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Pregenerated sensors for NCR3LG1 (Homo sapiens)

Ensembl gene IDs: ENSG00000188211

Ensembl transcript IDs: ENST00000338965.9, ENST00000530403.1

Found 312 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGAATCACCTGGTGCTCCCGGGTAGTAACAGCAGTCTGAGCCACTaGAGCCAGGGAGTTGAGCCCCAGGACCCATCAGTCCTGCTGGAC +
Preference number: 1 (lower is better)
Translates to: QNHLVLPGSNSSLSH*SQGVEPQDPSVLLD
Trigger: GTCCAGCAGGACTGATGGGTCCTGGGGCTCAACTCCCTGGCTCCAGTGGCTCAGACTGCTGTTACTACCCGGGAGCACCAGGTGATTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 90 bp TCGAACTCCAGAATCACCTGGTGCTCCCGGGTAGTAACAGCAGTCTaGGCCACTGGAGCCAGGGAGTTGAGCCCCAGGACCCATCAGTCC +
Preference number: 1 (lower is better)
Translates to: SNSRITWCSRVVTAV*ATGARELSPRTHQS
Trigger: GGACTGATGGGTCCTGGGGCTCAACTCCCTGGCTCCAGTGGCTCAGACTGCTGTTACTACCCGGGAGCACCAGGTGATTCTGGAGTTCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 90 bp GCCACTGGAGCCAGGGAGTTGAGCCCCAGGACCCATCAGTCCTGCTaGACCATTTGTGAGACTGGCTCTGGACTCAGTGACCTATGCTTC +
Preference number: 1 (lower is better)
Translates to: ATGARELSPRTHQSC*TICETGSGLSDLCF
Trigger: GAAGCATAGGTCACTGAGTCCAGAGCCAGTCTCACAAATGGTCCAGCAGGACTGATGGGTCCTGGGGCTCAACTCCCTGGCTCCAGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 90 bp ATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATACTaGACAGGGTTGAGGTGGCTTCTTCTTGCTGCCTGGGCAGTCCCT +
Preference number: 1 (lower is better)
Translates to: MLPRTVCLPVVPIVY*TGLRWLLLAAWAVP
Trigger: AGGGACTGCCCAGGCAGCAAGAAGAAGCCACCTCAACCCTGTCCAGTATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR TCA 90 bp GGGACACGATATGCCCTGGCCAATATCTCAGATAATGCCCCCTTGTaGCAGGGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCAC +
Preference number: 1 (lower is better)
Translates to: GTRYALANISDNAPL*QGLSVQKSPVLFTH
Trigger: GTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCCCTGTCACAAGGGGGCATTATCTGAGATATTGGCCAGGGCATATCGTGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 90 bp CTATGGGAGGAACGAAGGCCTGAATTGGAGAGGAAAACAGAAGCCTaGCTCCAGTGTCCAGAAAGAAGTCTACCTTCCTCCCTTCGAACT +
Preference number: 1 (lower is better)
Translates to: LWEERRPELERKTEA*LQCPERSLPSSLRT
Trigger: AGTTCGAAGGGAGGAAGGTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCCCATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 90 bp AGATGCCCATCATGGTTGTGCTATGGGAGGAACGAAGGCCTGAATTaGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTC +
Preference number: 1 (lower is better)
Translates to: RCPSWLCYGRNEGLN*RGKQKPGSSVQKEV
Trigger: GACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGATGGGCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 90 bp AGAGGCTTGGCTCTGGTCCTCTGTAGGCCCTCTAATAAGCACATTTaGAAATGTTTTCTTTGCCACTCATCTAAGGTACCACTGGGGTCC +
Preference number: 1 (lower is better)
Translates to: RGLALVLCRPSNKHI*KCFLCHSSKVPLGS
Trigger: GGACCCCAGTGGTACCTTAGATGAGTGGCAAAGAAAACATTTTCAAATGTGCTTATTAGAGGGCCTACAGAGGACCAGAGCCAAGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR CCA 90 bp TCTTTGGGGAAAGTGTTTTCTGGCACCAGGGAGGAAATGCTTTCCTaGGAGGAGTTAGTTACTCAGTTGAAAGTGTTCCCATACCATGTT +
Preference number: 1 (lower is better)
Translates to: SLGKVFSGTREEMLS*EELVTQLKVFPYHV
Trigger: AACATGGTATGGGAACACTTTCAACTGAGTAACTAACTCCTCCCAGGAAAGCATTTCCTCCCTGGTGCCAGAAAACACTTTCCCCAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 90 bp GCCTCTACCCAGTTAATGAAGGTATGCACCCACACCAAAAGACATTaGATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAG +
Preference number: 1 (lower is better)
Translates to: ASTQLMKVCTHTKRH*MPFILGIWVKSICQ
Trigger: CTGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTGGTGTGGGTGCATACCTTCATTAACTGGGTAGAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 90 bp TTGCTTAGTTCAAGTGCTCTTGTGAGAGGGATCAGCTCAACTGATTaGGTGTGTGTGCCTGGTGAGAGAGGCACATTTTCAATGTTATTT +
Preference number: 1 (lower is better)
Translates to: LLSSSALVRGISSTD*VCVPGERGTFSMLF
Trigger: AAATAACATTGAAAATGTGCCTCTCTCACCAGGCACACACACTCAATCAGTTGAGCTGATCCCTCTCACAAGAGCACTTGAACTAAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 90 bp GGGGCACAGAGGAGAATGTCATCTACATATTGTAAAACTTTAACCTaGGAATGGAAGAATTCGAAGAGATCTCTTGACAATACTTGCCCA +
Preference number: 1 (lower is better)
Translates to: GAQRRMSSTYCKTLT*EWKNSKRSLDNTCP
Trigger: TGGGCAAGTATTGTCAAGAGATCTCTTCGAATTCTTCCATTCTCAGGTTAAAGTTTTACAATATGTAGATGACATTCTCCTCTGTGCCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 90 bp TATTGGGTATGTGAATGCTGGTTGTTTCTCACCTTCTTTCCTTATTaGGTGGCTATAGAAGACATGTTGTTCATCTCTGAATTTTTCTGC +
Preference number: 1 (lower is better)
Translates to: YWVCECWLFLTFFPY*VAIEDMLFISEFFC
Trigger: GCAGAAAAATTCAGAGATGAACAACATGTCTTCTATAGCCACTCAATAAGGAAAGAAGGTGAGAAACAACCAGCATTCACATACCCAATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR GCA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACAGGTCCCCTCTTATTTaGCCAAGGTCCTGTAATGAA +
Preference number: 2 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYRSPLI*PRSCNE
Trigger: TTCATTACAGGACCTTGGGCAAATAAGAGGGGACCT...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR GCA 90 bp GACTCCCTGTCCTACAAAAGAGCTCCCATCCATAAAGTGGGTCCAGTCTGGATTCAAGCATCCCTCAGCTaGTTGAGGGTTCTGGGGAGA +
Preference number: 2 (lower is better)
Translates to: DSLSYKRAPIHKVGPVWIQASLS*LRVLGR
Trigger: TCTCCCCAGAACCCTCAAGCAGCTGAGGGATGCTTG...AATCCAGACTGGACCCACTTTATGGATGGGAGCTCTTTTGTAGGACAGGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACCAGTCTGCCTTCCAGTaGTCCCCATTGTATACTGGA +
Preference number: 2 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHQSAFQ*SPLYTG
Trigger: TCCAGTATACAATGGGGACCACTGGAAGGCAGACTG...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAAGCAGTCTGAGCCACTaGAGCCAGGGAGTTGAGCCC +
Preference number: 2 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGSSLSH*SQGVEP
Trigger: GGGCTCAACTCCCTGGCTCCAGTGGCTCAGACTGCT...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CAA 90 bp GAGATGCCCATCATGGTTGTGCTATGGGAGGAACGAAGGCCTGAATaGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGT +
Preference number: 2 (lower is better)
Translates to: EMPIMVVLWEERRPE*ERKTEAWLQCPERS
Trigger: ACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGATGGGCATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR TCA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAGTAGTAACAGCAGTCTaGGCCACTGGAGCCAGGGAG +
Preference number: 2 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGVVTAV*ATGARE
Trigger: CTCCCTGGCTCCAGTGGCTCAGACTGCTGTTACTAC...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR TCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACAAAAAGTGGGATCCTTaGGGTGGATCCAGACTGGTA +
Preference number: 2 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHKKWDP*GGSRLV
Trigger: TACCAGTCTGGATCCACCTCAAGGATCCCACTTTTT...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR GCA 90 bp CATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCTCGCATCTCTGAATTTTTCTaGTGCCTGCAGGGCTACCTG +
Preference number: 2 (lower is better)
Translates to: HLRYHWGPNYVVQGALPRISEFF*CLQGYL
Trigger: CAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGAT...GCGAGGCAGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACTTAAGAATCTTCCATTaGCTGGAGGCTGGCAAGCGT +
Preference number: 2 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHLRIFH*LEAGKR
Trigger: ACGCTTGCCAGCCTCCAGCCAATGGAAGATTCTTAA...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR GCA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAGAGGTGGCTTCTTCTTaGTGCCTGGGCAGTCCCTTT +
Preference number: 2 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGEVASS*CLGSPF
Trigger: AAAGGGACTGCCCAGGCAGCAAGAAGAAGCCACCTC...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACTGCTATCTAATCCCATaGCCTGTTTCTCTAGCTTCC +
Preference number: 2 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHCYLIP*PVSLAS
Trigger: GGAAGCTAGAGAAACAGGCCATGGGATTAGATAGCA...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR TCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACACCTTCTTTCCTTATTaGGTGGCTATAGAAGACATG +
Preference number: 2 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHTFFPY*VAIEDM
Trigger: CATGTCTTCTATAGCCACTCAATAAGGAAAGAAGGT...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR GCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTTCTGAATTTTTCTGCTaGCTGCAGGGCTACCTGTTT +
Preference number: 2 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTSEFFC*LQGYLF
Trigger: AAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGA...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR GCA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCATCTCTGAATTTTTCTaGTGCCTGCAGGGCTACCTG +
Preference number: 2 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCISEFF*CLQGYL
Trigger: CAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGAT...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR CCA 90 bp GACTCCCTGTCCTACAAAAGAGCTCCCATCCATAAAGTGGGTCCAGTCTGGATTCTAGCAGGTGTACCTTaGGGATACTGGGTTTTATAC +
Preference number: 2 (lower is better)
Translates to: DSLSYKRAPIHKVGPVWILAGVP*GYWVLY
Trigger: GTATAAAACCCAGTATCCCCAAGGTACACCTGCTAG...AATCCAGACTGGACCCACTTTATGGATGGGAGCTCTTTTGTAGGACAGGGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR TCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTCATGTTGTTCATCTCTaGATTTTTCTGCTGCCTGCA +
Preference number: 2 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTHVVHL*IFLLPA
Trigger: TGCAGGCAGCAGAAAAATTCAGAGATGAACAACATG...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATATCTCTAGCTTCCTTCTaGTATCAGGGGCTGTCTGAG +
Preference number: 2 (lower is better)
Translates to: FATLVATSRCTLGILGFISLASF*YQGLSE
Trigger: CTCAGACAGCCCCTGATATCAGAAGGAAGCTAGAGA...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR CCA 90 bp CCTCGCCTAGTGCTCTTGTTCCCTTCTGACAAGACCAGACCTAGGTACTTTACCTGGGTATGTGAATGCTaGTTGTTTCTCACCTTCTTT +
Preference number: 2 (lower is better)
Translates to: PRLVLLFPSDKTRPRYFTWVCEC*LFLTFF
Trigger: AAAGAAGGTGAGAAACAACCAGCATTCACATACCCA...GGTAAAGTACCTAGGTCTGGTCTTGTCAGAAGGGAACAAGAGCACTAGGCGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGATCATGGTTGTGCTATaGGAGGAACGAAGGCCTGAA +
Preference number: 2 (lower is better)
Translates to: FEALYPFPARKLRRASVPIMVVL*EERRPE
Trigger: TTCAGGCCTTCGTTCCTCCCATAGCACAACCATGAT...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR TCA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACTTCCTATTGGGTATGTaGATGCTGGTTGTTTCTCAC +
Preference number: 2 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYFLLGM*MLVVSH
Trigger: GTGAGAAACAACCAGCATTCACATACCCAATAGGAA...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR TCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTCCTATTGGGTATGTaGATGCTGGTTGTTTCTCAC +
