
Trigger: GTTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGAC...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR TCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGGTGACAGAAATGCCATaGTTGAATCAACTTTCAAGA +
Preference number: 2 (lower is better)
Translates to: PIETSHFQREAFLGLLFQVTEMP*LNQLSR
Trigger: TCTTGAAAGTTGATTCAATCATGGCATTTCTGTCAC...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGGGAATAATGCTACTCTaGACATACATAGTTCACAGG +
Preference number: 2 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKGIMLL*TYIVHR
Trigger: CCTGTGAACTATGTATGTTCAGAGTAGCATTATTCC...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAAAGAAGGAGCTAGAATaGCATGCTAGCTGTGGCCAT +
Preference number: 2 (lower is better)
Translates to: PIYLTLFQRVESNCTTHAKKELE*HASCGH
Trigger: ATGGCCACAGCTAGCATGGCATTCTAGCTCCTTCTT...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATACAACACATGCAACATaGACCAAGGCACCAAGCCAG +
Preference number: 2 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHTTHAT*TKAPSQ
Trigger: CTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGT...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR CCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTGGAGGCTCAGATTTGTaGATTTCTCTCTGGAAGTTG +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFGGSDL*ISLWKL
Trigger: CAACTTCCAGAGAGAAATCCACAAATCTGAGCCTCC...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTAAAATTACCCAGATTTaGGGGAGTATGGGTGGTGAG +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFKITQI*GSMGGE
Trigger: CTCACCACCCATACTCCCCCAAATCTGGGTAATTTT...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAATCTTTTTGGAGACTaGATTCGAGAAACAGTCTTC +
Preference number: 2 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPNLFGD*IRETVF
Trigger: GAAGACTGTTTCTCGAATCCAGTCTCCAAAAAGATT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCCATACTCCTGCTCATaGACAGAAACTTCATTTGGC +
Preference number: 2 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYPYSCS*TETSFG
Trigger: GCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGG...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR CAA 90 bp AGTAGGAGAATTTCTACCCTATCTATCTCACTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAA +
Preference number: 2 (lower is better)
Translates to: SRRISTLSISLCFKG*KAIAQHMQHGPRHQ
Trigger: TTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTAGAAATTCTCCTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR TCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTGTGACAGAAATGCCATaGTTGAATCAACTTTCAAGA +
Preference number: 2 (lower is better)
Translates to: SLRADPLEVCNGARPFKIVTEMP*LNQLSR
Trigger: TCTTGAAAGTTGATTCAATCATGGCATTTCTGTCAC...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 90 bp CAGAGGCATGAAGATAACCTGGAGCCTATTTCCTGGCAATGCAAATaGTGGCTGCTGCATAACTACAAATTGTGTATCAAGAAACTACAT +
Preference number: 2 (lower is better)
Translates to: QRHEDNLEPISWQCK*WLLHNYKLCIKKLH
Trigger: ATGTAGTTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATCTTCATGCCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTGAGATGAGACTGTACTaGAATCACAAGAGCTATAAC +
Preference number: 2 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFEMRLY*NHKSYN
Trigger: GTTATAGCTCTTGTGATTTCAGTACAGTCTCATCTC...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR TCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAAGCCCATTTATGGCTTaGCATTCACCCAGCAAGACG +
Preference number: 2 (lower is better)
Translates to: INGSLYINALHNLVRLMRSPFMA*HSPSKT
Trigger: CGTCTTGCTGGGTGAATGTCAAGCCATAAATGGGCT...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGACCAGTACATCTCACCTaGAGAAGAGCCTACAGGCAT +
Preference number: 2 (lower is better)
Translates to: INGSLYINALHNLVRLMRPVHLT*RRAYRH
Trigger: ATGCCTGTAGGCTCTTCTGCAGGTGAGATGTACTGG...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTAATGCAAATTGTGGCTaGTGCATAACTACAAATTGT +
Preference number: 2 (lower is better)
Translates to: SLRADPLEVCNGARPFKINANCG*CITTNC
Trigger: ACAATTTGTAGTTATGCAGCAGCCACAATTTGCATT...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACTTGTGGATTTCTCTCTaGAAGTTGCAGCCTATAGTC +
Preference number: 2 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHLWISL*KLQPIV
Trigger: GACTATAGGCTGCAACTTCCAGAGAGAAATCCACAA...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAGGCATGAAGATAACCTaGAGCCTATTTCCTGGCAAT +
Preference number: 2 (lower is better)
Translates to: INGSLYINALHNLVRLMRGMKIT*SLFPGN
Trigger: ATTGCCAGGAAATAGGCTCCAGGTTATCTTCATGCC...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 90 bp TGTATTCCCATTAATGGGAGTCTCTACATTAATGCTCTACATAATTaGGTCAGACTGATGAGAGGCAATAGATTTCCAATGCTGATGAGA +
Preference number: 2 (lower is better)
Translates to: CIPINGSLYINALHN*VRLMRGNRFPMLMR
Trigger: TCTCATCAGCATTGGAAATCTATTGCCTCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAATGGGAATACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR GCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGACACAAGAGCTATAACTaGCAGAGAAAAATTAAATGG +
Preference number: 2 (lower is better)
Translates to: INGSLYINALHNLVRLMRHKSYN*QRKIKW
Trigger: CCATTTAATTTTTCTCTGGCAGTTATAGCTCTTGTG...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CAA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGCTCAGAGCTGACCCTTaGGAAGTCTGCAATGGAGCT +
Preference number: 3 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLLRADP*EVCNGA
Trigger: AGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAG...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 72 bp GCCCATTTATGGCTTGACATTCACCCAGCAAGACGCTaGCGTGGCAGCAAACACGGCTCCAATGTCCAGCTT +
Preference number: 3 (lower is better)
Translates to: AHLWLDIHPARR*RGSKHGSNVQL
Trigger: AAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGTCTTGCTGGGTGAATGTCAAGCCATAAATGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CAA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGGAAGGAGGCTCAGATTaGTGGATTTCTCTCTGGAAG +
Preference number: 3 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLEGGSD*WISLWK
Trigger: CTTCCAGAGAGAAATCCACAAATCTGAGCCTCCTTC...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 72 bp ACAGGCCCATCAGCTGCAAGGTCCAGGTCAGCAGGTTaGTACTTCGTTCATTCTCCAAGGGCCCATACTTGT +
Preference number: 3 (lower is better)
Translates to: TGPSAARSRSAG*YFVHSPRAHTC
Trigger: ACAAGTATGGGCCCTTGGAGAATGAACGAAGTATCAACCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CAA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCGTCACTCTGGAGCACTaGCTGGTTCTGGAACATGAG +
Preference number: 3 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVIVTLEH*LVLEHE
Trigger: CTCATGTTCCAGAACCAGCAAGTGCTCCAGAGTGAC...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CAA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCTCAGAGCTGACCCTTaGGAAGTCTGCAATGGAGCT +
Preference number: 3 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVILRADP*EVCNGA
Trigger: AGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAG...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 72 bp GTGTGGAAATCCAAAGCCCCACATTTTGGGAGTCTGTaGCCACTCCCATCTGCCACTAAAGCTACGAGTTGG +
Preference number: 3 (lower is better)
Translates to: VWKSKAPHFGSL*PLPSATKATSW
Trigger: CCAACTCGTAGCTTTAGTGGCAGATGGGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTGGATTTCCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR GCA 72 bp CTGGAGGGCAGTCTCAGAGCTGACCCTTTGGAAGTCTaGAATGGAGCTAGGCCTTTCAAAATTACCACGCTA +
Preference number: 3 (lower is better)
Translates to: LEGSLRADPLEV*NGARPFKITTL
Trigger: TAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACTGCCCTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 72 bp CTGGAAAACACTGGTGGAAATAATCAACTGCCCACCTaGAGGGCAGTCTCAGAGCTGACCCTTTGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: LENTGGNNQLPT*RAVSELTLWKS
Trigger: AGACTTCCAAAGGGTCAGCTCTGAGACTGCCCTCCAGGTGGGCAGTTGATTATTTCCACCAGTGTTTTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 72 bp CAAGGGCAATATGTGGTATCTGGATGCCAGAATACATaGAACACAGGCCCATCAGCTGCAAGGTCCAGGTCA +
Preference number: 3 (lower is better)
Translates to: QGQYVVSGCQNT*NTGPSAARSRS
Trigger: TGACCTGGACCTTGCAGCTGATGGGCCTGTGTTTCATGTATTCTGGCATCCAGATACCACATATTGCCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR GCA 72 bp TGGATGCCAGAATACATGAAACACAGGCCCATCAGCTaGAAGGTCCAGGTCAGCAGGTTGATACTTCGTTCA +
Preference number: 3 (lower is better)
Translates to: WMPEYMKHRPIS*KVQVSRLILRS
Trigger: TGAACGAAGTATCAACCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGTGTTTCATGTATTCTGGCATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CAA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGTGTTCTGTTGGTCTCTaGAAGCAATCTGAGTGGGAA +
Preference number: 3 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRCSVGL*KQSEWE
Trigger: TTCCCACTCAGATTGCTTCAAGAGACCAACAGAACA...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR TCA 72 bp CATACTCCTGCTCATGGACAGAAACTTCATTTGGCGTaGGGTGGGAAGAGCCTTCCACAAAGTCAGCAAATC +
Preference number: 3 (lower is better)
Translates to: HTPAHGQKLHLA*GGKSLPQSQQI
Trigger: GATTTGCTGACTTTGTGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR GCA 72 bp TCATCCTGGGCAATAATGCTCCCTAATCCATACTCCTaGTCATGGACAGAAACTTCATTTGGCGTGAGGTGG +
Preference number: 3 (lower is better)
Translates to: SSWAIMLPNPYS*SWTETSFGVRW
Trigger: CCACCTCACGCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGGATTAGGGAGCATTATTGCCCAGGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CAA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGGAAGGAGGCTCAGATTaGTGGATTTCTCTCTGGAAG +
Preference number: 3 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKEGGSD*WISLWK
Trigger: CTTCCAGAGAGAAATCCACAAATCTGAGCCTCCTTC...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CAA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACCTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACAC +
Preference number: 3 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDLCFKG*KAIAQH
Trigger: GTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAG...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
3UTR-3UTR CAA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAGTCACTCTGGAGCACTaGCTGGTTCTGGAACATGAG +
Preference number: 3 (lower is better)
Translates to: PIYLTLFQRVESNCTTHAVTLEH*LVLEHE
Trigger: CTCATGTTCCAGAACCAGCAAGTGCTCCAGAGTGAC...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 72 bp ACCCAGAGGCATGAAGATAACCTGGAGCCTATTTCCTaGCAATGCAAATTGTGGCTGCTGCATAACTACAAA +
Preference number: 3 (lower is better)
Translates to: TQRHEDNLEPIS*QCKLWLLHNYK
Trigger: TTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATCTTCATGCCTCTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 72 bp TCCTGCTCATGGACAGAAACTTCATTTGGCGTGAGGTaGGAAGAGCCTTCCACAAAGTCAGCAAATCTTTTT +
Preference number: 3 (lower is better)
Translates to: SCSWTETSFGVR*EEPSTKSANLF
Trigger: AAAAAGATTTGCTGACTTTGTGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTTCTGTCCATGAGCAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CAA 90 bp GTTAGAAAGTTGTTCTGTGTGATAGCAGGACACCGAGAATATGAGTCCTCCTCCCTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACAC +
Preference number: 3 (lower is better)
Translates to: VRKLFCVIAGHREYESSSLCFKG*KAIAQH
Trigger: GTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAG...GGAGGAGGACTCATATTCTCGGTGTCCTGCTATCACACAGAACAACTTTCTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CAA 90 bp TACACAGCTAGGAACCATTTTTACGTAGGCATCCATCTGAGCCCATCTTGTTTTTCCTGGCAATGCAAATaGTGGCTGCTGCATAACTAC +
Preference number: 3 (lower is better)
Translates to: YTARNHFYVGIHLSPSCFSWQCK*WLLHNY
Trigger: GTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGA...AAAACAAGATGGGCTCAGATGGATGCCTACGTAAAAATGGTTCCTAGCTGTGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CAA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAGAGTAGTAGAAAATTaGACTTCTGCTCAGCAAGTC +
Preference number: 3 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPRVVEN*TSAQQV
Trigger: GACTTGCTGAGCAGAAGTCAAATTTTCTACTACTCT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR-3UTR CAA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGTCCAGGTCAGCAGGTaGATACTTCGTTCATTCTCC +
Preference number: 3 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHVQVSR*ILRSFS
Trigger: GGAGAATGAACGAAGTATCAACCTGCTGACCTGGAC...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR GCA 72 bp ACCTGGAGCCTATTTCCTGGCAATGCAAATTGTGGCTaGTGCATAACTACAAATTGTGTATCAAGAAACTAC +
Preference number: 3 (lower is better)
Translates to: TWSLFPGNANCG*CITTNCVSRNY
Trigger: GTAGTTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR-3UTR CAA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCACTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACAC +
Preference number: 3 (lower is better)
Translates to: KESETNATAITGSIHLRSLCFKG*KAIAQH
Trigger: GTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAG...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CCA 72 bp GATAACCTGGAGCCTATTTCCTGGCAATGCAAATTGTaGCTGCTGCATAACTACAAATTGTGTATCAAGAAA +
Preference number: 3 (lower is better)
Translates to: DNLEPISWQCKL*LLHNYKLCIKK
Trigger: TTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR GCA 72 bp TGGAGCCTATTTCCTGGCAATGCAAATTGTGGCTGCTaGATAACTACAAATTGTGTATCAAGAAACTACATA +
Preference number: 3 (lower is better)
Translates to: WSLFPGNANCGC*ITTNCVSRNYI
Trigger: TATGTAGTTTCTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGGGGCCCGGGACCAACTaGCGGCGAGACCGCCACTTT +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLGPGTN*RRDRHF
Trigger: AAAGTGGCGGTCTCGCCGGCAGTTGGTCCCGGGCCC...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGGGGCCCGGGACCAACTaGCGGCGAGACCGCCACTTT +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRGPGTN*RRDRHF
Trigger: AAAGTGGCGGTCTCGCCGGCAGTTGGTCCCGGGCCC...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGCATTCTCCACCTGGGTaGCTCGAACCAATCTGGAAC +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLHSPPG*LEPIWN
Trigger: GTTCCAGATTGGTTCGAGTCACCCAGGTGGAGAATG...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGCTGGTGCTGTGCGCTTaGCATGACCATCTATCTTCC +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLLVLCA*HDHLSS
Trigger: GGAAGATAGATGGTCATGGCAAGCGCACAGCACCAG...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTTCATTCCTCCCGCCATaGTTGCCTCAAGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPSFLPP*LPQATS
Trigger: GGAGGTGGCTTGAGGCAACCATGGCGGGAGGAATGA...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTGGAACACAGAGGATCTaGAGCATCTGGGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPGTQRI*SIWAEP
Trigger: TGGCTCTGCCCAGATGCTTCAGATCCTCTGTGTTCC...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGCACCCAGCAAGACGCTaGCGTGGCAGCAAACACGGC +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQHPARR*RGSKHG
Trigger: GCCGTGTTTGCTGCCACGTCAGCGTCTTGCTGGGTG...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 72 bp CACAGGCCCATCAGCTGCAAGGTCCAGGTCAGCAGGTaGATACTTCGTTCATTCTCCAAGGGCCCATACTTG +
Preference number: 4 (lower is better)
Translates to: HRPISCKVQVSR*ILRSFSKGPYL
Trigger: CAAGTATGGGCCCTTGGAGAATGAACGAAGTATCAACCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR TCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCGCTGTGCGCTTGCCATaGCCATCTATCTTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVIAVRLP*PSIFLA
Trigger: AGCCAGGAAGATAGATGGTCATGGCAAGCGCACAGC...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGGGCCCGGGACCAACTaGCGGCGAGACCGCCACTTT +
Preference number: 4 (lower is better)
Translates to: TLFQRVESNCTTHATWTKGPGTN*RRDRHF
Trigger: AAAGTGGCGGTCTCGCCGGCAGTTGGTCCCGGGCCC...CTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp TCAGGAGACGAGGGGGAACAGGCTTTTCTGCTCCCTTACACACCTTTCTGCAGGACAACACATGCAACATaGACCAAGGCACCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: SGDEGEQAFLLPYTPFCRTTHAT*TKAPSQ
Trigger: CTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGT...CCTGCAGAAAGGTGTGTAAGGGAGCAGAAAAGCCTGTTCCCCCTCGTCTCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000554340.1
3UTR CAA 72 bp CACGTGGGATGGTGTGGAAATCCAAAGCCCCACATTTaGGGAGTCTGTGACCACTCCCATCTGCCACTAAAG +
Preference number: 4 (lower is better)
Translates to: HVGWCGNPKPHI*GVCDHSHLPLK
Trigger: CTTTAGTGGCAGATGGGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTGGATTTCCACACCATCCCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGGAACACAGAGGATCTaGAGCATCTGGGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASGTQRI*SIWAEP
Trigger: TGGCTCTGCCCAGATGCTTCAGATCCTCTGTGTTCC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTAAAAGCATTCCTGCACTTAACAACAGTTCTTACTTTGGAGAGCCAGCCAGTGCACCCAGCAAGACGCTaGCGTGGCAGCAAACACGGC +
Preference number: 4 (lower is better)
Translates to: LKAFLHLTTVLTLESQPVHPARR*RGSKHG
Trigger: GCCGTGTTTGCTGCCACGTCAGCGTCTTGCTGGGTG...CACTGGCTGGCTCTCCAAAGTAAGAACTGTTGTTAAGTGCAGGAATGCTTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAGCCCATTTATGGCTTaGCATTCACCCAGCAAGACG +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPSPFMA*HSPSKT
Trigger: CGTCTTGCTGGGTGAATGTCAAGCCATAAATGGGCT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTTCCTCCCGCCATGGTTaGCTCAAGCCACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILSSRHG*LKPPPP
Trigger: AGGAGGAGGTGGCTTGAGGCAACCATGGCGGGAGGA...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR GCA 90 bp CTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTCTACCTCTCCTCACAGGCCCATCAGCTaGAAGGTCCAGGTCAGCAGG +
Preference number: 4 (lower is better)
Translates to: LLQNSRSSSKAFRVSTSPHRPIS*KVQVSR
Trigger: CCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGTG...AGGAGAGGTAGAAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR GCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGCTGGTGCTGTGCGCTTaGCATGACCATCTATCTTCC +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRLVLCA*HDHLSS
Trigger: GGAAGATAGATGGTCATGGCAAGCGCACAGCACCAG...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTGTGGAAATAATCAACTaGCCACCTGGAGGGCAGTCT +
Preference number: 4 (lower is better)
Translates to: LSFLRDPIETSHFQREAFVEIIN*PPGGQS
Trigger: AGACTGCCCTCCAGGTGGGCAGTTGATTATTTCCAC...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTGAGCAACTCTCAGGCTaGAGAACCAATTGCCATCTC +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPEQLSG*RTNCHL
Trigger: GAGATGGCAATTGGTTCTGCAGCCTGAGAGTTGCTC...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTTCATTTGGCGTGAGGTaGGAAGAGCCTTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPSFGVR*EEPSTK
Trigger: CTTTGTGGAAGGCTCTTCCCACCTCACGCCAAATGA...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGGGAGGCTCAGATTTGTaGATTTCTCTCTGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLGGSDL*ISLWKL
Trigger: CAACTTCCAGAGAGAAATCCACAAATCTGAGCCTCC...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAGCCAGCAAACTAAGTaGCCAAGAGGGAGACAAGAG +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPSQQTK*PRGRQE
Trigger: CTCTTGTCTCCCTCTTGGCCACTTAGTTTGCTGGCT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGCAAAGCCCCACATTTTaGGAGTCTGTGACCACTCCC +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRQSPTF*ESVTTP
Trigger: GGGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTG...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGCAAACTTGGGATTCCTaGAGCATGACCACATTTACA +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLQTWDS*SMTTFT
Trigger: TGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTG...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGAGCCTCCCACCAGGATaGCGTAAATGGGACTTTTCT +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRSLPPG*RKWDFS
