RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCS1 (Homo sapiens)

Ensembl gene IDs: ENSG00000107130

Ensembl transcript IDs: ENST00000372398.6, ENST00000493042.1, ENST00000630865.1

Found 362 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAGACGCTACGAGGAAGAGGACAGGCCGTGGCCGACTGGCCGCCTaGGGCTGGTGCCTGCCCTGGCCCCAGTGCGAGGCTCTGCAGAGG +
Preference number: 1 (lower is better)
Translates to: ADATRKRTGRGRLAA*GWCLPWPQCEALQR
Trigger: CCTCTGCAGAGCCTCGCACTGGGGCCAGGGCAGGCACCAGCCCCAGGCGGCCAGTCGGCCACGGCCTGTCCTCTTCCTCGTAGCGTCTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp CTTGGCCGCTGCAGGCCACCATCCTCCCAAGTCGGCGTGGGCAGGTaGGTCAGGGCGTGCACATGTAAACGGTGGGCCCGCAGCCCTGGG +
Preference number: 1 (lower is better)
Translates to: LGRCRPPSSQVGVGR*VRACTCKRWARSPG
Trigger: CCCAGGGCTGCGGGCCCACCGTTTACATGTGCACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGGATGGTGGCCTGCAGCGGCCAAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp ACCTTGGGCTCCTACCTCTGGTCCAGGGTGGCCTCGCATTCCTGGTaGTGGTCCTGGGGCCGCACCTGCCTCAGTGGCAGGCACCGCTGG +
Preference number: 1 (lower is better)
Translates to: TLGSYLWSRVASHSW*WSWGRTCLSGRHRW
Trigger: CCAGCGGTGCCTGCCACTGAGGCAGGTGCGGCCCCAGGACCATCACCAGGAATGCGAGGCCACCCTGGACCAGAGGTAGGAGCCCAAGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp GGCCTCGCATTCCTGGTGATGGTCCTGGGGCCGCACCTGCCTCAGTaGCAGGCACCGCTGGAAGCCTCCGTGAAGACATGTGGGCCGCAG +
Preference number: 1 (lower is better)
Translates to: GLAFLVMVLGPHLPQ*QAPLEASVKTCGPQ
Trigger: CTGCGGCCCACATGTCTTCACGGAGGCTTCCAGCGGTGCCTGCCACTGAGGCAGGTGCGGCCCCAGGACCATCACCAGGAATGCGAGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp GCAAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGGAGGCACCTaGCTCAGGATTCTGCGGCATCACTGCAGCCAGAGGCCTGGGGAG +
Preference number: 1 (lower is better)
Translates to: ANAAVERRTGCSGGT*LRILRHHCSQRPGE
Trigger: CTCCCCAGGCCTCTGGCTGCAGTGATGCCGCAGAATCCTGAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp GGCAGAACCCCTAGACACCCTCGGCCCACCCACAGCCTCTCCGGCTaGCGAAGGACGAGGGACGAGGGCAAGGCAGAGTTCTCTGAGGTC +
Preference number: 1 (lower is better)
Translates to: GRTPRHPRPTHSLSG*RRTRDEGKAEFSEV
Trigger: GACCTCAGAGAACTCTGCCTTGCCCTCGTCCCTCGTCCTTCGGCAGCCGGAGAGGCTGTGGGTGGGCCGAGGGTGTCTAGGGGTTCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp CAGCTCTGGGCTGGCTCGGGCTGTGGGCCCACCGGCATGCTGGGCTaGGGTCCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCT +
Preference number: 1 (lower is better)
Translates to: QLWAGSGCGPTGMLG*GPQAYHLLRPEATP
Trigger: AGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAGCATGCCGGTGGGCCCACAGCCCGAGCCAGCCCAGAGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp GAGCCGCATTGGGTGGCAAACGCCGCTGTGGAGAGGCGCACGGGCTaGTCAGGAGGCACCTGGCTCAGGATTCTGCGGCATCACTGCAGC +
Preference number: 1 (lower is better)
Translates to: EPHWVANAAVERRTG*SGGTWLRILRHHCS
Trigger: GCTGCAGTGATGCCGCAGAATCCTGAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTTGCCACCCAATGCGGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp GGGTCAAGGGCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTaGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCAC +
Preference number: 1 (lower is better)
Translates to: GSRAAGCVWMRKKAG*THGVGVRAEVASWH
Trigger: GTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGCCCTTGACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CCA 90 bp GGGCGTGCCCTCTGCATCAGAGCATCTGAAGCGAGCCGCATTGGGTaGCAAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGGAGGCA +
Preference number: 1 (lower is better)
Translates to: GRALCIRASEASRIG*QTPLWRGARAAQEA
Trigger: TGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAGATGCTCTGATGCAGAGGGCACGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp TTTGGCTTCTTGGCCGCTGCAGGCCACCATCCTCCCAAGTCGGCGTaGGCAGGTGGGTCAGGGCGTGCACATGTAAACGGTGGGCCCGCA +
Preference number: 1 (lower is better)
Translates to: FGFLAAAGHHPPKSA*AGGSGRAHVNGGPA
Trigger: TGCGGGCCCACCGTTTACATGTGCACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGGATGGTGGCCTGCAGCGGCCAAGAAGCCAAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp CAAAGAGCAAGGGCCGGACCTTGGGCTCCTACCTCTGGTCCAGGGTaGCCTCGCATTCCTGGTGATGGTCCTGGGGCCGCACCTGCCTCA +
Preference number: 1 (lower is better)
Translates to: QRARAGPWAPTSGPG*PRIPGDGPGAAPAS
Trigger: TGAGGCAGGTGCGGCCCCAGGACCATCACCAGGAATGCGAGGCCACCCTGGACCAGAGGTAGGAGCCCAAGGTCCGGCCCTTGCTCTTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp GGCTCTGCAGAGGGACTATGGGCGTGCCCTCTGCATCAGAGCATCTaGAGCGAGCCGCATTGGGTGGCAAACGCCGCTGTGGAGAGGCGC +
Preference number: 1 (lower is better)
Translates to: GSAEGLWACPLHQSI*SEPHWVANAAVERR
Trigger: GCGCCTCTCCACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAGATGCTCTGATGCAGAGGGCACGCCCATAGTCCCTCTGCAGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTaGGCCTCCCTGGGGCCGGGAGCCACTGCAGGAACAGGGACAACA +
Preference number: 1 (lower is better)
Translates to: KVLKEASHRVRLGVR*ASLGPGATAGTGTT
Trigger: TGTTGTCCCTGTTCCTGCAGTGGCTCCCGGCCCCAGGGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp GATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTaGGGTGGCCTCATGGCACAGAAGGAGGTGAGTGGTTCCCAGGCA +
Preference number: 1 (lower is better)
Translates to: DAEEGWVDARGWCQG*GGLMAQKEVSGSQA
Trigger: TGCCTGGGAACCACTCACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR GCA 90 bp TTCCGCCTGGCGGGTGGGCAATGGAGGCTTTTTCCAGAGACAGCCTaGCTCTCCAGGAAGGGATCCCAGGCATCCCGACCTCCCCACCAA +
Preference number: 1 (lower is better)
Translates to: FRLAGGQWRLFPETA*LSRKGSQASRPPHQ
Trigger: TTGGTGGGGAGGTCGGGATGCCTGGGATCCCTTCCTGGAGAGGCAGGCTGTCTCTGGAAAAAGCCTCCATTGCCCACCCGCCAGGCGGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTaGCCTCATGGCACAGAAGGAGGTGAGTGGTTCCCAGGCATCCAG +
Preference number: 1 (lower is better)
Translates to: GRRLGGRTGLVSGLR*PHGTEGGEWFPGIQ
Trigger: CTGGATGCCTGGGAACCACTCACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR GCA 90 bp CACGGCAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTaGTTGCTGAGGGTGGGAACCGAGGACCAAAGTGTCCCCTCTAAA +
Preference number: 1 (lower is better)
Translates to: HGNVTTAEAFLGLEA*LLRVGTEDQSVPSK
Trigger: TTTAGAGGGGACACTTTGGTCCTCGGTTCCCACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTGCCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp CTTGCTATCCAGGGATGGCCTAGCAGAGGGGTGTCTGGGAAACGCTaGCAGAAATGTGGTGGCCCAGGGCCTCTGAGGACTCACAGCCCC +
Preference number: 1 (lower is better)
Translates to: LAIQGWPSRGVSGKR*QKCGGPGPLRTHSP
Trigger: GGGGCTGTGAGTCCTCAGAGGCCCTGGGCCACCACATTTCTGGCAGCGTTTCCCAGACACCCCTCTGCTAGGCCATCCCTGGATAGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp AGAGGGCAGGAGGCTGCCCACAATCAAAGAGCAAGGGCCGGACCTTaGGCTCCTACCTCTGGTCCAGGGTGGCCTCGCATTCCTGGTGAT +
Preference number: 1 (lower is better)
Translates to: RGQEAAHNQRARAGP*APTSGPGWPRIPGD
Trigger: ATCACCAGGAATGCGAGGCCACCCTGGACCAGAGGTAGGAGCCCAAGGTCCGGCCCTTGCTCTTTGATTGTGGGCAGCCTCCTGCCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp CTCCGGCTGCCGAAGGACGAGGGACGAGGGCAAGGCAGAGTTCTCTaGGGTCCCCAGGCCTTCACCCCATCTGTCAGTCTGTGTCTTCTA +
Preference number: 1 (lower is better)
Translates to: LRLPKDEGRGQGRVL*GPQAFTPSVSLCLL
Trigger: TAGAAGACACAGACTGACAGATGGGGTGAAGGCCTGGGGACCTCAGAGAACTCTGCCTTGCCCTCGTCCCTCGTCCTTCGGCAGCCGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp GCCCTGACAGTCTGGGAAGCGGCTTCTCACCTCAAGCCTTCCCTGTaGAAGGACTCCTTCTGGGTCCCAAAGAGCGCTCAAGGGTCTGGG +
Preference number: 1 (lower is better)
Translates to: ALTVWEAASHLKPSL*KDSFWVPKSAQGSG
Trigger: CCCAGACCCTTGAGCGCTCTTTGGGACCCAGAAGGAGTCCTTGCACAGGGAAGGCTTGAGGTGAGAAGCCGCTTCCCAGACTGTCAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp CCTGCCTCAGTGGCAGGCACCGCTGGAAGCCTCCGTGAAGACATGTaGGCCGCAGCCCCAGGTGTAGGGACTATATTGATGGGATTGCCT +
Preference number: 1 (lower is better)
Translates to: PASVAGTAGSLREDM*AAAPGVGTILMGLP
Trigger: AGGCAATCCCATCAATATAGTCCCTACACCTGGGGCTGCGGCCCACATGTCTTCACGGAGGCTTCCAGCGGTGCCTGCCACTGAGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp GGCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTaGGCACCGTCCTCCACTTCTGTGAGGGGCTTTGATGATGACACT +
Preference number: 1 (lower is better)
Translates to: GRLRVGGSSSPNRYS*APSSTSVRGFDDDT
Trigger: AGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp GGGCAGGACGATGGAGGAAGGCCGGACACACCGAAGGGGTCCACATaGTTAAGCCCAGACACCCTCAGCCACAGGTCAGGTTGTACAACA +
Preference number: 1 (lower is better)
Translates to: GQDDGGRPDTPKGST*LSPDTLSHRSGCTT
Trigger: TGTTGTACAACCTGACCTGTGGCTGAGGGTGTCTGGGCTTAAGCATGTGGACCCCTTCGGTGTGTCCGGCCTTCCTCCATCGTCCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp CAGGGAGCCGACTGGCAGGGGCCTCAAAGAATCCACCCTTCAAAGTaGCCTGTGAAGGTGGAACCACTGACCCCATCCCTGCAGGATGTT +
Preference number: 1 (lower is better)
Translates to: QGADWQGPQRIHPSK*PVKVEPLTPSLQDV
Trigger: AACATCCTGCAGGGATGGGGTCAGTGGTTCCACCTTCACAGGCCACTTTGAAGGGTGGATTCTTTGAGGCCCCTGCCAGTCGGCTCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp AGCCACACCTGTGGCTTCAAACCAAAAGGCCAAAGGGCAGGACGATaGAGGAAGGCCGGACACACCGAAGGGGTCCACATGCTTAAGCCC +
Preference number: 1 (lower is better)
Translates to: SHTCGFKPKGQRAGR*RKAGHTEGVHMLKP
Trigger: GGGCTTAAGCATGTGGACCCCTTCGGTGTGTCCGGCCTTCCTCCATCGTCCTGCCCTTTGGCCTTTTGGTTTGAAGCCACAGGTGTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp AGCATCACCAGCCACAGGAAACTGAACCCCAGGCCTAGAGTGACATaGTGTCGGCATGGAAAAGGGCCTTCAAGACCAACCAGCCCGGGC +
Preference number: 1 (lower is better)
Translates to: SITSHRKLNPRPRVT*CRHGKGPSRPTSPG
Trigger: GCCCGGGCTGGTTGGTCTTGAAGGCCCTTTTCCATGCCGACATCATGTCACTCTAGGCCTGGGGTTCAGTTTCCTGTGGCTGGTGATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp GCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCCTCCACTTCTGTaGGGGGCTTTGATGATGACACTCACATTTGGGTCTCACCAGGCC +
Preference number: 1 (lower is better)
Translates to: AAVQTATLGHRPPLL*GALMMTLTFGSHQA
Trigger: GGCCTGGTGAGACCCAAATGTGAGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp GCTCCCATCCAAGGGATGGGGAAATTGAGACCCAATGAGCAGAACTaGCTTGCGCAAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCT +
Preference number: 1 (lower is better)
Translates to: APIQGMGKLRPNEQN*LAQSPEGSQPPSQA
Trigger: AGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTTGCGCAAGTCAGTTCTGCTCATTGGGTCTCAATTTCCCCATCCCTTGGATGGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 90 bp ACACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTaGACCAGAGAGGCAAATCGAGCCTCAGGCAGAGGCCAAAGGAAA +
Preference number: 1 (lower is better)
Translates to: TPSATGQVVQQCQSH*TREANRASGRGQRK
Trigger: TTTCCTTTGGCCTCTGCCTGAGGCTCGATTTGCCTCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 90 bp TTAGCTCCCTTAAAATTAAATGCTGAAACCGCGCTGGGAACAGGGTaGCTTTCCGCCTGGCGGGTGGGCAATGGAGGCTTTTTCCAGAGA +
Preference number: 1 (lower is better)
Translates to: LAPLKLNAETALGTG*LSAWRVGNGGFFQR
Trigger: TCTCTGGAAAAAGCCTCCATTGCCCACCCGCCAGGCGGAAAGTCACCCTGTTCCCAGCGCGGTTTCAGCATTTAATTTTAAGGGAGCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp GAGGGTGACACGTACGCTTGCCTTGATGTTATTTTAAACGTGGCCTaGTTAGATCATGGAAAATCGGAACATTCTCCTAAGTCACCATCA +
Preference number: 1 (lower is better)
Translates to: EGDTYACLDVILNVA*LDHGKSEHSPKSPS
Trigger: TGATGGTGACTTAGGAGAATGTTCCGATTTTCCATGATCTAAGCAGGCCACGTTTAAAATAACATCAAGGCAAGCGTACGTGTCACCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 90 bp CATTTCAGGGGAAGAGATGTCAGTACAGAGGGTGACACGTACGCTTaGCTTGATGTTATTTTAAACGTGGCCTGCTTAGATCATGGAAAA +
Preference number: 1 (lower is better)
Translates to: HFRGRDVSTEGDTYA*LDVILNVACLDHGK
Trigger: TTTTCCATGATCTAAGCAGGCCACGTTTAAAATAACATCAAGGCAAGCGTACGTGTCACCCTCTGTACTGACATCTCTTCCCCTGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCCCAGTGCGAGGCTCTaGAGAGGGACTATGGGCGTG +
Preference number: 2 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRPSARL*RGTMGV
Trigger: CACGCCCATAGTCCCTCTGCAGAGCCTCGCACTGGG...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 90 bp CCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTaGGTGTCAGGGCTGAGGTGGCCTCATGGCACAGAAGGAGGTGAG +
Preference number: 2 (lower is better)
Translates to: PAVCGCGRRLGGRTG*VSGLRWPHGTEGGE
Trigger: CTCACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CAA 90 bp ACTATGGGCGTGCCCTCTGCATCAGAGCATCTGAAGCGAGCCGCATaGGGTGGCAAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: TMGVPSASEHLKRAA*GGKRRCGEAHGLLR
Trigger: CCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAGATGCTCTGATGCAGAGGGCACGCCCATAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp CGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGCAGCCGGCTGTGTGTaGATGCGGAAGAAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: RTSRGCWQLEPVASGGGWAAGCV*MRKKAG
Trigger: CCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC...CCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR CCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCTGGCCCTGACAGTCTaGGAAGCGGCTTCTCACCTC +
Preference number: 2 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRLALTV*EAASHL
Trigger: GAGGTGAGAAGCCGCTTCCCAGACTGTCAGGGCCAG...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTTGGCTTCTTGGCCGCTaGAGGCCACCATCCTCCCAA +
Preference number: 2 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGWLLGR*RPPSSQ
