Pregenerated sensors for NEK2 (Homo sapiens)
Ensembl gene IDs: ENSG00000117650Ensembl transcript IDs: ENST00000366998.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCAAAATTAGCCGGGCTTaGTGGCGGGTGTCTGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFKISRA*WRVSVV Trigger: GACTACAGACACCCGCCACCAAGCCCGGCTAATTTT...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR CCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCCTACCTAAGCCACTTTaGGAGCAACACTGGTGCACA | + |
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Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFLPKPL*EQHWCT Trigger: TGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAG...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR CCA 90 bp | AATTTGAGATTTGTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGCTGAGGCAGAAGAATaGCGTGAACCCGGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: NLRFVNEKGYLSHFGSNTAEAEE*REPGRQ Trigger: CTGCCTCCCGGGTTCACGCCATTCTTCTGCCTCAGC...AGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTACAAATCTCAAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR TCA 90 bp | AATTTGAGATTTGTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTAGGCAGAGCTTGCAGTaGGCCGAGATTGTGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: NLRFVNEKGYLSHFGSNTRQSLQ*AEIVPL Trigger: CAGTGGCACAATCTCGGCTCACTGCAAGCTCTGCCT...AGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTACAAATCTCAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR CCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCAAAATAAGTATCGGCTaGGCACGGTGTCTCATGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFKISIG*ARCLMP Trigger: AGGCATGAGACACCGTGCCCAGCCGATACTTATTTT...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR CCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCGTTGATTCTCATACCTaGATTACTTGCCAGAGACAG | + |
|
Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFVDSHT*ITCQRQ Trigger: CTGTCTCTGGCAAGTAATCCAGGTATGAGAATCAAC...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR CCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCCTTTGGGAGCAACACTaGTGCACATTTCTTCATTTG | + |
|
Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFLWEQH*CTFLHL Trigger: CAAATGAAGAAATGTGCACCAGTGTTGCTCCCAAAG...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR TCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCATTGCCTCAGGTCTATaGACCCAGGAAATAAATCAT | + |
|
Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFIASGL*TQEINH Trigger: ATGATTTATTTCCTGGGTTCATAGACCTGAGGCAAT...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR GCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCAATTCTATGACTCATTaGCTCAGGTCTATGAACCCA | + |
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Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFNSMTH*LRSMNP Trigger: TGGGTTCATAGACCTGAGGCAATGAGTCATAGAATT...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR TCA 90 bp | GTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTGGTGCACATTTCTTTGAGATTTGTAAATaGAAAGGGCTACCTAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VNEKGYLSHFGSNTGAHFFEICK*KGLPKP Trigger: TGGCTTAGGTAGCCCTTTTCATTTACAAATCTCAAA...GAAATGTGCACCAGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR TCA 90 bp | AATTTGAGATTTGTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTAAACATGAAATTCTATaGCTCATTGCCTCAGGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: NLRFVNEKGYLSHFGSNTKHEIL*LIASGL Trigger: TAGACCTGAGGCAATGAGTCATAGAATTTCATGTTT...AGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTACAAATCTCAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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| CDS-3UTR CAA 90 bp | AATTTGAGATTTGTAAATGAAAAGGGCTACCTAAGCCACTTTGGGAGCAACACTCTTCTGTTGACCAAGTaGATTCTCATACCTGGATTA | + |
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Preference number: 5 (lower is better) Translates to: NLRFVNEKGYLSHFGSNTLLLTK*ILIPGL Trigger: TAATCCAGGTATGAGAATCAACTTGGTCAACAGAAG...AGTGTTGCTCCCAAAGTGGCTTAGGTAGCCCTTTTCATTTACAAATCTCAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366998.4 |
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