Pregenerated sensors for NEDD8 (Homo sapiens)
Ensembl gene IDs: ENSG00000129559Ensembl transcript IDs: ENST00000524927.1, ENST00000527046.5, ENST00000531430.5, ENST00000533242.1, ENST00000560427.1, ENST00000642906.1, ENST00000644053.1, ENST00000644446.1, ENST00000646348.1, ENST00000646768.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAAAATCTTATTCTGAGAAGGGGCTTAGAGGCTTCACCAGATTGCCAAAGAGTCCACATAAGATCGCCATaGTGTCATTCTCACTCCAAA | + |
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Preference number: 2 (lower is better) Translates to: KNLILRRGLEASPDCQRVHIRSP*CHSHSK Trigger: TTTGGAGTGAGAATGACAGCATGGCGATCTTATGTG...GACTCTTTGGCAATCTGGTGAAGCCTCTAAGCCCCTTCTCAGAATAAGATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS-3UTR GCA 90 bp | GAGGCACCCCTGATCCACCTCAGTACGTGCCCCCTCTCCTCTTCTCATCTTCACCGCTCCGGTCGCCGCTaGCGCCCTCCAGCACTCTTG | + |
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Preference number: 4 (lower is better) Translates to: EAPLIHLSTCPLSSSHLHRSGRR*RPPALL Trigger: CAAGAGTGCTGGAGGGCGGCAGCGGCGACCGGAGCG...GTGAAGATGAGAAGAGGAGAGGGGGCACGTACTGAGGTGGATCAGGGGTGCCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS-3UTR GCA 90 bp | AATCTTATTCTGAGAAGGGGCTTAGAGGCTTCACCAGATTGCCAAAGAGTCTTACGCTCCGGTCGCCGCTaGCGCCCTCCAGCACTCTTG | + |
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Preference number: 4 (lower is better) Translates to: NLILRRGLEASPDCQRVLRSGRR*RPPALL Trigger: CAAGAGTGCTGGAGGGCGGCAGCGGCGACCGGAGCG...TAAGACTCTTTGGCAATCTGGTGAAGCCTCTAAGCCCCTTCTCAGAATAAGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS-3UTR GCA 90 bp | GAGGCACCCCTGATCCACCTCAGTACGTGCCCCCTCTCCTCTTCTCATCTTCACCACATAAGATCGCCATaGTGTCATTCTCACTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: EAPLIHLSTCPLSSSHLHHIRSP*CHSHSK Trigger: TTTGGAGTGAGAATGACAGCATGGCGATCTTATGTG...GTGAAGATGAGAAGAGGAGAGGGGGCACGTACTGAGGTGGATCAGGGGTGCCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS-3UTR GCA 90 bp | AGGGGCTTAGAGGCTTCACCAGATTGCCAAAGAGTCTTAGGCACCAAAAACAAGCACATAAGATCGCCATaGTGTCATTCTCACTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: RGLEASPDCQRVLGTKNKHIRSP*CHSHSK Trigger: TTTGGAGTGAGAATGACAGCATGGCGATCTTATGTG...CTTGTTTTTGGTGCCTAAGACTCTTTGGCAATCTGGTGAAGCCTCTAAGCCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS TCA 90 bp | GAGGCGACCTACGTTAGGGACTGGGAGAAGCAGGTACCCTGGGAATaGAGAATGGAGAGCAGCGCTTACTCCAAGAATCTGAGAGACGGG | + |
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Preference number: 5 (lower is better) Translates to: EATYVRDWEKQVPWE*RMESSAYSKNLRDG Trigger: CCCGTCTCTCAGATTCTTGGAGTAAGCGCTGCTCTCCATTCTTCATTCCCAGGGTACCTGCTTCTCCCAGTCCCTAACGTAGGTCGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000527046.5 ENST00000646768.1 |
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| CDS-3UTR CAA 90 bp | AGGGGCTTAGAGGCTTCACCAGATTGCCAAAGAGTCTTAGGCACCAAAAACAAGTTGATTCGCTCCACCTaGTCTGTAGGTTCAATGTCA | + |
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Preference number: 5 (lower is better) Translates to: RGLEASPDCQRVLGTKNKLIRST*SVGSMS Trigger: TGACATTGAACCTACAGACAAGGTGGAGCGAATCAA...CTTGTTTTTGGTGCCTAAGACTCTTTGGCAATCTGGTGAAGCCTCTAAGCCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS GCA 90 bp | GGTGCTACAAGGGTACCGTCTAGTAAGGGTACAGAGCAACTGGAATaGTCATACACTGCAGGTGGGAATATAAAATGGTACAAACCCTTA | + |