Trigger: TTGGGAGGATGGTGGCCTGCAGCGGCCAAGAAGCCA...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCCGAAGGGGTCCACATaGTTAAGCCCAGACACCCTC +
Preference number: 2 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRPKGST*LSPDTL
Trigger: GAGGGTGTCTGGGCTTAAGCATGTGGACCCCTTCGG...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp AGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGGGTTGGTGTCAGGGCTaGGGTGGCCTCATGGCACAG +
Preference number: 2 (lower is better)
Translates to: REREERRLPARQPSPWFMGWCQG*GGLMAQ
Trigger: CTGTGCCATGAGGCCACCTCAGCCCTGACACCAACC...CATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR GCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTGAGAGGGCAGGAGGCTaGCCACAATCAAAGAGCAAG +
Preference number: 2 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRERAGG*PQSKSK
Trigger: CTTGCTCTTTGATTGTGGGCAGCCTCCTGCCCTCTC...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp CCCCTGCGAGGCAGGCCCAGCAGAGACTCTTGCTCCCATCCAAGGGATGGGGAAGGGGGAACCAGGAAATaGTGCGGGAAGGGACAAGGT +
Preference number: 2 (lower is better)
Translates to: PLRGRPSRDSCSHPRDGEGGTRK*CGKGQG
Trigger: ACCTTGTCCCTTCCCGCAGCATTTCCTGGTTCCCCC...TTCCCCATCCCTTGGATGGGAGCAAGAGTCTCTGCTGGGCCTGCCTCGCAGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCTGGCGGGTGGGCAATaGAGGCTTTTTCCAGAGACA +
Preference number: 2 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRLAGGQ*RLFPET
Trigger: TGTCTCTGGAAAAAGCCTCCATTGCCCACCCGCCAG...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 90 bp GGCAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTaGCTGAGGGTGGGAACCGAGGACCAAAGTGTCCCCTCTAAAACA +
Preference number: 2 (lower is better)
Translates to: GNVTTAEAFLGLEAC*LRVGTEDQSVPSKT
Trigger: TGTTTTAGAGGGGACACTTTGGTCCTCGGTTCCCACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGGTTGGTGTCAGGGCTaGGGTGGCCTCATGGCACAG +
Preference number: 2 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYGWCQG*GGLMAQ
Trigger: CTGTGCCATGAGGCCACCTCAGCCCTGACACCAACC...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR CCA 90 bp AGATCGGTCCCTGCCAGGCAAACTCTAGTGAAAATGGCCAGTGTCCAGCACCCCGTCGGCGTGGGCAGGTaGGTCAGGGCGTGCACATGT +
Preference number: 2 (lower is better)
Translates to: RSVPARQTLVKMASVQHPVGVGR*VRACTC
Trigger: ACATGTGCACGCCCTGACCCACCTGCCCACGCCGAC...GGGGTGCTGGACACTGGCCATTTTCACTAGAGTTTGCCTGGCAGGGACCGATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCACCCCAGGCCTAGAGTaGCATGATGTCGGCATGGAA +
Preference number: 2 (lower is better)
Translates to: KVLKEASHRVRLGVRWASTPGLE*HDVGME
Trigger: TTCCATGCCGACATCATGTCACTCTAGGCCTGGGGT...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp ACACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTGGACCAGATTCAGCCGTTGGTGCTaGGTCCCAGGTCGCCCGGGC +
Preference number: 2 (lower is better)
Translates to: TPSATGQVVQQCQSHWTRFSRWC*VPGRPG
Trigger: GCCCGGGCGACCTGGGACTCAGCACCAACGGCTGAA...TCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCAGGTCAGAGCCCAGCTaGGAAACTTCAGCCGTTGGT +
Preference number: 2 (lower is better)
Translates to: KVLKEASHRVRLGVRWASRSEPS*ETSAVG
Trigger: ACCAACGGCTGAAGTTTCTCAGCTGGGCTCTGACCT...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCCTTGCTATCCAGGGATaGCCTAGCAGAGGGGTGTCT +
Preference number: 2 (lower is better)
Translates to: KVLKEASHRVRLGVRWASLAIQG*PSRGVS
Trigger: AGACACCCCTCTGCTAGGCCATCCCTGGATAGCAAG...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp AGGCAGAGTTCTCTGAGGTCCCCAGGCCTTCACCCCATCTGTCAGTCTGTGTCTGAGGTTGCTGGCAATTaGAGCCGGTGGCTTCAGGCG +
Preference number: 2 (lower is better)
Translates to: RQSSLRSPGLHPICQSVSEVAGN*SRWLQA
Trigger: CGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTC...AGACACAGACTGACAGATGGGGTGAAGGCCTGGGGACCTCAGAGAACTCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp CCGTCCTCCACTTCTGTGAGGGGCTTTGATGATGACACTCACATTTGGGTCTCAGTGGGCCCGCAGCCCTaGGAGCTGAGGACACACCAG +
Preference number: 2 (lower is better)
Translates to: PSSTSVRGFDDDTHIWVSVGPQP*ELRTHQ
Trigger: CTGGTGTGTCCTCAGCTCCCAGGGCTGCGGGCCCAC...TGAGACCCAAATGTGAGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp AGGAGGCATTCGGGCTGGAGGGAACAGTGCATTAGCCATTTAGGAATTTCCACCCCTCCCAAGTCGGCGTaGGCAGGTGGGTCAGGGCGT +
Preference number: 2 (lower is better)
Translates to: RRHSGWREQCISHLGISTPPKSA*AGGSGR
Trigger: ACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGG...GGTGGAAATTCCTAAATGGCTAATGCACTGTTCCCTCCAGCCCGAATGCCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp CTGGGCTGCGGTCCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGTCTCCTGACTCTGCCTaGGTACCCAATGCCCCTTCT +
Preference number: 2 (lower is better)
Translates to: LGCGPQAYHLLRPEATPVSPDSA*VPNAPS
Trigger: AGAAGGGGCATTGGGTACCCAGGCAGAGTCAGGAGA...CACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCGCCTGGATGCTAAGATaGCAAGACAGAAGATGGGAC +
Preference number: 2 (lower is better)
Translates to: KVLKEASHRVRLGVRWASAWMLR*QDRRWD
Trigger: GTCCCATCTTCTGTCTTGGCATCTTAGCATCCAGGC...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGCGGAAGAAGGCTGGGTaGACGCACGGGGTTGGTGTC +
Preference number: 2 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVRKKAG*THGVGV
Trigger: GACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR CCA 90 bp CCGTCCTCCACTTCTGTGAGGGGCTTTGATGATGACACTCACATTTGGGTCTCAGCAGCCGGCTGTGTGTaGATGCGGAAGAAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: PSSTSVRGFDDDTHIWVSAAGCV*MRKKAG
Trigger: CCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC...TGAGACCCAAATGTGAGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 90 bp GACACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATaGGACCAGAGAGGCAAATCGAGCCTCAGGCAGAGGCCAAAGGAA +
Preference number: 2 (lower is better)
Translates to: DTLSHRSGCTTVSVP*DQRGKSSLRQRPKE
Trigger: TTCCTTTGGCCTCTGCCTGAGGCTCGATTTGCCTCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 90 bp GGGGTCCACATGCTTAAGCCCAGACACCCTCAGCCACAGGTCAGGTaGTACAACAGTGTCAGTCCCATTGGACCAGAGAGGCAAATCGAG +
Preference number: 2 (lower is better)
Translates to: GVHMLKPRHPQPQVR*YNSVSPIGPERQIE
Trigger: CTCGATTTGCCTCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGTGTCTGGGCTTAAGCATGTGGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp CTGGGCTGCGGTCCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGGAAGGGACAAGGTGTaGCACATGACACATTCATCT +
Preference number: 2 (lower is better)
Translates to: LGCGPQAYHLLRPEATPVGRDKV*HMTHSS
Trigger: AGATGAATGTGTCATGTGGCACACCTTGTCCCTTCC...CACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 90 bp ACCGAGGACCAAAGTGTCCCCTCTAAAACATGGGCTGATGGGCTGTaGACTCTGCAAAGCAGCAGCAAGAATTCTAGACCCAGGCCTGGC +
Preference number: 2 (lower is better)
Translates to: TEDQSVPSKTWADGL*TLQSSSKNSRPRPG
Trigger: GCCAGGCCTGGGTCTAGAATTCTTGCTGCTGCTTTGCAGAGTCAACAGCCCATCAGCCCATGTTTTAGAGGGGACACTTTGGTCCTCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp GTGCACTTGTCTAGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGCTCCCTCCCAGCCTTTaGGCCAAGAGAAGGCCAGGG +
Preference number: 2 (lower is better)
Translates to: VHLSRKRAVKLKSISGEELPPSL*AKRRPG
Trigger: CCCTGGCCTTCTCTTGGCTCAAAGGCTGGGAGGGAG...CTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCTAGACAAGTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp CCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGCTTCAAACCAACTCAAGCCTTCCCTGTaGAAGGACTCCTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: PQAYHLLRPEATPVASNQLKPSL*KDSFWV
Trigger: GACCCAGAAGGAGTCCTTGCACAGGGAAGGCTTGAG...TTGGTTTGAAGCCACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGGATGCGGAAGAAGGCTaGGTGGACGCACGGGGTTGG +
Preference number: 2 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQDAEEG*VDARGW
Trigger: CCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATC...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGAGGTGGGTCAGGGCGTaGACATGTAAACGGTGGGCC +
Preference number: 2 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQRWVRA*TCKRWA
Trigger: GGCCCACCGTTTACATGTGCACGCCCTGACCCACCT...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR GCA 90 bp GTGCACTTGTCTAGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGTGCCTGGGTACCCAATaGCCCTTCTTCCAGCTCCCA +
Preference number: 2 (lower is better)
Translates to: VHLSRKRAVKLKSISGEECLGTQ*PFFQLP
Trigger: TGGGAGCTGGAAGAAGGGGCATTGGGTACCCAGGCA...CTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCTAGACAAGTGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CCA 90 bp AGATCGGTCCCTGCCAGGCAAACTCTAGTGAAAATGGCCAGTGTCCAGCACCCCGAAAGTAATTTGACCTaGGAAAGACCTCCCTCATCC +
Preference number: 2 (lower is better)
Translates to: RSVPARQTLVKMASVQHPESNLT*ERPPSS
Trigger: GGATGAGGGAGGTCTTTCCCAGGTCAAATTACTTTC...GGGGTGCTGGACACTGGCCATTTTCACTAGAGTTTGCCTGGCAGGGACCGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR TCA 90 bp TTGGACCAGAGAGGCAAATCGAGCCTCAGGCAGAGGCCAAAGGAAAGTAATTTGACAAGGTGTGCCACATaGCACATTCATCTGCTGGAA +
Preference number: 2 (lower is better)
Translates to: LDQRGKSSLRQRPKESNLTRCAT*HIHLLE
Trigger: TTCCAGCAGATGAATGTGTCATGTGGCACACCTTGT...CAAATTACTTTCCTTTGGCCTCTGCCTGAGGCTCGATTTGCCTCTCTGGTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp CTCCAGCCTCCCTCCGGACCACCCGTCCGGTGGGGTTaGAGCCCCCAGGTGCGTTGGCGGCTTACCACCACC +
Preference number: 3 (lower is better)
Translates to: LQPPSGPPVRWG*SPQVRWRLTTT
Trigger: GGTGGTGGTAAGCCGCCAACGCACCTGGGGGCTGCAACCCCACCGGACGGGTGGTCCGGAGGGAGGCTGGAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCGGTGGACGCACGGGGTaGGTGTCAGGGCTGAGGTGG +
Preference number: 3 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSGGRTG*VSGLRW
Trigger: CCACCTCAGCCCTGACACCAACCCCGTGCGTCCACC...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR GCA 72 bp TCCTCCCAAGTCGGCGTGGGCAGGTGGGTCAGGGCGTaGACATGTAAACGGTGGGCCCGCAGCCCTGGGAGC +
Preference number: 3 (lower is better)
Translates to: SSQVGVGRWVRA*TCKRWARSPGS
Trigger: GCTCCCAGGGCTGCGGGCCCACCGTTTACATGTGCACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp AAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGGAGGCACCTGGCTCAGGATGGTGGACGCACGGGGTaGGTGTCAGGGCTGAGGTGG +
Preference number: 3 (lower is better)
Translates to: KRRCGEAHGLLRRHLAQDGGRTG*VSGLRW
Trigger: CCACCTCAGCCCTGACACCAACCCCGTGCGTCCACC...ATCCTGAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp CCTAGACACCCTCGGCCCACCCACAGCCTCTCCGGCTaGCGAAGGACGAGGGACGAGGGCAAGGCAGAGTTC +
Preference number: 3 (lower is better)
Translates to: PRHPRPTHSLSG*RRTRDEGKAEF
Trigger: GAACTCTGCCTTGCCCTCGTCCCTCGTCCTTCGGCAGCCGGAGAGGCTGTGGGTGGGCCGAGGGTGTCTAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp GCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTaGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCC +
Preference number: 3 (lower is better)
Translates to: AAGCVWMRKKAG*THGVGVRAEVA
Trigger: GGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CCA 72 bp TGCAGGCCACCATCCTCCCAAGTCGGCGTGGGCAGGTaGGTCAGGGCGTGCACATGTAAACGGTGGGCCCGC +
Preference number: 3 (lower is better)
Translates to: CRPPSSQVGVGR*VRACTCKRWAR
Trigger: GCGGGCCCACCGTTTACATGTGCACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGGATGGTGGCCTGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp AGGGCCGGACCTTGGGCTCCTACCTCTGGTCCAGGGTaGCCTCGCATTCCTGGTGATGGTCCTGGGGCCGCA +
Preference number: 3 (lower is better)
Translates to: RAGPWAPTSGPG*PRIPGDGPGAA
Trigger: TGCGGCCCCAGGACCATCACCAGGAATGCGAGGCCACCCTGGACCAGAGGTAGGAGCCCAAGGTCCGGCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp TCTGAAGCGAGCCGCATTGGGTGGCAAACGCCGCTGTaGAGAGGCGCACGGGCTGCTCAGGAGGCACCTGGC +
Preference number: 3 (lower is better)
Translates to: SEASRIGWQTPL*RGARAAQEAPG
Trigger: GCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp GCTGGCTCGGGCTGTGGGCCCACCGGCATGCTGGGCTaGGGTCCGCAAGCATACCATCTGCTAAGGCCAGAA +
Preference number: 3 (lower is better)
Translates to: AGSGCGPTGMLG*GPQAYHLLRPE
Trigger: TTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAGCATGCCGGTGGGCCCACAGCCCGAGCCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp AAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGGAGGCACCTGGCTCAGGATCCTCCCTCCCAGCCTTaGAGCCAAGAGAAGGCCAGG +
Preference number: 3 (lower is better)
Translates to: KRRCGEAHGLLRRHLAQDPPSQP*SQEKAR
Trigger: CCTGGCCTTCTCTTGGCTCAAAGGCTGGGAGGGAGG...ATCCTGAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp CGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTaGGGGTGGGAACCGAGGACCAAAGTGTCCCCTCTA +
Preference number: 3 (lower is better)
Translates to: RQRPSSGWRPAC*GWEPRTKVSPL
Trigger: TAGAGGGGACACTTTGGTCCTCGGTTCCCACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp GTCAGAGCCCAGCTGAGAAACTTCAGCCGTTGGTGCTaGGTCCCAGGTCGCCCGGGCCAGCAGCTGAGCAGG +
Preference number: 3 (lower is better)
Translates to: VRAQLRNFSRWC*VPGRPGQQLSR
Trigger: CCTGCTCAGCTGCTGGCCCGGGCGACCTGGGACTCAGCACCAACGGCTGAAGTTTCTCAGCTGGGCTCTGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp TCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTaGCTTCAGGCGGGGGATGGGTGCAGGACAGGGGAG +
Preference number: 3 (lower is better)
Translates to: SGQAEVAGNWSR*LQAGDGCRTGE