Trigger: AGAAAAGTCCCATTTACGTCATCCTGGTGGGAGGCT...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGTTAACCAATGGGAAGTaGACTACCCAGCATTCACTA +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLLTNGK*TTQHSL
Trigger: TAGTGAATGCTGGGTAGTTCACTTCCCATTGGTTAA...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACGCTGTGCGCTTGCCATaGCCATCTATCTTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDAVRLP*PSIFLA
Trigger: AGCCAGGAAGATAGATGGTCATGGCAAGCGCACAGC...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTCCGTCCTTCACTGTGTaGGAGCAACTCTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILPSFTV*EQLSGC
Trigger: GCAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGG...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTGCTCCTAAAGAAGGTTaGAGTCAAGCAATCTCCGGA +
Preference number: 4 (lower is better)
Translates to: LSFLRDPIETSHFQREAFAPKEG*SQAISG
Trigger: TCCGGAGATTGCTTGACTTCAACCTTCTTTAGGAGC...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCATTTTGGGAGTCTGTaGCCACTCCCATCTGCCACT +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASHFGSL*PLPSAT
Trigger: AGTGGCAGATGGGAGTGGTCACAGACTCCCAAAATG...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGCATCAGTTTCAGCTGTaGCGTAGACCAAGCAGCCGG +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQHQFQL*RRPSSR
Trigger: CCGGCTGCTTGGTCTACGGCACAGCTGAAACTGATG...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR GCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGAACAAAAGGTTTAGGTaGCTTTGCCTTGTGCAATGG +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLNKRFR*LCLVQW
Trigger: CCATTGCACAAGGCAAAGGCACCTAAACCTTTTGTT...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGTCATTTGGCGTGAGGTaGGAAGAGCCTTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRSFGVR*EEPSTK
Trigger: CTTTGTGGAAGGCTCTTCCCACCTCACGCCAAATGA...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAGCAAGACGCTGACGTaGCAGCAAACACGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPSKTLT*QQTRLQ
Trigger: TTGGAGCCGTGTTTGCTGCCACGTCAGCGTCTTGCT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGACACGTGGGATGGTGTaGAAATCCAAAGCCCCACAT +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRTRGMV*KSKAPH
Trigger: ATGTGGGGCTTTGGATTTCCACACCATCCCACGTGT...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCATCTCCGGATCACAATaGCACTGTACTTGGTGTCCT +
Preference number: 4 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVIISGSQ*HCTWCP
Trigger: AGGACACCAAGTACAGTGTCATTGTGATCCGGAGAT...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR TCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGGTGGTGAGAAAAGGCTaGAAGGAATGGACAGAGCAT +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRVVRKG*KEWTEH
Trigger: ATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCAC...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTAAAAGCATTCCTGCACTTAACAACAGTTCTTACTTTGGAGAGCCAGCCAGTGCCGTCCTTCACTGTGTaGGAGCAACTCTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LKAFLHLTTVLTLESQPVPSFTV*EQLSGC
Trigger: GCAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGG...CACTGGCTGGCTCTCCAAAGTAAGAACTGTTGTTAAGTGCAGGAATGCTTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCACAGGCCCATCAGCTaGAAGGTCCAGGTCAGCAGG +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYHRPIS*KVQVSR
Trigger: CCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGTG...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR GCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGTGGAAATAATCAACTaGCCACCTGGAGGGCAGTCT +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASVEIIN*PPGGQS
Trigger: AGACTGCCCTCCAGGTGGGCAGTTGATTATTTCCAC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGGTAACCCATAGCATCTaGCCAAATACTGCTCATTTT +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLVTHSI*PNTAHF
Trigger: AAAATGAGCAGTATTTGGGCAGATGCTATGGGTTAC...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTAATTGCCATCTCCACTaGCTACAGCTCAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASNCHLH*LQLRSP
Trigger: TGGAGACCTGAGCTGTAGGCAGTGGAGATGGCAATT...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGCTCTGGAGCACTTGCTaGTTCTGGAACATGAGTTTG +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRLWSTC*FWNMSL
Trigger: CAAACTCATGTTCCAGAACCAGCAAGTGCTCCAGAG...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACGGGGGTGTGTCACTCTaGAGCACTTGCTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: CFKGLKAIAQHMQHGPRHGGVSL*STCWFW
Trigger: CCAGAACCAGCAAGTGCTCCAGAGTGACACACCCCC...GTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAAAATTACCCAGATTTaGGGGAGTATGGGTGGTGAG +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPKITQI*GSMGGE
Trigger: CTCACCACCCATACTCCCCCAAATCTGGGTAATTTT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTAATCAACTGCCCACCTaGAGGGCAGTCTCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILNQLPT*RAVSEL
Trigger: CAGCTCTGAGACTGCCCTCCAGGTGGGCAGTTGATT...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCATTCCCAGCAGGCTCTaGCTCGTGTCACATAAGGCA +
Preference number: 4 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQAIPSRL*LVSHKA
Trigger: TGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGCATTCTCCACCTGGGTaGCTCGAACCAATCTGGAAC +
Preference number: 4 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLHSPPG*LEPIWN
Trigger: GTTCCAGATTGGTTCGAGTCACCCAGGTGGAGAATG...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACGGATGCCAGAATACATaGAACACAGGCCCATCAGCT +
Preference number: 4 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDGCQNT*NTGPSA
Trigger: AGCTGATGGGCCTGTGTTTCATGTATTCTGGCATCC...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp TTGGAGACTGGATTCGAGAAACAGTCTTCCAAGCAGAGCAGTCTGGACTGTTACGTGATGTACAGCCACTaGATAGGGTGTTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LETGFEKQSSKQSSLDCYVMYSH*IGCSRF
Trigger: GAACCTGGAACACCCTATTCAGTGGCTGTACATCAC...GTAACAGTCCAGACTGCTCTGCTTGGAAGACTGTTTCTCGAATCCAGTCTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR TCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGAAACTTCATTTGGCGTaGGGTGGGAAGAGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQKLHLA*GGKSLP
Trigger: TGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTT...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp AGCAGTCTGGACTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTAGGACACCGAGAATATaGGTCCTCCTCCTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: SSLDCYKILGAPLKPFGFRTPRI*VLLLRG
Trigger: TCCTCTGAGGAGGAGGACTCATATTCTCGGTGTCCT...AAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAGTCCAGACTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCCACGTAAAGATAACTaGCCACTACCTAGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPPRKDN*PLPRLE
Trigger: TTCTAACCTAGGTAGTGGTCAGTTATCTTTACGTGG...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAACTTGACAGCTGAATaGGCACCCAGAGGCATGAAG +
Preference number: 4 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPNLTAE*APRGMK
Trigger: CTTCATGCCTCTGGGTGCTCATTCAGCTGTCAAGTT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTCATTTTGGGAGTCTGTaGCCACTCCCATCTGCCACT +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILHFGSL*PLPSAT
Trigger: AGTGGCAGATGGGAGTGGTCACAGACTCCCAAAATG...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGGCTGCAGAACCAATTaGCATCTCCACTGCCTACAG +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILGCRTN*HLHCLQ
Trigger: CTGTAGGCAGTGGAGATGGCAATTGGTTCTGCAGCC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTGTTTGGGATCAAATCTaGTCTAGCTCCTTCAGTTTC +
Preference number: 4 (lower is better)
Translates to: LSFLRDPIETSHFQREAFVWDQI*SSSFSF
Trigger: GAAACTGAAGGAGCTAGAGCAGATTTGATCCCAAAC...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCGGCAAGGGCAATATGTaGTATCTGGATGCCAGAATA +
Preference number: 4 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVIGKGNM*YLDARI
Trigger: TATTCTGGCATCCAGATACCACATATTGCCCTTGCC...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGGGGGTGTGTCACTCTaGAGCACTTGCTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: TLFQRVESNCTTHATWTKGGVSL*STCWFW
Trigger: CCAGAACCAGCAAGTGCTCCAGAGTGACACACCCCC...CTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGACCACGCTAAATGGCTaGTCTAAAGGAGTCATTACG +
Preference number: 4 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRTTLNG*SKGVIT
Trigger: CGTAATGACTCCTTTAGACCAGCCATTTAGCGTGGT...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGTCTATTAGCATAAAATaGAACAGTGGGACCCAAAGA +
Preference number: 4 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLSISIK*NSGTQR
Trigger: TCTTTGGGTCCCACTGTTCCATTTTATGCTAATAGA...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACCAGTCAAGAGACGGCTaGGCCCTAGAATGGAATCTA +
Preference number: 4 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDQSRDG*ALEWNL
Trigger: TAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTG...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGCAGTCAAGAGACGGCTaGGCCCTAGAATGGAATCTA +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQQSRDG*ALEWNL
Trigger: TAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTG...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTACTAAAGCTACGAGTTaGTGTTGGCATGAATCTGCT +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPTKATS*CWHESA
Trigger: AGCAGATTCATGCCAACACCAACTCGTAGCTTTAGT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCGACACACACGTGGGATaGTGTGGAAATCCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: PLEVCNGARPFKITTLNGDTHVG*CGNPKP
Trigger: GGGCTTTGGATTTCCACACCATCCCACGTGTGTGTC...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGACACACACGTGGGATaGTGTGGAAATCCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILDTHVG*CGNPKP
Trigger: GGGCTTTGGATTTCCACACCATCCCACGTGTGTGTC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTCTGTTTCAAAGGGTTaGAAGCAATTGCACAACACA +
