Pregenerated sensors for NCMAP-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000264443Ensembl transcript IDs: ENST00000577528.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGAAGCCTCCTGCTGGACTTCTCTACTGGACTGAGTGCCCGGGAGTaGCAGAGCCAGTCCCAAAAAGGACCCAGGAGCGGGGACACCACG | + |
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Preference number: 5 (lower is better) Translates to: GSLLLDFSTGLSARE*QSQSQKGPRSGDTT Trigger: CGTGGTGTCCCCGCTCCTGGGTCCTTTTTGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS CCA 90 bp | CCGCGGAGGAGTCCGACCTGGAAGCCTCCTGCTGGACTTCTCTACTaGACTGAGTGCCCGGGAGTGCCAGAGCCAGTCCCAAAAAGGACC | + |
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Preference number: 5 (lower is better) Translates to: PRRSPTWKPPAGLLY*TECPGVPEPVPKRT Trigger: GGTCCTTTTTGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCCAGGTCGGACTCCTCCGCGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 90 bp | AGTCCGACCTGGAAGCCTCCTGCTGGACTTCTCTACTGGACTGAGTaGCCGGGAGTGCCAGAGCCAGTCCCAAAAAGGACCCAGGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: SPTWKPPAGLLYWTE*PGVPEPVPKRTQER Trigger: CCGCTCCTGGGTCCTTTTTGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCCAGGTCGGACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS TCA 90 bp | GAGGAGTCCGACCTGGAAGCCTCCTGCTGGACTTCTCTACTGGACTaGGTGCCCGGGAGTGCCAGAGCCAGTCCCAAAAAGGACCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: EESDLEASCWTSLLD*VPGSARASPKKDPG Trigger: TCCTGGGTCCTTTTTGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCCAGGTCGGACTCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 90 bp | GCTATGGTGCGTCAGGCCCTCTGTCTACCAGGTTTCTCCCCTTTCTaGAGAGCTGTGGACCCTGTACGTACCAAACAGGTGAACTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: AMVRQALCLPGFSPF*RAVDPVRTKQVNLV Trigger: GACCAAGTTCACCTGTTTGGTACGTACAGGGTCCACAGCTCTGCAGAAAGGGGAGAAACCTGGTAGACAGAGGGCCTGACGCACCATAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 90 bp | ATCTCACACATAATTAAGCAGTGGAAAATGTGCTCAATGCTATGGTaGGTCAGGCCCTCTGTCTACCAGGTTTCTCCCCTTTCTGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: ISHIIKQWKMCSMLW*VRPSVYQVSPLSAE Trigger: CTCTGCAGAAAGGGGAGAAACCTGGTAGACAGAGGGCCTGACGCACCATAGCATTGAGCACATTTTCCACTGCTTAATTATGTGTGAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 90 bp | CTCTCACTCCGTGCTTGTAAAATTGAGTTCTATTCAAGACGGAACTaGTATGACTGGCCTATTCAAGGCTTCATATTTTTATACAGACTA | + |
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Preference number: 5 (lower is better) Translates to: LSLRACKIEFYSRRN*YDWPIQGFIFLYRL Trigger: TAGTCTGTATAAAAATATGAAGCCTTGAATAGGCCAGTCATAGCAGTTCCGTCTTGAATAGAACTCAATTTTACAAGCACGGAGTGAGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS CCA 90 bp | CGTGCTTGTAAAATTGAGTTCTATTCAAGACGGAACTGCTATGACTaGCCTATTCAAGGCTTCATATTTTTATACAGACTATTTCACAGA | + |
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Preference number: 5 (lower is better) Translates to: RACKIEFYSRRNCYD*PIQGFIFLYRLFHR Trigger: TCTGTGAAATAGTCTGTATAAAAATATGAAGCCTTGAATAGGCCAGTCATAGCAGTTCCGTCTTGAATAGAACTCAATTTTACAAGCACG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 72 bp | CTGCTGGACTTCTCTACTGGACTGAGTGCCCGGGAGTaGCAGAGCCAGTCCCAAAAAGGACCCAGGAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: LLDFSTGLSARE*QSQSQKGPRSG Trigger: CCCGCTCCTGGGTCCTTTTTGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS CCA 72 bp | AGTCCGACCTGGAAGCCTCCTGCTGGACTTCTCTACTaGACTGAGTGCCCGGGAGTGCCAGAGCCAGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: SPTWKPPAGLLY*TECPGVPEPVP Trigger: TGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCCAGGTCGGACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 72 bp | TGGAAGCCTCCTGCTGGACTTCTCTACTGGACTGAGTaGCCGGGAGTGCCAGAGCCAGTCCCAAAAAGGACC | + |
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Preference number: 6 (lower is better) Translates to: WKPPAGLLYWTE*PGVPEPVPKRT Trigger: GGTCCTTTTTGGGACTGGCTCTGGCACTCCCGGGCACTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS CCA 72 bp | CCTTTCCCTCTCTTTACCCCGCGGAGGAGTCCGACCTaGAAGCCTCCTGCTGGACTTCTCTACTGGACTGAG | + |
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Preference number: 6 (lower is better) Translates to: PFPLFTPRRSPT*KPPAGLLYWTE Trigger: CTCAGTCCAGTAGAGAAGTCCAGCAGGAGGCTTCCAGGTCGGACTCCTCCGCGGGGTAAAGAGAGGGAAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 72 bp | CGTCAGGCCCTCTGTCTACCAGGTTTCTCCCCTTTCTaGAGAGCTGTGGACCCTGTACGTACCAAACAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RQALCLPGFSPF*RAVDPVRTKQV Trigger: CACCTGTTTGGTACGTACAGGGTCCACAGCTCTGCAGAAAGGGGAGAAACCTGGTAGACAGAGGGCCTGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 72 bp | ATAATTAAGCAGTGGAAAATGTGCTCAATGCTATGGTaGGTCAGGCCCTCTGTCTACCAGGTTTCTCCCCTT | + |
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Preference number: 6 (lower is better) Translates to: IIKQWKMCSMLW*VRPSVYQVSPL Trigger: AAGGGGAGAAACCTGGTAGACAGAGGGCCTGACGCACCATAGCATTGAGCACATTTTCCACTGCTTAATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS CAA 90 bp | AGATTTGGCTTTCTTAGAGGCTCAATCACAGAGGTGAAAGTGACCTaGGAAATCATATACTCTATCCCCATGTTACACAGATTAGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: RFGFLRGSITEVKVT*EIIYSIPMLHRLEK Trigger: TTTTTCTAATCTGTGTAACATGGGGATAGAGTATATGATTTCCAAGGTCACTTTCACCTCTGTGATTGAGCCTCTAAGAAAGCCAAATCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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| CDS GCA 72 bp | CGTGCTTGTAAAATTGAGTTCTATTCAAGACGGAACTaGTATGACTGGCCTATTCAAGGCTTCATATTTTTA | + |
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Preference number: 6 (lower is better) Translates to: RACKIEFYSRRN*YDWPIQGFIFL Trigger: TAAAAATATGAAGCCTTGAATAGGCCAGTCATAGCAGTTCCGTCTTGAATAGAACTCAATTTTACAAGCACG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000577528.1 |
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