Trigger: CTCCCCTGTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CCA 72 bp TTGGCCGCTGCAGGCCACCATCCTCCCAAGTCGGCGTaGGCAGGTGGGTCAGGGCGTGCACATGTAAACGGT +
Preference number: 3 (lower is better)
Translates to: LAAAGHHPPKSA*AGGSGRAHVNG
Trigger: ACCGTTTACATGTGCACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGGATGGTGGCCTGCAGCGGCCAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGCCGGACAAGCAGAGGTaGCTGGCAATTGGAGCCGGT +
Preference number: 3 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLPDKQR*LAIGAG
Trigger: ACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGG...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR CAA 90 bp CCCCTGCGAGGCAGGCCCAGCAGAGACTCTTGCTCCCATCCAAGGGATGGGGAACTGAAGCGAGCCGCATaGGGTGGCAAACGCCGCTGT +
Preference number: 3 (lower is better)
Translates to: PLRGRPSRDSCSHPRDGELKRAA*GGKRRC
Trigger: ACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAG...TTCCCCATCCCTTGGATGGGAGCAAGAGTCTCTGCTGGGCCTGCCTCGCAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp GAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTaGGGTGGCCTCATGGCACAGAAGGAGGTGAGTGGT +
Preference number: 3 (lower is better)
Translates to: EGWVDARGWCQG*GGLMAQKEVSG
Trigger: ACCACTCACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR GCA 72 bp GTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTaGTTGCTGAGGGTGGGAACCGAGGACCAAAGTGTC +
Preference number: 3 (lower is better)
Translates to: VTTAEAFLGLEA*LLRVGTEDQSV
Trigger: GACACTTTGGTCCTCGGTTCCCACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp CTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTaGCCTCATGGCACAGAAGGAGGTGAGTGGTTCCCA +
Preference number: 3 (lower is better)
Translates to: LGGRTGLVSGLR*PHGTEGGEWFP
Trigger: TGGGAACCACTCACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR TCA 72 bp GAGGGACTATGGGCGTGCCCTCTGCATCAGAGCATCTaGAGCGAGCCGCATTGGGTGGCAAACGCCGCTGTG +
Preference number: 3 (lower is better)
Translates to: EGLWACPLHQSI*SEPHWVANAAV
Trigger: CACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAGATGCTCTGATGCAGAGGGCACGCCCATAGTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp TGCGAGGCTCTGCAGAGGGACTATGGGCGTGCCCTCTaGATCAGAGCATCTGAAGCGAGCCGCATTGGGTGG +
Preference number: 3 (lower is better)
Translates to: CEALQRDYGRAL*IRASEASRIGW
Trigger: CCACCCAATGCGGCTCGCTTCAGATGCTCTGATGCAGAGGGCACGCCCATAGTCCCTCTGCAGAGCCTCGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp CAGGGATGGCCTAGCAGAGGGGTGTCTGGGAAACGCTaGCAGAAATGTGGTGGCCCAGGGCCTCTGAGGACT +
Preference number: 3 (lower is better)
Translates to: QGWPSRGVSGKR*QKCGGPGPLRT
Trigger: AGTCCTCAGAGGCCCTGGGCCACCACATTTCTGGCAGCGTTTCCCAGACACCCCTCTGCTAGGCCATCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp GGGAACAGGGTGACTTTCCGCCTGGCGGGTGGGCAATaGAGGCTTTTTCCAGAGACAGCCTGCCTCTCCAGG +
Preference number: 3 (lower is better)
Translates to: GNRVTFRLAGGQ*RLFPETACLSR
Trigger: CCTGGAGAGGCAGGCTGTCTCTGGAAAAAGCCTCCATTGCCCACCCGCCAGGCGGAAAGTCACCCTGTTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp CACTGCAGGAACAGGGACAACAGGGAATGTGCAGACTaGGGAGGGCGACTCGGGGCTACCCCATCCTGGAGA +
Preference number: 3 (lower is better)
Translates to: HCRNRDNRECAD*GGRLGATPSWR
Trigger: TCTCCAGGATGGGGTAGCCCCGAGTCGCCCTCCCCAGTCTGCACATTCCCTGTTGTCCCTGTTCCTGCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp GATGGAGGAAGGCCGGACACACCGAAGGGGTCCACATaGTTAAGCCCAGACACCCTCAGCCACAGGTCAGGT +
Preference number: 3 (lower is better)
Translates to: DGGRPDTPKGST*LSPDTLSHRSG
Trigger: ACCTGACCTGTGGCTGAGGGTGTCTGGGCTTAAGCATGTGGACCCCTTCGGTGTGTCCGGCCTTCCTCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp TTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTaGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGG +
Preference number: 3 (lower is better)
Translates to: LSFSGQAEVAGN*SRWLQAGDGCR
Trigger: CCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CCA 72 bp GTGGCAGGCACCGCTGGAAGCCTCCGTGAAGACATGTaGGCCGCAGCCCCAGGTGTAGGGACTATATTGATG +
Preference number: 3 (lower is better)
Translates to: VAGTAGSLREDM*AAAPGVGTILM
Trigger: CATCAATATAGTCCCTACACCTGGGGCTGCGGCCCACATGTCTTCACGGAGGCTTCCAGCGGTGCCTGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp CGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTaGGCACCGTCCTCCACTTCTGTGAGGGGCTTTGAT +
Preference number: 3 (lower is better)
Translates to: RVGGSSSPNRYS*APSSTSVRGFD
Trigger: ATCAAAGCCCCTCACAGAAGTGGAGGACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATAGAGGTTGCTGGCAATaGGAGCCGGTGGCTTCAGGC +
Preference number: 3 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYRGCWQ*EPVASG
Trigger: GCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR TCA 72 bp TGCACATGTAAACGGTGGGCCCGCAGCCCTGGGAGCTaGGGACACACCAGGCAGCAGCAACAGTTAACAACC +
Preference number: 3 (lower is better)
Translates to: CTCKRWARSPGS*GHTRQQQQLTT
Trigger: GGTTGTTAACTGTTGCTGCTGCCTGGTGTGTCCTCAGCTCCCAGGGCTGCGGGCCCACCGTTTACATGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp GGGCTGTGCTGTGACTCAGACAGTCCCTCGGGCTGCTaGGGTCAAGCAAACTTAACCACAGCATCACCAGCC +
Preference number: 3 (lower is better)
Translates to: GLCCDSDSPSGC*GQANLTTASPA
Trigger: GGCTGGTGATGCTGTGGTTAAGTTTGCTTGACCCCAGCAGCCCGAGGGACTGTCTGAGTCACAGCACAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTaGTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGA +
Preference number: 3 (lower is better)
Translates to: PFRVVVFRTSRG*WQLEPVASGGG
Trigger: TCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR GCA 72 bp GTCTGGGAAGCGGCTTCTCACCTCAAGCCTTCCCTGTaGAAGGACTCCTTCTGGGTCCCAAAGAGCGCTCAA +
Preference number: 3 (lower is better)
Translates to: VWEAASHLKPSL*KDSFWVPKSAQ
Trigger: TTGAGCGCTCTTTGGGACCCAGAAGGAGTCCTTGCACAGGGAAGGCTTGAGGTGAGAAGCCGCTTCCCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTaGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGG +
Preference number: 3 (lower is better)
Translates to: FRVVVFRTSRGC*QLEPVASGGGW
Trigger: CCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CCA 72 bp TGTGGCTTCAAACCAAAAGGCCAAAGGGCAGGACGATaGAGGAAGGCCGGACACACCGAAGGGGTCCACATG +
Preference number: 3 (lower is better)
Translates to: CGFKPKGQRAGR*RKAGHTEGVHM
Trigger: CATGTGGACCCCTTCGGTGTGTCCGGCCTTCCTCCATCGTCCTGCCCTTTGGCCTTTTGGTTTGAAGCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp GGGGAACCAGGAAATGCTGCGGGAAGGGACAAGGTGTaGCACATGACACATTCATCTGCTGGAACTGACCCC +
Preference number: 3 (lower is better)
Translates to: GEPGNAAGRDKV*HMTHSSAGTDP
Trigger: GGGGTCAGTTCCAGCAGATGAATGTGTCATGTGGCACACCTTGTCCCTTCCCGCAGCATTTCCTGGTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp GCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTaGACCAGAGAGGCAAATCGAGCCTCAGGCAGAGGC +
Preference number: 3 (lower is better)
Translates to: ATGQVVQQCQSH*TREANRASGRG
Trigger: GCCTCTGCCTGAGGCTCGATTTGCCTCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp GGACAAGTCCAGGAAGCGTGTTTAATTGGCGTGACATaGACGACATACAGCAGGAGCTTGGGGAGGCTGGGG +
Preference number: 3 (lower is better)
Translates to: GQVQEACLIGVT*TTYSRSLGRLG
Trigger: CCCCAGCCTCCCCAAGCTCCTGCTGTATGTCGTCCATGTCACGCCAATTAAACACGCTTCCTGGACTTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp GCGCCGCGCTTCCTTAGCTCCCTTAAAATTAAATGCTaGAACCGCGCTGGGAACAGGGTGACTTTCCGCCTG +
Preference number: 3 (lower is better)
Translates to: APRFLSSLKIKC*NRAGNRVTFRL
Trigger: CAGGCGGAAAGTCACCCTGTTCCCAGCGCGGTTTCAGCATTTAATTTTAAGGGAGCTAAGGAAGCGCGGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp GTGGGAACCGAGGACCAAAGTGTCCCCTCTAAAACATaGGCTGATGGGCTGTTGACTCTGCAAAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: VGTEDQSVPSKT*ADGLLTLQSSS
Trigger: GCTGCTGCTTTGCAGAGTCAACAGCCCATCAGCCCATGTTTTAGAGGGGACACTTTGGTCCTCGGTTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp AGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGACTTTTCCATTTCGTGTaGTCGTTTTCCGGACAAGCA +
Preference number: 3 (lower is better)
Translates to: SGRNGGCLRGSQVLGLCRLFHFV*SFSGQA
Trigger: TGCTTGTCCGGAAAACGACAACACGAAATGGAAAAG...TCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR CAA 90 bp GGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTCTTTTCCATTTCGTGTaGTCGTTTTCCGGACAAGCA +
Preference number: 3 (lower is better)
Translates to: GTEAACEAAKSLVYAEGCLFHFV*SFSGQA
Trigger: TGCTTGTCCGGAAAACGACAACACGAAATGGAAAAG...ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR-3UTR CAA 90 bp CCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGCTTCAAACCAACAGCCACAGGTCAGGTaGTACAACAGTGTCAGTCCC +
Preference number: 3 (lower is better)
Translates to: PQAYHLLRPEATPVASNQQPQVR*YNSVSP
Trigger: GGGACTGACACTGTTGTACAACCTGACCTGTGGCTG...TTGGTTTGAAGCCACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp AGCCACAGGAAACTGAACCCCAGGCCTAGAGTGACATaGTGTCGGCATGGAAAAGGGCCTTCAAGACCAACC +
Preference number: 3 (lower is better)
Translates to: SHRKLNPRPRVT*CRHGKGPSRPT
Trigger: GGTTGGTCTTGAAGGCCCTTTTCCATGCCGACATCATGTCACTCTAGGCCTGGGGTTCAGTTTCCTGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp CAAGGGATGGGGAAATTGAGACCCAATGAGCAGAACTaGCTTGCGCAAAGTCCTGAAGGAAGCCAGCCACCG +
Preference number: 3 (lower is better)
Translates to: QGMGKLRPNEQN*LAQSPEGSQPP
Trigger: CGGTGGCTGGCTTCCTTCAGGACTTTGCGCAAGTCAGTTCTGCTCATTGGGTCTCAATTTCCCCATCCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp TTGGACCAGAGAGGCAAATCGAGCCTCAGGCAGAGGCCAAAGGAAAGTAATTTGGCCACGCAGGTGGTTTaGCTGCCAAAAGATGGGACG +
Preference number: 3 (lower is better)
Translates to: LDQRGKSSLRQRPKESNLATQVV*LPKDGT
Trigger: CGTCCCATCTTTTGGCAGCAAAACCACCTGCGTGGC...CAAATTACTTTCCTTTGGCCTCTGCCTGAGGCTCGATTTGCCTCTCTGGTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp TTAAAATTAAATGCTGAAACCGCGCTGGGAACAGGGTaGCTTTCCGCCTGGCGGGTGGGCAATGGAGGCTTT +
Preference number: 3 (lower is better)
Translates to: LKLNAETALGTG*LSAWRVGNGGF
Trigger: AAAGCCTCCATTGCCCACCCGCCAGGCGGAAAGTCACCCTGTTCCCAGCGCGGTTTCAGCATTTAATTTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp CAAACCGCTACTCTTGGGCACCGTCCTCCACTTCTGTaGGGGGCTTTGATGATGACACTCACATTTGGGTCT +
Preference number: 3 (lower is better)
Translates to: QTATLGHRPPLL*GALMMTLTFGS
Trigger: AGACCCAAATGTGAGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGGTGCCCAAGAGTAGCGGTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CCA 72 bp TGTTTTTGCAAGCATTATACCAATTTCTCCCCCAAGTaGCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAA +
Preference number: 3 (lower is better)
Translates to: CFCKHYTNFSPK*QAPGGRQQQSK
Trigger: TTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGCCACTTGGGGGAGAAATTGGTATAATGCTTGCAAAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGAGAGGTTGCTGGCAATaGGAGCCGGTGGCTTCAGGC +
Preference number: 3 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQRGCWQ*EPVASG
Trigger: GCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGGAGAAACTTCAGCCGTaGGTGCTGAGTCCCAGGTCG +
Preference number: 3 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQEKLQP*VLSPRS
Trigger: CGACCTGGGACTCAGCACCAACGGCTGAAGTTTCTC...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR-3UTR CAA 90 bp CCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGCTTCAAACCAAACTATATTGATGGGATaGCCTGGAACTCTTCTCTCC +
Preference number: 3 (lower is better)
Translates to: PQAYHLLRPEATPVASNQTILMG*PGTLLS
Trigger: GGAGAGAAGAGTTCCAGGCAATCCCATCAATATAGT...TTGGTTTGAAGCCACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR TCA 72 bp CCCAGGTGCACTTGTCTAGGAAACGGGCTGTCAAACTaGAAAGCATTTCAGGGGAAGAGATGTCAGTACAGA +
Preference number: 3 (lower is better)
Translates to: PRCTCLGNGLSN*KAFQGKRCQYR
Trigger: TCTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCTAGACAAGTGCACCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp ACGTACGCTTGCCTTGATGTTATTTTAAACGTGGCCTaGTTAGATCATGGAAAATCGGAACATTCTCCTAAG +
Preference number: 3 (lower is better)
Translates to: TYACLDVILNVA*LDHGKSEHSPK
Trigger: CTTAGGAGAATGTTCCGATTTTCCATGATCTAAGCAGGCCACGTTTAAAATAACATCAAGGCAAGCGTACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR GCA 72 bp CAAGCAGGAAAGGAAATAACCACAACCAGAAGACATTaGCTTTTGTTTGTTTGTTTTTGCAAGCATTATACC +
Preference number: 3 (lower is better)
Translates to: QAGKEITTTRRH*LLFVCFCKHYT
Trigger: GGTATAATGCTTGCAAAAACAAACAAACAAAAGGCAATGTCTTCTGGTTGTGGTTATTTCCTTTCCTGCTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AAGCACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGCCTGGGGCTGGTGCCTaGCCTGGCCCCAGTGCGAGG +
Preference number: 4 (lower is better)
Translates to: KHTRKRAGGTEAACEAAKPGAGA*PGPSAR
Trigger: CCTCGCACTGGGGCCAGGGCAGGCACCAGCCCCAGG...CTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTGCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGGTCAAGGGCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGCTGGCTCGGGCTGTaGGCCCACCGGCATGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSRAAGCVWMRKKAGWTHGWLGL*AHRHAG
Trigger: CCCAGCATGCCGGTGGGCCCACAGCCCGAGCCAGCC...GTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGCCCTTGACCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCACCCGTCCGGTGGGGTTaGAGCCCCCAGGTGCGTTGG +
Preference number: 4 (lower is better)
Translates to: RKKAGWTHGVGVRAEVASPVRWG*SPQVRW