Preference number: 2 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGFLLGM*MLVVSH
Trigger: GTGAGAAACAACCAGCATTCACATACCCAATAGGAA...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR GCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGTCTGAATTTTTCTGCTaGCTGCAGGGCTACCTGTTT +
Preference number: 2 (lower is better)
Translates to: FEALYPFPARKLRRASVPSEFFC*LQGYLF
Trigger: AAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGA...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTTGGGTATGTGAATGCTaGTTGTTTCTCACCTTCTTT +
Preference number: 2 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTWVCEC*LFLTFF
Trigger: AAAGAAGGTGAGAAACAACCAGCATTCACATACCCA...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR CCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGAACGAAGGCCTGAATTaGAGAGGAAAACAGAAGCCT +
Preference number: 2 (lower is better)
Translates to: FEALYPFPARKLRRASVPNEGLN*RGKQKP
Trigger: AGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTT...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATATGCTATCTAATCCCATaGCCTGTTTCTCTAGCTTCC +
Preference number: 2 (lower is better)
Translates to: FATLVATSRCTLGILGFICYLIP*PVSLAS
Trigger: GGAAGCTAGAGAAACAGGCCATGGGATTAGATAGCA...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAACCTTCTTTCCTTATTaGGTGGCTATAGAAGACATG +
Preference number: 2 (lower is better)
Translates to: FATLVATSRCTLGILGFITFFPY*VAIEDM
Trigger: CATGTCTTCTATAGCCACTCAATAAGGAAAGAAGGT...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR-3UTR CCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAAGTTGCCCAAACCTCTaGGTTAATACTGGTTTCCAC +
Preference number: 2 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPSCPNL*VNTGFH
Trigger: GTGGAAACCAGTATTAACCCAGAGGTTTGGGCAACT...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR GCA 90 bp ATTGTGGTGGGGAAGAAGTCATCTGTTAAAGGGATTATTTTTAAGAGGGTTTCAAGAGGACAGCAAGCCTaGCACATTATTTATGTGAGG +
Preference number: 2 (lower is better)
Translates to: IVVGKKSSVKGIIFKRVSRGQQA*HIIYVR
Trigger: CCTCACATAAATAATGTGGCAGGCTTGCTGTCCTCT...TGAAACCCTCTTAAAAATAATCCCTTTAACAGATGACTTCTTCCCCACCACAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CCA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGAAGGTAAACAAGTATTaGGAGTCAGGGTATAAAGGT +
Preference number: 2 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGKVNKY*ESGYKG
Trigger: ACCTTTATACCCTGACTCCCAATACTTGTTTACCTT...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp AGAATCACCTGGTGCTCCCGGGTAGTAACAGCAGTCTaGGCCACTGGAGCCAGGGAGTTGAGCCCCAGGACC +
Preference number: 3 (lower is better)
Translates to: RITWCSRVVTAV*ATGARELSPRT
Trigger: GGTCCTGGGGCTCAACTCCCTGGCTCCAGTGGCTCAGACTGCTGTTACTACCCGGGAGCACCAGGTGATTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp GCCAGGGAGTTGAGCCCCAGGACCCATCAGTCCTGCTaGACCATTTGTGAGACTGGCTCTGGACTCAGTGAC +
Preference number: 3 (lower is better)
Translates to: ARELSPRTHQSC*TICETGSGLSD
Trigger: GTCACTGAGTCCAGAGCCAGTCTCACAAATGGTCCAGCAGGACTGATGGGTCCTGGGGCTCAACTCCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp ATACTGGTTTCCACTAAGGGGAGGCGGAGTTTGTCCTaGAGCCATAAGGATGGTGGCCCCCATACGTGCTGG +
Preference number: 3 (lower is better)
Translates to: ILVSTKGRRSLS*SHKDGGPHTCW
Trigger: CCAGCACGTATGGGGGCCACCATCCTTATGGCTCCAGGACAAACTCCGCCTCCCCTTAGTGGAAACCAGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp AGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATACTaGACAGGGTTGAGGTGGCTTCTTCTTGCTGCCTGG +
Preference number: 3 (lower is better)
Translates to: RTVCLPVVPIVY*TGLRWLLLAAW
Trigger: CCAGGCAGCAAGAAGAAGCCACCTCAACCCTGTCCAGTATACAATGGGGACCACTGGAAGGCAGACTGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR TCA 72 bp GCCCATCATGGTTGTGCTATGGGAGGAACGAAGGCCTaGATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTG +
Preference number: 3 (lower is better)
Translates to: AHHGCAMGGTKA*IGEENRSLAPV
Trigger: CACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGATGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp TATGCCCTGGCCAATATCTCAGATAATGCCCCCTTGTaGCAGGGGCTGTCAGTCCAGAAGTCTCCTGTTCTG +
Preference number: 3 (lower is better)
Translates to: YALANISDNAPL*QGLSVQKSPVL
Trigger: CAGAACAGGAGACTTCTGGACTGACAGCCCCTGTCACAAGGGGGCATTATCTGAGATATTGGCCAGGGCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp ATTGGAGAGGAAAACAGAAGCTGGCTCTGGACTCAGTaGCCTATGCTTCCCAGGACAGTCTGCCTTCCAGTG +
Preference number: 3 (lower is better)
Translates to: IGEENRSWLWTQ*PMLPRTVCLPV
Trigger: CACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGAGTCCAGAGCCAGCTTCTGTTTTCCTCTCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000530403.1
3UTR CCA 72 bp TCATGGTTGTGCTATGGGAGGAACGAAGGCCTGAATTaGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAG +
Preference number: 3 (lower is better)
Translates to: SWLCYGRNEGLN*RGKQKPGSSVQ
Trigger: CTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp GGACTGCAGATTCCTCTAGCAGCAAAGTCTGATACTTaGGGAGGCAGCTGTCTGTTAGCCAGAGACTCGCTT +
Preference number: 3 (lower is better)
Translates to: GLQIPLAAKSDT*GGSCLLARDSL
Trigger: AAGCGAGTCTCTGGCTAACAGACAGCTGCCTCCTCAAGTATCAGACTTTGCTGCTAGAGGAATCTGCAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp TCCCAAATCAGAGGGGCCTCAAGTGTTTTGGGACCTTaGGGCCTTCTTACTGCTGACTTAGCTCTTTGGTCT +
Preference number: 3 (lower is better)
Translates to: SQIRGASSVLGP*GLLTADLALWS
Trigger: AGACCAAAGAGCTAAGTCAGCAGTAAGAAGGCCCCAAGGTCCCAAAACACTTGAGGCCCCTCTGATTTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR GCA 72 bp AGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTaGTATCTAATCCCATGGCCTGTTTCTCTAGCTTCC +
Preference number: 3 (lower is better)
Translates to: RPRWLPSGGFVR*YLIPWPVSLAS
Trigger: GGAAGCTAGAGAAACAGGCCATGGGATTAGATAGCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR TCA 72 bp TCAAGTGCTCTTGTGAGAGGGATCAGCTCAACTGATTaGGTGTGTGTGCCTGGTGAGAGAGGCACATTTTCA +
Preference number: 3 (lower is better)
Translates to: SSALVRGISSTD*VCVPGERGTFS
Trigger: TGAAAATGTGCCTCTCTCACCAGGCACACACACTCAATCAGTTGAGCTGATCCCTCTCACAAGAGCACTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR GCA 72 bp TGGTATTTAATGCAAGACCCATTAGCGGTGAGGAAGTaGCTTTCCTTTCAGATGGCAGCATGGGCAAGGAGA +
Preference number: 3 (lower is better)
Translates to: WYLMQDPLAVRK*LSFQMAAWARR
Trigger: TCTCCTTGCCCATGCTGCCATCTGAAAGGAAAGGCACTTCCTCACCGCTAATGGGTCTTGCATTAAATACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp CGCTCAGGACAGACCCAGCAATTTGTCTTGTATAAATaGGACATGGCTGACACAGTAGAGGCTAAAGGGTGT +
Preference number: 3 (lower is better)
Translates to: RSGQTQQFVLYK*DMADTVEAKGC
Trigger: ACACCCTTTAGCCTCTACTGTGTCAGCCATGTCCCATTTATACAAGACAAATTGCTGGGTCTGTCCTGAGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CAA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAGTATACTGGACAGGGTaGAGGTGGCTTCTTCTTGCT +
Preference number: 3 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGVYWTG*RWLLLA
Trigger: AGCAAGAAGAAGCCACCTCAACCCTGTCCAGTATAC...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp ACCAAGTCATCAAGAGGTTCCTTAGTGTTACTGAACTaGGCAAACCGCTCAGGACAGACCCAGCAATTTGTC +
Preference number: 3 (lower is better)
Translates to: TKSSRGSLVLLN*ANRSGQTQQFV
Trigger: GACAAATTGCTGGGTCTGTCCTGAGCGGTTTGCTCAGTTCAGTAACACTAAGGAACCTCTTGATGACTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp AGCCTGTTTCCTTTCGCTATTTCATCTACCCGCTTCTaGTGCCCTCTGCAATGTCTGACCACTAATTCTCAT +
Preference number: 3 (lower is better)
Translates to: SLFPFAISSTRF*CPLQCLTTNSH
Trigger: ATGAGAATTAGTGGTCAGACATTGCAGAGGGCATCAGAAGCGGGTAGATGAAATAGCGAAAGGAAACAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp AAAGTGTTTTCTGGCACCAGGGAGGAAATGCTTTCCTaGGAGGAGTTAGTTACTCAGTTGAAAGTGTTCCCA +
Preference number: 3 (lower is better)
Translates to: KVFSGTREEMLS*EELVTQLKVFP
Trigger: TGGGAACACTTTCAACTGAGTAACTAACTCCTCCCAGGAAAGCATTTCCTCCCTGGTGCCAGAAAACACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR-3UTR CAA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAGTAACCTACTGGCTGTaGAGCTGGGCCTTGAACTTG +
Preference number: 3 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPVTYWL*SWALNL
Trigger: CAAGTTCAAGGCCCAGCTCAACAGCCAGTAGGTTAC...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp CTGGTGAGAGAGGCACATTTTCAATGTTATTTAGGGTaGCTACTGCATATCCCACTTTTCAGACTCCCTGTC +
Preference number: 3 (lower is better)
Translates to: LVREAHFQCYLG*LLHIPLFRLPV
Trigger: GACAGGGAGTCTGAAAAGTGGGATATGCAGTAGTCACCCTAAATAACATTGAAAATGTGCCTCTCTCACCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp ATTATGTTGTTCAAGGGGCACTGCCTCGCTTCCTATTaGGTATGTGAATGCTGGTTGTTTCTCACCTTCTTT +
Preference number: 3 (lower is better)
Translates to: IMLFKGHCLASY*VCECWLFLTFF
Trigger: AAAGAAGGTGAGAAACAACCAGCATTCACATACCCAATAGGAAGCGAGGCAGTGCCCCTTGAACAACATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR CCA 72 bp AATATCAAGTTAAAGTCTTTCCTGAGATGCCCATCATaGTTGTGCTATGGGAGGAACGAAGGCCTGAATTGG +
Preference number: 3 (lower is better)
Translates to: NIKLKSFLRCPS*LCYGRNEGLNW
Trigger: CCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGATGGGCATCTCAGGAAAGACTTTAACTTGATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CCA 72 bp GAGGAGACGCTGAATTCTGAAAGCCTCCCCTCCATATaGCTTCCAATTTTCTTAGATCATCCTTCTTATGTC +
Preference number: 3 (lower is better)
Translates to: EETLNSESLPSI*LPIFLDHPSYV
Trigger: GACATAAGAAGGATGATCTAAGAAAATTGGAAGCCATATGGAGGGGAGGCTTTCAGAATTCAGCGTCTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp AAAGACATTGAATGCCATTTATTTTGGGCATATGGGTaGAGTCTATCTGCCAGTCCTCCCCTGAGTAACTTC +
Preference number: 3 (lower is better)
Translates to: KDIECHLFWAYG*SLSASPPLSNF
Trigger: GAAGTTACTCAGGGGAGGACTGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR GCA 72 bp GCTATAGAAGACATGTTGTTCATCTCTGAATTTTTCTaGTGCCTGCAGGGCTACCTGTTTCTCTGTAGTAGT +
Preference number: 3 (lower is better)
Translates to: AIEDMLFISEFF*CLQGYLFLCSS
Trigger: ACTACTACAGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGTCTTCTATAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR GCA 72 bp AAGACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTaGAGGGCTACCTGTTTCTCTGTAGTAGTTAAGAGT +
Preference number: 3 (lower is better)
Translates to: KTCCSSLNFSAA*RATCFSVVVKS
Trigger: ACTCTTAACTACTACAGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR TCA 72 bp AGCAACATAACATCACCCCAAGTAAGGTCAAACACCTaGGTTAGGTTTTGGAAAGCCTCTATATATCTATCA +
Preference number: 3 (lower is better)
Translates to: SNITSPQVRSNT*VRFWKASIYLS
Trigger: TGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTGACCTTACTTGGGGTGATGTTATGTTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR TCA 72 bp ATCTTTGGATGCACTGATGTCTTATGCTTTCCTAAGTaGAAGGCTCAGTGGAGGATTTTAAGAATCTTCCAT +
