Pregenerated sensors for NDN (Homo sapiens)

Ensembl gene IDs: ENSG00000182636

Ensembl transcript IDs: ENST00000649030.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	AAGATGGAAACTTTCTCAATGTATTTCATCAGTTTAGCACATCTCTaGTACAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAA	+
Preference number: 1 (lower is better) Translates to: KMETFSMYFISLAHL*YKNPRKVAQKRKHQ Trigger: TTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTGTACCAGAGATGTGCTAAACTGATGAAATACATTGAGAAAGTTTCCATCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
3UTR-3UTR TCA 90 bp	ACAAATTTAGGAGTAATCATGAGTAGCGATTTTTCCCACCCTATTAGGGGAAATGGTCATGAAGGGCCTTaGCTTTTCTTGGTTAGGCCG	+
Preference number: 2 (lower is better) Translates to: TNLGVIMSSDFSHPIRGNGHEGP*LFLVRP Trigger: CGGCCTAACCAAGAAAAGTCAAGGCCCTTCATGACC...ATTTCCCCTAATAGGGTGGGAAAAATCGCTACTCATGATTACTCCTAAATTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000649030.2
3UTR-3UTR CCA 90 bp	ACAAATTTAGGAGTAATCATGAGTAGCGATTTTTCCCACCCTATTAGGGGAAATGGCCTTGACTTTTCTTaGTTAGGCCGGCTTTGCTGG	+
Preference number: 2 (lower is better) Translates to: TNLGVIMSSDFSHPIRGNGLDFS*LGRLCW Trigger: CCAGCAAAGCCGGCCTAACCAAGAAAAGTCAAGGCC...ATTTCCCCTAATAGGGTGGGAAAAATCGCTACTCATGATTACTCCTAAATTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000649030.2
3UTR-3UTR CCA 90 bp	CCAAACTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAAGTTTAGCACATCTCTaGTACAAAAATCCAAGAAAG	+
Preference number: 2 (lower is better) Translates to: PNSAGAVYPNTHHQSHIKSLAHL*YKNPRK Trigger: CTTTCTTGGATTTTTGTACCAGAGATGTGCTAAACT...TTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAGTTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000649030.2
3UTR GCA 72 bp	GCGAAAGCACCAACCAAGCTTACATATAAACAAACATaGATACATCCTAAATACTACACAATAGTACCCAAA	+
Preference number: 3 (lower is better) Translates to: AKAPTKLTYKQT*IHPKYYTIVPK Trigger: TTTGGGTACTATTGTGTAGTATTTAGGATGTATGCATGTTTGTTTATATGTAAGCTTGGTTGGTGCTTTCGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR TCA 90 bp	CCAAACTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAACACCCGGGCGAGGATaGGGCTGGTGCGCCGGAGGA	+
Preference number: 4 (lower is better) Translates to: PNSAGAVYPNTHHQSHIKTPGRG*GWCAGG Trigger: TCCTCCGGCGCACCAGCCTCATCCTCGCCCGGGTGT...TTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAGTTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CCAAACTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAATCCTCCGCAGCCTGCTaGAGGGCCTTCGGGTCGCCC	+
Preference number: 4 (lower is better) Translates to: PNSAGAVYPNTHHQSHIKSSAAC*RAFGSP Trigger: GGGCGACCCGAAGGCCCTGCAGCAGGCTGCGGAGGA...TTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAGTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CCAAACTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAACCCTCCTCCGCAGCCTaGTGCAGGGCCTTCGGGTCG	+
Preference number: 4 (lower is better) Translates to: PNSAGAVYPNTHHQSHIKPSSAA*CRAFGS Trigger: CGACCCGAAGGCCCTGCAGCAGGCTGCGGAGGAGGG...TTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAGTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAGAATAACCCCAGGGCTGCTGTaGACCTCGGAGTTGGGGGCC	+
Preference number: 4 (lower is better) Translates to: LCRSSLPQHTSSVPYKRITPGLL*TSELGA Trigger: GGCCCCCAACTCCGAGGTGCACAGCAGCCCTGGGGT...TATTCTTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATGCCTTCTGCACCAGCTaGGCCGGGGCTGGCGGTGCC	+
Preference number: 4 (lower is better) Translates to: QKSKKGSTKAKAPTKLTYAFCTS*AGAGGA Trigger: GGCACCGCCAGCCCCGGCGCAGCTGGTGCAGAAGGC...ATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	TCTCTGGTACAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTGGTTAGCCTCAGGTaGAGCCCGAACACCCGGGCG	+
