Pregenerated sensors for NDUFA4 (Homo sapiens)
Ensembl gene IDs: ENSG00000189043Ensembl transcript IDs: ENST00000339600.6, ENST00000463308.1, ENST00000470761.5, ENST00000492822.1
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCACCCTGCACCAAGACTCAGCAGCCAAAATTCTCAAGATCTCTTaGCTACTAGCACCATGGTTAGCACTGATAAACTCAGATTTCAAC | + |
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Preference number: 1 (lower is better) Translates to: CTLHQDSAAKILKIS*LLAPWLALINSDFN Trigger: GTTGAAATCTGAGTTTATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCTGAGTCTTGGTGCAGGGTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR GCA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGACCGGGAGGTAGAGGCTaGAGTGATCCATGTTTGTAC | + |
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Preference number: 2 (lower is better) Translates to: SRVILNRGRNEAILPTNGPGGRG*SDPCLY Trigger: GTACAAACATGGATCACTGCAGCCTCTACCTCCCGG...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR CAA 90 bp | CTGCACCCTGCACCAAGACTCAGCAGCCAAAATTCTCAAGATCTCTaGACTACTAGCACCATGGTTAGCACTGATAAACTCAGATTTCAA | + |
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Preference number: 2 (lower is better) Translates to: LHPAPRLSSQNSQDL*TTSTMVSTDKLRFQ Trigger: TTGAAATCTGAGTTTATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCTGAGTCTTGGTGCAGGGTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR GCA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGATGGCCTTTGAAAACCTaGACCATGGCTAAGCGCAAT | + |
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Preference number: 2 (lower is better) Translates to: SRVILNRGRNEAILPTNGWPLKT*TMAKRN Trigger: ATTGCGCTTAGCCATGGTGCAGGTTTTCAAAGGCCA...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR GCA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGATTTGCCAGTGTCAGATaGTGGAGTATCCTTCCCAAT | + |
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Preference number: 2 (lower is better) Translates to: SRVILNRGRNEAILPTNGFASVR*WSILPN Trigger: ATTGGGAAGGATACTCCAGCATCTGACACTGGCAAA...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR TCA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGAATGGAGTCTGGTAACTaGAAACACTCTACACACTCT | + |
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Preference number: 2 (lower is better) Translates to: SRVILNRGRNEAILPTNGMESGN*KHSTHS Trigger: AGAGTGTGTAGAGTGTTTTCAGTTACCAGACTCCAT...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR GCA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATACCATTGTTAAAAACTaGACACACTTCAACAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDTIVKN*THFNSQ Trigger: CTGGCTGTTGAAGTGTGTGCAGTTTTTAACAATGGT...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATAAAGCCAGTGTCAGATGCTaGAGTATCCTTCCCAATTTA | + |
|
Preference number: 2 (lower is better) Translates to: SQNSQDLLTTSTMVSTDKASVRC*SILPNL Trigger: TAAATTGGGAAGGATACTCCAGCATCTGACACTGGC...TTTATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR GCA 90 bp | AGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATAAATCCAGTTGTTATGTATaGTCTAGTGAAGTTACCAAC | + |
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Preference number: 2 (lower is better) Translates to: SQNSQDLLTTSTMVSTDKSSCYV*SSEVTN Trigger: GTTGGTAACTTCACTAGAGCATACATAACAACTGGA...TTTATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR TCA 72 bp | CCCCATCTTAAAATTATGAATATACTTCCTGGCCTTTaGAAACCTGCACCATGGCTAAGCGCAATGGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: PHLKIMNILPGL*KPAPWLSAMAH Trigger: GTGAGCCATTGCGCTTAGCCATGGTGCAGGTTTTCAAAGGCCAGGAAGTATATTCATAATTTTAAGATGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR CAA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATTCAAAGGTTTCCATTTaGCCAGTGTCAGATGCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDSKVSI*PVSDAG Trigger: TCCAGCATCTGACACTGGCAAAATGGAAACCTTTGA...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR CAA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGATATACTTCCTGGCCTTaGAAAACCTGCACCATGGCT | + |