Preference number: 3 (lower is better)
Translates to: IFGCTDVLCFPK*KAQWRILRIFH
Trigger: ATGGAAGATTCTTAAAATCCTCCACTGAGCCTTTCACTTAGGAAAGCATAAGACATCAGTGCATCCAAAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR TCA 72 bp AGCTTTCAGCAATTACAAGTATGGTGTTATAATATTTaGGATCTCCCAGGTATGGTCCTTTTCCTCTGCTTT +
Preference number: 3 (lower is better)
Translates to: SFQQLQVWCYNI*DLPGMVLFLCF
Trigger: AAAGCAGAGGAAAAGGACCATACCTGGGAGATCTCAAATATTATAACACCATACTTGTAATTGCTGAAAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACTGGACAGGGTTGAGGTaGCTTCTTCTTGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYWTGLR*LLLAAW
Trigger: CCAGGCAGCAAGAAGAAGCCACCTCAACCCTGTCCA...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACAGCAGTCTGAGCCACTaGAGCCAGGGAGTTGAGCCC +
Preference number: 4 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHSSLSH*SQGVEP
Trigger: GGGCTCAACTCCCTGGCTCCAGTGGCTCAGACTGCT...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATCCAGGCAGCCGCAGTaGGGCGTCCCCACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGSRQPQ*GVPTLQ
Trigger: CTGAAGAGTGGGGACGCCTCACTGCGGCTGCCTGGA...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp GAATTGGAGAGGAAAACAGAAGCTGGCTCTGGACTCAGTGACCTATGCTTCCCAGTGCCTTCAGAGGGGTaGCCACCACCTCACATCGGT +
Preference number: 4 (lower is better)
Translates to: ELERKTEAGSGLSDLCFPVPSEG*PPPHIG
Trigger: ACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCAC...TGGGAAGCATAGGTCACTGAGTCCAGAGCCAGCTTCTGTTTTCCTCTCCAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000530403.1
CDS-3UTR GCA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACGAACCTCGGACCATTTaGCCTCCTGTCTGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYEPRTI*PPVCRK
Trigger: TTTTCTGCAGACAGGAGGGCAAATGGTCCGAGGTTC...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACTGCCATGTGTCAGGGTaGTTACCCAGAGCCTGCCAT +
Preference number: 4 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHCHVSG*LPRACH
Trigger: ATGGCAGGCTCTGGGTAACCACCCTGACACATGGCA...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCTCCAGGCAGCCGCAGTaGGGCGTCCCCACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: VLESLYISIRSSENLPRSSRQPQ*GVPTLQ
Trigger: CTGAAGAGTGGGGACGCCTCACTGCGGCTGCCTGGA...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATACTGGGCAGTCCCTTTTaGAGTGCCCTAGTTTGCCAC +
Preference number: 4 (lower is better)
Translates to: SVTYASQDSLPSSGPHCILGSPF*SALVCH
Trigger: GTGGCAAACTAGGGCACTTCAAAAGGGACTGCCCAG...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCTCGCTCATCTACCCGCTTCTaGTGCCCTCTGCAATGTCTG +
Preference number: 4 (lower is better)
Translates to: HLRYHWGPNYVVQGALPRSSTRF*CPLQCL
Trigger: CAGACATTGCAGAGGGCATCAGAAGCGGGTAGATGA...GCGAGGCAGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCTCGCACATCGGTACTCTCCTaGTTCCTCCAGCTGGATTCC +
Preference number: 4 (lower is better)
Translates to: HLRYHWGPNYVVQGALPRTSVLS*FLQLDS
Trigger: GGAATCCAGCTGGAGGAAGCAGGAGAGTACCGATGT...GCGAGGCAGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACGCCACAACTTCAAGCTaGACTGTTCCCTGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHATTSS*TVPCAF
Trigger: GAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTGGC...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp AGAACTTGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAAGTAGTAACAGCAGTCTaGGCCACTGGAGCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: RTCPGPLLFAQGPVMKREVVTAV*ATGARE
Trigger: CTCCCTGGCTCCAGTGGCTCAGACTGCTGTTACTAC...TTCCCTTTTCATTACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGCGGCCACTTCTTCCCTaGGTTGCCCAAACCTCTGGG +
Preference number: 4 (lower is better)
Translates to: FEALYPFPARKLRRASVPRPLLP*VAQTSG
Trigger: CCCAGAGGTTTGGGCAACTCAGGGAAGAAGTGGCCG...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGCTGGACTGTTCCCTGTaGCTTCAGAGGGGTGACCAC +
Preference number: 4 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRLDCSL*LQRGDH
Trigger: GTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAG...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGAGGTGGCTTCTTCTTaGTGCCTGGGCAGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTEVASS*CLGSPF
Trigger: AAAGGGACTGCCCAGGCAGCAAGAAGAAGCCACCTC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGGACTCAGTGACCTATaGTTCCCAGGACAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTGLSDL*FPGQSA
Trigger: GGCAGACTGTCCTGGGAAGCATAGGTCACTGAGTCC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTCCTGCTTCCTCCAGCTaGATTCCAGGCAGCCGCAGT +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLPASSS*IPGSRS
Trigger: ACTGCGGCTGCCTGGAATCCAGCTGGAGGAAGCAGG...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTGTGCCTTCAGAGGGGTaGCCACCACCTCACATCGGT +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSVPSEG*PPPHIG
Trigger: ACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCAC...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGTCCCAGGGTCTTCCTaGGAGGAGTTCAGCTTCAAG +
Preference number: 4 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRVPGSS*EEFSFK
Trigger: CTTGAAGCTGAACTCCTCTCAGGAAGACCCTGGGAC...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATATCTCTAGCTTCCTTCTaGTATCAGGGGCTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: SVTYASQDSLPSSGPHCISLASF*YQGLSE
Trigger: CTCAGACAGCCCCTGATATCAGAAGGAAGCTAGAGA...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp GAATTGGAGAGGAAAACAGAAGCTGGCTCTGGACTCAGTGACCTATGCTTCCCAGGCTCCAGGTCGGAATaGCTCTTGGTGATCTCCAAA +
Preference number: 4 (lower is better)
Translates to: ELERKTEAGSGLSDLCFPGSRSE*LLVISK
Trigger: TTTGGAGATCACCAAGAGGCATTCCGACCTGGAGCC...TGGGAAGCATAGGTCACTGAGTCCAGAGCCAGCTTCTGTTTTCCTCTCCAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000530403.1
CDS-3UTR GCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTCTGGACTGTTCCCTGTaGCTTCAGAGGGGTGACCAC +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLLDCSL*LQRGDH
Trigger: GTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAG...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp GAATTGGAGAGGAAAACAGAAGCTGGCTCTGGACTCAGTGACCTATGCTTCCCAGATCCAGCAACAATCTaGTGGCTGGGGAAGCCACAA +
Preference number: 4 (lower is better)
Translates to: ELERKTEAGSGLSDLCFPDPATI*WLGKPQ
Trigger: TTGTGGCTTCCCCAGCCAGCAGATTGTTGCTGGATC...TGGGAAGCATAGGTCACTGAGTCCAGAGCCAGCTTCTGTTTTCCTCTCCAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000530403.1
CDS-3UTR GCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGAGAGGTGGCTTCTTCTTaGTGCCTGGGCAGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGEVASS*CLGSPF
Trigger: AAAGGGACTGCCCAGGCAGCAAGAAGAAGCCACCTC...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp AGAACTTGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAACAAGCATCCCTCAGCTaGTTGAGGGTTCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: RTCPGPLLFAQGPVMKREQASLS*LRVLGR
Trigger: TCTCCCCAGAACCCTCAAGCAGCTGAGGGATGCTTG...TTCCCTTTTCATTACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTACTCTTCAGCCTCCATaGAGACACAATGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTTLQPP*RHNGSR
Trigger: CCTGGAGCCATTGTGTCTCCATGGAGGCTGAAGAGT...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCACAACTTCAAGCTaGACTGTTCCCTGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTATTSS*TVPCAF
Trigger: GAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTGGC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCTCGCGAAATCTCTATGGGATaGGGAAACTTCTGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: HLRYHWGPNYVVQGALPREISMG*GNFWVC
Trigger: GCAGACCCAGAAGTTTCCCCATCCCATAGAGATTTC...GCGAGGCAGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR CAA 72 bp ATCATGGTTGTGCTATGGGAGGAACGAAGGCCTGAATaGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCA +
Preference number: 4 (lower is better)
Translates to: IMVVLWEERRPE*ERKTEAWLQCP
Trigger: TGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCTGTTGCGTAAAGAGTTaGCGGAGACACAGCCGGGAT +
Preference number: 4 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCCCVKS*RRHSRD
Trigger: ATCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACA...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACACCTTCTTTCCTTATTaGGTGGCTATAGAAGACATG +
Preference number: 4 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYTFFPY*VAIEDM
Trigger: CATGTCTTCTATAGCCACTCAATAAGGAAAGAAGGT...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTGGGTCTGGAATCCCATaGGGGTGCATGTCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSGSGIP*GCMSGK
Trigger: CTTCCCAGACATGCACCCTCATGGGATTCCAGACCC...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACGGCTCCAGGTCGGAATaGCTCTTGGTGATCTCCAAA +
Preference number: 4 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYGSRSE*LLVISK
Trigger: TTTGGAGATCACCAAGAGGCATTCCGACCTGGAGCC...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTCTCCTCAAGGGGGTATaGAAGGACGCATGCCGTACC +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSLLKGV*KDACRT
Trigger: GGTACGGCATGCGTCCTTGCATACCCCCTTGAGGAG...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp GACTCCCTGTCCTACAAAAGAGCTCCCATCCATAAAGTGGGTCCAGTCTGGATTGTTTCAGAAAGACTGTaGCGAGCAGCAGTCAGGGTA +
Preference number: 4 (lower is better)
Translates to: DSLSYKRAPIHKVGPVWIVSERL*RAAVRV
Trigger: TACCCTGACTGCTGCTCGGCACAGTCTTTCTGAAAC...AATCCAGACTGGACCCACTTTATGGATGGGAGCTCTTTTGTAGGACAGGGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGTTTCAGAAAGACTGTaGCGAGCAGCAGTCAGGGTA +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTVSERL*RAAVRV
Trigger: TACCCTGACTGCTGCTCGGCACAGTCTTTCTGAAAC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGGGACTCAGTGACCTATaGTTCCCAGGACAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: FEALYPFPARKLRRASVPGLSDL*FPGQSA
Trigger: GGCAGACTGTCCTGGGAAGCATAGGTCACTGAGTCC...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACACTTCTTCCCTGAGTTaGCCAAACCTCTGGGTTAAT +
Preference number: 4 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHTSSLS*PNLWVN
Trigger: ATTAACCCAGAGGTTTGGGCAACTCAGGGAAGAAGT...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCTCCATGGAGACACAATaGCTCCAGGTCGGAATGCCT +
Preference number: 4 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCSMETQ*LQVGMP
Trigger: AGGCATTCCGACCTGGAGCCATTGTGTCTCCATGGA...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp AGAACTTGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAATCCATGGAGACACAATaGCTCCAGGTCGGAATGCCT +
Preference number: 4 (lower is better)
Translates to: RTCPGPLLFAQGPVMKRESMETQ*LQVGMP
Trigger: AGGCATTCCGACCTGGAGCCATTGTGTCTCCATGGA...TTCCCTTTTCATTACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGAGTTGTTGATGTTGTaGCTGGAGGAGGTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTELLML*LEEVPR