Preference number: 4 (lower is better)
Translates to: LSFLRDPIETSHFQREAFSVSKG*KQLHNT
Trigger: TGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGA...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGTGGAAACTTGACAGCTaGATGAGCACCCAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKWKLDS*MSTQRH
Trigger: ATGCCTCTGGGTGCTCATTCAGCTGTCAAGTTTCCA...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCAAAGTTCATGGAAACTTaGCAGCTGAATGAGCACCCA +
Preference number: 4 (lower is better)
Translates to: REHHQSRDGWALEWNLLAKFMET*QLNEHP
Trigger: TGGGTGCTCATTCAGCTGTCAAGTTTCCATGAACTT...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCTTGCTTCCTCACAGATaGCATTGCTGGTTTATAAGG +
Preference number: 4 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVILLPHR*HCWFIR
Trigger: CCTTATAAACCAGCAATGTCATCTGTGAGGAAGCAA...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTGAGATGAGACTGTACTaGAATCACAAGAGCTATAAC +
Preference number: 4 (lower is better)
Translates to: LSFLRDPIETSHFQREAFEMRLY*NHKSYN
Trigger: GTTATAGCTCTTGTGATTTCAGTACAGTCTCATCTC...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTAGCCCATTTATGGCTTaGCATTCACCCAGCAAGACG +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILSPFMA*HSPSKT
Trigger: CGTCTTGCTGGGTGAATGTCAAGCCATAAATGGGCT...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTCATATGTCAGACTTaGGTCCAGAGAATACTAGAA +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPLICQT*VQRILE
Trigger: TTCTAGTATTCTCTGGACTCAAGTCTGACATATGAG...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACCAATTGCACAACACATaGAACATGGACCAAGGCACC +
Preference number: 4 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDQLHNT*NMDQGT
Trigger: GGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTG...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR GCA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAAGAAGGAGCTAGAATaGCATGCTAGCTGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQAKKELE*HASCGH
Trigger: ATGGCCACAGCTAGCATGGCATTCTAGCTCCTTCTT...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTCCAGTACATCTCACCTaGAGAAGAGCCTACAGGCAT +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILPVHLT*RRAYRH
Trigger: ATGCCTGTAGGCTCTTCTGCAGGTGAGATGTACTGG...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTGACCCTTTGGAAGTCTaGAATGGAGCTAGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKIDPLEV*NGARPF
Trigger: GAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTC...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTAATTGCCATCTCCACTaGCTACAGCTCAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKINCHLH*LQLRSP
Trigger: TGGAGACCTGAGCTGTAGGCAGTGGAGATGGCAATT...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTGAGCAACTCTCAGGCTaGAGAACCAATTGCCATCTC +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKIEQLSG*RTNCHL
Trigger: GAGATGGCAATTGGTTCTGCAGCCTGAGAGTTGCTC...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAGCAGAGCAGTCTaGACTGTTACAAAATTCTCG +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASPSRAV*TVTKFS
Trigger: CGAGAATTTTGTAACAGTCCAGACTGCTCTGCTTGG...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAGCACTTGCTGGTTCTaGAACATGAGTTTGTTATGT +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPSTCWF*NMSLLC
Trigger: ACATAACAAACTCATGTTCCAGAACCAGCAAGTGCT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGAATCAACTGCCCACCTaGAGGGCAGTCTCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: TLFQRVESNCTTHATWTKNQLPT*RAVSEL
Trigger: CAGCTCTGAGACTGCCCTCCAGGTGGGCAGTTGATT...CTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGAGCCAGCAAACTAAGTaGCCAAGAGGGAGACAAGAG +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKSQQTK*PRGRQE
Trigger: CTCTTGTCTCCCTCTTGGCCACTTAGTTTGCTGGCT...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCAATGGATATCAGGGCCTaGGGGGACTATCTGGCCTAT +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKAMDIRA*GDYLAY
Trigger: ATAGGCCAGATAGTCCCCCCAGGCCCTGATATCCAT...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTTCCAGGTCAGCAGGTTaGTACTTCGTTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILSRSAG*YFVHSP
Trigger: TGGAGAATGAACGAAGTATCAACCTGCTGACCTGGA...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTAAAAGCATTCCTGCACTTAACAACAGTTCTTACTTTGGAGAGCCAGCCAGTGGGATGCCAGAATACATaGAACACAGGCCCATCAGCT +
Preference number: 4 (lower is better)
Translates to: LKAFLHLTTVLTLESQPVGCQNT*NTGPSA
Trigger: AGCTGATGGGCCTGTGTTTCATGTATTCTGGCATCC...CACTGGCTGGCTCTCCAAAGTAAGAACTGTTGTTAAGTGCAGGAATGCTTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCAAAACTTCATTTGGCGTaGGGTGGGAAGAGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKAKLHLA*GGKSLP
Trigger: TGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTT...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGATAACATGACCCAATaGCAGGAAAATGGAGAACGT +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASDNMTQ*QENGER
Trigger: ACGTTCTCCATTTTCCTGTCATTGGGTCATGTTATC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGGTGGTGAGAAAAGGCTaGAAGGAATGGACAGAGCAT +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKVVRKG*KEWTEH
Trigger: ATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCAC...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTTCTTCAAGTAGTGACTaGGCCAGCAAACTAAGTGGC +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILSSSSD*ASKLSG
Trigger: GCCACTTAGTTTGCTGGCTCAGTCACTACTTGAAGA...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGTCTTCAAGTAGTGACTaGGCCAGCAAACTAAGTGGC +
Preference number: 4 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLSSSSD*ASKLSG
Trigger: GCCACTTAGTTTGCTGGCTCAGTCACTACTTGAAGA...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGCTCCTCCTCAGAGGATaGTTCCTCATAGATTTCATC +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQLLLRG*FLIDFI
Trigger: GATGAAATCTATGAGGAAGCATCCTCTGAGGAGGAG...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR GCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGCAATTGCACAACACATaGAACATGGACCAAGGCACC +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKQLHNT*NMDQGT
Trigger: GGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTG...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp TGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACGACCCTTTGGAAGTCTaGAATGGAGCTAGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: CFKGLKAIAQHMQHGPRHDPLEV*NGARPF
Trigger: GAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTC...GTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAAACAAGAAAGAGTTTaGGATCAAATCTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPKQERV*DQISGS
Trigger: TGATCCGGAGATTTGATCCCAAACTCTTTCTTGTTT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR CCA 90 bp TTGGAGACTGGATTCGAGAAACAGTCTTCCAAGCAGAGCAGTCTGGACTGTTACGGCAAGGGCAATATGTaGTATCTGGATGCCAGAATA +
Preference number: 4 (lower is better)
Translates to: LETGFEKQSSKQSSLDCYGKGNM*YLDARI
Trigger: TATTCTGGCATCCAGATACCACATATTGCCCTTGCC...GTAACAGTCCAGACTGCTCTGCTTGGAAGACTGTTTCTCGAATCCAGTCTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACCATACTCCTGCTCATaGACAGAAACTTCATTTGGC +
Preference number: 4 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPPYSCS*TETSFG
Trigger: GCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGG...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGAAAATTACCCAGATTTaGGGGAGTATGGGTGGTGAG +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQKITQI*GSMGGE
Trigger: CTCACCACCCATACTCCCCCAAATCTGGGTAATTTT...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCCTGGAGCCTATTTCCTaGCAATGCAAATTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: PLEVCNGARPFKITTLNGLEPIS*QCKLWL
Trigger: CAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAG...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTTCAGAGCTGACCCTTTaGAAGTCTGCAATGGAGCTA +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKISELTL*KSAMEL
Trigger: TAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGA...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATATTCCCAGCAGGCTCTaGCTCGTGTCACATAAGGCA +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYIPSRL*LVSHKA
Trigger: TGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGCAAAGCCCCACATTTTaGGAGTCTGTGACCACTCCC +
Preference number: 4 (lower is better)
Translates to: TLFQRVESNCTTHATWTKQSPTF*ESVTTP
Trigger: GGGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTG...CTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGAAGATGACACACACGTaGGATGGTGTGGAAATCCAA +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQKMTHT*DGVEIQ
Trigger: TTGGATTTCCACACCATCCCACGTGTGTGTCATCTT...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AGTATAAAAATGATGATTAGCAGAGAGGCCACAATTCCCACAGTCATCCCAGTACATTCTCCACCTGGGTaGCTCGAACCAATCTGGAAC +
Preference number: 4 (lower is better)
Translates to: SIKMMISREATIPTVIPVHSPPG*LEPIWN
Trigger: GTTCCAGATTGGTTCGAGTCACCCAGGTGGAGAATG...TACTGGGATGACTGTGGGAATTGTGGCCTCTCTGCTAATCATCATTTTTATACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR TCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCATCCAGGTCAGCAGGTTaGTACTTCGTTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKASRSAG*YFVHSP
Trigger: TGGAGAATGAACGAAGTATCAACCTGCTGACCTGGA...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp TTGGAGACTGGATTCGAGAAACAGTCTTCCAAGCAGAGCAGTCTGGACTGTTACTTAACCAATGGGAAGTaGACTACCCAGCATTCACTA +
Preference number: 4 (lower is better)
Translates to: LETGFEKQSSKQSSLDCYLTNGK*TTQHSL
Trigger: TAGTGAATGCTGGGTAGTTCACTTCCCATTGGTTAA...GTAACAGTCCAGACTGCTCTGCTTGGAAGACTGTTTCTCGAATCCAGTCTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR TCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGGAATAATGCTACTCTaGACATACATAGTTCACAGG +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASGIMLL*TYIVHR