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Preference number: 5 (lower is better) Translates to: GATRVPSSKGTEQLE*SYTAGGNIKWYKPL Trigger: TAAGGGTTTGTACCATTTTATATTCCCACCTGCAGTGTATGAGCATTCCAGTTGCTCTGTACCCTTACTAGACGGTACCCTTGTAGCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000533242.1 ENST00000646348.1 |
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| CDS-3UTR CAA 90 bp | AAGGGGCTTAGAGGCTTCACCAGATTGCCAAAGAGTCTTAGGCACCAAAAACAATTGATTCGCTCCACCTaGTCTGTAGGTTCAATGTCA | + |
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Preference number: 5 (lower is better) Translates to: KGLRGFTRLPKSLRHQKQLIRST*SVGSMS Trigger: TGACATTGAACCTACAGACAAGGTGGAGCGAATCAA...TTGTTTTTGGTGCCTAAGACTCTTTGGCAATCTGGTGAAGCCTCTAAGCCCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000524927.1 ENST00000644053.1 |
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| CDS TCA 90 bp | CTCAATCTCCTTTCCGGTCAGCGTCTGAAACAGGCAATGGTTTCATaGGTCCTTAAAGCCCAATGTACAATTTGTCTTCTAGGTAAAACA | + |
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Preference number: 5 (lower is better) Translates to: LNLLSGQRLKQAMVS*VLKAQCTICLLGKT Trigger: TGTTTTACCTAGAAGACAAATTGTACATTGGGCTTTAAGGACTCATGAAACCATTGCCTGTTTCAGACGCTGACCGGAAAGGAGATTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS TCA 90 bp | TTGATAGGGCAAGATTCTTTGAACCATCTGATCCTCTTAATTCCATaGGTCATCTTCCAACATCAGTCCCCCAAAATCAGTGAGAATATT | + |
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Preference number: 5 (lower is better) Translates to: LIGQDSLNHLILLIP*VIFQHQSPKISENI Trigger: AATATTCTCACTGATTTTGGGGGACTGATGTTGGAAGATGACTCATGGAATTAAGAGGATCAGATGGTTCAAAGAATCTTGCCCTATCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS TCA 72 bp | CTCCTTTCCGGTCAGCGTCTGCCTCAGCCAAGGAAGTaGGGCTGGTCCAGGATGCCAGGCTCAGAAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: LLSGQRLPQPRK*GWSRMPGSERQ Trigger: CTGCCTTTCTGAGCCTGGCATCCTGGACCAGCCTCACTTCCTTGGCTGAGGCAGACGCTGACCGGAAAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000527046.5 ENST00000531430.5 ENST00000644446.1 ENST00000646768.1 |
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| CDS TCA 72 bp | AGACGGGGGAGTCAAGCCGCTGCTAGGCCTTCTCTATaGCTGCGGGGGTTCGAATACAGTGAGACCCGACAA | + |
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Preference number: 6 (lower is better) Translates to: RRGSQAAARPSL*LRGFEYSETRQ Trigger: TTGTCGGGTCTCACTGTATTCGAACCCCCGCAGTCATAGAGAAGGCCTAGCAGCGGCTTGACTCCCCCGTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000527046.5 ENST00000646768.1 |
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| CDS TCA 72 bp | GCTGGTCCAGGATGCCAGGCTCAGAAAGGCAGGTACTaGCTGAACACACTCCCCGCTTTGGTTCCTGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: AGPGCQAQKGRY*LNTLPALVPVG Trigger: TCCTACAGGAACCAAAGCGGGGAGTGTGTTCAGTCAGTACCTGCCTTTCTGAGCCTGGCATCCTGGACCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527046.5 ENST00000646768.1 |
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| CDS TCA 72 bp | GCTGGTCCAGGATGCCAGGCTCAGAAAGGCAGGTACTaGCTGAACACACTCCCCGCTTTGGTTCCTTCACTT | + |
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Preference number: 6 (lower is better) Translates to: AGPGCQAQKGRY*LNTLPALVPSL Trigger: AAGTGAAGGAACCAAAGCGGGGAGTGTGTTCAGTCAGTACCTGCCTTTCTGAGCCTGGCATCCTGGACCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000531430.5 ENST00000533242.1 ENST00000644446.1 ENST00000646348.1 |