Trigger: CCAACGCACCTGGGGGCTGCAACCCCACCGGACGGG...TGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTAGGCTGGGAGTGAGGTaGGCCTCCCTGGGGCCGGGA +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRRLGVR*ASLGPG
Trigger: TCCCGGCCCCAGGGAGGCCCACCTCACTCCCAGCCT...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CCCCTGCGAGGCAGGCCCAGCAGAGACTCTTGCTCCCATCCAAGGGATGGGGAAGGCTGGTGCCTGCCCTaGCCCCAGTGCGAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: PLRGRPSRDSCSHPRDGEGWCLP*PQCEAL
Trigger: CAGAGCCTCGCACTGGGGCCAGGGCAGGCACCAGCC...TTCCCCATCCCTTGGATGGGAGCAAGAGTCTCTGCTGGGCCTGCCTCGCAGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGGGACCACCCGTCCGGTaGGGTTGCAGCCCCCAGGTG +
Preference number: 4 (lower is better)
Translates to: CGCGRRLGGRTGLVSGLRGPPVR*GCSPQV
Trigger: CACCTGGGGGCTGCAACCCCACCGGACGGGTGGTCC...CCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACACCTGCCGCATCCAGCTaGCCACTGGGGCAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: RLGGRTGLVSGLRWPHGTPAASS*PLGQSL
Trigger: CAAGGACTGCCCCAGTGGGCAGCTGGATGCGGCAGG...TGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTGGGAGGAACGGAGGCTaGCTGCGAGGCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRGRNGG*LRGSQV
Trigger: GACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCC...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCGTTGCAGCCCCCAGGTaGGTTGGCGGCTTACCACCA +
Preference number: 4 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSVAAPR*VGGLPP
Trigger: TGGTGGTAAGCCGCCAACGCACCTGGGGGCTGCAAC...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACGTGGGCCCGCAGCCCTaGGAGCTGAGGACACACCAG +
Preference number: 4 (lower is better)
Translates to: RGCWQLEPVASGGGWVQDVGPQP*ELRTHQ
Trigger: CTGGTGTGTCCTCAGCTCCCAGGGCTGCGGGCCCAC...GTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGCCTCCCAAGTCGGCGTaGGCAGGTGGGTCAGGGCGT +
Preference number: 4 (lower is better)
Translates to: RTSRGCWQLEPVASGGGWPPKSA*AGGSGR
Trigger: ACGCCCTGACCCACCTGCCCACGCCGACTTGGGAGG...CCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATCCGCACCTGCCTCAGTaGCAGGCACCGCTGGAAGCC +
Preference number: 4 (lower is better)
Translates to: GRRLGGRTGLVSGLRWPHPHLPQ*QAPLEA
Trigger: GGCTTCCAGCGGTGCCTGCCACTGAGGCAGGTGCGG...ATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGGGGAGAGTGGCAAACGCCGCTGTaGAGAGGCGCACGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: WQLEPVASGGGWVQDRGEWQTPL*RGARAA
Trigger: AGCAGCCCGTGCGCCTCTCCACAGCGGCGTTTGCCA...CTCTCCCCTGTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGGACGCTGGGGTTGGCTGAATGCTCCAGCCAAGGGGAACAGCCACGCAGCCCCGCGAGCCGCATTGGGTaGCAAACGCCGCTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: GTLGLAECSSQGEQPRSPASRIG*QTPLWR
Trigger: TCTCCACAGCGGCGTTTGCCACCCAATGCGGCTCGC...GGGGCTGCGTGGCTGTTCCCCTTGGCTGGAGCATTCAGCCAACCCCAGCGTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGGTTGGTGTCAGGGCTaGGGTGGCCTCATGGCACAG +
Preference number: 4 (lower is better)
Translates to: AAGCVWMRKKAGWTHGVGGWCQG*GGLMAQ
Trigger: CTGTGCCATGAGGCCACCTCAGCCCTGACACCAACC...ACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp ACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCGCAGCCCTGGGAGCTaGGGACACACCAGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: TSRGCWQLEPVASGGGWVRSPGS*GHTRQQ
Trigger: CTGCTGCCTGGTGTGTCCTCAGCTCCCAGGGCTGCG...CACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCTCCCTCCCAGCCTTTaGGCCAAGAGAAGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRLPPSL*AKRRPG
Trigger: CCCTGGCCTTCTCTTGGCTCAAAGGCTGGGAGGGAG...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACAGAAGGAGGTCCTGCCGCATCCAGCTaGCCACTGGGGCAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GRTGLVSGLRWPHGTEGGPAASS*PLGQSL
Trigger: CAAGGACTGCCCCAGTGGGCAGCTGGATGCGGCAGG...ACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp AGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGATCCTGGGGCCGCACCTaGCTCAGTGGCAGGCACCGC +
Preference number: 4 (lower is better)
Translates to: SGRNGGCLRGSQVLGLCRSWGRT*LSGRHR
Trigger: GCGGTGCCTGCCACTGAGGCAGGTGCGGCCCCAGGA...TCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGATGCGGAAGAAGGCTaGGTGGACGCACGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLDAEEG*VDARGW
Trigger: CCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATC...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp CGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCAGCAGCCGGCTGTGTGTaGATGCGGAAGAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RKKAGWTHGVGVRAEVASAAGCV*MRKKAG
Trigger: CCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC...TGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp AGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACAGCAGCCGGCTGTGTGTaGATGCGGAAGAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RLGGRTGLVSGLRWPHGTAAGCV*MRKKAG
Trigger: CCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC...TGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp ACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGGGAGCTTGGGGAGGCTaGGGCATGCTACACGGCCCC +
Preference number: 4 (lower is better)
Translates to: TSRGCWQLEPVASGGGWVGAWGG*GMLHGP
Trigger: GGGGCCGTGTAGCATGCCCCAGCCTCCCCAAGCTCC...CACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 72 bp ACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTaGCTGAGGGTGGGAACCGAGGACCAAAGTGTCCCC +
Preference number: 4 (lower is better)
Translates to: TTAEAFLGLEAC*LRVGTEDQSVP
Trigger: GGGGACACTTTGGTCCTCGGTTCCCACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp CTGGGCTGCGGTCCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGCCTCGCATTCCTGGTaGTGGTCCTGGGGCCGCACC +
Preference number: 4 (lower is better)
Translates to: LGCGPQAYHLLRPEATPVASHSW*WSWGRT
Trigger: GGTGCGGCCCCAGGACCATCACCAGGAATGCGAGGC...CACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp CGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGACGCTGGGGTTGGCTaGATGCTCCAGCCAAGGGGA +
Preference number: 4 (lower is better)
Translates to: RTSRGCWQLEPVASGGGWDAGVG*MLQPRG
Trigger: TCCCCTTGGCTGGAGCATTCAGCCAACCCCAGCGTC...CCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGATTCAGCCGTTGGTGCTaGGTCCCAGGTCGCCCGGGC +
Preference number: 4 (lower is better)
Translates to: SGRNGGCLRGSQVLGLCRFSRWC*VPGRPG
Trigger: GCCCGGGCGACCTGGGACTCAGCACCAACGGCTGAA...TCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AAGCACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTGGCTTCTTGGCCGCTaGAGGCCACCATCCTCCCAA +
Preference number: 4 (lower is better)
Translates to: KHTRKRAGGTEAACEAAKWLLGR*RPPSSQ
Trigger: TTGGGAGGATGGTGGCCTGCAGCGGCCAAGAAGCCA...CTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATCGGAAGAAGGCTGGGTaGACGCACGGGGTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: GRRLGGRTGLVSGLRWPHRKKAG*THGVGV
Trigger: GACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG...ATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGGATGCGGAAGAAGGCTaGGTGGACGCACGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: AVCGCGRRLGGRTGLVSGDAEEG*VDARGW
Trigger: CCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATC...CCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GGGTCAAGGGCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACCTCCGTGAAGACATGTaGGCCGCAGCCCCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: GSRAAGCVWMRKKAGWTHLREDM*AAAPGV
Trigger: TACACCTGGGGCTGCGGCCCACATGTCTTCACGGAG...GTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGCCCTTGACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGCAAGGGCCGGACCTTaGGCTCCTACCTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: GRRLGGRTGLVSGLRWPHARAGP*APTSGP
Trigger: TGGACCAGAGGTAGGAGCCCAAGGTCCGGCCCTTGC...ATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGGGGAGAGCTGCCAGAAATGTGGTaGCCCAGGGCCTCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: WQLEPVASGGGWVQDRGELPEMW*PRASED
Trigger: GTCCTCAGAGGCCCTGGGCCACCACATTTCTGGCAG...CTCTCCCCTGTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGGACGCTGGGGTTGGCTGAATGCTCCAGCCAAGGGGAACAGCCACGCAGCCCCCATACAGCAGGAGCTTaGGGAGGCTGGGGCATGCTA +
Preference number: 4 (lower is better)
Translates to: GTLGLAECSSQGEQPRSPHTAGA*GGWGML
Trigger: TAGCATGCCCCAGCCTCCCCAAGCTCCTGCTGTATG...GGGGCTGCGTGGCTGTTCCCCTTGGCTGGAGCATTCAGCCAACCCCAGCGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 72 bp GGAGGCTGCCCACAATCAAAGAGCAAGGGCCGGACCTaGGGCTCCTACCTCTGGTCCAGGGTGGCCTCGCAT +
Preference number: 4 (lower is better)
Translates to: GGCPQSKSKGRT*GSYLWSRVASH
Trigger: ATGCGAGGCCACCCTGGACCAGAGGTAGGAGCCCAAGGTCCGGCCCTTGCTCTTTGATTGTGGGCAGCCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTATCCAGGGTTCCCCGTaGGGTCACCGACAGCGCCTG +
Preference number: 4 (lower is better)
Translates to: GTEAACEAAKSLVYAEGCIQGSP*GHRQRL
Trigger: CAGGCGCTGTCGGTGACCTCACGGGGAACCCTGGAT...ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp AGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACATTCATCTGCTGGAACTaGCCCCACACACCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: RLGGRTGLVSGLRWPHGTFICWN*PHTPAA
Trigger: GGCTGCTGGTGTGTGGGGTCAGTTCCAGCAGATGAA...TGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCGCGCCCTGTTTTCCATaGTGCGGCAAACACCAAAGC +
Preference number: 4 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSAPCFP*CGKHQS
Trigger: GCTTTGGTGTTTGCCGCAGCATGGAAAACAGGGCGC...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTTGCCTGGGTACCCAATaGCCCTTCTTCCAGCTCCCA +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRCLGTQ*PFFQLP
Trigger: TGGGAGCTGGAAGAAGGGGCATTGGGTACCCAGGCA...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCGAGAGGGCAGGAGGCTaGCCACAATCAAAGAGCAAG +
Preference number: 4 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSERAGG*PQSKSK
Trigger: CTTGCTCTTTGATTGTGGGCAGCCTCCTGCCCTCTC...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp TGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGACCGGCATGCTGGGCTaGGGTCCGCAAGCATACCAT +
Preference number: 4 (lower is better)
Translates to: CGCGRRLGGRTGLVSGLRTGMLG*GPQAYH
Trigger: ATGGTATGCTTGCGGACCGCAGCCCAGCATGCCGGT...CCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGCCTGGCTCAGGATTCTaGGGCATCACTGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLPGSGF*GITAAR
Trigger: TCTGGCTGCAGTGATGCCGCAGAATCCTGAGCCAGG...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCACCCAGCAGAGACTCTTaGTCCCATCCAAGGGATGGG +
Preference number: 4 (lower is better)
Translates to: RKKAGWTHGVGVRAEVASPSRDS*SHPRDG
Trigger: CCCATCCCTTGGATGGGAGCAAGAGTCTCTGCTGGG...TGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGGCCTTGGAACCCTCCTaGAACTCCTGCAGGGTCAGC +
Preference number: 4 (lower is better)
Translates to: CGCGRRLGGRTGLVSGLRALEPS*NSCRVS
Trigger: GCTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGC...CCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTACAGCGCCTGCACAATaGACGGGTCTGCCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRTAPAQ*TGLPWN
Trigger: GTTCCAAGGCAGACCCGTCCATTGTGCAGGCGCTGT...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGGCAATTGGAGCCGGTaGCTTCAGGCGGGGGATGGG +
Preference number: 4 (lower is better)
Translates to: FSGQAEVAGNWSRWLQAGGNWSR*LQAGDG
Trigger: CCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCC...CCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAA
63% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGGAGGTTGCTGGCAATTaGAGCCGGTGGCTTCAGGCG +
Preference number: 4 (lower is better)
Translates to: AVCGCGRRLGGRTGLVSGEVAGN*SRWLQA
Trigger: CGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTC...CCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp CGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGCTCAGGAGGCACCTaGCTCAGGATTCTGCGGCAT +
Preference number: 4 (lower is better)
Translates to: RKKAGWTHGVGVRAEVASCSGGT*LRILRH
Trigger: ATGCCGCAGAATCCTGAGCCAGGTGCCTCCTGAGCA...TGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGGGGAGAGTTTCCGCCTGGCGGGTaGGCAATGGAGGCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: WQLEPVASGGGWVQDRGEFPPGG*AMEAFS
Trigger: GGAAAAAGCCTCCATTGCCCACCCGCCAGGCGGAAA...CTCTCCCCTGTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATTGGAGGCCTGCTTGCTaGGGGTGGGAACCGAGGACC +
Preference number: 4 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYWRPAC*GWEPRT
Trigger: GGTCCTCGGTTCCCACCCTCAGCAAGCAGGCCTCCA...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp TGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGGATCTTCTGGAAGCCTaGCGCATCCAGCTGCCCACT +
Preference number: 4 (lower is better)
Translates to: CGCGRRLGGRTGLVSGLRDLLEA*RIQLPT
Trigger: AGTGGGCAGCTGGATGCGGCAGGCTTCCAGAAGATC...CCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp CCCCTGCGAGGCAGGCCCAGCAGAGACTCTTGCTCCCATCCAAGGGATGGGGAACGGACAAGCAGAGGTTaGTGGCAATTGGAGCCGGTG +
Preference number: 4 (lower is better)
Translates to: PLRGRPSRDSCSHPRDGERTSRG*WQLEPV
Trigger: CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCG...TTCCCCATCCCTTGGATGGGAGCAAGAGTCTCTGCTGGGCCTGCCTCGCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTCTGGGGTTGGCTGAATaGTCCAGCCAAGGGGAACAG +
Preference number: 4 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGLGLAE*SSQGEQ