Trigger: CCTGTGAACTATGTATGTTCAGAGTAGCATTATTCC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATTGGAAACTTGACAGCTaGATGAGCACCCAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYWKLDS*MSTQRH
Trigger: ATGCCTCTGGGTGCTCATTCAGCTGTCAAGTTTCCA...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTAAAAGCATTCCTGCACTTAACAACAGTTCTTACTTTGGAGAGCCAGCCAGTGGCTCCTAAAGAAGGTTaGAGTCAAGCAATCTCCGGA +
Preference number: 4 (lower is better)
Translates to: LKAFLHLTTVLTLESQPVAPKEG*SQAISG
Trigger: TCCGGAGATTGCTTGACTTCAACCTTCTTTAGGAGC...CACTGGCTGGCTCTCCAAAGTAAGAACTGTTGTTAAGTGCAGGAATGCTTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTCTCTTGAAGCAATCTaGGTGGGAAAGGAAAGTGAA +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQSLEAI*VGKESE
Trigger: TTCACTTTCCTTTCCCACTCAGATTGCTTCAAGAGA...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGTTCTGTTGGTCTCTTaGAGCAATCTGAGTGGGAAA +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILVLLVS*SNLSGK
Trigger: TTTCCCACTCAGATTGCTTCAAGAGACCAACAGAAC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGCTCCTCCTCAGAGGATaGTTCCTCATAGATTTCATC +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKLLLRG*FLIDFI
Trigger: GATGAAATCTATGAGGAAGCATCCTCTGAGGAGGAG...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAATGCAAATTGTGGCTaGTGCATAACTACAAATTGT +
Preference number: 4 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPNANCG*CITTNC
Trigger: ACAATTTGTAGTTATGCAGCAGCCACAATTTGCATT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACGGCTGCAGAACCAATTaGCATCTCCACTGCCTACAG +
Preference number: 4 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHGCRTN*HLHCLQ
Trigger: CTGTAGGCAGTGGAGATGGCAATTGGTTCTGCAGCC...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTGTTGTCATAAGAATGTaGTCATGCTATAGGCAAATT +
Preference number: 4 (lower is better)
Translates to: LSFLRDPIETSHFQREAFVVIRM*SCYRQI
Trigger: AATTTGCCTATAGCATGAGCACATTCTTATGACAAC...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTCTACCTCTCCTCCAAGCAGAGCAGTCTaGACTGTTACAAAATTCTCG +
Preference number: 4 (lower is better)
Translates to: LLQNSRSSSKAFRVSTSPPSRAV*TVTKFS
Trigger: CGAGAATTTTGTAACAGTCCAGACTGCTCTGCTTGG...AGGAGAGGTAGAAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGTCAGCAAATCTTTTTaGAGACTGGATTCGAGAAAC +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASVSKSF*RLDSRN
Trigger: GTTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGAC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTCCATACTCCTGCTCATaGACAGAAACTTCATTTGGC +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILPYSCS*TETSFG
Trigger: GCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGG...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACTTGTGGATTTCTCTCTaGAAGTTGCAGCCTATAGTC +
Preference number: 4 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDLWISL*KLQPIV
Trigger: GACTATAGGCTGCAACTTCCAGAGAGAAATCCACAA...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGGGAGGCTCAGATTTGTaGATTTCTCTCTGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKGGSDL*ISLWKL
Trigger: CAACTTCCAGAGAGAAATCCACAAATCTGAGCCTCC...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCAAGCACTTGCTGGTTCTaGAACATGAGTTTGTTATGT +
Preference number: 4 (lower is better)
Translates to: REHHQSRDGWALEWNLLASTCWF*NMSLLC
Trigger: ACATAACAAACTCATGTTCCAGAACCAGCAAGTGCT...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGGGCATGAAGATAACCTaGAGCCTATTTCCTGGCAAT +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKGMKIT*SLFPGN
Trigger: ATTGCCAGGAAATAGGCTCCAGGTTATCTTCATGCC...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACAAACTTCATTTGGCGTaGGGTGGGAAGAGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHKLHLA*GGKSLP
Trigger: TGGAAGGCTCTTCCCACCTCACGCCAAATGAAGTTT...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATAGGACACCGAGAATATaGGTCCTCCTCCTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHRTPRI*VLLLRG
Trigger: TCCTCTGAGGAGGAGGACTCATATTCTCGGTGTCCT...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGCCACGTAAAGATAACTaGCCACTACCTAGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLPRKDN*PLPRLE
Trigger: TTCTAACCTAGGTAGTGGTCAGTTATCTTTACGTGG...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTCTGTTTCAAAGGGTTaGAAGCAATTGCACAACACA +
Preference number: 4 (lower is better)
Translates to: PIETSHFQREAFLGLLFQSVSKG*KQLHNT
Trigger: TGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGA...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGTTAACCAATGGGAAGTaGACTACCCAGCATTCACTA +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKLTNGK*TTQHSL
Trigger: TAGTGAATGCTGGGTAGTTCACTTCCCATTGGTTAA...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCGATAACATGACCCAATaGCAGGAAAATGGAGAACGT +
Preference number: 4 (lower is better)
Translates to: PLEVCNGARPFKITTLNGDNMTQ*QENGER
Trigger: ACGTTCTCCATTTTCCTGTCATTGGGTCATGTTATC...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTAAAAGCATTCCTGCACTTAACAACAGTTCTTACTTTGGAGAGCCAGCCAGTGGTTCTGTTGGTCTCTTaGAGCAATCTGAGTGGGAAA +
Preference number: 4 (lower is better)
Translates to: LKAFLHLTTVLTLESQPVVLLVS*SNLSGK
Trigger: TTTCCCACTCAGATTGCTTCAAGAGACCAACAGAAC...CACTGGCTGGCTCTCCAAAGTAAGAACTGTTGTTAAGTGCAGGAATGCTTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATAAGAAGGAGCTAGAATaGCATGCTAGCTGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYKKELE*HASCGH
Trigger: ATGGCCACAGCTAGCATGGCATTCTAGCTCCTTCTT...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTATAAGAATGTGCTCATaGTATAGGCAAATTCAGAGG +
Preference number: 4 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASIRMCS*YRQIQR
Trigger: CCTCTGAATTTGCCTATAGCATGAGCACATTCTTAT...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAACAGAATTGTTGGCTaGCACGCTTTTCACAAACTT +
Preference number: 4 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPNRIVG*HAFHKL
Trigger: AAGTTTGTGAAAAGCGTGCCAGCCAACAATTCTGTT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCATCCTCATTCTCCACCTaGGTGACTCGAACCAATCTG +
Preference number: 4 (lower is better)
Translates to: PIYLTLFQRVESNCTTHASSFST*VTRTNL
Trigger: CAGATTGGTTCGAGTCACCCAGGTGGAGAATGAGGA...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCGTCAGCAAATCTTTTTaGAGACTGGATTCGAGAAAC +
Preference number: 4 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQAVSKSF*RLDSRN
Trigger: GTTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGAC...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCATACTCCTGCTCATaGACAGAAACTTCATTTGGC +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKAPYSCS*TETSFG
Trigger: GCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGG...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACAACACATGCAACATaGACCAAGGCACCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: PIYLTLFQRVESNCTTHATTHAT*TKAPSQ
Trigger: CTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGT...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp AACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACGTAAAGATAACTGACTGGCAATGCAAATTGTaGCTGCTGCATAACTACAAA +
Preference number: 4 (lower is better)
Translates to: NTCNMDQGTKPVHVKITDWQCKL*LLHNYK
Trigger: TTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCA...GTCAGTTATCTTTACGTGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCATCTATTAGCATAAAATaGAACAGTGGGACCCAAAGA +
Preference number: 4 (lower is better)
Translates to: REHHQSRDGWALEWNLLASISIK*NSGTQR
Trigger: TCTTTGGGTCCCACTGTTCCATTTTATGCTAATAGA...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCAATGGATATCAGGGCCTaGGGGGACTATCTGGCCTAT +
Preference number: 4 (lower is better)
Translates to: KESETNATAITGSIHLRSMDIRA*GDYLAY
Trigger: ATAGGCCAGATAGTCCCCCCAGGCCCTGATATCCAT...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACAAACTTGGGATTCCTaGAGCATGACCACATTTACA +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKAQTWDS*SMTTFT
Trigger: TGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTG...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGTGATGTACAGCCACTaGATAGGGTGTTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHVMYSH*IGCSRF
Trigger: GAACCTGGAACACCCTATTCAGTGGCTGTACATCAC...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTTCTGTTTCAAAGGGTTaGAAGCAATTGCACAACACA +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKISVSKG*KQLHNT
Trigger: TGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGA...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCGTGACAGAAATGCCATaGTTGAATCAACTTTCAAGA +
Preference number: 4 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQAVTEMP*LNQLSR
Trigger: TCTTGAAAGTTGATTCAATCATGGCATTTCTGTCAC...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCGGAATAATGCTACTCTaGACATACATAGTTCACAGG +
Preference number: 4 (lower is better)
Translates to: PLEVCNGARPFKITTLNGGIMLL*TYIVHR
Trigger: CCTGTGAACTATGTATGTTCAGAGTAGCATTATTCC...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATAACTTGACAGCTGAATaGGCACCCAGAGGCATGAAG +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHNLTAE*APRGMK
Trigger: CTTCATGCCTCTGGGTGCTCATTCAGCTGTCAAGTT...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGAAGTTCATGGAAACTTaGCAGCTGAATGAGCACCCA +
Preference number: 4 (lower is better)
Translates to: TLFQRVESNCTTHATWTKKFMET*QLNEHP
Trigger: TGGGTGCTCATTCAGCTGTCAAGTTTCCATGAACTT...CTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CTAAAAGCATTCCTGCACTTAACAACAGTTCTTACTTTGGAGAGCCAGCCAGTGTTGCTTCCTCACAGATaGCATTGCTGGTTTATAAGG +
Preference number: 4 (lower is better)
Translates to: LKAFLHLTTVLTLESQPVLLPHR*HCWFIR
Trigger: CCTTATAAACCAGCAATGTCATCTGTGAGGAAGCAA...CACTGGCTGGCTCTCCAAAGTAAGAACTGTTGTTAAGTGCAGGAATGCTTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGCTCATATGTCAGACTTaGGTCCAGAGAATACTAGAA +
Preference number: 4 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLLICQT*VQRILE