Trigger: TCTGGGAACCTCCTCCAGCCACAACATCAACAACTC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CCTCGCCTAGTGCTCTTGTTCCCTTCTGACAAGACCAGACCTAGGTACTTTACCTTAAGAATCTTCCATTaGCTGGAGGCTGGCAAGCGT +
Preference number: 4 (lower is better)
Translates to: PRLVLLFPSDKTRPRYFTLRIFH*LEAGKR
Trigger: ACGCTTGCCAGCCTCCAGCCAATGGAAGATTCTTAA...GGTAAAGTACCTAGGTCTGGTCTTGTCAGAAGGGAACAAGAGCACTAGGCGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGGGGAAAGTGTTTTCTaGCACCAGGGAGGAAATGCT +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTGESVF*HQGGNA
Trigger: AGCATTTCCTCCCTGGTGCCAGAAAACACTTTCCCC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTTCTTTCATGCCCACTTaGTCCAGCAACAATCTGCTG +
Preference number: 4 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTSFMPT*SSNNLL
Trigger: CAGCAGATTGTTGCTGGATCAAGTGGGCATGAAAGA...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTGTCCCAGGGTCTTCCTaGGAGGAGTTCAGCTTCAAG +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSVPGSS*EEFSFK
Trigger: CTTGAAGCTGAACTCCTCTCAGGAAGACCCTGGGAC...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATCTCTAGCTTCCTTCTaGTATCAGGGGCTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGSLASF*YQGLSE
Trigger: CTCAGACAGCCCCTGATATCAGAAGGAAGCTAGAGA...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGCATCCCTCAGCTGCTTaGGGGTTCTGGGGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGHPSAA*GFWGEE
Trigger: TTCCTCTCCCCAGAACCCTCAAGCAGCTGAGGGATG...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGACCTAGCCTGAGGGTGTaGGGCTTATCTTTGGGGAAA +
Preference number: 4 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGPSLRV*GLSLGK
Trigger: TTTCCCCAAAGATAAGCCTCACACCCTCAGGCTAGG...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCCTAGTCTTGAACTCCTaGCCTCATCATCTACCTGCC +
Preference number: 4 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCLVLNS*PHHLPA
Trigger: GGCAGGTAGATGATGAGGTCAGGAGTTCAAGACTAG...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGTCCAGCCGGCGCTTTTaGACATCCCACTTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: FEALYPFPARKLRRASVPSSRRF*TSHFFR
Trigger: TCTGAAGAAGTGGGATGTGCAAAAGCGCCGGCTGGA...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTGATCCAGCAACAATCTaGTGGCTGGGGAAGCCACAA +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLDPATI*WLGKPQ
Trigger: TTGTGGCTTCCCCAGCCAGCAGATTGTTGCTGGATC...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTCTCCTCAAGGGGGTATaGAAGGACGCATGCCGTACC +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFLLKGV*KDACRT
Trigger: GGTACGGCATGCGTCCTTGCATACCCCCTTGAGGAG...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATAAGGTCCCCTCTTATTTaGCCAAGGTCCTGTAATGAA +
Preference number: 4 (lower is better)
Translates to: SVTYASQDSLPSSGPHCIRSPLI*PRSCNE
Trigger: TTCATTACAGGACCTTGGGCAAATAAGAGGGGACCT...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATATCTGAATTTTTCTGCTaGCTGCAGGGCTACCTGTTT +
Preference number: 4 (lower is better)
Translates to: SVTYASQDSLPSSGPHCISEFFC*LQGYLF
Trigger: AAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGA...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACCAACAATCTGCTGGCTaGGGAAGCCACAACTTCAAG +
Preference number: 4 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYQQSAG*GSHNFK
Trigger: CTTGAAGTTGTGGCTTCCCCAGCCAGCAGATTGTTG...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCGGATGGGGAAACTTCTaGGTCTGCTTCTCCCATGTT +
Preference number: 4 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCGWGNF*VCFSHV
Trigger: AACATGGGAGAAGCAGACCCAGAAGTTTCCCCATCC...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGAGGATGGGGAAACTTCTaGGTCTGCTTCTCCCATGTT +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGGWGNF*VCFSHV
Trigger: AACATGGGAGAAGCAGACCCAGAAGTTTCCCCATCC...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAATCCCCAGGGTTAACTTaGTGGCCTCTGGGACTAGCA +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKSPGLT*WPLGLA
Trigger: TGCTAGTCCCAGAGGCCACCAAGTTAACCCTGGGGA...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CCTCGCCTAGTGCTCTTGTTCCCTTCTGACAAGACCAGACCTAGGTACTTTACCGGTCAGGTTTTTAACTaGACTGCAGATTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: PRLVLLFPSDKTRPRYFTGQVFN*TADSSS
Trigger: GCTAGAGGAATCTGCAGTCCAGTTAAAAACCTGACC...GGTAAAGTACCTAGGTCTGGTCTTGTCAGAAGGGAACAAGAGCACTAGGCGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGAAGAGGCCTTTTCTGTTaGGCATGGGAATGCCTCTAC +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGRGLFC*AWECLY
Trigger: GTAGAGGCATTCCCATGCCCAACAGAAAAGGCCTCT...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTCTGCTGGACCATTTGTaGGACTGGCTCTGGACTCAG +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFLLDHL*DWLWTQ
Trigger: CTGAGTCCAGAGCCAGTCTCACAAATGGTCCAGCAG...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAACATCGGTACTCTCCTaGTTCCTCCAGCTGGATTCC +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKTSVLS*FLQLDS
Trigger: GGAATCCAGCTGGAGGAAGCAGGAGAGTACCGATGT...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACGGCCACCAGAGTCTCTaGCTTTTTCTTGTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYGHQSL*LFLVFP
Trigger: AGGAAACACAAGAAAAAGGCAGAGACTCTGGTGGCC...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGAAAGACTGGGGGCTGGTaGTTTAAGCAAGGCTTGTTT +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGKTGGW*FKQGLF
Trigger: AAACAAGCCTTGCTTAAAGCACCAGCCCCCAGTCTT...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACCAGTTAATGAAGGTATaGACCCACACCAAAAGACAT +
Preference number: 4 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHQLMKV*THTKRH
Trigger: ATGTCTTTTGGTGTGGGTGCATACCTTCATTAACTG...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAACTCTTCAGCCTCCATaGAGACACAATGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKTLQPP*RHNGSR
Trigger: CCTGGAGCCATTGTGTCTCCATGGAGGCTGAAGAGT...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTGGAGACAGGAAGGATTaGGGCATCCGGAACTGCATC +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFGDRKD*GIRNCI
Trigger: GATGCAGTTCCGGATGCCCCAATCCTTCCTGTCTCC...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp GACTCCCTGTCCTACAAAAGAGCTCCCATCCATAAAGTGGGTCCAGTCTGGATTTTTCAGATGGCAGCATaGGCAAGGAGAACTAGAAAG +
Preference number: 4 (lower is better)
Translates to: DSLSYKRAPIHKVGPVWIFQMAA*ARRTRK
Trigger: CTTTCTAGTTCTCCTTGCCCATGCTGCCATCTGAAA...AATCCAGACTGGACCCACTTTATGGATGGGAGCTCTTTTGTAGGACAGGGAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGGGCCTCAAGTGTTTTaGGACCTTGGGGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: VLESLYISIRSSENLPRSGPQVF*DLGAFL
Trigger: TAAGAAGGCCCCAAGGTCCCAAAACACTTGAGGCCC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATATCAATTCTACAACACTaGCAAAGATCTGGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: SVTYASQDSLPSSGPHCISILQH*QRSGLS
Trigger: AGACAACCCAGATCTTTGTCAGTGTTGTAGAATTGA...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAGGAGGAACGAAGGCCTaGATTGGAGAGGAAAACAGA +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIGGTKA*IGEENR
Trigger: TCTGTTTTCCTCTCCAATTCAGGCCTTCGTTCCTCC...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATATCTAGCAGCAAAGTCTaGTACTTGAGGAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFISSSKV*YLRRQL
Trigger: CAGCTGCCTCCTCAAGTATCAGACTTTGCTGCTAGA...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACAGGTCCCCTCTTATTTaGCCAAGGTCCTGTAATGAA +
Preference number: 4 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYRSPLI*PRSCNE
Trigger: TTCATTACAGGACCTTGGGCAAATAAGAGGGGACCT...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGACAGGAGGAGGCATTTaGTATTACCCGGCCAACTTT +
Preference number: 4 (lower is better)
Translates to: FEALYPFPARKLRRASVPTGGGI*YYPANF
Trigger: AAAGTTGGCCGGGTAATAGCAAATGCCTCCTCCTGT...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAACAACAATCTGCTGGCTaGGGAAGCCACAACTTCAAG +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKQQSAG*GSHNFK
Trigger: CTTGAAGTTGTGGCTTCCCCAGCCAGCAGATTGTTG...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGAGTTGTTGATGTTGTaGCTGGAGGAGGTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: VLESLYISIRSSENLPRSELLML*LEEVPR
Trigger: TCTGGGAACCTCCTCCAGCCACAACATCAACAACTC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATGCTATCTAATCCCATaGCCTGTTTCTCTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGCYLIP*PVSLAS
Trigger: GGAAGCTAGAGAAACAGGCCATGGGATTAGATAGCA...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp AGAACTTGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAACTAGCAGGTGTACCTTaGGGATACTGGGTTTTATAC +
Preference number: 4 (lower is better)
Translates to: RTCPGPLLFAQGPVMKRELAGVP*GYWVLY
Trigger: GTATAAAACCCAGTATCCCCAAGGTACACCTGCTAG...TTCCCTTTTCATTACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATACAGTCTGCCTTCCAGTaGTCCCCATTGTATACTGGA +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIQSAFQ*SPLYTG
Trigger: TCCAGTATACAATGGGGACCACTGGAAGGCAGACTG...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGAACGAAGGCCTGAATTaGAGAGGAAAACAGAAGCCT +
Preference number: 4 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRNEGLN*RGKQKP
Trigger: AGGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTT...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACAAGGTAAACAAGTATTaGGAGTCAGGGTATAAAGGT +
Preference number: 4 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHKVNKY*ESGYKG
Trigger: ACCTTTATACCCTGACTCCCAATACTTGTTTACCTT...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGCCTTTCCTTTCAGATaGCAGCATGGGCAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKAFPFR*QHGQGE
Trigger: TTCTCCTTGCCCATGCTGCCATCTGAAAGGAAAGGC...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGCTTTTCTGTTGGGCATaGGAATGCCTCTACCCAGTT +
Preference number: 4 (lower is better)
Translates to: FEALYPFPARKLRRASVPLFCWA*ECLYPV
Trigger: AACTGGGTAGAGGCATTCCCATGCCCAACAGAAAAG...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGAGGACCATTGTTGTTTTaGAAGTACTTAGGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: KEVCFTTASLSLSKKAEGGPLLF*KYLGSP
Trigger: TGGGCTCCCTAAGTACTTCCAAAACAACAATGGTCC...TCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GACTCCCTGTCCTACAAAAGAGCTCCCATCCATAAAGTGGGTCCAGTCTGGATTTGTGAGGCTTATCTTTaGGGAAAGTGTTTTCTGGCA +
Preference number: 4 (lower is better)
Translates to: DSLSYKRAPIHKVGPVWICEAYL*GKCFLA
Trigger: TGCCAGAAAACACTTTCCCCAAAGATAAGCCTCACA...AATCCAGACTGGACCCACTTTATGGATGGGAGCTCTTTTGTAGGACAGGGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTATGAGGGTGCATGTCTaGGAAGGCCTATGTGTTGTT +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLMRVHV*EGLCVV
Trigger: AACAACACATAGGCCTTCCCAGACATGCACCCTCAT...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CAA 72 bp GAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTaGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGT +
Preference number: 4 (lower is better)
Translates to: ESLYISIRSSEN*PRSPLICPRSC
Trigger: ACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCTGGGTAGAACCCACTTaGCTCACACATATATTTGTC +
Preference number: 4 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCWVEPT*LTHIFV
Trigger: GACAAATATATGTGTGAGTCAAGTGGGTTCTACCCA...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTGTTTCAGAATGCACTTaGGAGGAGTATAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLVSECT*EEYRLK
Trigger: CTTCAGCCTATACTCCTCTCAAGTGCATTCTGAAAC...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGAGTGCAAAAGAATATaGGGTGCTCTTTCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRECKRI*GALSSE
Trigger: CTCTGAAGAAAGAGCACCTCATATTCTTTTGCACTC...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp AGAACTTGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAACATGTTGTTCATCTCTaGATTTTTCTGCTGCCTGCA +
Preference number: 4 (lower is better)
Translates to: RTCPGPLLFAQGPVMKREHVVHL*IFLLPA
Trigger: TGCAGGCAGCAGAAAAATTCAGAGATGAACAACATG...TTCCCTTTTCATTACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGACTGGGCAGTCCCTTTTaGAGTGCCCTAGTTTGCCAC +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRLGSPF*SALVCH
Trigger: GTGGCAAACTAGGGCACTTCAAAAGGGACTGCCCAG...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTAGTGTGTGTGCCTGGTaGGAGAGGCACATTTTCAAT +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSSVCAW*ERHIFN
Trigger: ATTGAAAATGTGCCTCTCTCACCAGGCACACACACT...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTATCTCTGAATTTTTCTaGTGCCTGCAGGGCTACCTG +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSISEFF*CLQGYL
Trigger: CAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGAT...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAAGAGGACAGCAAGCCTaGCACATTATTTATGTGAGG +
Preference number: 4 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGRGQQA*HIIYVR
Trigger: CCTCACATAAATAATGTGGCAGGCTTGCTGTCCTCT...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATACCTCAGAAATCTCTATaGGATGGGGAAACTTCTGGG +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIPQKSL*DGETSG
Trigger: CCCAGAAGTTTCCCCATCCCATAGAGATTTCTGAGG...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAGGAGACAGGAAGGATTaGGGCATCCGGAACTGCATC +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPGDRKD*GIRNCI
Trigger: GATGCAGTTCCGGATGCCCCAATCCTTCCTGTCTCC...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAAGGAAAACAGAAGCCTaGCTCCAGTGTCCAGAAAGA +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIRKTEA*LQCPER
Trigger: TCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCT...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGCCCTTTTCTACTTTCTaGCTTCAGAGGGTATTGTCT +
Preference number: 4 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRPFSTF*LQRVLS
Trigger: AGACAATACCCTCTGAAGCCAGAAAGTAGAAAAGGG...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAATTCTCCAGTTTCCTCTaGGAGGAAAGTGTCTGGGAT +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKFSSFL*EESVWD
Trigger: ATCCCAGACACTTTCCTCCCAGAGGAAACTGGAGAA...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CCTCGCCTAGTGCTCTTGTTCCCTTCTGACAAGACCAGACCTAGGTACTTTACCTTTGTCTTGTATAAATaGGACATGGCTGACACAGTA +
Preference number: 4 (lower is better)
Translates to: PRLVLLFPSDKTRPRYFTFVLYK*DMADTV
Trigger: TACTGTGTCAGCCATGTCCCATTTATACAAGACAAA...GGTAAAGTACCTAGGTCTGGTCTTGTCAGAAGGGAACAAGAGCACTAGGCGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGCACCTGGCCGACAAATaGAGTTTCAAAAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGHLADK*SFKRPG
Trigger: CCCTGGTCTTTTGAAACTCCATTTGTCGGCCAGGTG...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CAA 72 bp ATCAAGTTAAAGTCTTTCCTGAGATGCCCATCATGGTaGTGCTATGGGAGGAACGAAGGCCTGAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: IKLKSFLRCPSW*CYGRNEGLNWR
Trigger: TCTCCAATTCAGGCCTTCGTTCCTCCCATAGCACAACCATGATGGGCATCTCAGGAAAGACTTTAACTTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTTCTTTCATGCCCACTTaGTCCAGCAACAATCTGCTG +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFSFMPT*SSNNLL
Trigger: CAGCAGATTGTTGCTGGATCAAGTGGGCATGAAAGA...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAGTTTCAGAATGCACTTaGGAGGAGTATAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIVSECT*EEYRLK
Trigger: CTTCAGCCTATACTCCTCTCAAGTGCATTCTGAAAC...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGTCAATTCTACAACACTaGCAAAGATCTGGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRSILQH*QRSGLS
Trigger: AGACAACCCAGATCTTTGTCAGTGTTGTAGAATTGA...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTAAAAAGTGGGATCCTTaGGGTGGATCCAGACTGGTA +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFKKWDP*GGSRLV
Trigger: TACCAGTCTGGATCCACCTCAAGGATCCCACTTTTT...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTGTTAACTGGGTGGTTTaGTTGGAGGGGTCTTCAAAG +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFVNWVV*LEGSSK
Trigger: CTTTGAAGACCCCTCCAATCAAACCACCCAGTTAAC...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTTATGCTTTCCTAAGTaGAAGGCTCAGTGGAGGATT +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLLCFPK*KAQWRI
Trigger: AATCCTCCACTGAGCCTTTCACTTAGGAAAGCATAA...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGGAGACGCTGAATTCTaGAAGCCTCCCCTCCATATG +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRGDAEF*KPPLHM
Trigger: CATATGGAGGGGAGGCTTTCAGAATTCAGCGTCTCC...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTTCTGAATTTTTCTGCTaGCTGCAGGGCTACCTGTTT +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSSEFFC*LQGYLF
Trigger: AAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGA...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGATCTCTGAATTTTTCTaGTGCCTGCAGGGCTACCTG +
Preference number: 4 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGISEFF*CLQGYL
Trigger: CAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGAT...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCATGGTTACCCAGAGCCTaGCATTCCCAGCAGGACTTT +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPWLPRA*HSQQDF
Trigger: AAAGTCCTGCTGGGAATGGCAGGCTCTGGGTAACCA...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAACCTCATCATCTACCTaGCTCAGCCTCCCAAAGTGC +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRTSSST*LSLPKC
Trigger: GCACTTTGGGAGGCTGAGGCAGGTAGATGATGAGGT...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTGGGTTTTATACAAAGTaGCCACCAGAGTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFGFYTK*PPESLP
Trigger: AGGCAGAGACTCTGGTGGCCACTTTGTATAAAACCC...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAAGTTGCCCAAACCTCTaGGTTAATACTGGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFISCPNL*VNTGFH
Trigger: GTGGAAACCAGTATTAACCCAGAGGTTTGGGCAACT...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGGCTGACTTAGCTCTTTaGTCTGCTAGCCTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGADLAL*SASLFP
Trigger: AGGAAACAGGCTAGCAGACCAAAGAGCTAAGTCAGC...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGAGATCTCCCAGGTATaGTCCTTTTCCTCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKEISQV*SFSSAF
Trigger: AAAAGCAGAGGAAAAGGACCATACCTGGGAGATCTC...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAAGCCTCCCCTCCATATaGCTTCCAATTTTCTTAGAT +
Preference number: 4 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGSLPSI*LPIFLD
Trigger: ATCTAAGAAAATTGGAAGCCATATGGAGGGGAGGCT...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGACACGATATGCCCTaGCCAATATCTCAGATAATG +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKGHDMP*PISQIM
Trigger: CATTATCTGAGATATTGGCCAGGGCATATCGTGTCC...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTTGGGTAGAACCCACTTaGCTCACACATATATTTGTC +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSWVEPT*LTHIFV
Trigger: GACAAATATATGTGTGAGTCAAGTGGGTTCTACCCA...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGTCCAACACCAATGAATaGAATAGGCCACCAATGAAT +
Preference number: 4 (lower is better)
Translates to: FEALYPFPARKLRRASVPSNTNE*NRPPMN
Trigger: ATTCATTGGTGGCCTATTTCATTCATTGGTGTTGGA...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATATTCCTATTGGGTATGTaGATGCTGGTTGTTTCTCAC +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIFLLGM*MLVVSH
Trigger: GTGAGAAACAACCAGCATTCACATACCCAATAGGAA...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTCAATGTTATTTAGGGTaGCTACTGCATATCCCACTT +
Preference number: 4 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLQCYLG*LLHIPL
Trigger: AAGTGGGATATGCAGTAGTCACCCTAAATAACATTG...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAGAACCTCGGACCATTTaGCCTCCTGTCTGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPEPRTI*PPVCRK
Trigger: TTTTCTGCAGACAGGAGGGCAAATGGTCCGAGGTTC...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGACTGATTGAGTGTGTGTaGCTGGTGAGAGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRLIECV*LVREAH
Trigger: ATGTGCCTCTCTCACCAGGCACACACACTCAATCAG...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTTGCTATCTAATCCCATaGCCTGTTTCTCTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFCYLIP*PVSLAS
Trigger: GGAAGCTAGAGAAACAGGCCATGGGATTAGATAGCA...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTCTAGCAGGTGTACCTTaGGGATACTGGGTTTTATAC +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFLAGVP*GYWVLY
Trigger: GTATAAAACCCAGTATCCCCAAGGTACACCTGCTAG...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
3UTR CAA 72 bp GAGGAAATGCTTTCCTGGGAGGAGTTAGTTACTCAGTaGAAAGTGTTCCCATACCATGTTCCATTTATGCCT +
Preference number: 4 (lower is better)
Translates to: EEMLSWEELVTQ*KVFPYHVPFMP
Trigger: AGGCATAAATGGAACATGGTATGGGAACACTTTCAACTGAGTAACTAACTCCTCCCAGGAAAGCATTTCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAATCCAACACCAATGAATaGAATAGGCCACCAATGAAT +
Preference number: 4 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKSNTNE*NRPPMN
Trigger: ATTCATTGGTGGCCTATTTCATTCATTGGTGTTGGA...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTCATGTTGTTCATCTCTaGATTTTTCTGCTGCCTGCA +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFHVVHL*IFLLPA
Trigger: TGCAGGCAGCAGAAAAATTCAGAGATGAACAACATG...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTTTCCTATTGGGTATGTaGATGCTGGTTGTTTCTCAC +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFFLLGM*MLVVSH
Trigger: GTGAGAAACAACCAGCATTCACATACCCAATAGGAA...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
42% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAGCAAAGTCTGATACTTaGGGAGGCAGCTGTCTGTTA +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPAKSDT*GGSCLL