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Preference number: 3 (lower is better) Translates to: SRVILNRGRNEAILPTNGYTSWP*KTCTMA Trigger: AGCCATGGTGCAGGTTTTCAAAGGCCAGGAAGTATA...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR-3UTR CAA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGATCAACAGTGGCAAGGTaGAGAAACCCTGTTCTTAGA | + |
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Preference number: 3 (lower is better) Translates to: SRVILNRGRNEAILPTNGSTVAR*RNPVLR Trigger: TCTAAGAACAGGGTTTCTCAACCTTGCCACTGTTGA...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR TCA 72 bp | TTGAGAAACCCTGTTCTTAGAGGTTCAAATTATACCTaGCACATAGGAGGTAAAAGCATGGAGTCTGGTAAC | + |
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Preference number: 3 (lower is better) Translates to: LRNPVLRGSNYT*HIGGKSMESGN Trigger: GTTACCAGACTCCATGCTTTTACCTCCTATGTGTCAGGTATAATTTGAACCTCTAAGAACAGGGTTTCTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR TCA 72 bp | AAACTGTCTTTCAGAAATAGTCAACAGTGGCAAGGTTaGGAAACCCTGTTCTTAGAGGTTCAAATTATACCT | + |
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Preference number: 3 (lower is better) Translates to: KLSFRNSQQWQG*ETLFLEVQIIP Trigger: AGGTATAATTTGAACCTCTAAGAACAGGGTTTCTCAACCTTGCCACTGTTGACTATTTCTGAAAGACAGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR GCA 72 bp | GAGAAACTCAAAGGTTTCCATTTTGCCAGTGTCAGATaGTGGAGTATCCTTCCCAATTTACTTTTGTATAAT | + |
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Preference number: 3 (lower is better) Translates to: EKLKGFHFASVR*WSILPNLLLYN Trigger: ATTATACAAAAGTAAATTGGGAAGGATACTCCAGCATCTGACACTGGCAAAATGGAAACCTTTGAGTTTCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR CCA 72 bp | AAACTCAAAGGTTTCCATTTTGCCAGTGTCAGATGCTaGAGTATCCTTCCCAATTTACTTTTGTATAATTTC | + |
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Preference number: 3 (lower is better) Translates to: KLKGFHFASVRC*SILPNLLLYNF Trigger: GAAATTATACAAAAGTAAATTGGGAAGGATACTCCAGCATCTGACACTGGCAAAATGGAAACCTTTGAGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR CCA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATGTAATCCCAGCACCCTaGGAGGCTGAGGAGAATGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDVIPAP*EAEENG Trigger: TCCATTCTCCTCAGCCTCCCAGGGTGCTGGGATTAC...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGAGCACTCCAGCCTGGGTaGCAGAGACTATCTCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: SRVILNRGRNEAILPTNGALQPG*QRLSQK Trigger: TTTTTGAGATAGTCTCTGTCACCCAGGCTGGAGTGC...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR GCA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATTGGCCTTTGAAAACCTaGACCATGGCTAAGCGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDWPLKT*TMAKRN Trigger: ATTGCGCTTAGCCATGGTGCAGGTTTTCAAAGGCCA...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | TCTAGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTTGCCCACCAATGGACAACAGTGGCAAGGTTaGGAAACCCTGTTCTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: SRVILNRGRNEAILPTNGQQWQG*ETLFLE Trigger: CTCTAAGAACAGGGTTTCTCAACCTTGCCACTGTTG...TCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR GCA 90 bp | TTCTATGATGTGATGACTTACACACACCTATGTGAAAACTTGCTATATTCCCCACCGGGAGGTAGAGGCTaGAGTGATCCATGTTTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: FYDVMTYTHLCENLLYSPPGGRG*SDPCLY Trigger: GTACAAACATGGATCACTGCAGCCTCTACCTCCCGG...TGGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAAGTCATCACATCATAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR CCA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATTCTTCTCATAGCCTGTaGGAATTGGAGGGAAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDSSHSL*ELEGKS Trigger: ACTCTTTCCCTCCAATTCCCACAGGCTATGAGAAGA...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR CAA 72 bp | TCAACAGCCAGTAAGAGAAACTCAAAGGTTTCCATTTaGCCAGTGTCAGATGCTGGAGTATCCTTCCCAATT | + |