Trigger: CTGTTCCCCTTGGCTGGAGCATTCAGCCAACCCCAG...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGATCGGTCCCTGCCAGGCAAACTCTAGTGAAAATGGCCAGTGTCCAGCACCCCGAGAGGCGCACGGGCTaGTCAGGAGGCACCTGGCTC +
Preference number: 4 (lower is better)
Translates to: RSVPARQTLVKMASVQHPERRTG*SGGTWL
Trigger: GAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTC...GGGGTGCTGGACACTGGCCATTTTCACTAGAGTTTGCCTGGCAGGGACCGATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGCAGAGTTCTCTGAGGTCCCCAGGCCTTCACCCCATCTGTCAGTCTGTGTCTGTCTCACCAGGCCCCTaGGAGGCAGGCCCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: RQSSLRSPGLHPICQSVSVSPGP*EAGPAE
Trigger: CTCTGCTGGGCCTGCCTCGCAGGGGCCTGGTGAGAC...AGACACAGACTGACAGATGGGGTGAAGGCCTGGGGACCTCAGAGAACTCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACAGAAGGAGGTACAGCGCCTGCACAATaGACGGGTCTGCCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: GRTGLVSGLRWPHGTEGGTAPAQ*TGLPWN
Trigger: GTTCCAAGGCAGACCCGTCCATTGTGCAGGCGCTGT...ACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp ATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCACAAGCAGAGGTTGCTaGCAATTGGAGCCGGTGGCT +
Preference number: 4 (lower is better)
Translates to: MRKKAGWTHGVGVRAEVATSRGC*QLEPVA
Trigger: AGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGT...GGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATCAGGGAAAAGGGGTTTaGCAGGAGGCATTCGGGCTG +
Preference number: 4 (lower is better)
Translates to: GRRLGGRTGLVSGLRWPHQGKGV*QEAFGL
Trigger: CAGCCCGAATGCCTCCTGCCAAACCCCTTTTCCCTG...ATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTTCTCCTGACTCTGCCTaGGTACCCAATGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRSPDSA*VPNAPS
Trigger: AGAAGGGGCATTGGGTACCCAGGCAGAGTCAGGAGA...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACTCTGCAGAGGGACTATaGGCGTGCCCTCTGCATCAG +
Preference number: 4 (lower is better)
Translates to: RGCWQLEPVASGGGWVQDSAEGL*ACPLHQ
Trigger: CTGATGCAGAGGGCACGCCCATAGTCCCTCTGCAGA...GTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CCTCAAGCCTTCCCTGTGCAAGGACTCCTTCTGGGTCCCAAAGAGCGCTCAAGGAGCCCCCAGGTGCGTTaGCGGCTTACCACCACCAGG +
Preference number: 4 (lower is better)
Translates to: PQAFPVQGLLLGPKERSRSPQVR*RLTTTR
Trigger: CCTGGTGGTGGTAAGCCGCCAACGCACCTGGGGGCT...CCTTGAGCGCTCTTTGGGACCCAGAAGGAGTCCTTGCACAGGGAAGGCTTGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGAGGGAATGTGCAGACTaGGGAGGGCGACTCGGGGCT +
Preference number: 4 (lower is better)
Translates to: REREERRLPARQPSPWFMRECAD*GGRLGA
Trigger: AGCCCCGAGTCGCCCTCCCCAGTCTGCACATTCCCT...CATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCAATTTCTCCCCCAAGTaGCAGGCTCCGGGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: KVLKEASHRVRLGVRWASNFSPK*QAPGGR
Trigger: CCTCCCACCCGGAGCCTGCCACTTGGGGGAGAAATT...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGGGGAGAGCCATCTCTCAATCCCTaGGGACGGGATGTCAGGGAA +
Preference number: 4 (lower is better)
Translates to: WQLEPVASGGGWVQDRGEPSLNP*GRDVRE
Trigger: TTCCCTGACATCCCGTCCCCAGGGATTGAGAGATGG...CTCTCCCCTGTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000630865.1
CDS-3UTR TCA 90 bp GGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACAGAAGGAGGTAAAGACCACCTCTCCTaGCTCTGCCTGGGTACCCAA +
Preference number: 4 (lower is better)
Translates to: GRTGLVSGLRWPHGTEGGKDHLS*LCLGTQ
Trigger: TTGGGTACCCAGGCAGAGTCAGGAGAGGTGGTCTTT...ACCTCCTTCTGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGATAGGGGCTGTGCTGTaGCTCAGACAGTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: REREERRLPARQPSPWFMIGAVL*LRQSLG
Trigger: CCCGAGGGACTGTCTGAGTCACAGCACAGCCCCTAT...CATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp ATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCCGTCCTCCACTTCTGTaGGGGGCTTTGATGATGACA +
Preference number: 4 (lower is better)
Translates to: MRKKAGWTHGVGVRAEVARPPLL*GALMMT
Trigger: TGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACG...GGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGAGGTGGGTCAGGGCGTaGACATGTAAACGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: REREERRLPARQPSPWFMRWVRA*TCKRWA
Trigger: GGCCCACCGTTTACATGTGCACGCCCTGACCCACCT...CATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTAGGGGAGAACAAGGATaGGGGGACAGAGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: GTEAACEAAKSLVYAEGCRGEQG*GDRGSR
Trigger: CCTGCTGCCTCTGTCCCCGCATCCTTGTTCTCCCCT...ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCAGCAGAGATCGGTCCCTaGCAGGCAAACTCTAGTGAA +
Preference number: 4 (lower is better)
Translates to: RKKAGWTHGVGVRAEVASAEIGP*QANSSE
Trigger: TTCACTAGAGTTTGCCTGGCAGGGACCGATCTCTGC...TGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCGAGGGACTATGGGCGTaGCCTCTGCATCAGAGCATC +
Preference number: 4 (lower is better)
Translates to: KVLKEASHRVRLGVRWASEGLWA*PLHQSI
Trigger: GATGCTCTGATGCAGAGGGCACGCCCATAGTCCCTC...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CAAAAGCACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCATGTGGCAAACTTGGTaGGGTCTCCGAACGGGAAGA +
Preference number: 4 (lower is better)
Translates to: QKHTRKRAGGTEAACEAAMWQTW*GLRTGR
Trigger: TCTTCCCGTTCGGAGACCCCACCAAGTTTGCCACAT...GGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTGCTTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp AGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGTGTTCTCCTCCTCTaGGAGCTCCACGGTATTCCC +
Preference number: 4 (lower is better)
Translates to: RGCWQLEPVASGGGWVQDSVLLL*ELHGIP
Trigger: GGGAATACCGTGGAGCTCCCAGAGGAGGAGAACACT...GTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp TTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGCATCCAGCTCCAGCCTaGGACTATACCAGCCCGTCG +
Preference number: 4 (lower is better)
Translates to: FSGQAEVAGNWSRWLQAGHPAPA*DYTSPS
Trigger: CGACGGGCTGGTATAGTCCCAGGCTGGAGCTGGATG...CCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp AGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGTCCCTCGGGCTGCTaGGGTCAAGCAAACTTAACC +
Preference number: 4 (lower is better)
Translates to: RGCWQLEPVASGGGWVQDSPSGC*GQANLT
Trigger: GGTTAAGTTTGCTTGACCCCAGCAGCCCGAGGGACT...GTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CTGAGGTCCCCAGGCCTTCACCCCATCTGTCAGTCTGTGTCTTCTAGGACAGAAGGCCCACCGGCATGCTaGGCTGCGGTCCGCAAGCAT +
Preference number: 4 (lower is better)
Translates to: LRSPGLHPICQSVSSRTEGPPAC*AAVRKH
Trigger: ATGCTTGCGGACCGCAGCCCAGCATGCCGGTGGGCC...TTCTGTCCTAGAAGACACAGACTGACAGATGGGGTGAAGGCCTGGGGACCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCCCGGCAGCTCTGGGCTaGCTCGGGCTGTGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: SISCCRFPDKQRLLAIGAPAALG*LGLWAH
Trigger: GTGGGCCCACAGCCCGAGCCAGCCCAGAGCTGCCGG...GGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 72 bp GTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATaGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: VVVFRTSRGCWQ*EPVASGGGWVQ
Trigger: CTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp GCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTAGTCATGAACTATCTTaGAATCCCCTCCCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: AAGCVWMRKKAGWTHGVGSHELS*NPLPSP
Trigger: TGGGCTGGGGAGGGGATTTCAAGATAGTTCATGACT...ACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCAGCGGGAGAGAGTCATaGACTATCTTGAAATCCCCT +
Preference number: 4 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSSGRES*TILKSP
Trigger: AGGGGATTTCAAGATAGTTCATGACTCTCTCCCGCT...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AAGCACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGAAGCCTTTGTACCACTaGTGGACCTCCTTCTCGGTA +
Preference number: 4 (lower is better)
Translates to: KHTRKRAGGTEAACEAAKKPLYH*WTSFSV
Trigger: TACCGAGAAGGAGGTCCAGCAGTGGTACAAAGGCTT...CTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp TTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGGACAACAGGGAATGTaGAGACTGGGGAGGGCGACT +
Preference number: 4 (lower is better)
Translates to: FSGQAEVAGNWSRWLQAGGQQGM*RLGRAT
Trigger: AGTCGCCCTCCCCAGTCTGCACATTCCCTGTTGTCC...CCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTGCTTCAACTTGCTGTTaGATTTCCCCATCCTCGGCG +
Preference number: 4 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGASTCC*ISPSSA
Trigger: CGCCGAGGATGGGGAAATCCAACAGCAAGTTGAAGC...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGGCAGAGTTCTCTGAGGTCCCCAGGCCTTCACCCCATCTGTCAGTCTGTGTCTCGGAAGAAGGCTGGGTaGACGCACGGGGTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: RQSSLRSPGLHPICQSVSRKKAG*THGVGV
Trigger: GACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCG...AGACACAGACTGACAGATGGGGTGAAGGCCTGGGGACCTCAGAGAACTCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCACAAGCAGAGGTTGCTaGCAATTGGAGCCGGTGGCT +
Preference number: 4 (lower is better)
Translates to: KVLKEASHRVRLGVRWASTSRGC*QLEPVA
Trigger: AGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGT...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGTGCAAGGACTCCTTCTaGGTCCCAAAGAGCGCTCAA +
Preference number: 4 (lower is better)
Translates to: AVCGCGRRLGGRTGLVSGCKDSF*VPKSAQ
Trigger: TTGAGCGCTCTTTGGGACCCAGAAGGAGTCCTTGCA...CCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACAGGGGAGAGATCCACCCTTCAAAGTaGCCTGTGAAGGTGGAACCA +
Preference number: 4 (lower is better)
Translates to: WQLEPVASGGGWVQDRGEIHPSK*PVKVEP
Trigger: TGGTTCCACCTTCACAGGCCACTTTGAAGGGTGGAT...CTCTCCCCTGTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGCTTGCTATCCAGGGATaGCCTAGCAGAGGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: REERRLPARQPSPWFMQRLAIQG*PSRGVS
Trigger: AGACACCCCTCTGCTAGGCCATCCCTGGATAGCAAG...CCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGCCAAACCGCTACTCTTaGGCACCGTCCTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: REERRLPARQPSPWFMQRPNRYS*APSSTS
Trigger: AGAAGTGGAGGACGGTGCCCAAGAGTAGCGGTTTGG...CCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTCCGACAGCGCCTGGATaGACTCGGAGAACTCAATTC +
Preference number: 4 (lower is better)
Translates to: GTEAACEAAKSLVYAEGCPTAPG*TRRTQF
Trigger: GAATTGAGTTCTCCGAGTTCATCCAGGCGCTGTCGG...ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGCATCTCATTCCTGGTaGTGTAGCCATCATTGTCCA +
Preference number: 4 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLASHSW*CSHHCP
Trigger: TGGACAATGATGGCTACATCACCAGGAATGAGATGC...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp CCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGCTTCAAACCAACGCTGGAAGCCTCCGTaGAGACATGTGGGCCGCAGC +
Preference number: 4 (lower is better)
Translates to: PQAYHLLRPEATPVASNQRWKPP*RHVGRS
Trigger: GCTGCGGCCCACATGTCTTCACGGAGGCTTCCAGCG...TTGGTTTGAAGCCACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGCACAACAAGGTGTGCCACATaGCACATTCATCTGCTGGAA +
Preference number: 4 (lower is better)
Translates to: RLGGRTGLVSGLRWPHGTTRCAT*HIHLLE
Trigger: TTCCAGCAGATGAATGTGTCATGTGGCACACCTTGT...TGTGCCATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATAGAAGGGGCAGAGCCTaGGCCTGGATGCTAAGATGC +
Preference number: 4 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYRRGRA*AWMLRC
Trigger: GCATCTTAGCATCCAGGCTCAGGCTCTGCCCCTTCT...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGGGAGGAACGGAGGCTaGCTGCGAGGCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRGRNGG*LRGSQV
Trigger: GACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCC...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTGCCTGGATGCTAAGATaGCAAGACAGAAGATGGGAC +
Preference number: 4 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGAWMLR*QDRRWD
Trigger: GTCCCATCTTCTGTCTTGGCATCTTAGCATCCAGGC...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTCAGTGTCAGTCCCATTaGACCAGAGAGGCAAATCGA +
Preference number: 4 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGQCQSH*TREANR
Trigger: TCGATTTGCCTCTCTGGTCCAATGGGACTGACACTG...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TTGGACCAGAGAGGCAAATCGAGCCTCAGGCAGAGGCCAAAGGAAAGTAATTTGCCCTTCCGGCAGCTCTaGGCTGGCTCGGGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: LDQRGKSSLRQRPKESNLPFRQL*AGSGCG
Trigger: CCCACAGCCCGAGCCAGCCCAGAGCTGCCGGAAGGG...CAAATTACTTTCCTTTGGCCTCTGCCTGAGGCTCGATTTGCCTCTCTGGTCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGTTAATTGGCGTGACATaGACGACATACAGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLLIGVT*TTYSRS
Trigger: GCTCCTGCTGTATGTCGTCCATGTCACGCCAATTAA...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp CTGGGCTGCGGTCCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGAGGCCTAGAGTGACATaGTGTCGGCATGGAAAAGGG +
Preference number: 4 (lower is better)
Translates to: LGCGPQAYHLLRPEATPVRPRVT*CRHGKG
Trigger: CCCTTTTCCATGCCGACATCATGTCACTCTAGGCCT...CACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATACCCCAGGCCTAGAGTaGCATGATGTCGGCATGGAA +
Preference number: 4 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYTPGLE*HDVGME
Trigger: TTCCATGCCGACATCATGTCACTCTAGGCCTGGGGT...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GCAGGCTCCGGGTGGGAGGCAGCAGCAGTCCAAACCGCTACTCTTGGGCACCGTCACGTACGCTTGCCTTaGTGTTATTTTAAACGTGGC +
Preference number: 4 (lower is better)
Translates to: AGSGWEAAAVQTATLGHRHVRLP*CYFKRG