Preference number: 4 (lower is better) Translates to: SLVQKSKKGSTKAKAPTKLVSLR*SPNTRA Trigger: CGCCCGGGTGTTCGGGCTGCACCTGAGGCTAACCAG...CTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTGTACCAGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	TCTCTGGTACAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGGGCCTGTCATGGGCATaGGGTTGCTCAGCGCCACCC	+
Preference number: 4 (lower is better) Translates to: SLVQKSKKGSTKAKAPTKGLSWA*GCSAPP Trigger: GGGTGGCGCTGAGCAACCGCATGCCCATGACAGGCC...CTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTGTACCAGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAGAATATCATGGGCATGCGGTTaGTCAGCGCCACCCTGTCCA	+
Preference number: 4 (lower is better) Translates to: LCRSSLPQHTSSVPYKRISWACG*SAPPCP Trigger: TGGACAGGGTGGCGCTGAGCAACCGCATGCCCATGA...TATTCTTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAGAATATGGTGCGCCGGAGGATaGTCCTGCACCACTTCTTGT	+
Preference number: 4 (lower is better) Translates to: LCRSSLPQHTSSVPYKRIWCAGG*SCTTSC Trigger: ACAAGAAGTGGTGCAGGAGCATCCTCCGGCGCACCA...TATTCTTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR TCA 90 bp	CCAAACTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAGGTCATGAAGGGCCTTaGCTTTTCTTGGTTAGGCCG	+
Preference number: 4 (lower is better) Translates to: PNSAGAVYPNTHHQSHIKGHEGP*LFLVRP Trigger: CGGCCTAACCAAGAAAAGTCAAGGCCCTTCATGACC...TTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAGTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	ACAAATTTAGGAGTAATCATGAGTAGCGATTTTTCCCACCCTATTAGGGGAAATGGAGCTCTTCGAGCCTaGGCTCCCTCCGCGGATTCC	+
Preference number: 4 (lower is better) Translates to: TNLGVIMSSDFSHPIRGNGALRA*APSADS Trigger: GGAATCCGCGGAGGGAGCGCAGGCTCGAAGAGCTCC...ATTTCCCCTAATAGGGTGGGAAAAATCGCTACTCATGATTACTCCTAAATTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	AATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATAAACCCGAAACCCCAGGGCTaGTGTGCACCTCGGAGTTGG	+
Preference number: 4 (lower is better) Translates to: NPRKVAQKRKHQPSLHINPKPQG*CAPRSW Trigger: CCAACTCCGAGGTGCACAGCAGCCCTGGGGTTTCGG...GTTTATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	TCTCTGGTACAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGTACCACATGAGCTCGTaGGCCTTCTGCACCAGCTGC	+
Preference number: 4 (lower is better) Translates to: SLVQKSKKGSTKAKAPTKYHMSS*AFCTSC Trigger: GCAGCTGGTGCAGAAGGCGCACGAGCTCATGTGGTA...CTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTGTACCAGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR CCA 90 bp	ACAAATTTAGGAGTAATCATGAGTAGCGATTTTTCCCACCCTATTAGGGGAAATCATGTCTGCGCCGTCTaGCAAGGGCAGGGCCTCTGC	+
Preference number: 4 (lower is better) Translates to: TNLGVIMSSDFSHPIRGNHVCAV*QGQGLC Trigger: GCAGAGGCCCTGCCCTTGCCAGACGGCGCAGACATG...ATTTCCCCTAATAGGGTGGGAAAAATCGCTACTCATGATTACTCCTAAATTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR CCA 90 bp	CAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATGGGCGGCTCCACGTATaGGACGCGCTGGTACTTCAG	+
Preference number: 4 (lower is better) Translates to: QKSKKGSTKAKAPTKLTYGRLHV*DALVLQ Trigger: CTGAAGTACCAGCGCGTCCCATACGTGGAGCCGCCC...ATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR TCA 90 bp	AATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATAAACCCAGCACGTACCACATaGGCTCGTGCGCCTTCTGCA	+
Preference number: 4 (lower is better) Translates to: NPRKVAQKRKHQPSLHINPARTT*ARAPSA Trigger: TGCAGAAGGCGCACGAGCTCATGTGGTACGTGCTGG...GTTTATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	AATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATAAACGCCGGAGGATGCTCCTaGACCACTTCTTGTAGCTGC	+
Preference number: 4 (lower is better) Translates to: NPRKVAQKRKHQPSLHINAGGCS*TTSCSC Trigger: GCAGCTACAAGAAGTGGTGCAGGAGCATCCTCCGGC...GTTTATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	AATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATAAACAGTCCTCAGAGACACTaGTGCGAGGGTAGTGGGCAG	+