Trigger: TAACAGACAGCTGCCTCCTCAAGTATCAGACTTTGC...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTTGGTGTTATAATATTTaGGATCTCCCAGGTATGGTC +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSWCYNI*DLPGMV
Trigger: GACCATACCTGGGAGATCTCAAATATTATAACACCA...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGGAAACTTCTGGGTCTaGTTCTCCCATGTTATATTA +
Preference number: 4 (lower is better)
Translates to: VLESLYISIRSSENLPRSGNFWV*FSHVIL
Trigger: TAATATAACATGGGAGAAGCAGACCCAGAAGTTTCC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGGCCACCAGAGTCTCTaGCTTTTTCTTGTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRGHQSL*LFLVFP
Trigger: AGGAAACACAAGAAAAAGGCAGAGACTCTGGTGGCC...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACAGAACAATCTTTGGATaGACTGATGTCTTATGCTTT +
Preference number: 4 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYRTIFG*TDVLCF
Trigger: AAAGCATAAGACATCAGTGCATCCAAAGATTGTTCT...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAGAAATCTCTATGGGATaGGGAAACTTCTGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPEISMG*GNFWVC
Trigger: GCAGACCCAGAAGTTTCCCCATCCCATAGAGATTTC...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGGGTTTTATACAAAGTaGCCACCAGAGTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRGFYTK*PPESLP
Trigger: AGGCAGAGACTCTGGTGGCCACTTTGTATAAAACCC...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCAAGAAACTTCCTCAGTTaGGGCACAGAGGAGAATGTC +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPRNFLS*GTEENV
Trigger: GACATTCTCCTCTGTGCCCCAACTGAGGAAGTTTCT...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
3UTR CAA 72 bp CCAGTTAATGAAGGTATGCACCCACACCAAAAGACATaGAATGCCATTTATTTTGGGCATATGGGTGAAGTC +
Preference number: 4 (lower is better)
Translates to: PVNEGMHPHQKT*NAIYFGHMGEV
Trigger: GACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTGGTGTGGGTGCATACCTTCATTAACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAGAAATAGGCCACCAATaGATGGAAAAATTATCTGTC +
Preference number: 4 (lower is better)
Translates to: FATLVATSRCTLGILGFIEIGHQ*MEKLSV
Trigger: GACAGATAATTTTTCCATTCATTGGTGGCCTATTTC...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTACCTTCTTTCCTTATTaGGTGGCTATAGAAGACATG +
Preference number: 4 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFTFFPY*VAIEDM
Trigger: CATGTCTTCTATAGCCACTCAATAAGGAAAGAAGGT...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp ATTGTGGTGGGGAAGAAGTCATCTGTTAAAGGGATTATTTTTAAGAGGGTTTCACAACTTTTCCTAGCCTaGGGGTGTGAGGCTTATCTT +
Preference number: 4 (lower is better)
Translates to: IVVGKKSSVKGIIFKRVSQLFLA*GCEAYL
Trigger: AAGATAAGCCTCACACCCTCAGGCTAGGAAAAGTTG...TGAAACCCTCTTAAAAATAATCCCTTTAACAGATGACTTCTTCCCCACCACAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGGGAAACTTCTGGGTCTaGTTCTCCCATGTTATATTA +
Preference number: 4 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGGNFWV*FSHVIL
Trigger: TAATATAACATGGGAGAAGCAGACCCAGAAGTTTCC...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp ATTGTGGTGGGGAAGAAGTCATCTGTTAAAGGGATTATTTTTAAGAGGGTTTCACCTCAGAAATCTCTATaGGATGGGGAAACTTCTGGG +
Preference number: 4 (lower is better)
Translates to: IVVGKKSSVKGIIFKRVSPQKSL*DGETSG
Trigger: CCCAGAAGTTTCCCCATCCCATAGAGATTTCTGAGG...TGAAACCCTCTTAAAAATAATCCCTTTAACAGATGACTTCTTCCCCACCACAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCATATTGCAGAATATGGTaGCATTGTCATTCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPYCRIW*HCHSGV
Trigger: CACCCCTGAATGACAATGTCACCATATTCTGCAATA...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGATATTGCAGAATATGGTaGCATTGTCATTCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRYCRIW*HCHSGV
Trigger: CACCCCTGAATGACAATGTCACCATATTCTGCAATA...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR GCA 90 bp ATAGGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTTGTTGGGCATGGGAATaGCTCTACCCAGTTAATGAA +
Preference number: 4 (lower is better)
Translates to: IGCTTVCSQLCSVSPVSSCWAWE*LYPVNE
Trigger: TTCATTAACTGGGTAGAGGCATTCCCATGCCCAACA...AGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACCTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp ACATGTTGTTCATCTCTGAATTTTTCTGCTGCCTGCAGGGCTACCTGTTTCTCTGTTTCTCAGACTTTGTaGAATTATCATCTATGGACT +
Preference number: 4 (lower is better)
Translates to: TCCSSLNFSAACRATCFSVSQTL*NYHLWT
Trigger: AGTCCATAGATGATAATTCCACAAAGTCTGAGAAAC...AGAGAAACAGGTAGCCCTGCAGGCAGCAGAAAAATTCAGAGATGAACAACATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGTTTCTCAGACTTTGTaGAATTATCATCTATGGACT +
Preference number: 4 (lower is better)
Translates to: VLESLYISIRSSENLPRSVSQTL*NYHLWT
Trigger: AGTCCATAGATGATAATTCCACAAAGTCTGAGAAAC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR TCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAAGCCTGTTGATGTCTTaGTGGTATTTAATGCAAGAC +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRSLLMS*WYLMQD
Trigger: GTCTTGCATTAAATACCATCAAGACATCAACAGGCT...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR GCA 90 bp ATAGGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTCTGGCAAGCGTACTTTaGAATCTTCTGATTGTAACC +
Preference number: 4 (lower is better)
Translates to: IGCTTVCSQLCSVSPVSSLASVL*NLLIVT
Trigger: GGTTACAATCAGAAGATTGCAAAGTACGCTTGCCAG...AGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACCTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGATTTATTTTGGGCATATaGGTGAAGTCTATCTGCCAG +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRFILGI*VKSICQ
Trigger: CTGGCAGATAGACTTCACCCATATGCCCAAAATAAA...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR TCA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAAATAGGCCACCAATaGATGGAAAAATTATCTGTC +
Preference number: 4 (lower is better)
Translates to: QTPELGFGKPLYIYQVIREIGHQ*MEKLSV
Trigger: GACAGATAATTTTTCCATTCATTGGTGGCCTATTTC...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CCA 90 bp ATAGGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTTGGGTATGTGAATGCTaGTTGTTTCTCACCTTCTTT +
Preference number: 4 (lower is better)
Translates to: IGCTTVCSQLCSVSPVSSWVCEC*LFLTFF
Trigger: AAAGAAGGTGAGAAACAACCAGCATTCACATACCCA...AGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACCTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS CCA 90 bp CTTCGGTCGTCAGCGCCCACAGCAGAATCAGGAGCGCCGCGCACGTaGAGGCGGCAGCCCTCCACGTCATCGCCGCGGCTGCTGTTGTGT +
Preference number: 5 (lower is better)
Translates to: LRSSAPTAESGAPRT*RRQPSTSSPRLLLC
Trigger: ACACAACAGCAGCCGCGGCGATGACGTGGAGGGCTGCCGCCTCCACGTGCGCGGCGCTCCTGATTCTGCTGTGGGCGCTGACGACCGAAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 90 bp GGGGTGACCACCACCTCACATCGGTACTCTCCTGCTTCCTCCAGCTaGATTCCAGGCAGCCGCAGTGAGGCGTCCCCACTCTTCAGCCTC +
Preference number: 5 (lower is better)
Translates to: GVTTTSHRYSPASSS*IPGSRSEASPLFSL
Trigger: GAGGCTGAAGAGTGGGGACGCCTCACTGCGGCTGCCTGGAATCCAGCTGGAGGAAGCAGGAGAGTACCGATGTGAGGTGGTGGTCACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 90 bp TCGGTACTCTCCTGCTTCCTCCAGCTGGATTCCAGGCAGCCGCAGTaGGGCGTCCCCACTCTTCAGCCTCCATGGAGACACAATGGCTCC +
Preference number: 5 (lower is better)
Translates to: SVLSCFLQLDSRQPQ*GVPTLQPPWRHNGS
Trigger: GGAGCCATTGTGTCTCCATGGAGGCTGAAGAGTGGGGACGCCTCACTGCGGCTGCCTGGAATCCAGCTGGAGGAAGCAGGAGAGTACCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS GCA 90 bp TCTGCTGGCTGGGGAAGCCACAACTTCAAGCTGGACTGTTCCCTGTaGCTTCAGAGGGGTGACCACCACCTCACATCGGTACTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: SAGWGSHNFKLDCSL*LQRGDHHLTSVLSC
Trigger: GCAGGAGAGTACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTGGCTTCCCCAGCCAGCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 90 bp AAGCCACAACTTCAAGCTGGACTGTTCCCTGTGCCTTCAGAGGGGTaGCCACCACCTCACATCGGTACTCTCCTGCTTCCTCCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: KPQLQAGLFPVPSEG*PPPHIGTLLLPPAG
Trigger: TCCAGCTGGAGGAAGCAGGAGAGTACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATAGGGAGACAGGAAGGATaGGGGCATCCGGAACTGCAT +
Preference number: 5 (lower is better)
Translates to: SVTYASQDSLPSSGPHCIGRQEG*GHPELH
Trigger: ATGCAGTTCCGGATGCCCCAATCCTTCCTGTCTCCC...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACGGGGTAACAGTAAAGTaGGGGGTTGGGAGGATAGAA +
Preference number: 5 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYGVTVK*GVGRIE
Trigger: TTCTATCCTCCCAACCCCCAACTTTACTGTTACCCC...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACGAACGAAGGCCTGAATaGGAGAGGAAAACAGAAGCC +
Preference number: 5 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYERRPE*ERKTEA
Trigger: GGCTTCTGTTTTCCTCTCCAATTCAGGCCTTCGTTC...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp CCTCGCCTAGTGCTCTTGTTCCCTTCTGACAAGACCAGACCTAGGTACTTTACCCTGTTGCGTAAAGAGTaGACGGAGACACAGCCGGGA +
Preference number: 5 (lower is better)
Translates to: PRLVLLFPSDKTRPRYFTLLRKE*TETQPG
Trigger: TCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACAG...GGTAAAGTACCTAGGTCTGGTCTTGTCAGAAGGGAACAAGAGCACTAGGCGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACCTCTTTCATGCCCACTaGATCCAGCAACAATCTGCT +
Preference number: 5 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYLFHAH*IQQQSA
Trigger: AGCAGATTGTTGCTGGATCAAGTGGGCATGAAAGAG...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGACTGGAGCCAGGGAGTaGAGCCCCAGGACCCATCAG +
Preference number: 5 (lower is better)
Translates to: FEALYPFPARKLRRASVPTGARE*SPRTHQ
Trigger: CTGATGGGTCCTGGGGCTCAACTCCCTGGCTCCAGT...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp CTCCTTCCCCTGGGCCTCCTCCTGGTCCCTATTATAAAAGACCGAGGTGGCTACCAGAATATGGTGACATaGTCATTCAGGGGTGTGATC +
Preference number: 5 (lower is better)
Translates to: LLPLGLLLVPIIKDRGGYQNMVT*SFRGVI
Trigger: GATCACACCCCTGAATGACAATGTCACCATATTCTG...GTAGCCACCTCGGTCTTTTATAATAGGGACCAGGAGGAGGCCCAGGGGAAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCTCGCGTGCCATCCATATTCTaGATGGTGGGACCAGTGATG +
Preference number: 5 (lower is better)
Translates to: HLRYHWGPNYVVQGALPRVPSIF*MVGPVM
Trigger: CATCACTGGTCCCACCATCAAGAATATGGATGGCAC...GCGAGGCAGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCCTCGCCAAGGCAAAGAAGGCTaGCACATAAGGAACCTCGGA +
Preference number: 5 (lower is better)
Translates to: HLRYHWGPNYVVQGALPRQGKEG*HIRNLG
Trigger: TCCGAGGTTCCTTATGTGCAAGCCTTCTTTGCCTTG...GCGAGGCAGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GGGCTGTCAGTCCAGAAGTCTCCTGTTCTGTTCACCCACAGATTTGTAGGCCACGTATACTGGACAGGGTaGAGGTGGCTTCTTCTTGCT +
Preference number: 5 (lower is better)
Translates to: GLSVQKSPVLFTHRFVGHVYWTG*RWLLLA
Trigger: AGCAAGAAGAAGCCACCTCAACCCTGTCCAGTATAC...GTGGCCTACAAATCTGTGGGTGAACAGAACAGGAGACTTCTGGACTGACAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp AGAACTTGCCCAGGTCCCCTCTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAAAGGGGGAGACCTCTGTaGCGTAAAGAGTTGACGGAG +
Preference number: 5 (lower is better)
Translates to: RTCPGPLLFAQGPVMKRERGRPL*RKELTE