Trigger: GCCACGTTTAAAATAACATCAAGGCAAGCGTACGTG...ACGGTGCCCAAGAGTAGCGGTTTGGACTGCTGCTGCCTCCCACCCGGAGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGAACGGGCTGTCAAACTaGAAAGCATTTCAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: AVCGCGRRLGGRTGLVSGNGLSN*KAFQGK
Trigger: CTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTT...CCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTACACAATGGACGGGTCTaGCTTGGAACCCTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: ERRLPARQPSPWFMQRAVHNGRV*LGTLLE
Trigger: TTCCAGGAGGGTTCCAAGGCAGACCCGTCCATTGTG...TACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp GGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTCCACGCAGGTGGTTTTaGTGCCAAAAGATGGGACGA +
Preference number: 4 (lower is better)
Translates to: GTEAACEAAKSLVYAEGCPRRWF*CQKMGR
Trigger: TCGTCCCATCTTTTGGCAGCAAAACCACCTGCGTGG...ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGCCCAGTGCGAGGCTCTaGAGAGGGACTATGGGCGTG +
Preference number: 4 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVPSARL*RGTMGV
Trigger: CACGCCCATAGTCCCTCTGCAGAGCCTCGCACTGGG...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGGCCGGGAGCCACTaGAGGAACAGGGACAACAGG +
Preference number: 4 (lower is better)
Translates to: SISCCRFPDKQRLLAIGAGAGSH*RNRDNR
Trigger: CCTGTTGTCCCTGTTCCTGCAGTGGCTCCCGGCCCC...GGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGTCACCGACAGCGCCTaGATGAACTCGGAGAACTCA +
Preference number: 4 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYVTDSA*MNSENS
Trigger: TGAGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGAC...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCCACCATCTGGTAAATaGCATCCACAATGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: AVCGCGRRLGGRTGLVSGPPSGK*HPQCPA
Trigger: TGCTGGACATTGTGGATGCCATTTACCAGATGGTGG...CCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp ACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGAGGCAGCCAAGTCCTTaGTTTATGCAGAGGGCTGTA +
Preference number: 4 (lower is better)
Translates to: TSRGCWQLEPVASGGGWVRQPSP*FMQRAV
Trigger: TACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCT...CACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp ACACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTGGACCAGAGGGGGACGCTGGGGTTaGCTGAATGCTCCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: TPSATGQVVQQCQSHWTRGGRWG*LNAPAK
Trigger: CTTGGCTGGAGCATTCAGCCAACCCCAGCGTCCCCC...TCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGGCCTGCTTAGATCATaGAAAATCGGAACATTCTCC +
Preference number: 4 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLGLLRS*KIGTFS
Trigger: GGAGAATGTTCCGATTTTCCATGATCTAAGCAGGCC...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 72 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTaGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGG +
Preference number: 4 (lower is better)
Translates to: SISCCRFPDKQR*LAIGAGGFRRG
Trigger: CCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp GGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTAAGCCTTTGTACCACTaGTGGACCTCCTTCTCGGTA +
Preference number: 4 (lower is better)
Translates to: GTEAACEAAKSLVYAEGCKPLYH*WTSFSV
Trigger: TACCGAGAAGGAGGTCCAGCAGTGGTACAAAGGCTT...ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp ACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTGGACCAGAGAGCCTTGGAACCCTCCTaGAACTCCTGCAGGGTCAGC +
Preference number: 4 (lower is better)
Translates to: TLSHRSGCTTVSVPLDQRALEPS*NSCRVS
Trigger: GCTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGC...TCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGCATCCAGCTCCAGCCTaGGACTATACCAGCCCGTCG +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRHPAPA*DYTSPS
Trigger: CGACGGGCTGGTATAGTCCCAGGCTGGAGCTGGATG...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp CTTAGGCGCCCTGTTTTCCATGCTGCGGCAAACACCAAAGCAAGAGTTGAGAAAGGCAATTGGAGCCGGTaGCTTCAGGCGGGGGATGGG +
Preference number: 4 (lower is better)
Translates to: LRRPVFHAAANTKARVEKGNWSR*LQAGDG
Trigger: CCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCC...TTTCTCAACTCTTGCTTTGGTGTTTGCCGCAGCATGGAAAACAGGGCGCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGAGGTTGCTGGCAATTaGAGCCGGTGGCTTCAGGCG +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSREVAGN*SRWLQA
Trigger: CGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTC...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp AGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGGTCGGCGTGGGCAGGTaGGTCAGGGCGTGCACATGT +
Preference number: 4 (lower is better)
Translates to: RAVAFSISCCRFPDKQRLVGVGR*VRACTC
Trigger: ACATGTGCACGCCCTGACCCACCTGCCCACGCCGAC...CAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGTTGGGCTCCTACCTCTaGTCCAGGGTGGCCTCGCAT +
Preference number: 4 (lower is better)
Translates to: PFRVVVFRTSRGCWQLEPLGSYL*SRVASH
Trigger: ATGCGAGGCCACCCTGGACCAGAGGTAGGAGCCCAA...CGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTGGACCAGAGACTGGCCCTGACAGTCTaGGAAGCGGCTTCTCACCTC +
Preference number: 4 (lower is better)
Translates to: TLSHRSGCTTVSVPLDQRLALTV*EAASHL
Trigger: GAGGTGAGAAGCCGCTTCCCAGACTGTCAGGGCCAG...TCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGAGCAGGGAGCCGACTaGCAGGGGCCTCAAAGAATC +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSREQGAD*QGPQRI
Trigger: GATTCTTTGAGGCCCCTGCCAGTCGGCTCCCTGCTC...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTGGACCAGAGACAAAGGGCAGGACGATaGAGGAAGGCCGGACACACC +
Preference number: 4 (lower is better)
Translates to: TLSHRSGCTTVSVPLDQRQRAGR*RKAGHT
Trigger: GGTGTGTCCGGCCTTCCTCCATCGTCCTGCCCTTTG...TCTCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGACAGAAGCCACACCTGTaGCTTCAAACCAAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: SGRNGGCLRGSQVLGLCRQKPHL*LQTKRP
Trigger: TGGCCTTTTGGTTTGAAGCCACAGGTGTGGCTTCTG...TCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGACCTTTGTACCACTGCTaGACCTCCTTCTCGGTAATC +
Preference number: 4 (lower is better)
Translates to: SGRNGGCLRGSQVLGLCRPLYHC*TSFSVI
Trigger: GATTACCGAGAAGGAGGTCCAGCAGTGGTACAAAGG...TCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000630865.1
CDS-3UTR TCA 90 bp GAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGGTTGGTGTCAGGGCTaGGGTGGCCTCATGGCACAG +
Preference number: 4 (lower is better)
Translates to: EGCSLFHFVLSFSGQAEVGWCQG*GGLMAQ
Trigger: CTGTGCCATGAGGCCACCTCAGCCCTGACACCAACC...AACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGATCTTCTGGAAGCCTaGCGCATCCAGCTGCCCACT +
Preference number: 4 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVDLLEA*RIQLPT
Trigger: AGTGGGCAGCTGGATGCGGCAGGCTTCCAGAAGATC...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGGGGGAACCAGGAAATaGTGCGGGAAGGGACAAGGT +
Preference number: 4 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVGGTRK*CGKGQG
Trigger: ACCTTGTCCCTTCCCGCAGCATTTCCTGGTTCCCCC...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGACCGTGGGGCCAGCGTaGAGTCCTAGGGGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQTVGPA*SPRGLP
Trigger: TGGCAGCCCCCTAGGACTGCACGCTGGCCCCACGGT...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GGGACGCTGGGGTTGGCTGAATGCTCCAGCCAAGGGGAACAGCCACGCAGCCCCATTTTAAACGTGGCCTaGTTAGATCATGGAAAATCG +
Preference number: 4 (lower is better)
Translates to: GTLGLAECSSQGEQPRSPILNVA*LDHGKS
Trigger: CGATTTTCCATGATCTAAGCAGGCCACGTTTAAAAT...GGGGCTGCGTGGCTGTTCCCCTTGGCTGGAGCATTCAGCCAACCCCAGCGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGACCTCTGGTCCAGGGTaGCCTCGCATTCCTGGTGAT +
Preference number: 4 (lower is better)
Translates to: PFRVVVFRTSRGCWQLEPTSGPG*PRIPGD
Trigger: ATCACCAGGAATGCGAGGCCACCCTGGACCAGAGGT...CGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGAGCGCTCAAGGGTCTaGGGGGAACCAGGAAATGCT +
Preference number: 4 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVERSRV*GEPGNA
Trigger: AGCATTTCCTGGTTCCCCCCAGACCCTTGAGCGCTC...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
3UTR CAA 72 bp GACATGTGGGCCGCAGCCCCAGGTGTAGGGACTATATaGATGGGATTGCCTGGAACTCTTCTCTCCTTCCCT +
Preference number: 4 (lower is better)
Translates to: DMWAAAPGVGTI*MGLPGTLLSFP
Trigger: AGGGAAGGAGAGAAGAGTTCCAGGCAATCCCATCAATATAGTCCCTACACCTGGGGCTGCGGCCCACATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGCCGACAGCGCCTGGATaGACTCGGAGAACTCAATTC +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRPTAPG*TRRTQF
Trigger: GAATTGAGTTCTCCGAGTTCATCCAGGCGCTGTCGG...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGATCCAGGGTTCCCCGTaGGGTCACCGACAGCGCCTG +
Preference number: 4 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQIQGSP*GHRQRL
Trigger: CAGGCGCTGTCGGTGACCTCACGGGGAACCCTGGAT...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGCTCAAGCCTTCCCTGTaGAAGGACTCCTTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: PFRVVVFRTSRGCWQLEPLKPSL*KDSFWV
Trigger: GACCCAGAAGGAGTCCTTGCACAGGGAAGGCTTGAG...CGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTACATTCTTATCCATCATaGCAAAGATCCGGTCCACCC +
Preference number: 4 (lower is better)
Translates to: ERRLPARQPSPWFMQRAVHSYPS*QRSGPP
Trigger: GGGTGGACCGGATCTTTGCCATGATGGATAAGAATG...TACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGAGGAGGCATTCGGGCTaGAGGGAACAGTGCATTAGC +
Preference number: 4 (lower is better)
Translates to: PFRVVVFRTSRGCWQLEPRRHSG*REQCIS
Trigger: GCTAATGCACTGTTCCCTCCAGCCCGAATGCCTCCT...CGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGATGCTGAAACCGCGCTaGGAACAGGGTGACTTTCCG +
Preference number: 4 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVMLKPR*EQGDFP
Trigger: CGGAAAGTCACCCTGTTCCCAGCGCGGTTTCAGCAT...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp ATGCAGAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGCTGCATCAGAGCATCTaGAGCGAGCCGCATTGGGTG +
Preference number: 4 (lower is better)
Translates to: MQRAVAFSISCCRFPDKQLHQSI*SEPHWV
Trigger: CACCCAATGCGGCTCGCTTCAGATGCTCTGATGCAG...CTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTCTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCACGGACAAGCAGAGGTTaGTGGCAATTGGAGCCGGTG +
Preference number: 4 (lower is better)
Translates to: VAFSISCCRFPDKQRLLARTSRG*WQLEPV
Trigger: CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCG...TGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR GCA 90 bp GTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCACCGAAGGGGTCCACATaGTTAAGCCCAGACACCCTC +
Preference number: 4 (lower is better)
Translates to: VAFSISCCRFPDKQRLLAPKGST*LSPDTL
Trigger: GAGGGTGTCTGGGCTTAAGCATGTGGACCCCTTCGG...TGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGATGTGGCAAACTTGGTaGGGTCTCCGAACGGGAAGA +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRMWQTW*GLRTGR
Trigger: TCTTCCCGTTCGGAGACCCCACCAAGTTTGCCACAT...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGTCACCGACAGCGCCTaGATGAACTCGGAGAACTCA +
Preference number: 4 (lower is better)
Translates to: SISCCRFPDKQRLLAIGAVTDSA*MNSENS
Trigger: TGAGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGAC...GGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp AGGAGGCATTCGGGCTGGAGGGAACAGTGCATTAGCCATTTAGGAATTTCCACCAGTGTTCTCCTCCTCTaGGAGCTCCACGGTATTCCC +
Preference number: 4 (lower is better)
Translates to: RRHSGWREQCISHLGISTSVLLL*ELHGIP
Trigger: GGGAATACCGTGGAGCTCCCAGAGGAGGAGAACACT...GGTGGAAATTCCTAAATGGCTAATGCACTGTTCCCTCCAGCCCGAATGCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp AGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGTGGACGGGTCTGCCTTaGAACCCTCCTGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: RAVAFSISCCRFPDKQRLWTGLP*NPPGTP
Trigger: AGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCA...CAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp GTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCATGGACGGGTCTGCCTTaGAACCCTCCTGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: VAFSISCCRFPDKQRLLAWTGLP*NPPGTP
Trigger: AGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCA...TGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGTGCACATGTAAACGGTaGGCCCGCAGCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQCTCKR*ARSPGS
Trigger: GCTCCCAGGGCTGCGGGCCCACCGTTTACATGTGCA...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp AGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCCAAGTCGTAGAGCTTaGAGGCCCACCGTAGCTTCT +
Preference number: 4 (lower is better)
Translates to: RAVAFSISCCRFPDKQRLPSRRA*RPTVAS
Trigger: AGAAGCTACGGTGGGCCTTCAAGCTCTACGACTTGG...CAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp AGGAGGCATTCGGGCTGGAGGGAACAGTGCATTAGCCATTTAGGAATTTCCACCAGGCGGGGGTCCCCTTaGTTTCTGCTAACTTACTTC +
Preference number: 4 (lower is better)
Translates to: RRHSGWREQCISHLGISTRRGSP*FLLTYF
Trigger: GAAGTAAGTTAGCAGAAATCAAGGGGACCCCCGCCT...GGTGGAAATTCCTAAATGGCTAATGCACTGTTCCCTCCAGCCCGAATGCCTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp TGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAGGTCAGAGCCCAGCTaGGAAACTTCAGCCGTTGGT +
Preference number: 4 (lower is better)
Translates to: CSLFHFVLSFSGQAEVAGRSEPS*ETSAVG
