Pregenerated sensors for NCRNA00250 (Homo sapiens)
Ensembl gene IDs: ENSG00000253433Ensembl transcript IDs: ENST00000519500.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTGCCTCCAGGCAAAATTGTGGCCTGCAGAGGGTGGACCCTGCATTaGATCTCAGCGAGAACGGAAAGCTCACTCAGCATGCTGCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: LPPGKIVACRGWTLH*ISARTESSLSMLQS Trigger: AGACTGCAGCATGCTGAGTGAGCTTTCCGTTCTCGCTGAGATGCAATGCAGGGTCCACCCTCTGCAGGCCACAATTTTGCCTGGAGGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS GCA 90 bp | ATGCTTTGCCTCCAGGCAAAATTGTGGCCTGCAGAGGGTGGACCCTaGATTGCATCTCAGCGAGAACGGAAAGCTCACTCAGCATGCTGC | + |
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Preference number: 5 (lower is better) Translates to: MLCLQAKLWPAEGGP*IASQRERKAHSACC Trigger: GCAGCATGCTGAGTGAGCTTTCCGTTCTCGCTGAGATGCAATGCAGGGTCCACCCTCTGCAGGCCACAATTTTGCCTGGAGGCAAAGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS TCA 90 bp | GCTTACAACAATAACGGCTTCTCTCTGGCTTGTGTTCATGCCCTTTaGAGATCAGCTGCAGCCCTGCTCCATGTTCTCTTTATGATGAAA | + |
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Preference number: 5 (lower is better) Translates to: AYNNNGFSLACVHAL*RSAAALLHVLFMMK Trigger: TTTCATCATAAAGAGAACATGGAGCAGGGCTGCAGCTGATCTTCAAAGGGCATGAACACAAGCCAGAGAGAAGCCGTTATTGTTGTAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS CAA 90 bp | TTTGCCTCCAGGCAAAATTGTGGCCTGCAGAGGGTGGACCCTGCATaGCATCTCAGCGAGAACGGAAAGCTCACTCAGCATGCTGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: FASRQNCGLQRVDPA*HLSENGKLTQHAAV Trigger: GACTGCAGCATGCTGAGTGAGCTTTCCGTTCTCGCTGAGATGCAATGCAGGGTCCACCCTCTGCAGGCCACAATTTTGCCTGGAGGCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS GCA 72 bp | GGCAAAATTGTGGCCTGCAGAGGGTGGACCCTGCATTaGATCTCAGCGAGAACGGAAAGCTCACTCAGCATG | + |
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Preference number: 6 (lower is better) Translates to: GKIVACRGWTLH*ISARTESSLSM Trigger: CATGCTGAGTGAGCTTTCCGTTCTCGCTGAGATGCAATGCAGGGTCCACCCTCTGCAGGCCACAATTTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS CCA 72 bp | GCAGGCCCTCTCCAGTTGCTAGTGCATTTTGTCTGTTaGCCTCAAAGCTTGGCTCAAATTGTCAGGCCAATG | + |
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Preference number: 6 (lower is better) Translates to: AGPLQLLVHFVC*PQSLAQIVRPM Trigger: CATTGGCCTGACAATTTGAGCCAAGCTTTGAGGCCAACAGACAAAATGCACTAGCAACTGGAGAGGGCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS CAA 72 bp | GCTCAAATTGTCAGGCCAATGGAAAGACTGAATGCTTaGCCTCCAGGCAAAATTGTGGCCTGCAGAGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: AQIVRPMERLNA*PPGKIVACRGW Trigger: CCACCCTCTGCAGGCCACAATTTTGCCTGGAGGCAAAGCATTCAGTCTTTCCATTGGCCTGACAATTTGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS CAA 90 bp | GGCCCTCTCCAGTTGCTAGTGCATTTTGTCTGTTGGCCTCAAAGCTaGGCTCAAATTGTCAGGCCAATGGAAAGACTGAATGCTTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: GPLQLLVHFVCWPQS*AQIVRPMERLNALP Trigger: AGGCAAAGCATTCAGTCTTTCCATTGGCCTGACAATTTGAGCCAAGCTTTGAGGCCAACAGACAAAATGCACTAGCAACTGGAGAGGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS TCA 72 bp | AATAACGGCTTCTCTCTGGCTTGTGTTCATGCCCTTTaGAGATCAGCTGCAGCCCTGCTCCATGTTCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: NNGFSLACVHAL*RSAAALLHVLF Trigger: AAAGAGAACATGGAGCAGGGCTGCAGCTGATCTTCAAAGGGCATGAACACAAGCCAGAGAGAAGCCGTTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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| CDS CAA 72 bp | CAGTTGCTAGTGCATTTTGTCTGTTGGCCTCAAAGCTaGGCTCAAATTGTCAGGCCAATGGAAAGACTGAAT | + |
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Preference number: 6 (lower is better) Translates to: QLLVHFVCWPQS*AQIVRPMERLN Trigger: ATTCAGTCTTTCCATTGGCCTGACAATTTGAGCCAAGCTTTGAGGCCAACAGACAAAATGCACTAGCAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519500.1 |
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