Trigger: CTCCGTCAACTCTTTACGCAACAGAGGTCTCCCCCT...TTCCCTTTTCATTACAGGACCTTGGGCAAATAAGAGGGGACCTGGGCAAGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp ACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGCAGTCAGGGTAAAGTaGCTCCTCAAGGGGGTATGC +
Preference number: 5 (lower is better)
Translates to: TRKCVSLQPLSAFPKRLRAVRVK*LLKGVC
Trigger: GCATACCCCCTTGAGGAGCAACTTTACCCTGACTGC...CCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GCCATAAGGATGGTGGCCCCCATACGTGCTGGAATATCTCTATCTAATAAAGGAGGGGCCTCAAGTGTTTaGGGACCTTGGGGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: AIRMVAPIRAGISLSNKGGASSV*GPWGLL
Trigger: AAGAAGGCCCCAAGGTCCCAAAACACTTGAGGCCCC...TCCTTTATTAGATAGAGATATTCCAGCACGTATGGGGGCCACCATCCTTATGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTGCAGTCAGGGTAAAGTaGCTCCTCAAGGGGGTATGC +
Preference number: 5 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLAVRVK*LLKGVC
Trigger: GCATACCCCCTTGAGGAGCAACTTTACCCTGACTGC...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGGGAGACAGGAAGGATaGGGGCATCCGGAACTGCAT +
Preference number: 5 (lower is better)
Translates to: VLESLYISIRSSENLPRSGRQEG*GHPELH
Trigger: ATGCAGTTCCGGATGCCCCAATCCTTCCTGTCTCCC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GACTCCCTGTCCTACAAAAGAGCTCCCATCCATAAAGTGGGTCCAGTCTGGATTCGGGGTTTCACCATATaGTCCAGGCTAGTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: DSLSYKRAPIHKVGPVWIRGFTI*SRLVLN
Trigger: GTTCAAGACTAGCCTGGACAATATGGTGAAACCCCG...AATCCAGACTGGACCCACTTTATGGATGGGAGCTCTTTTGTAGGACAGGGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGTGTTCCCTAGGGGTTaGTTTCTCAGACTTTGTGGA +
Preference number: 5 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTVFPRG*FLRLCG
Trigger: TCCACAAAGTCTGAGAAACAAACCCCTAGGGAACAC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTGCTGGCAAGCGTACTTaGCAATCTTCTGATTGTAAC +
Preference number: 5 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTAGKRT*QSSDCN
Trigger: GTTACAATCAGAAGATTGCAAAGTACGCTTGCCAGC...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp GGTCCCTATTATAAAAGACCGAGGTGGCTACCTTCAGGAGGTTTTGTAAGGTGCGTAACTTCCCATCCTTaGATTGTGGTGGGGAAGAAG +
Preference number: 5 (lower is better)
Translates to: GPYYKRPRWLPSGGFVRCVTSHP*IVVGKK
Trigger: CTTCTTCCCCACCACAATCAAAGGATGGGAAGTTAC...GCACCTTACAAAACCTCCTGAAGGTAGCCACCTCGGTCTTTTATAATAGGGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 90 bp TTGCCTGATGTAACTGTTAGGAGAGCAGGGTCAATTCTACAACACTaGCAAAGATCTGGGTTGTCTCGCAAGGCAAAGAAGGCTTGCACA +
Preference number: 5 (lower is better)
Translates to: LPDVTVRRAGSILQH*QRSGLSRKAKKACT
Trigger: TGTGCAAGCCTTCTTTGCCTTGCGAGACAACCCAGATCTTTGTCAGTGTTGTAGAATTGACCCTGCTCTCCTAACAGTTACATCAGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TCAGTGACCTATGCTTCCCAGGACAGTCTGCCTTCCAGTGGTCCCCATTGTATAAAGACTTTGACTTCTTaGTCAAACGTCAGACTCTTC +
Preference number: 5 (lower is better)
Translates to: SVTYASQDSLPSSGPHCIKTLTS*SNVRLF
Trigger: GAAGAGTCTGACGTTTGACAAAGAAGTCAAAGTCTT...TATACAATGGGGACCACTGGAAGGCAGACTGTCCTGGGAAGCATAGGTCACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGCTCTTTCATGCCCACTaGATCCAGCAACAATCTGCT +
Preference number: 5 (lower is better)
Translates to: FEALYPFPARKLRRASVPLFHAH*IQQQSA
Trigger: AGCAGATTGTTGCTGGATCAAGTGGGCATGAAAGAG...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATACAAGGCAAAGAAGGCTaGCACATAAGGAACCTCGGA +
Preference number: 5 (lower is better)
Translates to: FATLVATSRCTLGILGFIQGKEG*HIRNLG
Trigger: TCCGAGGTTCCTTATGTGCAAGCCTTCTTTGCCTTG...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGAGGATAGAACTGGAGTaGTTGATGTTGTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: FEALYPFPARKLRRASVPRIELE*LMLWLE
Trigger: CTCCAGCCACAACATCAACAACTCCAGTTCTATCCT...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp ACATACCTAACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTAGGATAGAACTGGAGTaGTTGATGTTGTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: TYLTGDKEVCFTTASLSLRIELE*LMLWLE
Trigger: CTCCAGCCACAACATCAACAACTCCAGTTCTATCCT...AAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTTAGGTATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGGGGTAACAGTAAAGTaGGGGGTTGGGAGGATAGAA +
Preference number: 5 (lower is better)
Translates to: VLESLYISIRSSENLPRSGVTVK*GVGRIE
Trigger: TTCTATCCTCCCAACCCCCAACTTTACTGTTACCCC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCGTATACTGGACAGGGTaGAGGTGGCTTCTTCTTGCT +
Preference number: 5 (lower is better)
Translates to: VLESLYISIRSSENLPRSVYWTG*RWLLLA
Trigger: AGCAAGAAGAAGCCACCTCAACCCTGTCCAGTATAC...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAATCTAGGGGAATTTCTTaGAGATCCTCCCTAGCGGCA +
Preference number: 5 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKSRGIS*RSSLAA
Trigger: TGCCGCTAGGGAGGATCTCAAAGAAATTCCCCTAGA...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 90 bp ACCTCGGACCATTTGCCCTCCTGTCTGCAGAAAACATCTAGTTGTTaGATAGTATTAATATTAACACTTCCCTCAGGAGGCCAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: TSDHLPSCLQKTSSC*IVLILTLPSGGQAS
Trigger: GGAGGCTTGGCCTCCTGAGGGAAGTGTTAATATTAATACTATTCAACAACTAGATGTTTTCTGCAGACAGGAGGGCAAATGGTCCGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCATTCCAGCCGGCGCTTTaGCACATCCCACTTCTTCAG +
Preference number: 5 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPFQPAL*HIPLLQ
Trigger: CTGAAGAAGTGGGATGTGCAAAAGCGCCGGCTGGAA...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp GTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGAACTTGCCCAGGTCCATAGAACTGGAGTTGTaGATGTTGTGGCTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: VLESLYISIRSSENLPRSIELEL*MLWLEE
Trigger: CTCCTCCAGCCACAACATCAACAACTCCAGTTCTAT...GGACCTGGGCAAGTTCTCTGATGACCTGATAGATATATAGAGGCTTTCCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp TTTGCCACATTGGTAGCAACTAGCAGGTGTACCTTGGGGATACTGGGTTTTATAAAGAAACTTCCTCAGTaGGGGCACAGAGGAGAATGT +
Preference number: 5 (lower is better)
Translates to: FATLVATSRCTLGILGFIKKLPQ*GHRGEC
Trigger: ACATTCTCCTCTGTGCCCCAACTGAGGAAGTTTCTT...TATAAAACCCAGTATCCCCAAGGTACACCTGCTAGTTGCTACCAATGTGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp TGCCACTCATCTAAGGTACCACTGGGGTCCGAATTATGTTGTTCAAGGGGCACTCCACACCAAAAGACATaGAATGCCATTTATTTTGGG +
Preference number: 5 (lower is better)
Translates to: CHSSKVPLGSELCCSRGTPHQKT*NAIYFG
Trigger: CCCAAAATAAATGGCATTCAATGTCTTTTGGTGTGG...AGTGCCCCTTGAACAACATAATTCGGACCCCAGTGGTACCTTAGATGAGTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp CTGAATTGGAGAGGAAAACAGAAGCCTGGCTCCAGTGTCCAGAAAGAAGTCTACAAGACTTTGACTTCTTaGTCAAACGTCAGACTCTTC +
Preference number: 5 (lower is better)
Translates to: LNWRGKQKPGSSVQKEVYKTLTS*SNVRLF
Trigger: GAAGAGTCTGACGTTTGACAAAGAAGTCAAAGTCTT...GTAGACTTCTTTCTGGACACTGGAGCCAGGCTTCTGTTTTCCTCTCCAATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp TTTGAAGCCTTATATCCCTTTCCAGCTAGGAAATTAAGGAGAGCCTCAGTGCCGCTGGGTAGAACCCACTaGACTCACACATATATTTGT +
Preference number: 5 (lower is better)
Translates to: FEALYPFPARKLRRASVPLGRTH*THTYIC
Trigger: ACAAATATATGTGTGAGTCAAGTGGGTTCTACCCAG...CGGCACTGAGGCTCTCCTTAATTTCCTAGCTGGAAAGGGATATAAGGCTTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTGTGTTCCCTAGGGGTTaGTTTCTCAGACTTTGTGGA +
Preference number: 5 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFVFPRG*FLRLCG
Trigger: TCCACAAAGTCTGAGAAACAAACCCCTAGGGAACAC...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp ATAGGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTCCTCGCCTAGTGCTCTaGTTCCCTTCTGACAAGACC +
Preference number: 5 (lower is better)
Translates to: IGCTTVCSQLCSVSPVSSPRLVL*FPSDKT
Trigger: GGTCTTGTCAGAAGGGAACAAGAGCACTAGGCGAGG...AGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp AACAGGAGACAAGGAAGTGTGTTTCACTACAGCCTCTCTCAGCCTTTCCAAAAACGTGATGTTGAGGGGTaGGGAATAAAAGATATTGCA +
Preference number: 5 (lower is better)
Translates to: NRRQGSVFHYSLSQPFQKRDVEG*GIKDIA
Trigger: TGCAATATCTTTTATTCCCAACCCCTCAACATCACG...TTTTTGGAAAGGCTGAGAGAGGCTGTAGTGAAACACACTTCCTTGTCTCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGAGTGCCATCCATATTCTaGATGGTGGGACCAGTGATG +
Preference number: 5 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRVPSIF*MVGPVM
Trigger: CATCACTGGTCCCACCATCAAGAATATGGATGGCAC...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp ATAGGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGTAACCTACTGGCTGTaGAGCTGGGCCTTGAACTTG +
Preference number: 5 (lower is better)
Translates to: IGCTTVCSQLCSVSPVSSVTYWL*SWALNL
Trigger: CAAGTTCAAGGCCCAGCTCAACAGCCAGTAGGTTAC...AGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp CTACAGCCTCTCTCAGCCTTTCCAAAAAGGCTGAGGGATTTTCATCTAGTTTTTCTGGGTAGAACCCACTaGACTCACACATATATTTGT +
Preference number: 5 (lower is better)
Translates to: LQPLSAFPKRLRDFHLVFLGRTH*THTYIC
Trigger: ACAAATATATGTGTGAGTCAAGTGGGTTCTACCCAG...AAAAACTAGATGAAAATCCCTCAGCCTTTTTGGAAAGGCTGAGAGAGGCTGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp GGTTGTACTACAGTCTGTTCACAATTATGTTCAGTTTCTCCAGTTTCCTCTGGGGACAGACCCAGCAATTaGTCTTGTATAAATGGGACA +
Preference number: 5 (lower is better)
Translates to: GCTTVCSQLCSVSPVSSGDRPSN*SCINGT
Trigger: TGTCCCATTTATACAAGACAAATTGCTGGGTCTGTC...CCCAGAGGAAACTGGAGAAACTGAACATAATTGTGAACAGACTGTAGTACAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 90 bp CTGCTTCTCCCATGTTATATTAATAGCCTCTGGGTAGAACCCACTTaGCTCACACATATATTTGTCTTCATTCTCTTTCATGCCCACTTG +
Preference number: 5 (lower is better)
Translates to: LLLPCYINSLWVEPT*LTHIFVFILFHAHL
Trigger: CAAGTGGGCATGAAAGAGAATGAAGACAAATATATGTGTGAGTCAAGTGGGTTCTACCCAGAGGCTATTAATATAACATGGGAGAAGCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CAAACACCTGAGTTAGGTTTTGGAAAGCCTCTATATATCTATCAGGTCATCAGACAGAATATGGTGACATaGTCATTCAGGGGTGTGATC +
Preference number: 5 (lower is better)
Translates to: QTPELGFGKPLYIYQVIRQNMVT*SFRGVI
Trigger: GATCACACCCCTGAATGACAATGTCACCATATTCTG...TCTGATGACCTGATAGATATATAGAGGCTTTCCAAAACCTAACTCAGGTGTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp ATTGTGGTGGGGAAGAAGTCATCTGTTAAAGGGATTATTTTTAAGAGGGTTTCAATAGAACTGGAGTTGTaGATGTTGTGGCTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: IVVGKKSSVKGIIFKRVSIELEL*MLWLEE
Trigger: CTCCTCCAGCCACAACATCAACAACTCCAGTTCTAT...TGAAACCCTCTTAAAAATAATCCCTTTAACAGATGACTTCTTCCCCACCACAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 90 bp TCAGAGTCTGAGTGTCAAAGGAGTTCCAGTGTTTCAGAATGCACTTaGGAGGAGTATAGGCTGAAGATGATTTGTTACATATCTTTTTCC +
Preference number: 5 (lower is better)
Translates to: SESECQRSSSVSECT*EEYRLKMICYISFS
Trigger: GGAAAAAGATATGTAACAAATCATCTTCAGCCTATACTCCTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACTCAGACTCTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS-3UTR CAA 90 bp CAAAAGACATTGAATGCCATTTATTTTGGGCATATGGGTGAAGTCTATCTGCCACGTGATGTTGAGGGGTaGGGAATAAAAGATATTGCA +