Trigger: ACCAACGGCTGAAGTTTCTCAGCTGGGCTCTGACCT...GCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp ATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTACCATCAACACAAAGTaGGGAGCAGACGCTACGAGG +
Preference number: 4 (lower is better)
Translates to: ISCCRFPDKQRLLAIGAGTINTK*GADATR
Trigger: CCTCGTAGCGTCTGCTCCTCACTTTGTGTTGATGGT...ACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGCTTCAAACCAACTTCGGGCTTCAACTTaGTGTTGGATTTCCCCATCC +
Preference number: 4 (lower is better)
Translates to: PQAYHLLRPEATPVASNQLRAST*CWISPS
Trigger: GGATGGGGAAATCCAACAGCAAGTTGAAGCCCGAAG...TTGGTTTGAAGCCACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGTCCCCTCTAAAACATaGGCTGATGGGCTGTTGACT +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRVPSKT*ADGLLT
Trigger: AGTCAACAGCCCATCAGCCCATGTTTTAGAGGGGAC...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ATGCAGAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGCTGGCGGGTGGGCAATaGAGGCTTTTTCCAGAGACA +
Preference number: 4 (lower is better)
Translates to: MQRAVAFSISCCRFPDKQLAGGQ*RLFPET
Trigger: TGTCTCTGGAAAAAGCCTCCATTGCCCACCCGCCAG...CTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTCTGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GTGCACTTGTCTAGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGCACAATGGACGGGTCTaGCTTGGAACCCTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: VHLSRKRAVKLKSISGEEHNGRV*LGTLLE
Trigger: TTCCAGGAGGGTTCCAAGGCAGACCCGTCCATTGTG...CTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCTAGACAAGTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGAGGCATTCGGGCTGGAGGGAACAGTGCATTAGCCATTTAGGAATTTCCACCCCCTGTTTTCCATGCTaGGGCAAACACCAAAGCAAG +
Preference number: 4 (lower is better)
Translates to: RRHSGWREQCISHLGISTPCFPC*GKHQSK
Trigger: CTTGCTTTGGTGTTTGCCGCAGCATGGAAAACAGGG...GGTGGAAATTCCTAAATGGCTAATGCACTGTTCCCTCCAGCCCGAATGCCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp TTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGGAAGGGACAAGGTGTaGCACATGACACATTCATCT +
Preference number: 4 (lower is better)
Translates to: FRVVVFRTSRGCWQLEPVGRDKV*HMTHSS
Trigger: AGATGAATGTGTCATGTGGCACACCTTGTCCCTTCC...CACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGACCATGTTCGTTCCCTaGCCCAGACCCCAGGTCAGA +
Preference number: 4 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQTMFVP*PRPQVR
Trigger: TCTGACCTGGGGTCTGGGGCAGGGAACGAACATGGT...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp GAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGGCTGTAGGTGACACGTACGCTTaGCTTGATGTTATTTTAAAC +
Preference number: 4 (lower is better)
Translates to: ERRLPARQPSPWFMQRAVGDTYA*LDVILN
Trigger: GTTTAAAATAACATCAAGGCAAGCGTACGTGTCACC...TACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp GAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTCAAATGTGGCAAACTTaGTGGGGTCTCCGAACGGGA +
Preference number: 4 (lower is better)
Translates to: EGCSLFHFVLSFSGQAEVQMWQT*WGLRTG
Trigger: TCCCGTTCGGAGACCCCACCAAGTTTGCCACATTTG...AACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCAGGCAGCCAAGTCCTTaGTTTATGCAGAGGGCTGTA +
Preference number: 4 (lower is better)
Translates to: SISCCRFPDKQRLLAIGARQPSP*FMQRAV
Trigger: TACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCT...GGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
3UTR CAA 72 bp AAGGCTTCCCATCACAGTGCCCTTAAGTTAATTCACTaGCTATCCAGGGATGGCCTAGCAGAGGGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: KASHHSALKLIH*LSRDGLAEGCL
Trigger: CAGACACCCCTCTGCTAGGCCATCCCTGGATAGCAAGTGAATTAACTTAAGGGCACTGTGATGGGAAGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGAAAACACAAAGTTCCTaGAACCCCAGGTGCACTTGT +
Preference number: 4 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRKTQSS*NPRCTC
Trigger: ACAAGTGCACCTGGGGTTTCAGGAACTTTGTGTTTT...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGCTGGAGGGAACAGTaGATTAGCCATTTAGGAATT +
Preference number: 4 (lower is better)
Translates to: PFRVVVFRTSRGCWQLEPGWREQ*ISHLGI
Trigger: AATTCCTAAATGGCTAATGCACTGTTCCCTCCAGCC...CGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGGACAGTCCCTCGGGCTaGTGGGGTCAAGCAAACTTA +
Preference number: 4 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQDSPSG*WGQANL
Trigger: TAAGTTTGCTTGACCCCAGCAGCCCGAGGGACTGTC...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGATGTCAGTACAGTATGGGCGTGCCCTCTaGATCAGAGCATCTGAAGCG +
Preference number: 4 (lower is better)
Translates to: RKRAVKLKSISGEEMSVQYGRAL*IRASEA
Trigger: CGCTTCAGATGCTCTGATGCAGAGGGCACGCCCATA...CTGTACTGACATCTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR GCA 90 bp AGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTTCTCGGTAATCGTTaGCATCTCTCAATCCCTGGG +
Preference number: 4 (lower is better)
Translates to: RAVAFSISCCRFPDKQRLLLGNR*HLSIPG
Trigger: CCCAGGGATTGAGAGATGGCAACGATTACCGAGAAG...CAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000630865.1
CDS-3UTR CCA 90 bp GTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCACCTTTGTACCACTGCTaGACCTCCTTCTCGGTAAAG +
Preference number: 4 (lower is better)
Translates to: VAFSISCCRFPDKQRLLAPLYHC*TSFSVK
Trigger: CTTTACCGAGAAGGAGGTCCAGCAGTGGTACAAAGG...TGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTCCACCATCTGGTAAATaGCATCCACAATGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: ISCCRFPDKQRLLAIGAGPPSGK*HPQCPA
Trigger: TGCTGGACATTGTGGATGCCATTTACCAGATGGTGG...ACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CCA 90 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCCATTCTTATCCATCATaGCAAAGATCCGGTCCACCC +
Preference number: 4 (lower is better)
Translates to: SISCCRFPDKQRLLAIGAHSYPS*QRSGPP
Trigger: GGGTGGACCGGATCTTTGCCATGATGGATAAGAATG...GGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR TCA 90 bp GTGCACTTGTCTAGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGGCATCTCATTCCTGGTaGTGTAGCCATCATTGTCCA +
Preference number: 4 (lower is better)
Translates to: VHLSRKRAVKLKSISGEEASHSW*CSHHCP
Trigger: TGGACAATGATGGCTACATCACCAGGAATGAGATGC...CTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCTAGACAAGTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp GAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTCAAAGGAAAGTAATTTaGCCTGGGAAAGACCTCCCT +
Preference number: 4 (lower is better)
Translates to: EGCSLFHFVLSFSGQAEVQRKVI*PGKDLP
Trigger: AGGGAGGTCTTTCCCAGGTCAAATTACTTTCCTTTG...AACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR TCA 90 bp ATGCAGAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGCTTAAAATTAAATGCTaGAACCGCGCTGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: MQRAVAFSISCCRFPDKQLKIKC*NRAGNR
Trigger: CCTGTTCCCAGCGCGGTTTCAGCATTTAATTTTAAG...CTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTCTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp CCGTCCTCCACTTCTGTGAGGGGCTTTGATGATGACACTCACATTTGGGTCTCACACCATGCAGTTTACTaGAAAAAGCAGATAGGAAGG +
Preference number: 4 (lower is better)
Translates to: PSSTSVRGFDDDTHIWVSHHAVY*KKQIGR
Trigger: CCTTCCTATCTGCTTTTTCCAGTAAACTGCATGGTG...TGAGACCCAAATGTGAGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp ATGCAGAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGGAAAGTAATTTGACCTaGGAAAGACCTCCCTCATCC +
Preference number: 4 (lower is better)
Translates to: MQRAVAFSISCCRFPDKQESNLT*ERPPSS
Trigger: GGATGAGGGAGGTCTTTCCCAGGTCAAATTACTTTC...CTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTCTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCGGAAGCGTGTTTAATTaGCGTGACATGGACGACATA +
Preference number: 4 (lower is better)
Translates to: CSLFHFVLSFSGQAEVAGGSVFN*RDMDDI
Trigger: TATGTCGTCCATGTCACGCCAATTAAACACGCTTCC...GCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CCA 90 bp TGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCTGCCAAGACAGAAGATaGGACCAGCTGTTTATTCAA +
Preference number: 4 (lower is better)
Translates to: CSLFHFVLSFSGQAEVAGCQDRR*DQLFIQ
Trigger: TTGAATAAACAGCTGGTCCCATCTTCTGTCTTGGCA...GCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATGGTGGACGCACGGGGTaGGTGTCAGGGCTGAGGTGG +
Preference number: 5 (lower is better)
Translates to: GRRLGGRTGLVSGLRWPHGGRTG*VSGLRW
Trigger: CCACCTCAGCCCTGACACCAACCCCGTGCGTCCACC...ATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp AGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACGGGCTGGAGGCCTGCTaGCTGAGGGTGGGAACCGAG +
Preference number: 5 (lower is better)
Translates to: RGCWQLEPVASGGGWVQDGLEAC*LRVGTE
Trigger: CTCGGTTCCCACCCTCAGCAAGCAGGCCTCCAGCCC...GTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp GGGACGCTGGGGTTGGCTGAATGCTCCAGCCAAGGGGAACAGCCACGCAGCCCCCTGAAGCGAGCCGCATaGGGTGGCAAACGCCGCTGT +
Preference number: 5 (lower is better)
Translates to: GTLGLAECSSQGEQPRSPLKRAA*GGKRRC
Trigger: ACAGCGGCGTTTGCCACCCAATGCGGCTCGCTTCAG...GGGGCTGCGTGGCTGTTCCCCTTGGCTGGAGCATTCAGCCAACCCCAGCGTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCAGAGGTTGCTGGCAATaGGAGCCGGTGGCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSRGCWQ*EPVASG
Trigger: GCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCGCAGGGAAAAGGGGTTaGGCAGGAGGCATTCGGGCT +
Preference number: 5 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSAGKRG*AGGIRA
Trigger: AGCCCGAATGCCTCCTGCCAAACCCCTTTTCCCTGC...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp ACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGCCCCCAGGTGCGTaGGCGGCTTACCACCACCAG +
Preference number: 5 (lower is better)
Translates to: TSRGCWQLEPVASGGGWVQPPGA*AAYHHQ
Trigger: CTGGTGGTGGTAAGCCGCCAACGCACCTGGGGGCTG...CACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCTTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS CCA 90 bp GCCCGTCGTAGAGGGACAGCGCCTGCACAATGGACGGGTCTGCCTTaGAACCCTCCTGGAACTCCTGCAGGGTCAGCTTCCCGTCGGCAT +
Preference number: 5 (lower is better)
Translates to: ARRRGTAPAQWTGLP*NPPGTPAGSASRRH
Trigger: ATGCCGACGGGAAGCTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCATTGTGCAGGCGCTGTCCCTCTACGACGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CTGGGCTGCGGTCCGCAAGCATACCATCTGCTAAGGCCAGAAGCCACACCTGTGGGTGGACGCACGGGGTaGGTGTCAGGGCTGAGGTGG +
Preference number: 5 (lower is better)
Translates to: LGCGPQAYHLLRPEATPVGGRTG*VSGLRW
Trigger: CCACCTCAGCCCTGACACCAACCCCGTGCGTCCACC...CACAGGTGTGGCTTCTGGCCTTAGCAGATGGTATGCTTGCGGACCGCAGCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTATGGACGGGTCTGCCTaGGAACCCTCCTGGAACTCC +
Preference number: 5 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGMDGSA*EPSWNS
Trigger: GGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCAT...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCCCTCCCTCCCAGCCTTaGAGCCAAGAGAAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: KVLKEASHRVRLGVRWASPPSQP*SQEKAR
Trigger: CCTGGCCTTCTCTTGGCTCAAAGGCTGGGAGGGAGG...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CACACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTCCTTGATGAAGCCTTaGTACCACTGCTGGACCTCC +
Preference number: 5 (lower is better)
Translates to: HTRKRAGGTEAACEAAKSSLMKP*YHCWTS
Trigger: GGAGGTCCAGCAGTGGTACAAAGGCTTCATCAAGGA...GGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp GGAAGAAGGCTGGGTGGACGCACGGGGTTGGTGTCAGGGCTGAGGTGGCCTCATACAAATGTGGCAAACTaGGTGGGGTCTCCGAACGGG +
Preference number: 5 (lower is better)
Translates to: GRRLGGRTGLVSGLRWPHTNVAN*VGSPNG
Trigger: CCCGTTCGGAGACCCCACCAAGTTTGCCACATTTGT...ATGAGGCCACCTCAGCCCTGACACCAACCCCGTGCGTCCACCCAGCCTTCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp AGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGACGAGGCAGCCAAGTCCTaGGTTTATGCAGAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: RGCWQLEPVASGGGWVQDEAAKS*VYAEGC
Trigger: ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTC...GTCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CAGAGGTTGCTGGCAATTGGAGCCGGTGGCTTCAGGCGGGGGATGGGTGCAGGAGAGGCAGCCAAGTCCTaGGTTTATGCAGAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: QRLLAIGAGGFRRGMGAGEAAKS*VYAEGC
Trigger: ACAGCCCTCTGCATAAACCAAGGACTTGGCTGCCTC...TCCTGCACCCATCCCCCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGAGGCGGGGGTCCCCTaGATTTCTGCTAACTTACTT +
Preference number: 5 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLEAGVP*ISANLL
Trigger: AAGTAAGTTAGCAGAAATCAAGGGGACCCCCGCCTC...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CCTCAAGCCTTCCCTGTGCAAGGACTCCTTCTGGGTCCCAAAGAGCGCTCAAGGCCGGACAAGCAGAGGTaGCTGGCAATTGGAGCCGGT +
Preference number: 5 (lower is better)
Translates to: PQAFPVQGLLLGPKERSRPDKQR*LAIGAG
Trigger: ACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGG...CCTTGAGCGCTCTTTGGGACCCAGAAGGAGTCCTTGCACAGGGAAGGCTTGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp AAAGTCCTGAAGGAAGCCAGCCACCGAGTCAGGCTGGGAGTGAGGTGGGCCTCCAAACCCCAGGTGCACTaGTCTAGGAAACGGGCTGTC +
Preference number: 5 (lower is better)
Translates to: KVLKEASHRVRLGVRWASKPQVH*SRKRAV
Trigger: GACAGCCCGTTTCCTAGACAAGTGCACCTGGGGTTT...GGAGGCCCACCTCACTCCCAGCCTGACTCGGTGGCTGGCTTCCTTCAGGACTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp AAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGGAGGCACCTGGCTCAGGATCAAGGGATGGGGAAATaGAGACCCAATGAGCAGAAC +
Preference number: 5 (lower is better)
Translates to: KRRCGEAHGLLRRHLAQDQGMGK*RPNEQN