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Preference number: 4 (lower is better) Translates to: STASKRNSKVSI*PVSDAGVSFPI Trigger: AATTGGGAAGGATACTCCAGCATCTGACACTGGCAAAATGGAAACCTTTGAGTTTCTCTTACTGGCTGTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATATGGAGTCTGGTAACTaGAAACACTCTACACACTCT | + |
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Preference number: 4 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDMESGN*KHSTHS Trigger: AGAGTGTGTAGAGTGTTTTCAGTTACCAGACTCCAT...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR GCA 90 bp | GTTCCAGTTGTTATGTATGCTCTAGTGAAGTTACCAACAGTCTATACACAAAATAGAAAACCTGCACCCTaGACCAAGACTCAGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VPVVMYALVKLPTVYTQNRKPAP*TKTQQP Trigger: TGGCTGCTGAGTCTTGGTGCAGGGTGCAGGTTTTCT...ATTTTGTGTATAGACTGTTGGTAACTTCACTAGAGCATACATAACAACTGGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR GCA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATGGAATGAAGCAATTTTaGCCACCAATGGACATTTGG | + |
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Preference number: 4 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDGMKQF*PPMDIW Trigger: CCAAATGTCCATTGGTGGGCAAAATTGCTTCATTCC...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | GTTCCAGTTGTTATGTATGCTCTAGTGAAGTTACCAACAGTCTATACACAAAATATACTTCCTGGCCTTTaGAAACCTGCACCATGGCTA | + |
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Preference number: 4 (lower is better) Translates to: VPVVMYALVKLPTVYTQNILPGL*KPAPWL Trigger: TAGCCATGGTGCAGGTTTTCAAAGGCCAGGAAGTAT...ATTTTGTGTATAGACTGTTGGTAACTTCACTAGAGCATACATAACAACTGGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR CCA 90 bp | TTCTATGATGTGATGACTTACACACACCTATGTGAAAACTTGCTATATTCCCCAGCCAGTGTCAGATGCTaGAGTATCCTTCCCAATTTA | + |
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Preference number: 4 (lower is better) Translates to: FYDVMTYTHLCENLLYSPASVRC*SILPNL Trigger: TAAATTGGGAAGGATACTCCAGCATCTGACACTGGC...TGGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAAGTCATCACATCATAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR CAA 72 bp | AGAGTAATTCTCAACAGAGGTAGGAATGAAGCAATTTaGCCCACCAATGGACATTTGGTAATGTCTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: RVILNRGRNEAI*PTNGHLVMSPF Trigger: GAATGGAGACATTACCAAATGTCCATTGGTGGGCAAAATTGCTTCATTCCTACCTCTGTTGAGAATTACTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | TTCTATGATGTGATGACTTACACACACCTATGTGAAAACTTGCTATATTCCCCATTACACACACCTATGTaGAAACTTGCTATATTCCCC | + |
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Preference number: 4 (lower is better) Translates to: FYDVMTYTHLCENLLYSPLHTPM*KLAIFP Trigger: GGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAA...TGGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAAGTCATCACATCATAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | TTCTATGATGTGATGACTTACACACACCTATGTGAAAACTTGCTATATTCCCCAGGTTCAAATTATACCTaGCACATAGGAGGTAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: FYDVMTYTHLCENLLYSPGSNYT*HIGGKS Trigger: GCTTTTACCTCCTATGTGTCAGGTATAATTTGAACC...TGGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAAGTCATCACATCATAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| 3UTR CAA 72 bp | AGTGTCAGATGCTGGAGTATCCTTCCCAATTTACTTTaGTATAATTTCCAGTTCCAGTTGTTATGTATGCTC | + |
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Preference number: 4 (lower is better) Translates to: SVRCWSILPNLL*YNFQFQLLCML Trigger: GAGCATACATAACAACTGGAACTGGAAATTATACAAAAGTAAATTGGGAAGGATACTCCAGCATCTGACACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR TCA 90 bp | GTTCCAGTTGTTATGTATGCTCTAGTGAAGTTACCAACAGTCTATACACAAAATATTCTCAAGATCTCTTaGCTACTAGCACCATGGTTA | + |