Trigger: TTCTAGTATTCTCTGGACTCAAGTCTGACATATGAG...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGAAAATTTGACTTCTaGTCAGCAAGTCTCCACAAA +
Preference number: 4 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQARKFDF*SASLHK
Trigger: TTTGTGGAGACTTGCTGAGCAGAAGTCAAATTTTCT...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000554340.1
CDS-3UTR GCA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCACCAGTACATCTCACCTaGAGAAGAGCCTACAGGCAT +
Preference number: 4 (lower is better)
Translates to: KESETNATAITGSIHLRSPVHLT*RRAYRH
Trigger: ATGCCTGTAGGCTCTTCTGCAGGTGAGATGTACTGG...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGGTAACCCATAGCATCTaGCCAAATACTGCTCATTTT +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKVTHSI*PNTAHF
Trigger: AAAATGAGCAGTATTTGGGCAGATGCTATGGGTTAC...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCACACAAGAGCTATAACTaGCAGAGAAAAATTAAATGG +
Preference number: 4 (lower is better)
Translates to: REHHQSRDGWALEWNLLAHKSYN*QRKIKW
Trigger: CCATTTAATTTTTCTCTGGCAGTTATAGCTCTTGTG...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTAACAGAATTGTTGGCTaGCACGCTTTTCACAAACTT +
Preference number: 4 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILNRIVG*HAFHKL
Trigger: AAGTTTGTGAAAAGCGTGCCAGCCAACAATTCTGTT...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTCTACCTCTCCTAACAGAATTGTTGGCTaGCACGCTTTTCACAAACTT +
Preference number: 4 (lower is better)
Translates to: LLQNSRSSSKAFRVSTSPNRIVG*HAFHKL
Trigger: AAGTTTGTGAAAAGCGTGCCAGCCAACAATTCTGTT...AGGAGAGGTAGAAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CCA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAGCAATATGTGGTATCTaGATGCCAGAATACATGAAA +
Preference number: 4 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPAICGI*MPEYMK
Trigger: TTTCATGTATTCTGGCATCCAGATACCACATATTGC...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp AGCAGTCTGGACTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTGTCAGCAAATCTTTTTaGAGACTGGATTCGAGAAAC +
Preference number: 4 (lower is better)
Translates to: SSLDCYKILGAPLKPFGFVSKSF*RLDSRN
Trigger: GTTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGAC...AAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAGTCCAGACTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGTTTGGTGGGATGCAGTaGCTAACAGGAATTACTTAT +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKFGGMQ*LTGITY
Trigger: ATAAGTAATTCCTGTTAGCCACTGCATCCCACCAAA...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCATAAAATGGAACAGTaGGACCCAAAGAGCTATCAG +
Preference number: 4 (lower is better)
Translates to: CFKGLKAIAQHMQHGPRHHKMEQ*DPKSYQ
Trigger: CTGATAGCTCTTTGGGTCCCACTGTTCCATTTTATG...GTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATACACGTGGGATGGTGTaGAAATCCAAAGCCCCACAT +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHTRGMV*KSKAPH
Trigger: ATGTGGGGCTTTGGATTTCCACACCATCCCACGTGT...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCAACTCAAAGATAACATaGCCCAATGACAGGAAAATG +
Preference number: 4 (lower is better)
Translates to: PLEVCNGARPFKITTLNGNSKIT*PNDRKM
Trigger: CATTTTCCTGTCATTGGGTCATGTTATCTTTGAGTT...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTAACTCAAAGATAACATaGCCCAATGACAGGAAAATG +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKINSKIT*PNDRKM
Trigger: CATTTTCCTGTCATTGGGTCATGTTATCTTTGAGTT...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATTCTCTTGAAGCAATCTaGGTGGGAAAGGAAAGTGAA +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYSLEAI*VGKESE
Trigger: TTCACTTTCCTTTCCCACTCAGATTGCTTCAAGAGA...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CTGTTACAAAATTCTCGGAGCTCCTCTAAAGCCTTTCGGGTTTCTACCTCTCCTGCAATATGTGGTATCTaGATGCCAGAATACATGAAA +
Preference number: 4 (lower is better)
Translates to: LLQNSRSSSKAFRVSTSPAICGI*MPEYMK
Trigger: TTTCATGTATTCTGGCATCCAGATACCACATATTGC...AGGAGAGGTAGAAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGAATCTTTTTGGAGACTaGATTCGAGAAACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKNLFGD*IRETVF
Trigger: GAAGACTGTTTCTCGAATCCAGTCTCCAAAAAGATT...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTAATCTTTTTGGAGACTaGATTCGAGAAACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: SLRADPLEVCNGARPFKINLFGD*IRETVF
Trigger: GAAGACTGTTTCTCGAATCCAGTCTCCAAAAAGATT...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATCTCTGGAGCACTTGCTaGTTCTGGAACATGAGTTTG +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHLWSTC*FWNMSL
Trigger: CAAACTCATGTTCCAGAACCAGCAAGTGCTCCAGAG...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACACCACGCTAAATGGCTaGTCTAAAGGAGTCATTACG +
Preference number: 4 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHTTLNG*SKGVIT
Trigger: CGTAATGACTCCTTTAGACCAGCCATTTAGCGTGGT...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 72 bp GAAGATAACCTGGAGCCTATTTCCTGGCAATGCAAATaGTGGCTGCTGCATAACTACAAATTGTGTATCAAG +
Preference number: 4 (lower is better)
Translates to: EDNLEPISWQCK*WLLHNYKLCIK
Trigger: CTTGATACACAATTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAGGTTATCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAAGCCTCCCACCAGGATaGCGTAAATGGGACTTTTCT +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRSLPPG*RKWDFS
Trigger: AGAAAAGTCCCATTTACGTCATCCTGGTGGGAGGCT...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAGTGATGTACAGCCACTaGATAGGGTGTTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRVMYSH*IGCSRF
Trigger: GAACCTGGAACACCCTATTCAGTGGCTGTACATCAC...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAATCTCCAGAGAATCCTaGGACCACTTGCACGAGTTG +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRISRES*DHLHEL
Trigger: CAACTCGTGCAAGTGGTCTCAGGATTCTCTGGAGAT...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATGAGATGAGACTGTACTaGAATCACAAGAGCTATAAC +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYEMRLY*NHKSYN
Trigger: GTTATAGCTCTTGTGATTTCAGTACAGTCTCATCTC...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp TGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACAGAAAATTTGACTTCTaGTCAGCAAGTCTCCACAAA +
Preference number: 4 (lower is better)
Translates to: CFKGLKAIAQHMQHGPRHRKFDF*SASLHK
Trigger: TTTGTGGAGACTTGCTGAGCAGAAGTCAAATTTTCT...GTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000554340.1
CDS-3UTR GCA 90 bp TGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACAGACACTTGAGAATTTaGTTCCTCACAGATGACATT +
Preference number: 4 (lower is better)
Translates to: CFKGLKAIAQHMQHGPRHRHLRI*FLTDDI
Trigger: AATGTCATCTGTGAGGAAGCAAATTCTCAAGTGTCT...GTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCAGCAATATGTGGTATCTaGATGCCAGAATACATGAAA +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKAAICGI*MPEYMK
Trigger: TTTCATGTATTCTGGCATCCAGATACCACATATTGC...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCATTGTGGATTTCTCTCTaGAAGTTGCAGCCTATAGTC +
Preference number: 4 (lower is better)
Translates to: PIYLTLFQRVESNCTTHALWISL*KLQPIV
Trigger: GACTATAGGCTGCAACTTCCAGAGAGAAATCCACAA...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGCAGAGAAAAATTAAATaGGGTCTTCAAGTAGTGACT +
Preference number: 4 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKQRKIK*GLQVVT
Trigger: AGTCACTACTTGAAGACCCCATTTAATTTTTCTCTG...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCCAGAGAAAAATTAAATaGGGTCTTCAAGTAGTGACT +
Preference number: 4 (lower is better)
Translates to: PLEVCNGARPFKITTLNGQRKIK*GLQVVT
Trigger: AGTCACTACTTGAAGACCCCATTTAATTTTTCTCTG...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATAAGATGACACACACGTaGGATGGTGTGGAAATCCAA +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHKMTHT*DGVEIQ
Trigger: TTGGATTTCCACACCATCCCACGTGTGTGTCATCTT...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGATCCAGGTCAGCAGGTTaGTACTTCGTTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRSRSAG*YFVHSP
Trigger: TGGAGAATGAACGAAGTATCAACCTGCTGACCTGGA...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR TCA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATCCACGTAAAGATAACTaGCCACTACCTAGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHPRKDN*PLPRLE
Trigger: TTCTAACCTAGGTAGTGGTCAGTTATCTTTACGTGG...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR GCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGACAATTGCACAACACATaGAACATGGACCAAGGCACC +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRQLHNT*NMDQGT
Trigger: GGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTG...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCATCTGCCCAAATACTaGTCATTTTTCACTTTCTAC +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYHLPKY*SFFTFY
Trigger: GTAGAAAGTGAAAAATGAGCAGTATTTGGGCAGATG...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATATAAGAATGTGCTCATaGTATAGGCAAATTCAGAGG +
Preference number: 4 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYIRMCS*YRQIQR
Trigger: CCTCTGAATTTGCCTATAGCATGAGCACATTCTTAT...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCAGTTGTCATAAGAATGTaGTCATGCTATAGGCAAATT +
Preference number: 4 (lower is better)
Translates to: LFQRVESNCTTHATWTKAVVIRM*SCYRQI
Trigger: AATTTGCCTATAGCATGAGCACATTCTTATGACAAC...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGACTGGAGCCTATTTCCTaGCAATGCAAATTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRLEPIS*QCKLWL
Trigger: CAGCCACAATTTGCATTGCCAGGAAATAGGCTCCAG...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGATCAGAGCTGACCCTTTaGAAGTCTGCAATGGAGCTA +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRSELTL*KSAMEL
Trigger: TAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGA...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCACATAAAATGGAACAGTaGGACCCAAAGAGCTATCAG +
Preference number: 4 (lower is better)
Translates to: KESETNATAITGSIHLRSHKMEQ*DPKSYQ