Trigger: GTTCTGCTCATTGGGTCTCAATTTCCCCATCCCTTG...ATCCTGAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp AGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATGCAGAGGCTTCAACTTGCTGTaGGATTTCCCCATCCTCGGC +
Preference number: 5 (lower is better)
Translates to: SGRNGGCLRGSQVLGLCRGFNLL*DFPILG
Trigger: GCCGAGGATGGGGAAATCCAACAGCAAGTTGAAGCC...TCTGCATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp GGGACGCTGGGGTTGGCTGAATGCTCCAGCCAAGGGGAACAGCCACGCAGCCCCCTTTTCCATTTCGTGTaGTCGTTTTCCGGACAAGCA +
Preference number: 5 (lower is better)
Translates to: GTLGLAECSSQGEQPRSPLFHFV*SFSGQA
Trigger: TGCTTGTCCGGAAAACGACAACACGAAATGGAAAAG...GGGGCTGCGTGGCTGTTCCCCTTGGCTGGAGCATTCAGCCAACCCCAGCGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp GCAGCCGGCTGTGTGTGGATGCGGAAGAAGGCTGGGTGGACGCACGGGGTTGGTCCAAAGGAAAGTAATTaGACCTGGGAAAGACCTCCC +
Preference number: 5 (lower is better)
Translates to: AAGCVWMRKKAGWTHGVGPKESN*TWERPP
Trigger: GGGAGGTCTTTCCCAGGTCAAATTACTTTCCTTTGG...ACCAACCCCGTGCGTCCACCCAGCCTTCTTCCGCATCCACACACAGCCGGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATTCCAAACCGCTACTCTaGGGCACCGTCCTCCACTTC +
Preference number: 5 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYSKPLL*GTVLHF
Trigger: GAAGTGGAGGACGGTGCCCAAGAGTAGCGGTTTGGA...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS GCA 90 bp GCCTGCACAATGGACGGGTCTGCCTTGGAACCCTCCTGGAACTCCTaGAGGGTCAGCTTCCCGTCGGCATTCTTATCCATCATGGCAAAG +
Preference number: 5 (lower is better)
Translates to: ACTMDGSALEPSWNS*RVSFPSAFLSIMAK
Trigger: CTTTGCCATGATGGATAAGAATGCCGACGGGAAGCTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCATTGTGCAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp AAACGCCGCTGTGGAGAGGCGCACGGGCTGCTCAGGAGGCACCTGGCTCAGGATTCAATTCGCCCGTCCTaGTTTTCATCAAAGACGTTG +
Preference number: 5 (lower is better)
Translates to: KRRCGEAHGLLRRHLAQDSIRPS*FSSKTL
Trigger: CAACGTCTTTGATGAAAACAAGGACGGGCGAATTGA...ATCCTGAGCCAGGTGCCTCCTGAGCAGCCCGTGCGCCTCTCCACAGCGGCGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp ACGCGCAAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGCTTTTCCATTTCGTGTaGTCGTTTTCCGGACAAGCA +
Preference number: 5 (lower is better)
Translates to: TRKRAGGTEAACEAAKSLLFHFV*SFSGQA
Trigger: TGCTTGTCCGGAAAACGACAACACGAAATGGAAAAG...CAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTTGCGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CAACGTCACTACGGCAGAGGCCTTCCTCGGGCTGGAGGCCTGCTTGCTGAGGGTGGTGTAGGGACTATATaGATGGGATTGCCTGGAACT +
Preference number: 5 (lower is better)
Translates to: QRHYGRGLPRAGGLLAEGGVGTI*MGLPGT
Trigger: AGTTCCAGGCAATCCCATCAATATAGTCCCTACACC...ACCCTCAGCAAGCAGGCCTCCAGCCCGAGGAAGGCCTCTGCCGTAGTGACGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS TCA 90 bp AGCAGCACAAGAATAGAAGGCGGGGCCTTTGGGCCTGGCCACGAGTaGCCCATCTTACTAAATCAGACAGTCCCCTCGGTCCTGACACCT +
Preference number: 5 (lower is better)
Translates to: SSTRIEGGAFGPGHE*PILLNQTVPSVLTP
Trigger: AGGTGTCAGGACCGAGGGGACTGTCTGATTTAGTAAGATGGGTCACTCGTGGCCAGGCCCAAAGGCCCCGCCTTCTATTCTTGTGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000493042.1
CDS-3UTR CAA 90 bp AAGAGAGCGGGAGGAACGGAGGCTGCCTGCGAGGCAGCCAAGTCCTTGGTTTATTCCTTGATGAAGCCTTaGTACCACTGCTGGACCTCC +
Preference number: 5 (lower is better)
Translates to: KRAGGTEAACEAAKSLVYSLMKP*YHCWTS
Trigger: GGAGGTCCAGCAGTGGTACAAAGGCTTCATCAAGGA...ATAAACCAAGGACTTGGCTGCCTCGCAGGCAGCCTCCGTTCCTCCCGCTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGATGGACGGGTCTGCCTaGGAACCCTCCTGGAACTCC +
Preference number: 5 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRMDGSA*EPSWNS
Trigger: GGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCAT...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp ACACCCTCAGCCACAGGTCAGGTTGTACAACAGTGTCAGTCCCATTGGACCAGAAGAGGTTGCTGGCAATaGGAGCCGGTGGCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: TPSATGQVVQQCQSHWTRRGCWQ*EPVASG
Trigger: GCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCT...TCTGGTCCAATGGGACTGACACTGTTGTACAACCTGACCTGTGGCTGAGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGCCGGACAAGCAGAGGTaGCTGGCAATTGGAGCCGGT +
Preference number: 5 (lower is better)
Translates to: PFRVVVFRTSRGCWQLEPPDKQR*LAIGAG
Trigger: ACCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGG...CGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp ATGCAGAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGCAAGGGCCGGACCTaGGGCTCCTACCTCTGGTCC +
Preference number: 5 (lower is better)
Translates to: MQRAVAFSISCCRFPDKQSKGRT*GSYLWS
Trigger: GGACCAGAGGTAGGAGCCCAAGGTCCGGCCCTTGCT...CTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTCTGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS CCA 90 bp CGTAGCTTCTCATCCAGGGTTCCCCGTGAGGTCACCGACAGCGCCTaGATGAACTCGGAGAACTCAATTCGCCCGTCCTTGTTTTCATCA +
Preference number: 5 (lower is better)
Translates to: RSFSSRVPREVTDSA*MNSENSIRPSLFSS
Trigger: TGATGAAAACAAGGACGGGCGAATTGAGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGACCTCACGGGGAACCCTGGATGAGAAGCTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGGCCACGCAGGTGGTTTaGCTGCCAAAAGATGGGACG +
Preference number: 5 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRATQVV*LPKDGT
Trigger: CGTCCCATCTTTTGGCAGCAAAACCACCTGCGTGGC...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGTGGGCTGATGGGCTGTaGACTCTGCAAAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRWADGL*TLQSSS
Trigger: GCTGCTGCTTTGCAGAGTCAACAGCCCATCAGCCCA...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS TCA 90 bp GCTTCTCATCCAGGGTTCCCCGTGAGGTCACCGACAGCGCCTGGATaGACTCGGAGAACTCAATTCGCCCGTCCTTGTTTTCATCAAAGA +
Preference number: 5 (lower is better)
Translates to: ASHPGFPVRSPTAPG*TRRTQFARPCFHQR
Trigger: TCTTTGATGAAAACAAGGACGGGCGAATTGAGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGACCTCACGGGGAACCCTGGATGAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS CCA 90 bp TTTGGGTTTGAGCAGCACAAGAATAGAAGGCGGGGCCTTTGGGCCTaGCCACGAGTGACCCATCTTACTAAATCAGACAGTCCCCTCGGT +
Preference number: 5 (lower is better)
Translates to: FGFEQHKNRRRGLWA*PRVTHLTKSDSPLG
Trigger: ACCGAGGGGACTGTCTGATTTAGTAAGATGGGTCACTCGTGGCCAGGCCCAAAGGCCCCGCCTTCTATTCTTGTGCTGCTCAAACCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000493042.1
CDS-3UTR CAA 90 bp CCGTCCTCCACTTCTGTGAGGGGCTTTGATGATGACACTCACATTTGGGTCTCAGAGAAACTTCAGCCGTaGGTGCTGAGTCCCAGGTCG +
Preference number: 5 (lower is better)
Translates to: PSSTSVRGFDDDTHIWVSEKLQP*VLSPRS
Trigger: CGACCTGGGACTCAGCACCAACGGCTGAAGTTTCTC...TGAGACCCAAATGTGAGTGTCATCATCAAAGCCCCTCACAGAAGTGGAGGACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGCAGCCACAGGTCAGGTaGTACAACAGTGTCAGTCCC +
Preference number: 5 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRQPQVR*YNSVSP
Trigger: GGGACTGACACTGTTGTACAACCTGACCTGTGGCTG...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp ATGCAGAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGACAAATGTGGCAAACTaGGTGGGGTCTCCGAACGGG +
Preference number: 5 (lower is better)
Translates to: MQRAVAFSISCCRFPDKQTNVAN*VGSPNG
Trigger: CCCGTTCGGAGACCCCACCAAGTTTGCCACATTTGT...CTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTCTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp AGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGACTTCGGGCTTCAACTaGCTGTTGGATTTCCCCATC +
Preference number: 5 (lower is better)
Translates to: RAVAFSISCCRFPDKQRLTSGFN*LLDFPI
Trigger: GATGGGGAAATCCAACAGCAAGTTGAAGCCCGAAGT...CAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp TCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCTCAATTCGCCCGTCCTaGTTTTCATCAAAGACGTTG +
Preference number: 5 (lower is better)
Translates to: SISCCRFPDKQRLLAIGASIRPS*FSSKTL
Trigger: CAACGTCTTTGATGAAAACAAGGACGGGCGAATTGA...GGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp CATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCAATTGGAGCCGGCTTAAGTTAATTCACTaGCTATCCAGGGATGGCCTA +
Preference number: 5 (lower is better)
Translates to: HFVLSFSGQAEVAGNWSRLKLIH*LSRDGL
Trigger: TAGGCCATCCCTGGATAGCAAGTGAATTAACTTAAG...CCGGCTCCAATTGCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp GAGGGCTGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTTCCGAACGGGAAGAATaGCTTGTAGATCTTCTGGAA +
Preference number: 5 (lower is better)
Translates to: EGCSLFHFVLSFSGQAEVSEREE*LVDLLE
Trigger: TTCCAGAAGATCTACAAGCAATTCTTCCCGTTCGGA...AACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACAGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS-3UTR CAA 90 bp TGTAGCCTTTTCCATTTCGTGTTGTCGTTTTCCGGACAAGCAGAGGTTGCTGGCACACCAAAGCAAGAGTaGAGAAACCTAAAGATGTCC +
Preference number: 5 (lower is better)
Translates to: CSLFHFVLSFSGQAEVAGTPKQE*RNLKMS
Trigger: GGACATCTTTAGGTTTCTCAACTCTTGCTTTGGTGT...GCCAGCAACCTCTGCTTGTCCGGAAAACGACAACACGAAATGGAAAAGGCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS-3UTR CAA 90 bp GTGCACTTGTCTAGGAAACGGGCTGTCAAACTGAAAAGCATTTCAGGGGAAGAGACTATATTGATGGGATaGCCTGGAACTCTTCTCTCC +
Preference number: 5 (lower is better)
Translates to: VHLSRKRAVKLKSISGEETILMG*PGTLLS
Trigger: GGAGAGAAGAGTTCCAGGCAATCCCATCAATATAGT...CTCTTCCCCTGAAATGCTTTTCAGTTTGACAGCCCGTTTCCTAGACAAGTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS CAA 72 bp GTCAGCTCCTCCACAACTTCGGGCTTCAACTTGCTGTaGGATTTCCCCATCCTCGGCGGCCGCGGCCCCCGC +
Preference number: 6 (lower is better)
Translates to: VSSSTTSGFNLL*DFPILGGRGPR
Trigger: GCGGGGGCCGCGGCCGCCGAGGATGGGGAAATCCAACAGCAAGTTGAAGCCCGAAGTTGTGGAGGAGCTGAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS GCA 72 bp GTCGTAGAGGGACAGCGCCTGCACAATGGACGGGTCTaGCTTGGAACCCTCCTGGAACTCCTGCAGGGTCAG +
Preference number: 6 (lower is better)
Translates to: VVEGQRLHNGRV*LGTLLELLQGQ
Trigger: CTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCATTGTGCAGGCGCTGTCCCTCTACGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS CCA 72 bp AGAGGGACAGCGCCTGCACAATGGACGGGTCTGCCTTaGAACCCTCCTGGAACTCCTGCAGGGTCAGCTTCC +
Preference number: 6 (lower is better)
Translates to: RGTAPAQWTGLP*NPPGTPAGSAS
Trigger: GGAAGCTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCATTGTGCAGGCGCTGTCCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS CAA 72 bp TTCCTGGTCAGCTCCTCCACAACTTCGGGCTTCAACTaGCTGTTGGATTTCCCCATCCTCGGCGGCCGCGGC +
Preference number: 6 (lower is better)
Translates to: FLVSSSTTSGFN*LLDFPILGGRG
Trigger: GCCGCGGCCGCCGAGGATGGGGAAATCCAACAGCAAGTTGAAGCCCGAAGTTGTGGAGGAGCTGACCAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372398.6
CDS CCA 72 bp TCATCCAGGGTTCCCCGTGAGGTCACCGACAGCGCCTaGATGAACTCGGAGAACTCAATTCGCCCGTCCTTG +
Preference number: 6 (lower is better)
Translates to: SSRVPREVTDSA*MNSENSIRPSL
Trigger: CAAGGACGGGCGAATTGAGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGACCTCACGGGGAACCCTGGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS TCA 72 bp CCAGGGTTCCCCGTGAGGTCACCGACAGCGCCTGGATaGACTCGGAGAACTCAATTCGCCCGTCCTTGTTTT +
Preference number: 6 (lower is better)
Translates to: PGFPVRSPTAPG*TRRTQFARPCF
Trigger: AAAACAAGGACGGGCGAATTGAGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGACCTCACGGGGAACCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS GCA 72 bp ATGGACGGGTCTGCCTTGGAACCCTCCTGGAACTCCTaGAGGGTCAGCTTCCCGTCGGCATTCTTATCCATC +
Preference number: 6 (lower is better)
Translates to: MDGSALEPSWNS*RVSFPSAFLSI
Trigger: GATGGATAAGAATGCCGACGGGAAGCTGACCCTGCAGGAGTTCCAGGAGGGTTCCAAGGCAGACCCGTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS TCA 72 bp AGAATAGAAGGCGGGGCCTTTGGGCCTGGCCACGAGTaGCCCATCTTACTAAATCAGACAGTCCCCTCGGTC +
Preference number: 6 (lower is better)
Translates to: RIEGGAFGPGHE*PILLNQTVPSV
Trigger: GACCGAGGGGACTGTCTGATTTAGTAAGATGGGTCACTCGTGGCCAGGCCCAAAGGCCCCGCCTTCTATTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000493042.1
CDS CCA 72 bp CCGGTCCACCCTCTTCTCAGGAGTGTTCTCCTCCTCTaGGAGCTCCACGGTATTCCCCACCATCTGGTAAAT +
Preference number: 6 (lower is better)
Translates to: PVHPLLRSVLLL*ELHGIPHHLVN
Trigger: ATTTACCAGATGGTGGGGAATACCGTGGAGCTCCCAGAGGAGGAGAACACTCCTGAGAAGAGGGTGGACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1
CDS GCA 72 bp GAACGGGAAGAATTGCTTGTAGATCTTCTGGAAGCCTaGCGCATCCAGCTGCCCACTGGGGCAGTCCTTGAT +
Preference number: 6 (lower is better)
Translates to: EREELLVDLLEA*RIQLPTGAVLD
Trigger: ATCAAGGACTGCCCCAGTGGGCAGCTGGATGCGGCAGGCTTCCAGAAGATCTACAAGCAATTCTTCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000372398.6
ENST00000493042.1
ENST00000630865.1
CDS CCA 72 bp GAGCAGCACAAGAATAGAAGGCGGGGCCTTTGGGCCTaGCCACGAGTGACCCATCTTACTAAATCAGACAGT +
Preference number: 6 (lower is better)
Translates to: EQHKNRRRGLWA*PRVTHLTKSDS
Trigger: ACTGTCTGATTTAGTAAGATGGGTCACTCGTGGCCAGGCCCAAAGGCCCCGCCTTCTATTCTTGTGCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000493042.1
CDS CAA 90 bp GAAAACAAATGTGGCAAACTTGGTGGGGTCTCCGAACGGGAAGAATaGCTTGTAGATCTTCTGGAAGCCTGCCGCATCCAGCTGCCCACT +
Preference number: 6 (lower is better)
Translates to: ENKCGKLGGVSEREE*LVDLLEACRIQLPT
Trigger: AGTGGGCAGCTGGATGCGGCAGGCTTCCAGAAGATCTACAAGCAATTCTTCCCGTTCGGAGACCCCACCAAGTTTGCCACATTTGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000372398.6
ENST00000630865.1