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Preference number: 4 (lower is better) Translates to: VPVVMYALVKLPTVYTQNILKIS*LLAPWL Trigger: TAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAAT...ATTTTGTGTATAGACTGTTGGTAACTTCACTAGAGCATACATAACAACTGGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR GCA 90 bp | GTTCCAGTTGTTATGTATGCTCTAGTGAAGTTACCAACAGTCTATACACAAAATACCATTGTTAAAAACTaGACACACTTCAACAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VPVVMYALVKLPTVYTQNTIVKN*THFNSQ Trigger: CTGGCTGTTGAAGTGTGTGCAGTTTTTAACAATGGT...ATTTTGTGTATAGACTGTTGGTAACTTCACTAGAGCATACATAACAACTGGAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR GCA 90 bp | GTTCCAGTTGTTATGTATGCTCTAGTGAAGTTACCAACAGTCTATACACAAAATAAGCTAAAAATTATCTaGAATGAGACACTACGGACT | + |
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Preference number: 4 (lower is better) Translates to: VPVVMYALVKLPTVYTQNKLKII*NETLRT Trigger: AGTCCGTAGTGTCTCATTGCAGATAATTTTTAGCTT...ATTTTGTGTATAGACTGTTGGTAACTTCACTAGAGCATACATAACAACTGGAAC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS CCA 90 bp | GTGAGGATTCCAAGATCACGGACCCCTCTTATTTACCAAAAGGCCTaGTGGTGCAATGCGGCGAATACAAGAACCTCCAGAGATGGTATA | + |
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Preference number: 5 (lower is better) Translates to: VRIPRSRTPLIYQKA*WCNAANTRTSRDGI Trigger: TATACCATCTCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTCCGTGATCTTGGAATCCTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS CCA 90 bp | AGGATTCCAAGATCACGGACCCCTCTTATTTACCAAAAGGCCTGGTaGTGCAATGCGGCGAATACAAGAACCTCCAGAGATGGTATAACA | + |
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Preference number: 5 (lower is better) Translates to: RIPRSRTPLIYQKAW*CNAANTRTSRDGIT Trigger: TGTTATACCATCTCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTCCGTGATCTTGGAATCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS GCA 90 bp | ATTCCAAGATCACGGACCCCTCTTATTTACCAAAAGGCCTGGTGGTaGAATGCGGCGAATACAAGAACCTCCAGAGATGGTATAACACAT | + |
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Preference number: 5 (lower is better) Translates to: IPRSRTPLIYQKAWW*NAANTRTSRDGITH Trigger: ATGTGTTATACCATCTCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTCCGTGATCTTGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS-3UTR CAA 90 bp | AGCAGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATTATACTTCCTGGCCTTaGAAAACCTGCACCATGGCT | + |
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Preference number: 5 (lower is better) Translates to: SSQNSQDLLTTSTMVSTDYTSWP*KTCTMA Trigger: AGCCATGGTGCAGGTTTTCAAAGGCCAGGAAGTATA...ATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR CAA 90 bp | TTCTATGATGTGATGACTTACACACACCTATGTGAAAACTTGCTATATTCCCCAGGGAAAGAGTGCTTTTaGTCTGTAGTGGCAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: FYDVMTYTHLCENLLYSPGKECF*SVVAEP Trigger: GGGCTCTGCCACTACAGACAAAAAGCACTCTTTCCC...TGGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAAGTCATCACATCATAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR CAA 90 bp | TTCTATGATGTGATGACTTACACACACCTATGTGAAAACTTGCTATATTCCCCATCAAAGGTTTCCATTTaGCCAGTGTCAGATGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: FYDVMTYTHLCENLLYSPSKVSI*PVSDAG Trigger: TCCAGCATCTGACACTGGCAAAATGGAAACCTTTGA...TGGGGAATATAGCAAGTTTTCACATAGGTGTGTGTAAGTCATCACATCATAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS-3UTR CAA 90 bp | AGCCAAAATTCTCAAGATCTCTTGACTACTAGCACCATGGTTAGCACTGATAAAAATTCTCAAGATCTCTaGACTACTAGCACCATGGTT | + |
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Preference number: 5 (lower is better) Translates to: SQNSQDLLTTSTMVSTDKNSQDL*TTSTMV Trigger: AACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATT...TTTATCAGTGCTAACCATGGTGCTAGTAGTCAAGAGATCTTGAGAATTTTGGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000339600.6 |
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| CDS GCA 90 bp | TTCAAATACTTAAAACACTGGCCAACGAGAGATTACAGTAGTTTCTaGACATTGATTTCCAAGTCTCAAACTGTTATTGGACTGTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: FKYLKHWPTRDYSSF*TLISKSQTVIGLFC Trigger: ACAAAACAGTCCAATAACAGTTTGAGACTTGGAAATCAATGTGCAGAAACTACTGTAATCTCTCGTTGGCCAGTGTTTTAAGTATTTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463308.1 |