Trigger: CTGATAGCTCTTTGGGTCCCACTGTTCCATTTTATG...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 72 bp ATTTCTACCCTATCTATCTCACTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACACATGCAACATGGACCA +
Preference number: 4 (lower is better)
Translates to: ISTLSISLCFKG*KAIAQHMQHGP
Trigger: TGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTAGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR TCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAGTGACAGAAATGCCATaGTTGAATCAACTTTCAAGA +
Preference number: 4 (lower is better)
Translates to: PIYLTLFQRVESNCTTHAVTEMP*LNQLSR
Trigger: TCTTGAAAGTTGATTCAATCATGGCATTTCTGTCAC...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCATTCCAGATACTAAACTaGTCTAGCTCCTTCAGTTTC +
Preference number: 4 (lower is better)
Translates to: KESETNATAITGSIHLRSFQILN*SSSFSF
Trigger: GAAACTGAAGGAGCTAGAGCAGTTTAGTATCTGGAA...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR GCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAAGACACTTGAGAATTTaGTTCCTCACAGATGACATT +
Preference number: 4 (lower is better)
Translates to: PIYLTLFQRVESNCTTHARHLRI*FLTDDI
Trigger: AATGTCATCTGTGAGGAAGCAAATTCTCAAGTGTCT...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACAATCTTTTTGGAGACTaGATTCGAGAAACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHNLFGD*IRETVF
Trigger: GAAGACTGTTTCTCGAATCCAGTCTCCAAAAAGATT...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CCA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCATGGCAATGCAAATTGTaGCTGCTGCATAACTACAAA +
Preference number: 4 (lower is better)
Translates to: KESETNATAITGSIHLRSWQCKL*LLHNYK
Trigger: TTTGTAGTTATGCAGCAGCCACAATTTGCATTGCCA...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCATTTGGTGGGATGCAGTaGCTAACAGGAATTACTTAT +
Preference number: 4 (lower is better)
Translates to: KESETNATAITGSIHLRSFGGMQ*LTGITY
Trigger: ATAAGTAATTCCTGTTAGCCACTGCATCCCACCAAA...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAAATGCAAATTGTGGCTaGTGCATAACTACAAATTGT +
Preference number: 4 (lower is better)
Translates to: PIYLTLFQRVESNCTTHANANCG*CITTNC
Trigger: ACAATTTGTAGTTATGCAGCAGCCACAATTTGCATT...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR GCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAAACAAAAGGTTTAGGTaGCTTTGCCTTGTGCAATGG +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRNKRFR*LCLVQW
Trigger: CCATTGCACAAGGCAAAGGCACCTAAACCTTTTGTT...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CCA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGAACTAAAGCTACGAGTTaGTGTTGGCATGAATCTGCT +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHNLVRLMRTKATS*CWHESA
Trigger: AGCAGATTCATGCCAACACCAACTCGTAGCTTTAGT...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
3UTR CAA 72 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTaGGTCAGACTGATGAGAGGCAATAGATTTCCAATG +
Preference number: 4 (lower is better)
Translates to: INGSLYINALHN*VRLMRGNRFPM
Trigger: CATTGGAAATCTATTGCCTCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTTTCCTCCCGCCATGGTaGCCTCAAGCCACCTCCTCC +
Preference number: 5 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASFLPPW*PQATSS
Trigger: GGAGGAGGTGGCTTGAGGCAACCATGGCGGGAGGAA...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR CAA 90 bp CCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTAGGCTGCAGAACCAATaGCCATCTCCACTGCCTACA +
Preference number: 5 (lower is better)
Translates to: PQGSHRDLPFPKGGLFRPRLQNQ*PSPLPT
Trigger: TGTAGGCAGTGGAGATGGCAATTGGTTCTGCAGCCT...AGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp ATTCCCAGCAGGCTCTGGCTCGTGTCACATAAGGCACCAACATCCTTTTCAAGGGTCCAGGTCAGCAGGTaGATACTTCGTTCATTCTCC +
Preference number: 5 (lower is better)
Translates to: IPSRLWLVSHKAPTSFSRVQVSR*ILRSFS
Trigger: GGAGAATGAACGAAGTATCAACCTGCTGACCTGGAC...CCTTGAAAAGGATGTTGGTGCCTTATGTGACACGAGCCAGAGCCTGCTGGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGCTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACAC +
Preference number: 5 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLLCFKG*KAIAQH
Trigger: GTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAG...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCACTCAGAGCTGACCCTTaGGAAGTCTGCAATGGAGCT +
Preference number: 5 (lower is better)
Translates to: REHHQSRDGWALEWNLLALRADP*EVCNGA
Trigger: AGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAG...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCACCAAAGCCCCACATTTaGGGAGTCTGTGACCACTCC +
Preference number: 5 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPPKPHI*GVCDHS
Trigger: GGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTGG...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTGTCCAGGTCAGCAGGTaGATACTTCGTTCATTCTCC +
Preference number: 5 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASVQVSR*ILRSFS
Trigger: GGAGAATGAACGAAGTATCAACCTGCTGACCTGGAC...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp TCAGGAGACGAGGGGGAACAGGCTTTTCTGCTCCCTTACACACCTTTCTGCAGGCTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACAC +
Preference number: 5 (lower is better)
Translates to: SGDEGEQAFLLPYTPFCRLCFKG*KAIAQH
Trigger: GTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAG...CCTGCAGAAAGGTGTGTAAGGGAGCAGAAAAGCCTGTTCCCCCTCGTCTCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000554340.1
CDS-3UTR CAA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAGTCACTCTGGAGCACTaGCTGGTTCTGGAACATGAG +
Preference number: 5 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPVTLEH*LVLEHE
Trigger: CTCATGTTCCAGAACCAGCAAGTGCTCCAGAGTGAC...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp TTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCCAAGGCTGCAGAACCAATaGCCATCTCCACTGCCTACA +
Preference number: 5 (lower is better)
Translates to: LKAIAQHMQHGPRHQASPRLQNQ*PSPLPT
Trigger: TGTAGGCAGTGGAGATGGCAATTGGTTCTGCAGCCT...TGGACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGGTCACTCTGGAGCACTaGCTGGTTCTGGAACATGAG +
Preference number: 5 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLVTLEH*LVLEHE
Trigger: CTCATGTTCCAGAACCAGCAAGTGCTCCAGAGTGAC...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp ACAGCACACCAGAGCAGCACCGTCCTTCACTGTGTGAGAGCAACTCTCAGGCTGTTTATAAGGGGTACTTaGCAATGGCAAAAGAATCTG +
Preference number: 5 (lower is better)
Translates to: TAHQSSTVLHCVRATLRLFIRGT*QWQKNL
Trigger: CAGATTCTTTTGCCATTGCAAAGTACCCCTTATAAA...CAGCCTGAGAGTTGCTCTCACACAGTGAAGGACGGTGCTGCTCTGGTGTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCCTCAGAGCTGACCCTTaGGAAGTCTGCAATGGAGCT +
Preference number: 5 (lower is better)
Translates to: PLEVCNGARPFKITTLNGLRADP*EVCNGA
Trigger: AGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAG...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAAGCCCCACATTTaGGGAGTCTGTGACCACTCC +
Preference number: 5 (lower is better)
Translates to: LFQRVESNCTTHATWTKAPKPHI*GVCDHS
Trigger: GGAGTGGTCACAGACTCCCAAAATGTGGGGCTTTGG...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS TCA 90 bp ATTGTTGGCTGGCACGCTTTTCACAAACTTGGGATTCCTGAAGCATaGCCACATTTACATCAGTTTCAGCTGTGCCGTAGACCAAGCAGC +
Preference number: 5 (lower is better)
Translates to: IVGWHAFHKLGIPEA*PHLHQFQLCRRPSS
Trigger: GCTGCTTGGTCTACGGCACAGCTGAAACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp CTCTCCTTCCTCAGGGATCCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTAGAGTAGTAGAAAATTaGACTTCTGCTCAGCAAGTC +
Preference number: 5 (lower is better)
Translates to: LSFLRDPIETSHFQREAFRVVEN*TSAQQV
Trigger: GACTTGCTGAGCAGAAGTCAAATTTTCTACTACTCT...AAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGGATCCCTGAGGAAGGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000554340.1
CDS-3UTR CAA 90 bp GGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTTGTTCTGTTGGTCTCTaGAAGCAATCTGAGTGGGAA +
Preference number: 5 (lower is better)
Translates to: GLKAIAQHMQHGPRHQASCSVGL*KQSEWE
Trigger: TTCCCACTCAGATTGCTTCAAGAGACCAACAGAACA...ACTGGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp ACGCTGACGTGGCAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCGACTATCTGGCCTATTaGGGTTCTTTCATTCACCAA +
Preference number: 5 (lower is better)
Translates to: TLTWQQTRLQCPAYLIVIDYLAY*GSFIHQ
Trigger: TTGGTGAATGAAAGAACCCAAATAGGCCAGATAGTC...GATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTGCCACGTCAGCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS TCA 90 bp ATTGTTGGCTGGCACGCTTTTCACAAACTTGGGATTCCTGAAGCATaGCCACATTTACATCAGTTTCAGCAGATGGGGCTAGGAGAAACC +
Preference number: 5 (lower is better)
Translates to: IVGWHAFHKLGIPEA*PHLHQFQQMGLGET
Trigger: GGTTTCTCCTAGCCCCATCTGCTGAAACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553654.1
CDS-3UTR CAA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCTGTGTAACAGAATTGTaGGCTGGCACGCTTTTCACA +
Preference number: 5 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQACVTEL*AGTLFT
Trigger: TGTGAAAAGCGTGCCAGCCAACAATTCTGTTACACA...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTGAAGGAGGCTCAGATTaGTGGATTTCTCTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILEGGSD*WISLWK
Trigger: CTTCCAGAGAGAAATCCACAAATCTGAGCCTCCTTC...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGTCCTGGCAATGCAAATaGTGGCTGCTGCATAACTAC +
Preference number: 5 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLSWQCK*WLLHNY
Trigger: GTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGA...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCTCCTGGCAATGCAAATaGTGGCTGCTGCATAACTAC +
Preference number: 5 (lower is better)
Translates to: PLEVCNGARPFKITTLNGSWQCK*WLLHNY
Trigger: GTAGTTATGCAGCAGCCACAATTTGCATTGCCAGGA...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCCATAGAGACCTCCCATTTCCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGATTTGTGTAACAGAATaGTTGGCTGGCACGCTTTTC +
Preference number: 5 (lower is better)