Preference number: 5 (lower is better)
Translates to: QKTLNAIYFGHMGEVYLPRDVEG*GIKDIA
Trigger: TGCAATATCTTTTATTCCCAACCCCTCAACATCACG...TGGCAGATAGACTTCACCCATATGCCCAAAATAAATGGCATTCAATGTCTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS-3UTR CAA 90 bp ATTGTGGTGGGGAAGAAGTCATCTGTTAAAGGGATTATTTTTAAGAGGGTTTCAACCCAGCAATTTGTCTaGTATAAATGGGACATGGCT +
Preference number: 5 (lower is better)
Translates to: IVVGKKSSVKGIIFKRVSTQQFV*YKWDMA
Trigger: AGCCATGTCCCATTTATACAAGACAAATTGCTGGGT...TGAAACCCTCTTAAAAATAATCCCTTTAACAGATGACTTCTTCCCCACCACAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 90 bp ATTAATAAAACCAGTCCAACACCAATGAATGAAATAGGCCACCAATaGATGGAAAAATTATCTGTCTTCTCAGTTTCAGAAAGACTGTGC +
Preference number: 5 (lower is better)
Translates to: INKTSPTPMNEIGHQ*MEKLSVFSVSERLC
Trigger: GCACAGTCTTTCTGAAACTGAGAAGACAGATAATTTTTCCATTCATTGGTGGCCTATTTCATTCATTGGTGTTGGACTGGTTTTATTAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp TCAGCGCCCACAGCAGAATCAGGAGCGCCGCGCACGTaGAGGCGGCAGCCCTCCACGTCATCGCCGCGGCTG +
Preference number: 6 (lower is better)
Translates to: SAPTAESGAPRT*RRQPSTSSPRL
Trigger: CAGCCGCGGCGATGACGTGGAGGGCTGCCGCCTCCACGTGCGCGGCGCTCCTGATTCTGCTGTGGGCGCTGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 90 bp GGAGCAGGCGGCCCGGTAGAAACCAAGGGCAGGGGGAGACCTCTGTaGCGTAAAGAGTTGACGGAGACACAGCCGGGATTTCCAGCCGGC +
Preference number: 6 (lower is better)
Translates to: GAGGPVETKGRGRPL*RKELTETQPGFPAG
Trigger: GCCGGCTGGAAATCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACAGAGGTCTCCCCCTGCCCTTGGTTTCTACCGGGCCGCCTGCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 72 bp TCCTGCTTCCTCCAGCTGGATTCCAGGCAGCCGCAGTaGGGCGTCCCCACTCTTCAGCCTCCATGGAGACAC +
Preference number: 6 (lower is better)
Translates to: SCFLQLDSRQPQ*GVPTLQPPWRH
Trigger: GTGTCTCCATGGAGGCTGAAGAGTGGGGACGCCTCACTGCGGCTGCCTGGAATCCAGCTGGAGGAAGCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp ACCACCTCACATCGGTACTCTCCTGCTTCCTCCAGCTaGATTCCAGGCAGCCGCAGTGAGGCGTCCCCACTC +
Preference number: 6 (lower is better)
Translates to: TTSHRYSPASSS*IPGSRSEASPL
Trigger: GAGTGGGGACGCCTCACTGCGGCTGCCTGGAATCCAGCTGGAGGAAGCAGGAGAGTACCGATGTGAGGTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 72 bp CCAAGGGCAGGGGGAGACCTCTGTTGCGTAAAGAGTTaGCGGAGACACAGCCGGGATTTCCAGCCGGCGCTT +
Preference number: 6 (lower is better)
Translates to: PRAGGDLCCVKS*RRHSRDFQPAL
Trigger: AAGCGCCGGCTGGAAATCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACAGAGGTCTCCCCCTGCCCTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS CAA 72 bp ACCAAGGGCAGGGGGAGACCTCTGTTGCGTAAAGAGTaGACGGAGACACAGCCGGGATTTCCAGCCGGCGCT +
Preference number: 6 (lower is better)
Translates to: TKGRGRPLLRKE*TETQPGFPAGA
Trigger: AGCGCCGGCTGGAAATCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACAGAGGTCTCCCCCTGCCCTTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS CAA 90 bp CCGGTAGAAACCAAGGGCAGGGGGAGACCTCTGTTGCGTAAAGAGTaGACGGAGACACAGCCGGGATTTCCAGCCGGCGCTTTTGCACAT +
Preference number: 6 (lower is better)
Translates to: PVETKGRGRPLLRKE*TETQPGFPAGAFAH
Trigger: ATGTGCAAAAGCGCCGGCTGGAAATCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACAGAGGTCTCCCCCTGCCCTTGGTTTCTACCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS GCA 72 bp GACGGAGACACAGCCGGGATTTCCAGCCGGCGCTTTTaGACATCCCACTTCTTCAGATCCCTTCGGCAACTG +
Preference number: 6 (lower is better)
Translates to: DGDTAGISSRRF*TSHFFRSLRQL
Trigger: CAGTTGCCGAAGGGATCTGAAGAAGTGGGATGTGCAAAAGCGCCGGCTGGAAATCCCGGCTGTGTCTCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS CCA 72 bp TGGAGGAGGTTCCCAGATAGGGGAGACAGGAAGGATTaGGGCATCCGGAACTGCATCCGAGTGTTCCCTAGG +
Preference number: 6 (lower is better)
Translates to: WRRFPDRGDRKD*GIRNCIRVFPR
Trigger: CCTAGGGAACACTCGGATGCAGTTCCGGATGCCCCAATCCTTCCTGTCTCCCCTATCTGGGAACCTCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 72 bp GGCCCGGTAGAAACCAAGGGCAGGGGGAGACCTCTGTaGCGTAAAGAGTTGACGGAGACACAGCCGGGATTT +
Preference number: 6 (lower is better)
Translates to: GPVETKGRGRPL*RKELTETQPGF
Trigger: AAATCCCGGCTGTGTCTCCGTCAACTCTTTACGCAACAGAGGTCTCCCCCTGCCCTTGGTTTCTACCGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338965.9
CDS TCA 72 bp CTTCAAGCTGGACTGTTCCCTGTGCCTTCAGAGGGGTaGCCACCACCTCACATCGGTACTCTCCTGCTTCCT +
Preference number: 6 (lower is better)
Translates to: LQAGLFPVPSEG*PPPHIGTLLLP
Trigger: AGGAAGCAGGAGAGTACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAGCTTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS GCA 72 bp TGGGGAAGCCACAACTTCAAGCTGGACTGTTCCCTGTaGCTTCAGAGGGGTGACCACCACCTCACATCGGTA +
Preference number: 6 (lower is better)
Translates to: WGSHNFKLDCSL*LQRGDHHLTSV
Trigger: TACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTGGCTTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp AGGCGTCCCCACTCTTCAGCCTCCATGGAGACACAATaGCTCCAGGTCGGAATGCCTCTTGGTGATCTCCAA +
Preference number: 6 (lower is better)
Translates to: RRPHSSASMETQ*LQVGMPLGDLQ
Trigger: TTGGAGATCACCAAGAGGCATTCCGACCTGGAGCCATTGTGTCTCCATGGAGGCTGAAGAGTGGGGACGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp AACAATCTGCTGGCTGGGGAAGCCACAACTTCAAGCTaGACTGTTCCCTGTGCCTTCAGAGGGGTGACCACC +
Preference number: 6 (lower is better)
Translates to: NNLLAGEATTSS*TVPCAFRGVTT
Trigger: GGTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTGGCTTCCCCAGCCAGCAGATTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 72 bp TCAGAAAGACTGTGCCGAGCAGCAGTCAGGGTAAAGTaGCTCCTCAAGGGGGTATGCAAGGACGCATGCCGT +
Preference number: 6 (lower is better)
Translates to: SERLCRAAVRVK*LLKGVCKDACR
Trigger: ACGGCATGCGTCCTTGCATACCCCCTTGAGGAGCAACTTTACCCTGACTGCTGCTCGGCACAGTCTTTCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS GCA 72 bp CCAAGCCTCCCCATCCTGCAGCTGGTAAGACGGCCATaGCCGAGTGCAAAAGAATATGAGGTGCTCTTTCTT +
Preference number: 6 (lower is better)
Translates to: PSLPILQLVRRP*PSAKEYEVLFL
Trigger: AAGAAAGAGCACCTCATATTCTTTTGCACTCGGGCATGGCCGTCTTACCAGCTGCAGGATGGGGAGGCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 90 bp TTCTCAGTTTCAGAAAGACTGTGCCGAGCAGCAGTCAGGGTAAAGTaGCTCCTCAAGGGGGTATGCAAGGACGCATGCCGTACCACACAC +
Preference number: 6 (lower is better)
Translates to: FSVSERLCRAAVRVK*LLKGVCKDACRTTH
Trigger: GTGTGTGGTACGGCATGCGTCCTTGCATACCCCCTTGAGGAGCAACTTTACCCTGACTGCTGCTCGGCACAGTCTTTCTGAAACTGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS GCA 72 bp CATTCTCTTTCATGCCCACTTGATCCAGCAACAATCTaGTGGCTGGGGAAGCCACAACTTCAAGCTGGACTG +
Preference number: 6 (lower is better)
Translates to: HSLSCPLDPATI*WLGKPQLQAGL
Trigger: CAGTCCAGCTTGAAGTTGTGGCTTCCCCAGCCAGCAGATTGTTGCTGGATCAAGTGGGCATGAAAGAGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 72 bp GCTGGTAAGACGGCCATGCCCGAGTGCAAAAGAATATaGGGTGCTCTTTCTTCAGAGTCTGAGTGTCAAAGG +
Preference number: 6 (lower is better)
Translates to: AGKTAMPECKRI*GALSSESECQR
Trigger: CCTTTGACACTCAGACTCTGAAGAAAGAGCACCTCATATTCTTTTGCACTCGGGCATGGCCGTCTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp CTTATTTGCCCAAGGTCCTGTAATGAAAAGGGAACTTaGACCCTAGTGGCACCAGGTCCATCAGGCATTTAC +
Preference number: 6 (lower is better)
Translates to: LICPRSCNEKGT*TLVAPGPSGIY
Trigger: GTAAATGCCTGATGGACCTGGTGCCACTAGGGTCCAAGTTCCCTTTTCATTACAGGACCTTGGGCAAATAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp GAGAGCAGGGTCAATTCTACAACACTGACAAAGATCTaGGTTGTCTCGCAAGGCAAAGAAGGCTTGCACATA +
Preference number: 6 (lower is better)
Translates to: ESRVNSTTLTKI*VVSQGKEGLHI
Trigger: TATGTGCAAGCCTTCTTTGCCTTGCGAGACAACCCAGATCTTTGTCAGTGTTGTAGAATTGACCCTGCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 72 bp GGCATCCGGAACTGCATCCGAGTGTTCCCTAGGGGTTaGTTTCTCAGACTTTGTGGAATTATCATCTATGGA +
Preference number: 6 (lower is better)
Translates to: GIRNCIRVFPRG*FLRLCGIIIYG
Trigger: TCCATAGATGATAATTCCACAAAGTCTGAGAAACAAACCCCTAGGGAACACTCGGATGCAGTTCCGGATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 72 bp GTAACTGTTAGGAGAGCAGGGTCAATTCTACAACACTaGCAAAGATCTGGGTTGTCTCGCAAGGCAAAGAAG +
Preference number: 6 (lower is better)
Translates to: VTVRRAGSILQH*QRSGLSRKAKK
Trigger: CTTCTTTGCCTTGCGAGACAACCCAGATCTTTGTCAGTGTTGTAGAATTGACCCTGCTCTCCTAACAGTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS GCA 72 bp CAAAGAAGGCTTGCACATAAGGAACCTCGGACCATTTaGCCTCCTGTCTGCAGAAAACATCTAGTTGTTGAA +
Preference number: 6 (lower is better)
Translates to: QRRLAHKEPRTI*PPVCRKHLVVE
Trigger: TTCAACAACTAGATGTTTTCTGCAGACAGGAGGGCAAATGGTCCGAGGTTCCTTATGTGCAAGCCTTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 90 bp TTCAGCTTCAAGCAGCTAGTGACATTAAATGTGCCATCCATATTCTaGATGGTGGGACCAGTGATGACATCCTCAGAAATCTCTATGGGA +
Preference number: 6 (lower is better)
Translates to: FSFKQLVTLNVPSIF*MVGPVMTSSEISMG
Trigger: TCCCATAGAGATTTCTGAGGATGTCATCACTGGTCCCACCATCAAGAATATGGATGGCACATTTAATGTCACTAGCTGCTTGAAGCTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CCA 72 bp ACATCCTCAGAAATCTCTATGGGATGGGGAAACTTCTaGGTCTGCTTCTCCCATGTTATATTAATAGCCTCT +
Preference number: 6 (lower is better)
Translates to: TSSEISMGWGNF*VCFSHVILIAS
Trigger: AGAGGCTATTAATATAACATGGGAGAAGCAGACCCAGAAGTTTCCCCATCCCATAGAGATTTCTGAGGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 72 bp AAGCAGCTAGTGACATTAAATGTGCCATCCATATTCTaGATGGTGGGACCAGTGATGACATCCTCAGAAATC +
Preference number: 6 (lower is better)
Translates to: KQLVTLNVPSIF*MVGPVMTSSEI
Trigger: GATTTCTGAGGATGTCATCACTGGTCCCACCATCAAGAATATGGATGGCACATTTAATGTCACTAGCTGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 72 bp CATTTGCCCTCCTGTCTGCAGAAAACATCTAGTTGTTaGATAGTATTAATATTAACACTTCCCTCAGGAGGC +
Preference number: 6 (lower is better)
Translates to: HLPSCLQKTSSC*IVLILTLPSGG
Trigger: GCCTCCTGAGGGAAGTGTTAATATTAATACTATTCAACAACTAGATGTTTTCTGCAGACAGGAGGGCAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 72 bp AAACCAGGTGATACCCATAGACGTGATGTTGAGGGGTaGGGAATAAAAGATATTGCAGAATATGGTGACATT +
Preference number: 6 (lower is better)
Translates to: KPGDTHRRDVEG*GIKDIAEYGDI
Trigger: AATGTCACCATATTCTGCAATATCTTTTATTCCCAACCCCTCAACATCACGTCTATGGGTATCACCTGGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS CAA 72 bp TGTTTCTCAGACTTTGTGGAATTATCATCTATGGACTaGCCTGATGTAACTGTTAGGAGAGCAGGGTCAATT +
Preference number: 6 (lower is better)
Translates to: CFSDFVELSSMD*PDVTVRRAGSI
Trigger: AATTGACCCTGCTCTCCTAACAGTTACATCAGGCAAGTCCATAGATGATAATTCCACAAAGTCTGAGAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1
CDS TCA 72 bp ACCAGTCCAACACCAATGAATGAAATAGGCCACCAATaGATGGAAAAATTATCTGTCTTCTCAGTTTCAGAA +
Preference number: 6 (lower is better)
Translates to: TSPTPMNEIGHQ*MEKLSVFSVSE
Trigger: TTCTGAAACTGAGAAGACAGATAATTTTTCCATTCATTGGTGGCCTATTTCATTCATTGGTGTTGGACTGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338965.9
ENST00000530403.1