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| CDS GCA 72 bp | CACAGCGCACATCTATCCCTCCTGGACCGCACAACCTaGAAAAGAGAGCGGCCACCAGACTGTTCCAATATT | + |
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Preference number: 6 (lower is better) Translates to: HSAHLSLLDRTT*KRERPPDCSNI Trigger: AATATTGGAACAGTCTGGTGGCCGCTCTCTTTTGCAGGTTGTGCGGTCCAGGAGGGATAGATGTGCGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS GCA 72 bp | TCACGGACCCCTCTTATTTACCAAAAGGCCTGGTGGTaGAATGCGGCGAATACAAGAACCTCCAGAGATGGT | + |
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Preference number: 6 (lower is better) Translates to: SRTPLIYQKAWW*NAANTRTSRDG Trigger: ACCATCTCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTCCGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS CCA 72 bp | CCAAGATCACGGACCCCTCTTATTTACCAAAAGGCCTaGTGGTGCAATGCGGCGAATACAAGAACCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PRSRTPLIYQKA*WCNAANTRTSR Trigger: TCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTCCGTGATCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS CCA 72 bp | AGATCACGGACCCCTCTTATTTACCAAAAGGCCTGGTaGTGCAATGCGGCGAATACAAGAACCTCCAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: RSRTPLIYQKAW*CNAANTRTSRD Trigger: ATCTCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTCCGTGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS GCA 72 bp | GACCCCTCTTATTTACCAAAAGGCCTGGTGGTGCAATaGGGCGAATACAAGAACCTCCAGAGATGGTATAAC | + |
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Preference number: 6 (lower is better) Translates to: DPSYLPKGLVVQ*GEYKNLQRWYN Trigger: GTTATACCATCTCTGGAGGTTCTTGTATTCGCCGCATTGCACCACCAGGCCTTTTGGTAAATAAGAGGGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470761.5 |
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| CDS CAA 72 bp | CACTGGCCAACGAGAGATTACAGTAGTTTCTGCACATaGATTTCCAAGTCTCAAACTGTTATTGGACTGTTT | + |
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Preference number: 6 (lower is better) Translates to: HWPTRDYSSFCT*ISKSQTVIGLF Trigger: AAACAGTCCAATAACAGTTTGAGACTTGGAAATCAATGTGCAGAAACTACTGTAATCTCTCGTTGGCCAGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463308.1 |
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| CDS TCA 72 bp | ACTGGCCAACGAGAGATTACAGTAGTTTCTGCACATTaGTTTCCAAGTCTCAAACTGTTATTGGACTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: TGQREITVVSAH*FPSLKLLLDCF Trigger: AAAACAGTCCAATAACAGTTTGAGACTTGGAAATCAATGTGCAGAAACTACTGTAATCTCTCGTTGGCCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463308.1 |
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| CDS GCA 72 bp | TTAAAACACTGGCCAACGAGAGATTACAGTAGTTTCTaGACATTGATTTCCAAGTCTCAAACTGTTATTGGA | + |
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Preference number: 6 (lower is better) Translates to: LKHWPTRDYSSF*TLISKSQTVIG Trigger: TCCAATAACAGTTTGAGACTTGGAAATCAATGTGCAGAAACTACTGTAATCTCTCGTTGGCCAGTGTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000463308.1 |
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| CDS CAA 90 bp | TACTTAAAACACTGGCCAACGAGAGATTACAGTAGTTTCTGCACATaGATTTCCAAGTCTCAAACTGTTATTGGACTGTTTTGTCTTAAA | + |
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Preference number: 6 (lower is better) Translates to: YLKHWPTRDYSSFCT*ISKSQTVIGLFCLK Trigger: TTTAAGACAAAACAGTCCAATAACAGTTTGAGACTTGGAAATCAATGTGCAGAAACTACTGTAATCTCTCGTTGGCCAGTGTTTTAAGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463308.1 |
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| CDS TCA 72 bp | GTATCTATTACAAATACTGGCTTTAAGCATTATCTCTaGAAACGTAATGCTACCAATGCTTGCTGCGTATTT | + |
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Preference number: 6 (lower is better) Translates to: VSITNTGFKHYL*KRNATNACCVF Trigger: AAATACGCAGCAAGCATTGGTAGCATTACGTTTTCAGAGATAATGCTTAAAGCCAGTATTTGTAATAGATAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492822.1 |
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