Translates to: PIETSHFQREAFLGLLFQICVTE*LAGTLF
Trigger: GAAAAGCGTGCCAGCCAACAATTCTGTTACACAAAT...CTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGGAAATGGGAGGTCTCTATGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp AGGGAACACCATCAGTCAAGAGACGGCTGGGCCCTAGAATGGAATCTATTAGCAAGAGTAGTAGAAAATTaGACTTCTGCTCAGCAAGTC +
Preference number: 5 (lower is better)
Translates to: REHHQSRDGWALEWNLLARVVEN*TSAQQV
Trigger: GACTTGCTGAGCAGAAGTCAAATTTTCTACTACTCT...TGCTAATAGATTCCATTCTAGGGCCCAGCCGTCTCTTGACTGATGGTGTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR CAA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCAGAAGGAGGCTCAGATTaGTGGATTTCTCTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: LFQRVESNCTTHATWTKAEGGSD*WISLWK
Trigger: CTTCCAGAGAGAAATCCACAAATCTGAGCCTCCTTC...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATGAGCCCATTTATGGCTaGACATTCACCCAGCAAGAC +
Preference number: 5 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYEPIYG*TFTQQD
Trigger: GTCTTGCTGGGTGAATGTCAAGCCATAAATGGGCTC...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCATGTGTAACAGAATTGTaGGCTGGCACGCTTTTCACA +
Preference number: 5 (lower is better)
Translates to: LFQRVESNCTTHATWTKACVTEL*AGTLFT
Trigger: TGTGAAAAGCGTGCCAGCCAACAATTCTGTTACACA...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACGTCCAGGTCAGCAGGTaGATACTTCGTTCATTCTCC +
Preference number: 5 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHVQVSR*ILRSFS
Trigger: GGAGAATGAACGAAGTATCAACCTGCTGACCTGGAC...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp AAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCACCAAGCCAGTCAGCAAATCTTTTaGGAGACTGGATTCGAGAAA +
Preference number: 5 (lower is better)
Translates to: KGLKAIAQHMQHGPRHQASQQIF*ETGFEK
Trigger: TTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGACT...GGCTTGGTGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACGAGCCCATTTATGGCTaGACATTCACCCAGCAAGAC +
Preference number: 5 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHEPIYG*TFTQQD
Trigger: GTCTTGCTGGGTGAATGTCAAGCCATAAATGGGCTC...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTAATGCTCTACATAATTaGGTCAGACTGATGAGAGGC +
Preference number: 5 (lower is better)
Translates to: SLRADPLEVCNGARPFKINALHN*VRLMRG
Trigger: GCCTCTCATCAGTCTGACCAAATTATGTAGAGCATT...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCGACTATCTGGCCTATTaGGGTTCTTTCATTCACCAA +
Preference number: 5 (lower is better)
Translates to: PLEVCNGARPFKITTLNGDYLAY*GSFIHQ
Trigger: TTGGTGAATGAAAGAACCCAAATAGGCCAGATAGTC...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCAAAGGGAGGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATTGGCATGAATCTGCTTaGTTTATTCCCAGCAGGCTC +
Preference number: 5 (lower is better)
Translates to: PKGGLFRPLISVGEFLPYWHESA*FIPSRL
Trigger: GAGCCTGCTGGGAATAAACAAAGCAGATTCATGCCA...ATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCCTCCCTTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp ATGGGTGGTGAGAAAAGGCTGAAAGGAATGGACAGAGCATGTAGACAAAGGAAGAAAACAAGAAAGAGTTaGGGATCAAATCTCCGGATC +
Preference number: 5 (lower is better)
Translates to: MGGEKRLKGMDRACRQRKKTRKS*GSNLRI
Trigger: GATCCGGAGATTTGATCCCAAACTCTTTCTTGTTTT...CTTCCTTTGTCTACATGCTCTGTCCATTCCTTTCAGCCTTTTCTCACCACCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR CAA 90 bp AATGCCATGCTAGCTGTGGCCATCCAATTTCTCTGGAAACATAAAAGTGGGCTGAGTCAGCAAATCTTTTaGGAGACTGGATTCGAGAAA +
Preference number: 5 (lower is better)
Translates to: NAMLAVAIQFLWKHKSGLSQQIF*ETGFEK
Trigger: TTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGACT...CAGCCCACTTTTATGTTTCCAGAGAAATTGGATGGCCACAGCTAGCATGGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCAACATGGACCAAGGCAAATGCTCTACATAATTaGGTCAGACTGATGAGAGGC +
Preference number: 5 (lower is better)
Translates to: LFQRVESNCTTHATWTKANALHN*VRLMRG
Trigger: GCCTCTCATCAGTCTGACCAAATTATGTAGAGCATT...TGCCTTGGTCCATGTTGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTACCACGCTAAATGGCTCTCATATGTCAGACTaGAGTCCAGAGAATACTAGA +
Preference number: 5 (lower is better)
Translates to: PLEVCNGARPFKITTLNGSHMSD*SPENTR
Trigger: TCTAGTATTCTCTGGACTCAAGTCTGACATATGAGA...GCCATTTAGCGTGGTAATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp AGTCTCAGAGCTGACCCTTTGGAAGTCTGCAATGGAGCTAGGCCTTTCAAAATTTTAGGTGCCTTTGCCTaGTGCAATGGATATTTCATA +
Preference number: 5 (lower is better)
Translates to: SLRADPLEVCNGARPFKILGAFA*CNGYFI
Trigger: TATGAAATATCCATTGCACAAGGCAAAGGCACCTAA...AATTTTGAAAGGCCTAGCTCCATTGCAGACTTCCAAAGGGTCAGCTCTGAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACTGGCATGAATCTGCTTaGTTTATTCCCAGCAGGCTC +
Preference number: 5 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHWHESA*FIPSRL
Trigger: GAGCCTGCTGGGAATAAACAAAGCAGATTCATGCCA...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp CCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATGCATGTGTAACAGAATTGTaGGCTGGCACGCTTTTCACA +
Preference number: 5 (lower is better)
Translates to: PIYLTLFQRVESNCTTHACVTEL*AGTLFT
Trigger: TGTGAAAAGCGTGCCAGCCAACAATTCTGTTACACA...TGCATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp CAGCAAACACGGCTCCAATGTCCAGCTTACCTCATAGTTATCCCTTCAATCCTTTTTATAAGGGGTACTTaGCAATGGCAAAAGAATCTG +
Preference number: 5 (lower is better)
Translates to: QQTRLQCPAYLIVIPSILFIRGT*QWQKNL
Trigger: CAGATTCTTTTGCCATTGCAAAGTACCCCTTATAAA...AAGGATTGAAGGGATAACTATGAGGTAAGCTGGACATTGGAGCCGTGTTTGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp GGCCTTTTTAGGCCTCTTATTTCAGTAGGAGAATTTCTACCCTATCTATCTCACAGTCAGCAAATCTTTTaGGAGACTGGATTCGAGAAA +
Preference number: 5 (lower is better)
Translates to: GLFRPLISVGEFLPYLSHSQQIF*ETGFEK
Trigger: TTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGACT...GTGAGATAGATAGGGTAGAAATTCTCCTACTGAAATAAGAGGCCTAAAAAGGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATCTCTGTTTCAAAGGGTaGAAAGCAATTGCACAACAC +
Preference number: 5 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHLCFKG*KAIAQH
Trigger: GTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAG...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS-3UTR CAA 90 bp AAAGAATCTGAAACTAATGCTACTGCAATAACAGGCAGCATACATCTCAGGTCATCTATAATCTCAACTTaGAGGCAGGTTTTTGTGCTG +
Preference number: 5 (lower is better)
Translates to: KESETNATAITGSIHLRSSIIST*RQVFVL
Trigger: CAGCACAAAAACCTGCCTCAAAGTTGAGATTATAGA...TGACCTGAGATGTATGCTGCCTGTTATTGCAGTAGCATTAGTTTCAGATTCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS-3UTR CAA 90 bp TACCCTATCTATCTCACTCTGTTTCAAAGGGTTGAAAGCAATTGCACAACACATTTAGGTGCCTTTGCCTaGTGCAATGGATATTTCATA +
Preference number: 5 (lower is better)
Translates to: YPIYLTLFQRVESNCTTHLGAFA*CNGYFI
Trigger: TATGAAATATCCATTGCACAAGGCAAAGGCACCTAA...ATGTGTTGTGCAATTGCTTTCAACCCTTTGAAACAGAGTGAGATAGATAGGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS-3UTR CAA 90 bp ATTAATGGGAGTCTCTACATTAATGCTCTACATAATTTGGTCAGACTGATGAGATCTCATATGTCAGACTaGAGTCCAGAGAATACTAGA +
Preference number: 5 (lower is better)
Translates to: INGSLYINALHNLVRLMRSHMSD*SPENTR
Trigger: TCTAGTATTCTCTGGACTCAAGTCTGACATATGAGA...TCTCATCAGTCTGACCAAATTATGTAGAGCATTAATGTAGAGACTCCCATTAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000379391.7
CDS CCA 72 bp CTGCCGGCGAGACCGCCACTTTCATTCCTCCCGCCATaGTTGCCTCAAGCCACCTCCTCCTCACGTGCCTTA +
Preference number: 6 (lower is better)
Translates to: LPARPPLSFLPP*LPQATSSSRAL
Trigger: TAAGGCACGTGAGGAGGAGGTGGCTTGAGGCAACCATGGCGGGAGGAATGAAAGTGGCGGTCTCGCCGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300128.9
CDS TCA 72 bp TGTTGGCTGGCACGCTTTTCACAAACTTGGGATTCCTaGAGCATGACCACATTTACATCAGTTTCAGCTGTG +
Preference number: 6 (lower is better)
Translates to: CWLARFSQTWDS*SMTTFTSVSAV
Trigger: CACAGCTGAAACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS TCA 72 bp TGTTGGCTGGCACGCTTTTCACAAACTTGGGATTCCTaGAGCATGACCACATTTACATCAGTTTCAGCAGAT +
Preference number: 6 (lower is better)
Translates to: CWLARFSQTWDS*SMTTFTSVSAD
Trigger: ATCTGCTGAAACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553654.1
CDS CAA 72 bp GTAACAGAATTGTTGGCTGGCACGCTTTTCACAAACTaGGGATTCCTGAAGCATGACCACATTTACATCAGT +
Preference number: 6 (lower is better)
Translates to: VTELLAGTLFTN*GFLKHDHIYIS
Trigger: ACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACAATTCTGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000553654.1
ENST00000554340.1
CDS CAA 90 bp CACATTTGTGTAACAGAATTGTTGGCTGGCACGCTTTTCACAAACTaGGGATTCCTGAAGCATGACCACATTTACATCAGTTTCAGCTGT +
Preference number: 6 (lower is better)
Translates to: HICVTELLAGTLFTN*GFLKHDHIYISFSC
Trigger: ACAGCTGAAACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACAATTCTGTTACACAAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300128.9
ENST00000379391.7
ENST00000554340.1
CDS CAA 90 bp CACATTTGTGTAACAGAATTGTTGGCTGGCACGCTTTTCACAAACTaGGGATTCCTGAAGCATGACCACATTTACATCAGTTTCAGCAGA +
Preference number: 6 (lower is better)
Translates to: HICVTELLAGTLFTN*GFLKHDHIYISFSR
Trigger: TCTGCTGAAACTGATGTAAATGTGGTCATGCTTCAGGAATCCCAAGTTTGTGAAAAGCGTGCCAGCCAACAATTCTGTTACACAAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553654.1
CDS CAA 72 bp ACACTGTACTTGGTGTCCTTCTCTATAATCTCAACTTaGAGGCAGGTTTTTGTGCTGTATAGACCCACGTTA +
Preference number: 6 (lower is better)
Translates to: TLYLVSFSIIST*RQVFVLYRPTL
Trigger: TAACGTGGGTCTATACAGCACAAAAACCTGCCTCAAAGTTGAGATTATAGAGAAGGACACCAAGTACAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300128.9
ENST00000553654.1
CDS CAA 90 bp AGAAAGAGTTTGGGATCAAATCTCCGGATCACAATGACACTGTACTaGGTGTCCTTCTCTATAATCTCAACTTTGAGGCAGGTTTTTGTG +
Preference number: 6 (lower is better)
Translates to: RKSLGSNLRITMTLY*VSFSIISTLRQVFV
Trigger: CACAAAAACCTGCCTCAAAGTTGAGATTATAGAGAAGGACACCAAGTACAGTGTCATTGTGATCCGGAGATTTGATCCCAAACTCTTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300128.9