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| CDS TCA 72 bp | GTCCAGGATGCCAGGCTCAGAAAGGCAGGTACTGACTaGACACACTCCCCGCTTTGGTTCCTTCACTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: VQDARLRKAGTD*THSPLWFLHFN Trigger: ATTAAAGTGAAGGAACCAAAGCGGGGAGTGTGTTCAGTCAGTACCTGCCTTTCTGAGCCTGGCATCCTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000531430.5 ENST00000533242.1 ENST00000644446.1 ENST00000646348.1 |
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| CDS TCA 72 bp | TCAATGTCAATCTCAATCTCCTTTCCGGTCAGCGTCTaGAACAGGCAATGGTTTCATGAGTCCTTAAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: SMSISISFPVSV*NRQWFHESLKP Trigger: GGGCTTTAAGGACTCATGAAACCATTGCCTGTTTCAGACGCTGACCGGAAAGGAGATTGAGATTGACATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS GCA 72 bp | TATGTTGGTCTTTGGGATCTACTGCCTTCTAAAAGATaGATATTCTCAGCAGCACTGCTTTGGAGAATGAGA | + |
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Preference number: 6 (lower is better) Translates to: YVGLWDLLPSKR*IFSAALLWRMR Trigger: TCTCATTCTCCAAAGCAGTGCTGCTGAGAATATGCATCTTTTAGAAGGCAGTAGATCCCAAAGACCAACATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS CCA 72 bp | GAAGACCTGCACATTATGGTTTTGTACGTCATGTCTTaGTTTAGACTACACTTTAGAGGGGATATGACGGTA | + |
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Preference number: 6 (lower is better) Translates to: EDLHIMVLYVMS*FRLHFRGDMTV Trigger: TACCGTCATATCCCCTCTAAAGTGTAGTCTAAACCAAGACATGACGTACAAAACCATAATGTGCAGGTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000533242.1 ENST00000646348.1 |
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| CDS TCA 72 bp | CAAGATTCTTTGAACCATCTGATCCTCTTAATTCCATaGGTCATCTTCCAACATCAGTCCCCCAAAATCAGT | + |
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Preference number: 6 (lower is better) Translates to: QDSLNHLILLIP*VIFQHQSPKIS Trigger: ACTGATTTTGGGGGACTGATGTTGGAAGATGACTCATGGAATTAAGAGGATCAGATGGTTCAAAGAATCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS CAA 90 bp | AATATAATGAAAAAGAAGCTAAAGGAAGACCTGCACATTATGGTTTaGTACGTCATGTCTTGGTTTAGACTACACTTTAGAGGGGATATG | + |
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Preference number: 6 (lower is better) Translates to: NIMKKKLKEDLHIMV*YVMSWFRLHFRGDM Trigger: CATATCCCCTCTAAAGTGTAGTCTAAACCAAGACATGACGTACAAAACCATAATGTGCAGGTCTTCCTTTAGCTTCTTTTTCATTATATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000533242.1 ENST00000646348.1 |
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| CDS TCA 72 bp | AAAGATGCATATTCTCAGCAGCACTGCTTTGGAGAATaGGAAGGCTTTGAACATACCTTCATTTATCAAATA | + |
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Preference number: 6 (lower is better) Translates to: KDAYSQQHCFGE*EGFEHTFIYQI Trigger: TATTTGATAAATGAAGGTATGTTCAAAGCCTTCTCATTCTCCAAAGCAGTGCTGCTGAGAATATGCATCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS CCA 72 bp | ATTTGTCTTCTAGGTAAAACATCCTATGTTGGTCTTTaGGATCTACTGCCTTCTAAAAGATGCATATTCTCA | + |
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Preference number: 6 (lower is better) Translates to: ICLLGKTSYVGL*DLLPSKRCIFS Trigger: TGAGAATATGCATCTTTTAGAAGGCAGTAGATCCCAAAGACCAACATAGGATGTTTTACCTAGAAGACAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000560427.1 ENST00000642906.1 |
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| CDS CAA 72 bp | AAAAAGAAGCTAAAGGAAGACCTGCACATTATGGTTTaGTACGTCATGTCTTGGTTTAGACTACACTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: KKKLKEDLHIMV*YVMSWFRLHFR Trigger: TCTAAAGTGTAGTCTAAACCAAGACATGACGTACAAAACCATAATGTGCAGGTCTTCCTTTAGCTTCTTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000533242.1 ENST00000646348.1 |
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