Preference number: 4 (lower is better) Translates to: NPRKVAQKRKHQPSLHINSPQRH*CEGSGQ Trigger: CTGCCCACTACCCTCGCAGCAGTGTCTCTGAGGACT...GTTTATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR CCA 90 bp	CAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATCCAGCGCAAACTCCATaGTGTGCAGGCTGGTTAGCC	+
Preference number: 4 (lower is better) Translates to: QKSKKGSTKAKAPTKLTYPAQTP*CAGWLA Trigger: GGCTAACCAGCCTGCACACCATGGAGTTTGCGCTGG...ATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR TCA 90 bp	CAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATGGCCGGCTTTGCTGGTaGCTTCTTCCAAACTCTGCA	+
Preference number: 4 (lower is better) Translates to: QKSKKGSTKAKAPTKLTYGRLCW*LLPNSA Trigger: TGCAGAGTTTGGAAGAAGTCACCAGCAAAGCCGGCC...ATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CAAAAATCCAAGAAAGGTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATGCAAACTCCATGGTGTaGAGGCTGGTTAGCCTCAGG	+
Preference number: 4 (lower is better) Translates to: QKSKKGSTKAKAPTKLTYANSMV*RLVSLR Trigger: CCTGAGGCTAACCAGCCTGCACACCATGGAGTTTGC...ATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTACCTTTCTTGGATTTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR GCA 90 bp	CTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAGAATAACTTCTTCCAAACTCTaGAGGAGCAGTCTACCCCAA	+
Preference number: 4 (lower is better) Translates to: LCRSSLPQHTSSVPYKRITSSKL*RSSLPQ Trigger: TTGGGGTAGACTGCTCCTGCAGAGTTTGGAAGAAGT...TATTCTTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR CCA 90 bp	GTAGCACAAAAGCGAAAGCACCAACCAAGCTTACATATAAACAAACATGCATACGGCCTTGACTTTTCTTaGTTAGGCCGGCTTTGCTGG	+
Preference number: 4 (lower is better) Translates to: VAQKRKHQPSLHINKHAYGLDFS*LGRLCW Trigger: CCAGCAAAGCCGGCCTAACCAAGAAAAGTCAAGGCC...GTATGCATGTTTGTTTATATGTAAGCTTGGTTGGTGCTTTCGCTTTTGTGCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR TCA 90 bp	ACAAATTTAGGAGTAATCATGAGTAGCGATTTTTCCCACCCTATTAGGGGAAATGCCAAGTGCTCACACTaGGACCAGTCCAGTTCAAAT	+
Preference number: 4 (lower is better) Translates to: TNLGVIMSSDFSHPIRGNAKCSH*DQSSSN Trigger: ATTTGAACTGGACTGGTCTCAGTGTGAGCACTTGGC...ATTTCCCCTAATAGGGTGGGAAAAATCGCTACTCATGATTACTCCTAAATTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR CCA 90 bp	ACAAATTTAGGAGTAATCATGAGTAGCGATTTTTCCCACCCTATTAGGGGAAATAGTTTAGCACATCTCTaGTACAAAAATCCAAGAAAG	+
Preference number: 4 (lower is better) Translates to: TNLGVIMSSDFSHPIRGNSLAHL*YKNPRK Trigger: CTTTCTTGGATTTTTGTACCAGAGATGTGCTAAACT...ATTTCCCCTAATAGGGTGGGAAAAATCGCTACTCATGATTACTCCTAAATTTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS TCA 90 bp	GCAGGCTGGTTAGCCTCAGGTGCAGCCCGAACACCCGGGCGAGGATaGGGCTGGTGCGCCGGAGGATGCTCCTGCACCACTTCTTGTAGC	+
Preference number: 5 (lower is better) Translates to: AGWLASGAARTPGRG*GWCAGGCSCTTSCS Trigger: GCTACAAGAAGTGGTGCAGGAGCATCCTCCGGCGCACCAGCCTCATCCTCGCCCGGGTGTTCGGGCTGCACCTGAGGCTAACCAGCCTGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS-3UTR CAA 90 bp	CCAAACTCTGCAGGAGCAGTCTACCCCAACACACATCATCAGTCCCATATAAAAGTCATGGGCATGCGGTaGCTCAGCGCCACCCTGTCC	+
Preference number: 5 (lower is better) Translates to: PNSAGAVYPNTHHQSHIKVMGMR*LSATLS Trigger: GGACAGGGTGGCGCTGAGCAACCGCATGCCCATGAC...TTTTATATGGGACTGATGATGTGTGTTGGGGTAGACTGCTCCTGCAGAGTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649030.2
CDS TCA 72 bp	TTAGCCTCAGGTGCAGCCCGAACACCCGGGCGAGGATaGGGCTGGTGCGCCGGAGGATGCTCCTGCACCACT	+
Preference number: 6 (lower is better) Translates to: LASGAARTPGRG*GWCAGGCSCTT Trigger: AGTGGTGCAGGAGCATCCTCCGGCGCACCAGCCTCATCCTCGCCCGGGTGTTCGGGCTGCACCTGAGGCTAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649030.2

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