Pregenerated sensors for NEFH (Homo sapiens)

Ensembl gene IDs: ENSG00000100285

Ensembl transcript IDs: ENST00000310624.7

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGCGCCGACGTCACGTCGCACTTCAGGGCGTCGCGCGTCTCGGCCTaGATCTGCGCCTGCGCGGCGCCGGAGCCCTGGATCTGGCCGAGC	+
Preference number: 5 (lower is better) Translates to: SADVTSHFRASRVSA*ICACAAPEPWIWPS Trigger: GCTCGGCCAGATCCAGGGCTCCGGCGCCGCGCAGGCGCAGATGCAGGCCGAGACGCGCGACGCCCTGAAGTGCGACGTGACGTCGGCGCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000310624.7
CDS CCA 90 bp	CCTCCTCTTCTTCACCCCCTTCTTCCTCCTTGCCCTCCTCCTCTTTaGCCTCTTTCTCCTCTTCTTCAGTCACTTCTTCAGTCACTTGGG	+
Preference number: 5 (lower is better) Translates to: PPLLHPLLPPCPPPL*PLSPLLQSLLQSLG Trigger: CCCAAGTGACTGAAGAAGTGACTGAAGAAGAGGAGAAAGAGGCCAAAGAGGAGGAGGGCAAGGAGGAAGAAGGGGGTGAAGAAGAGGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000310624.7
CDS GCA 72 bp	TTCAGGGCGTCGCGCGTCTCGGCCTGCATCTGCGCCTaGGCGGCGCCGGAGCCCTGGATCTGGCCGAGCAGC	+
Preference number: 6 (lower is better) Translates to: FRASRVSACICA*AAPEPWIWPSS Trigger: GCTGCTCGGCCAGATCCAGGGCTCCGGCGCCGCGCAGGCGCAGATGCAGGCCGAGACGCGCGACGCCCTGAA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000310624.7
CDS GCA 72 bp	GTCACGTCGCACTTCAGGGCGTCGCGCGTCTCGGCCTaGATCTGCGCCTGCGCGGCGCCGGAGCCCTGGATC	+
Preference number: 6 (lower is better) Translates to: VTSHFRASRVSA*ICACAAPEPWI Trigger: GATCCAGGGCTCCGGCGCCGCGCAGGCGCAGATGCAGGCCGAGACGCGCGACGCCCTGAAGTGCGACGTGAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000310624.7

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu