RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCK2 (Homo sapiens)

Ensembl gene IDs: ENSG00000071051

Ensembl transcript IDs: ENST00000233154.9, ENST00000393348.6, ENST00000393349.2, ENST00000425756.1, ENST00000451463.6, ENST00000522586.5

Found 321 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGCACCTGCTCTGCCCAGCACGCTGAGTGCCCAGGACACGGGCGCTaGCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCC +
Preference number: 1 (lower is better)
Translates to: RTCSAQHAECPGHGR*RWVALGSLLRSQVP
Trigger: GGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAGCAGGTGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 90 bp TGCTCTGCCCAGCACGCTGAGTGCCCAGGACACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTC +
Preference number: 1 (lower is better)
Translates to: CSAQHAECPGHGRCR*VALGSLLRSQVPCV
Trigger: GACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp CACGAGCGCCACTTCCGATGGAAAAGGAATAATGTGAACTCGCCCTaGTCCTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGT +
Preference number: 1 (lower is better)
Translates to: HERHFRWKRNNVNSP*SSPPLKLAGRVGSS
Trigger: ACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 90 bp AAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCGACCAAGCGACCTGAACATAAAGAG +
Preference number: 1 (lower is better)
Translates to: KLAGRVGSSVGVRPG*QMGDEPTKRPEHKE
Trigger: CTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACCCGGCCGGCCAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp CACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTaGACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGAGGG +
Preference number: 1 (lower is better)
Translates to: HPVVPVLLSANVSAP*TVREPCKGTGHGRG
Trigger: CCCTCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp TGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGAAT +
Preference number: 1 (lower is better)
Translates to: CRWVALGSLLRSQVP*VFLKRGSMSGNELN
Trigger: ATTCAACTCGTTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp ACTGGGCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTaGTATCAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCAT +
Preference number: 1 (lower is better)
Translates to: TGQSPHCHRTRWFQY*YQQTYRLPAQSGSH
Trigger: ATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 90 bp AGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCACCCGGTaGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAG +
Preference number: 1 (lower is better)
Translates to: SPKGTGQSPHCHRTR*FQYCYQQTYRLPAQ
Trigger: CTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 90 bp GCCTTTCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTG +
Preference number: 1 (lower is better)
Translates to: AFPGNSLLQAQPQRH*AVSSLPSHPVVPVL
Trigger: CAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp CTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTaGCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTAT +
Preference number: 1 (lower is better)
Translates to: LYCKHSPKGTGQSPH*HRTRWFQYCYQQTY
Trigger: ATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp ACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATTaGAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCAT +
Preference number: 1 (lower is better)
Translates to: TGSLFCRLPFQEILY*KHSPKGTGQSPHCH
Trigger: ATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 90 bp GCAAGTTTAGGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTaGCATCTCAAGACGTTATATTTAAACTATAAAGAAGTTCAAATG +
Preference number: 1 (lower is better)
Translates to: ASLGDLKTPSSIVGM*HLKTLYLNYKEVQM
Trigger: CATTTGAACTTCTTTATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCCTAAACTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp GCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGCGCGGGAGGAGCCTCTaGCACAAGGCCGGGCGGGCA +
Preference number: 2 (lower is better)
Translates to: AGRPGGLECGCEAWMANGRGRSL*HKAGRA
Trigger: TGCCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCG...CCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACCCGGCCGGCCAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp GAGTGCCCAGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTGGGGCCATCGCACCTaGTCTGCCCAGCACGCTGAG +
Preference number: 2 (lower is better)
Translates to: ECPGHGRCRWVALGSLLRWGHRT*SAQHAE
Trigger: CTCAGCGTGCTGGGCAGAGCAGGTGCGATGGCCCCA...GCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp GGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTC +
Preference number: 2 (lower is better)
Translates to: GTGHGRGLLGLGPSHLLCHGRCR*VALGSL
Trigger: GAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTG...GCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCGCGGGAGGAGCCTCTaGCACAAGGCCGGGCGGGCA +
Preference number: 2 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLRGRSL*HKAGRA
Trigger: TGCCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCG...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp GGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCACCAGCTCGTCCATaGTGTGGAAGCGCCGCTGCC +
Preference number: 2 (lower is better)
Translates to: GTGHGRGLLGLGPSHLLCPPARP*CGSAAA
Trigger: GGCAGCGGCGCTTCCACACCATGGACGAGCTGGTGG...GCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR-3UTR TCA 90 bp TGCTCCTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGCCCCGTGCTCGCTGGTaGAGATGGGCGCCTTTTTGT +
Preference number: 2 (lower is better)
Translates to: CSSPPLKLAGRVGSSVGVPRARW*RWAPFC
Trigger: ACAAAAAGGCGCCCATCTTCACCAGCGAGCACGGGG...CACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAGGAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR-3UTR GCA 90 bp GTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGCGACCTGAACGCGGGAGGAGCCTCTaGCACAAGGCCGGGCGGGCA +
Preference number: 2 (lower is better)
Translates to: VGVRPGWQMGDEPTKRPERGRSL*HKAGRA
Trigger: TGCCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCG...TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp CAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACCCAGGACACGGGCGCTaGCGCTGGGTGGCCTTAGGC +
Preference number: 2 (lower is better)
Translates to: QQTYRLPAQSGSHVRAQDPGHGR*RWVALG
Trigger: GCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGG...GTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGTGGGGCCATCGCACCTaGTCTGCCCAGCACGCTGAG +
Preference number: 2 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLWGHRT*SAQHAE
Trigger: CTCAGCGTGCTGGGCAGAGCAGGTGCGATGGCCCCA...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp GTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGCGACCTGAACGGGCAGCTCCACCGTaGGGCCCGGGAGGCGAGTGT +
Preference number: 2 (lower is better)
Translates to: VGVRPGWQMGDEPTKRPERAAPP*GPGGEC
Trigger: ACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCG...TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp GCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTCCAGGACACGGGCGCTaGCGCTGGGTGGCCTTAGGC +
Preference number: 2 (lower is better)
Translates to: ALGSLLRSQVPCVFLKRGPGHGR*RWVALG
Trigger: GCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGG...ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp TTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCACACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTC +
Preference number: 2 (lower is better)
Translates to: FIASTAPKALGSLLTAIAHGRCR*VALGSL
Trigger: GAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTG...TGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR TCA 90 bp GTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTACTCTGCCCAGCACGCTaGGTGCCCAGGACACGGGCG +
Preference number: 2 (lower is better)
Translates to: VSSLPSHPVVPVLLSANVLCPAR*VPRTRA
Trigger: CGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAG...TACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCCGGGCAGCTCCACCGTaGGGCCCGGGAGGCGAGTGT +
Preference number: 2 (lower is better)
Translates to: SRKFFIASTAPKALGSLLRAAPP*GPGGEC
Trigger: ACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCG...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp GTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGAGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCG +
Preference number: 2 (lower is better)
Translates to: VSAPCTVREPCKGTGHGRGVRPG*QMGDEP
Trigger: CGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACC...TCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CAA 90 bp CACTGGGCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATaGCTATCAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCA +
Preference number: 2 (lower is better)
Translates to: HWAVSSLPSHPVVPV*LSANVSAPCTVREP
Trigger: TGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR TCA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCCTCTGCCCAGCACGCTaGGTGCCCAGGACACGGGCG +
Preference number: 2 (lower is better)
Translates to: SRKFFIASTAPKALGSLLLCPAR*VPRTRA
Trigger: CGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAG...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp GCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTAGCTCGTCCATGGTGTaGAAGCGCCGCTGCCCAATG +
Preference number: 2 (lower is better)
Translates to: ALGSLLRSQVPCVFLKRGSSSMV*KRRCPM
Trigger: CATTGGGCAGCGGCGCTTCCACACCATGGACGAGCT...ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR-3UTR GCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCGGTGGTTCCAGTATTaGTATCAGCAAACGTATCGG +
Preference number: 2 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLRWFQY*YQQTYR
Trigger: CCGATACGTTTGCTGATAGCAATACTGGAACCACCG...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp CAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACCGGTGGTTCCAGTATTaGTATCAGCAAACGTATCGG +
Preference number: 2 (lower is better)
Translates to: QQTYRLPAQSGSHVRAQDRWFQY*YQQTYR
Trigger: CCGATACGTTTGCTGATAGCAATACTGGAACCACCG...GTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCAGCGCCGCTGCCCAATaGAGTAGACATTGTCCACGA +
Preference number: 2 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSSAAAQ*SRHCPR
Trigger: TCGTGGACAATGTCTACTGCATTGGGCAGCGGCGCT...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR-3UTR CCA 90 bp TCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGTGTGGGTGTGAGGCCTaGATGGCAAATGGGAGACGA +
Preference number: 2 (lower is better)
Translates to: SLLQAQPQRHWAVSSLPSCGCEA*MANGRR
Trigger: TCGTCTCCCATTTGCCATCCAGGCCTCACACCCACA...CGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR TCA 90 bp ACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAGTCCGGAAAAGGAATAATGTaGACTCGCCCTGCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: TRWFQYCYQQTYRLPAQSGKGIM*TRPAPP
Trigger: GGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCC...GGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCAATGTGAACTCGCCCTaGTCCTCCCCTCCTCTAAAG +
Preference number: 2 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSNVNSP*SSPPLK
Trigger: CTTTAGAGGAGGGGAGGAGCAGGGCGAGTTCACATT...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp TCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGT +
Preference number: 2 (lower is better)
Translates to: SLLQAQPQRHWAVSSLPSRSQVP*VFLKRG
Trigger: ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCG...CGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CAA 90 bp CACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATaGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCA +
Preference number: 2 (lower is better)
Translates to: HRFPLLQTAFPGNSL*QAQPQRHWAVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR TCA 90 bp TCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGGGAAAAGGAATAATGTaGACTCGCCCTGCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: SQVPCVFLKRGSMSGNELGKGIM*TRPAPP
Trigger: GGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCC...CAACTCGTTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp ATCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAACAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCA +
Preference number: 2 (lower is better)
Translates to: ICLSESPVPSFADCLSRKQPQRH*AVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTG...TTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp CCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAAGAGCGCCACTTCCGATaGAAAAGGAATAATGTGAAC +
Preference number: 2 (lower is better)
Translates to: PALTGALRLFKEGFHEREERHFR*KRNNVN
Trigger: GTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTC...TTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp ATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAAAAGCACTATGTGGATGGGGCCATCGCACCTaGTCTGCCCAGCACGCTGAG +
Preference number: 2 (lower is better)
Translates to: IIVRFKQAEGQEEKALCGWGHRT*SAQHAE
Trigger: CTCAGCGTGCTGGGCAGAGCAGGTGCGATGGCCCCA...TCCACATAGTGCTTTTTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp CGCCACTTCCGATGGAAAAGGAATAATGTGAACTCGCCCTGCTCCTCCCCTCCTACATTGTCCACGAGCTaGACCTTGAAGTGTTTGTTC +
Preference number: 2 (lower is better)
Translates to: RHFRWKRNNVNSPCSSPPTLSTS*TLKCLF
Trigger: GAACAAACACTTCAAGGTGCAGCTCGTGGACAATGT...AGGAGGGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCCATCGGAAGTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR-3UTR CCA 90 bp TCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAGAGCGCCACTTCCGATaGAAAAGGAATAATGTGAAC +
Preference number: 2 (lower is better)
Translates to: SHPVVPVLLSANVSAPCTERHFR*KRNNVN
Trigger: GTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTC...TGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR TCA 90 bp TGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCCCACGAGCTGCACCTTaGAGTGTTTGTTCTTCCCTG +
Preference number: 2 (lower is better)
Translates to: CLSESPVPSFADCLSRKFPRAAP*SVCSSL
Trigger: CAGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGG...GAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR-3UTR GCA 90 bp ATCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAAAATGTGAACTCGCCCTaGTCCTCCCCTCCTCTAAAG +
Preference number: 2 (lower is better)
Translates to: ICLSESPVPSFADCLSRKNVNSP*SSPPLK
Trigger: CTTTAGAGGAGGGGAGGAGCAGGGCGAGTTCACATT...TTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp TTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGAATGCACGAGCGCCACTTCCGAGCGCCACTTCCGATaGAAAAGGAATAATGTGAAC +
Preference number: 2 (lower is better)
Translates to: FKEGFHERERVECTSATSERHFR*KRNNVN
Trigger: GTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTC...GGAAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCATGGAACCCCTCTTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp AGTTTAGGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGCGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGT +
Preference number: 2 (lower is better)
Translates to: SLGDLKTPSSIVGMCHLKRSQVP*VFLKRG
Trigger: ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCG...CTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCCTAAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp AAGCACTATGTGGATGGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTGGGCAGTCTCCTCACTaGCATCGCACCCGGTGGTTC +
Preference number: 2 (lower is better)
Translates to: KHYVDGTFGVNYQNICLSGQSPH*HRTRWF
Trigger: GAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCC...AGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCCATCCACATAGTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR TCA 90 bp GGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATAGGAAAAGGAATAATGTaGACTCGCCCTGCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: GSQDPFFNRRNVPSQDVIGKGIM*TRPAPP
Trigger: GGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCC...TATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp TCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATTGCAAGCACCGGTTCCCTCTTTTaGAGACTGCCTTTCCAGGAA +
Preference number: 2 (lower is better)
Translates to: SPVPSFADCLSRKFFIASTGSLF*RLPFQE
Trigger: TTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGT...GCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp ACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATATTTAAACTATCAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCA +
Preference number: 2 (lower is better)
Translates to: TPSSIVGMCHLKTLYLNYQPQRH*AVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTG...ATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGCAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCA +
Preference number: 2 (lower is better)
Translates to: KDQLFSLIICISVNKRLQQPQRH*AVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTG...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CAA 90 bp AGTGTGTGTGTGTGTGTGTGTGCACGTGTGTGTGTGTATAAAGTGTaGGTAGCTCCCTTCCCCAAAGATCAGCTGTTTTCCTTAATCATC +
Preference number: 2 (lower is better)
Translates to: SVCVCVCARVCVYKV*VAPFPKDQLFSLII
Trigger: GATGATTAAGGAAAACAGCTGATCTTTGGGGAAGGGAGCTACCAACACTTTATACACACACACACGTGCACACACACACACACACACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp ATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAAAAGCACTATGTGGACGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGT +
Preference number: 2 (lower is better)
Translates to: IIVRFKQAEGQEEKALCGRSQVP*VFLKRG
Trigger: ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCG...TCCACATAGTGCTTTTTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR GCA 90 bp GATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGATAAACGTATCGGCTCCCTaGACAGTCCGGGAGCCATGT +
Preference number: 2 (lower is better)
Translates to: DQLFSLIICISVNKRLQINVSAP*TVREPC
Trigger: ACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTT...TATCTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCG +
Preference number: 2 (lower is better)
Translates to: KDQLFSLIICISVNKRLQGVRPG*QMGDEP
Trigger: CGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACC...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 72 bp CAGCACGCTGAGTGCCCAGGACACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTG +
Preference number: 3 (lower is better)
Translates to: QHAECPGHGRCR*VALGSLLRSQV
Trigger: CACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTCAGCGTGCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 72 bp GGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCTaGATGGCAAATGGGAGACGAACCGACCAAGCGACC +
Preference number: 3 (lower is better)
Translates to: GRPGGLECGCEA*MANGRRTDQAT
Trigger: GGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACCCGGCCGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 72 bp GGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCGACCAAGCGACCTGAA +
Preference number: 3 (lower is better)
Translates to: GRVGSSVGVRPG*QMGDEPTKRPE
Trigger: TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACCCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CAA 90 bp GTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGAATGAGCGGGAACGAGTaGAATGCACGAGCGCCACTT +
Preference number: 3 (lower is better)
Translates to: VSAPCTVREPCKGTGHGRMSGNE*NARAPL
Trigger: AAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCAT...TCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 72 bp GTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAAC +
Preference number: 3 (lower is better)
Translates to: VALGSLLRSQVP*VFLKRGSMSGN
Trigger: GTTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CAA 90 bp CAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGAGCGGGAACGAGTaGAATGCACGAGCGCCACTT +
Preference number: 3 (lower is better)
Translates to: QQTYRLPAQSGSHVRAQDMSGNE*NARAPL
Trigger: AAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCAT...GTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 72 bp AAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTaGCATCGCACCCGGTGGTTCCAGTATTGCTATCAG +
Preference number: 3 (lower is better)
Translates to: KHSPKGTGQSPH*HRTRWFQYCYQ
Trigger: CTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 72 bp TCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTaGTATCAGCAAACGTATCGGCTCCCTGCACAGTCC +
Preference number: 3 (lower is better)
Translates to: SPHCHRTRWFQY*YQQTYRLPAQS
Trigger: GGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CCA 72 bp GGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCATCGCACCCGGTGGTT +
Preference number: 3 (lower is better)
Translates to: GNSLLQAQPQRH*AVSSLPSHPVV
Trigger: AACCACCGGGTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CAA 90 bp AACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGGGGCTCCACGAGCTGCACCTaGAAGTGTTTGTTCTTCCCT +
Preference number: 3 (lower is better)
Translates to: NRPSDLNIKRDSQRSRRGSTSCT*KCLFFP
Trigger: AGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGGA...GCCCCGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451463.6
3UTR GCA 72 bp GTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTaGACAGTCCGGGAGCCATGTAAGGGCACAGGACAT +
Preference number: 3 (lower is better)
Translates to: VPVLLSANVSAP*TVREPCKGTGH
Trigger: ATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR-3UTR CAA 90 bp TGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCATGAGCGGGAACGAGTaGAATGCACGAGCGCCACTT +
Preference number: 3 (lower is better)
Translates to: CLSESPVPSFADCLSRKFMSGNE*NARAPL
Trigger: AAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCAT...GAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 72 bp CTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATTaGAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCT +
Preference number: 3 (lower is better)
Translates to: LFCRLPFQEILY*KHSPKGTGQSP
Trigger: AGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 72 bp TTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGAATaGACGAGCGCCACTTCCGATGGAAAAGGAATAATG +
Preference number: 3 (lower is better)
Translates to: FKEGFHERERVE*TSATSDGKGIM
Trigger: CATTATTCCTTTTCCATCGGAAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCATGGAACCCCTCTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR GCA 72 bp GGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTaGCATCTCAAGACGTTATATTTAAACTATAAAGAA +
Preference number: 3 (lower is better)
Translates to: GDLKTPSSIVGM*HLKTLYLNYKE
Trigger: TTCTTTATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCCACAAGGCCGGGCGGGCACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: EAVGAVPAGGASATRPGGHGRCR*VALGSL
Trigger: GAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTG...CCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCCACAAGGCCGGGCGGGCGTAGTACCACTCTCTaGCCGCGAAGCGCCCGCTGG +
Preference number: 4 (lower is better)
Translates to: EAVGAVPAGGASATRPGGRSTTL*PRSARW
Trigger: CCAGCGGGCGCTTCGCGGGCAGAGAGTGGTACTACG...CCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp CGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCCCACGCCCCGCTCGTTaGGGGCGCACTCGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: RCRWVALGSLLRSQVPCVPRPAR*GRTRPG
Trigger: ACCAGGCCGAGTGCGCCCTCAACGAGCGGGGCGTGG...GACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp CTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGAGTGTGGACGCATCCCGCGCGCTaGTCTTCCTGCGCGTCTTGC +
Preference number: 4 (lower is better)
Translates to: LPQGRAGSSTVGPGRRVWTHPAR*SSCASC
Trigger: GCAAGACGCGCAGGAAGACCAGCGCGCGGGATGCGT...CCACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp GGAGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGGCCGCTCGTTCTTCTTaGTGTCCAGCTCCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: GASATRPGGQLHRGAREAAARSS*CPAPGP
Trigger: AGGACCAGGAGCTGGACATCAAGAAGAACGAGCGGC...CGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GAGTGCCCAGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCAGCGTCTGGACCACATaGAGCACGCGGGAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: ECPGHGRCRWVALGSLLRSVWTT*STREPW
Trigger: CCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCT...GCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCGCGGGAGGAGCCTCTaGCACAAGGCCGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: GTGHGRGLLGLGPSHLLCRGRSL*HKAGRA
Trigger: TGCCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCG...GCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCAGCACGCTGAGTaGCCAGGACACGGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: RTRALPLGGLRLAPALTGAQHAE*PGHGRC
Trigger: GCAGCGCCCGTGTCCTGGGCACTCAGCGTGCTGGGC...ACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp CACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCCGGGCAGCTCCACCGTaGGGCCCGGGAGGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: HRTWARAARTGAIAPALPRAAPP*GPGGEC
Trigger: ACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCG...GGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCGCGCGCTGGTCTTCCTaGGCGTCTTGCCGAGGCCTA +
Preference number: 4 (lower is better)
Translates to: RCRWVALGSLLRSQVPCVARWSS*ASCRGL
Trigger: TAGGCCTCGGCAAGACGCGCAGGAAGACCAGCGCGC...GACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCCAAGCGTCTGGACCACATaGAGCACGCGGGAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: ERLAEKPSGPSPREEPLPSVWTT*STREPW
Trigger: CCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCT...TGGCAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp AGGAGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCG +
Preference number: 4 (lower is better)
Translates to: RSLCHKAGRAAPPWGPGGGVRPG*QMGDEP
Trigger: CGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACC...GCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGAGTGTGGCCGCTCGTTCTTCTTaGTGTCCAGCTCCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: SATRPGGQLHRGAREASVAARSS*CPAPGP
Trigger: AGGACCAGGAGCTGGACATCAAGAAGAACGAGCGGC...CACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp GGAGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGGGAAAAGGAATAATGTaGACTCGCCCTGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: GASATRPGGQLHRGAREAGKGIM*TRPAPP
Trigger: GGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCC...CGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTCGTAGTACCACTCTCTaGCCGCGAAGCGCCCGCTGG +
Preference number: 4 (lower is better)
Translates to: RTRALPLGGLRLAPALTGRSTTL*PRSARW
Trigger: CCAGCGGGCGCTTCGCGGGCAGAGAGTGGTACTACG...ACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp AGGAGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCCCTCCAAGACGTAGTTaGAGGGGAACCAGCCGATCT +
Preference number: 4 (lower is better)
Translates to: RSLCHKAGRAAPPWGPGGPPRRS*RGTSRS
Trigger: AGATCGGCTGGTTCCCCTCCAACTACGTCTTGGAGG...GCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp ACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCAGCACGAGCACGCGGGAGCCCTaGCCATTGCTCAGCGAGGCG +
Preference number: 4 (lower is better)
Translates to: TWARAARTGAIAPALPSTSTREP*PLLSEA
Trigger: CGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCT...CGTGCTGGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp GAGTGCCCAGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCCAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCA +
Preference number: 4 (lower is better)
Translates to: ECPGHGRCRWVALGSLLRQPQRH*AVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTG...GCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp AGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTCGAAGGCCGGGATGTTaGGGTCGTAGATGCGGTCGG +
Preference number: 4 (lower is better)
Translates to: RTRALPLGGLRLAPALTGRRPGC*GRRCGR
Trigger: CCGACCGCATCTACGACCTCAACATCCCGGCCTTCG...ACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp CGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCCCCCGTGCTCGCTGGTaGAGATGGGCGCCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: RCRWVALGSLLRSQVPCVPRARW*RWAPFC
Trigger: ACAAAAAGGCGCCCATCTTCACCAGCGAGCACGGGG...GACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGCCAGGACACGGGCGCTaGCGCTGGGTGGCCTTAGGC +
Preference number: 4 (lower is better)
Translates to: LNIKRDSQRSRRGRPRGRPGHGR*RWVALG
Trigger: GCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGG...CCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGGCCCAGCACGCTGAGTaGCCAGGACACGGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLAQHAE*PGHGRC
Trigger: GCAGCGCCCGTGTCCTGGGCACTCAGCGTGCTGGGC...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCTGGGGCCATCGCACCTaGTCTGCCCAGCACGCTGAG +
Preference number: 4 (lower is better)
Translates to: HRTWARAARTGAIAPALPWGHRT*SAQHAE
Trigger: CTCAGCGTGCTGGGCAGAGCAGGTGCGATGGCCCCA...GGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCATAGCCCGTCCTGTTaGCCGCGTTCCTCACCCGCC +
Preference number: 4 (lower is better)
Translates to: GTGHGRGLLGLGPSHLLCHSPSC*PRSSPA
Trigger: GGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATG...GCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGACGGGCAGCTCCACCGTaGGGCCCGGGAGGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: VSAPCTVREPCKGTGHGRRAAPP*GPGGEC
Trigger: ACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCG...TCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp AGGAGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCTCTTTGGCACACAGTTaGGAGGTGACTGGCAAAACG +
Preference number: 4 (lower is better)
Translates to: RSLCHKAGRAAPPWGPGGSLAHS*EVTGKT
Trigger: CGTTTTGCCAGTCACCTCTCAACTGTGTGCCAAAGA...GCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR TCA 90 bp GGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCGTCACTGCAGGGCCCTaGCGAGGTAGAGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: GTGHGRGLLGLGPSHLLCVTAGP*RGRASP
Trigger: GGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGAC...GCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp ACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCAGCACGTCAGCGAGGCGCCCTTaGGCAGGCTCAGGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: TWARAARTGAIAPALPSTSARRP*AGSGSL
Trigger: CAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGA...CGTGCTGGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCCAGGACACGGGCGCTaGCGCTGGGTGGCCTTAGGC +
Preference number: 4 (lower is better)
Translates to: GGLECGCEAWMANGRRTDPGHGR*RWVALG
Trigger: GCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGG...GTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGAAGGGGTACAGCGTCTaGACCACATGCAGCACGCGG +
Preference number: 4 (lower is better)
Translates to: AGRPGGLECGCEAWMANGKGYSV*TTCSTR
Trigger: CCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTT...CCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACCCGGCCGGCCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGAGTGTGTGCCATCGCACCCGGTaGTTCCAGTATTGCTATCAG +
Preference number: 4 (lower is better)
Translates to: SATRPGGQLHRGAREASVCHRTR*FQYCYQ
Trigger: CTGATAGCAATACTGGAACCACCGGGTGCGATGGCA...CACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp GCGCCGTCACTGCAGGGCCCTGACGAGGTAGAGCTTCTCCCCGTGCTCGCTGGTCCCCGTGCTCGCTGGTaGAGATGGGCGCCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: APSLQGPDEVELLPVLAGPRARW*RWAPFC
Trigger: ACAAAAAGGCGCCCATCTTCACCAGCGAGCACGGGG...ACCAGCGAGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGACGGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000451463.6
CDS-3UTR CCA 90 bp TGCTCCTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGCCACCACGTAGTTTTTaGGGACGAGGCCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: CSSPPLKLAGRVGSSVGVPPRSF*GRGPPG
Trigger: GCCAGGTGGGCCTCGTCCCCAAAAACTACGTGGTGG...CACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAGGAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp GGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGAGGGCGCACTCGGCCTaGTGCCGCGTCACGTTCCCG +
Preference number: 4 (lower is better)
Translates to: GSSVGVRPGWQMGDEPTKRAHSA*CRVTFP
Trigger: CGGGAACGTGACGCGGCACCAGGCCGAGTGCGCCCT...CTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp ACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCAGCACGAGCTCGTCCATGGTGTaGAAGCGCCGCTGCCCAATG +
Preference number: 4 (lower is better)
Translates to: TWARAARTGAIAPALPSTSSSMV*KRRCPM
Trigger: CATTGGGCAGCGGCGCTTCCACACCATGGACGAGCT...CGTGCTGGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCCACCAGCTCGTCCATaGTGTGGAAGCGCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLPPARP*CGSAAA
Trigger: GGCAGCGGCGCTTCCACACCATGGACGAGCTGGTGG...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCCACAAGGCCGGGCGGGGAGCGCCACTTCCGATaGAAAAGGAATAATGTGAAC +
Preference number: 4 (lower is better)
Translates to: EAVGAVPAGGASATRPGGERHFR*KRNNVN
Trigger: GTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTC...CCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TGCTCCTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGCAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCA +
Preference number: 4 (lower is better)
Translates to: CSSPPLKLAGRVGSSVGVQPQRH*AVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTG...CACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAGGAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp CCATGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCGAAGGCCGGGATGTTaGGGTCGTAGATGCGGTCGG +
Preference number: 4 (lower is better)
Translates to: PCKGTGHGRGLLGLGPSHRRPGC*GRRCGR
Trigger: CCGACCGCATCTACGACCTCAACATCCCGGCCTTCG...GTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp CTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAACTCTGCCCAGCACGCTaGGTGCCCAGGACACGGGCG +
Preference number: 4 (lower is better)
Translates to: LGGLRLAPALTGALRLFKLCPAR*VPRTRA
Trigger: CGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAG...TTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGCCCAGCACGCTGAGTaGCCAGGACACGGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: LGGLRLAPALTGALRLFKAQHAE*PGHGRC
Trigger: GCAGCGCCCGTGTCCTGGGCACTCAGCGTGCTGGGC...TTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAGGCTCAGGAAGCTTaGGGACTCCGCAGCCGCCTC +
Preference number: 4 (lower is better)
Translates to: GGLECGCEAWMANGRRTDQAQEA*GLRSRL
Trigger: GAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTG...GTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp AAAGAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCGGGAACGAGTTGAATaGACGAGCGCCACTTCCGAT +
Preference number: 4 (lower is better)
Translates to: KERLAEKPSGPSPREEPLRERVE*TSATSD
Trigger: ATCGGAAGTGGCGCTCGTGCATTCAACTCGTTCCCG...CAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACACGGCGCCGCTGCCATTaGCGGGGTACTCGGCGTCCG +
Preference number: 4 (lower is better)
Translates to: SHPVVPVLLSANVSAPCTRRRCH*RGTRRP
Trigger: CGGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCG...TGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCACCGCGAAGCGCCCGCTaGACGAGGGCCCGGTGTAGC +
Preference number: 4 (lower is better)
Translates to: FIASTAPKALGSLLTAIAPRSAR*TRARCS
Trigger: GCTACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGG...TGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp GGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCACGAGCTGCACCTTaGAGTGTTTGTTCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: GTGHGRGLLGLGPSHLLCPRAAP*SVCSSL
Trigger: CAGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGG...GCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGTGCGGTCGGCGCCGCTaGCATTGGCGGGGTACTCGG +
Preference number: 4 (lower is better)
Translates to: SLLQAQPQRHWAVSSLPSCGRRR*HWRGTR
Trigger: CCGAGTACCCCGCCAATGGCAGCGGCGCCGACCGCA...CGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GGCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAATGCGGTCGGCGCCGCTaGCATTGGCGGGGTACTCGG +
Preference number: 4 (lower is better)
Translates to: GSLLTAIAPGGSSIAISKCGRRR*HWRGTR
Trigger: CCGAGTACCCCGCCAATGGCAGCGGCGCCGACCGCA...TTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GCGCCGTCACTGCAGGGCCCTGACGAGGTAGAGCTTCTCCCCGTGCTCGCTGGTAATGTGAACTCGCCCTaGTCCTCCCCTCCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: APSLQGPDEVELLPVLAGNVNSP*SSPPLK
Trigger: CTTTAGAGGAGGGGAGGAGCAGGGCGAGTTCACATT...ACCAGCGAGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGACGGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451463.6
CDS-3UTR CCA 90 bp GAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCCACAGTTGAGAGGTGACTaGCAAAACGCAGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: ERLAEKPSGPSPREEPLPQLRGD*QNAELF
Trigger: GAAGAGTTCTGCGTTTTGCCAGTCACCTCTCAACTG...TGGCAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR CCA 90 bp ACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAGTCCAGGGCGCACTCGGCCTaGTGCCGCGTCACGTTCCCG +
Preference number: 4 (lower is better)
Translates to: TRWFQYCYQQTYRLPAQSRAHSA*CRVTFP
Trigger: CGGGAACGTGACGCGGCACCAGGCCGAGTGCGCCCT...GGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSHGRCR*VALGSL
Trigger: GAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTG...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TGCTCCTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGTGCCATCGCACCCGGTaGTTCCAGTATTGCTATCAG +
Preference number: 4 (lower is better)
Translates to: CSSPPLKLAGRVGSSVGVCHRTR*FQYCYQ
Trigger: CTGATAGCAATACTGGAACCACCGGGTGCGATGGCA...CACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp ACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCAGCACGGTGTTTGTTCTTCCCTaGCGCTTTAAGGGACACGGA +
Preference number: 4 (lower is better)
Translates to: TWARAARTGAIAPALPSTVFVLP*RFKGHG
Trigger: TCCGTGTCCCTTAAAGCGTCAGGGAAGAACAAACAC...CGTGCTGGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TGCTCCTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGGTGTTTGTTCTTCCCTaGCGCTTTAAGGGACACGGA +
Preference number: 4 (lower is better)
Translates to: CSSPPLKLAGRVGSSVGVVFVLP*RFKGHG
Trigger: TCCGTGTCCCTTAAAGCGTCAGGGAAGAACAAACAC...CACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAGGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGATCTTCCTGCGCGTCTTaGCGAGGCCTAGTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: VSAPCTVREPCKGTGHGRSSCAS*RGLVCP
Trigger: AGGACACACTAGGCCTCGGCAAGACGCGCAGGAAGA...TCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp CCATGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACAGCGCCGCTGCCCAATaGAGTAGACATTGTCCACGA +
Preference number: 4 (lower is better)
Translates to: PCKGTGHGRGLLGLGPSHSAAAQ*SRHCPR
Trigger: TCGTGGACAATGTCTACTGCATTGGGCAGCGGCGCT...GTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CAAATGGGAGACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGCGCGGGAGGAGCCTCTaGCACAAGGCCGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: QMGDEPTKRPEHKERLAERGRSL*HKAGRA
Trigger: TGCCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCG...CTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGGGCAGTCTCCTCACTaGCATCGCACCCGGTGGTTC +
Preference number: 4 (lower is better)
Translates to: LGGLRLAPALTGALRLFKGQSPH*HRTRWF
Trigger: GAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCC...TTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGAGTCAATCGTAGGAATGTaGCATCTCAAGACGTTATAT +
Preference number: 4 (lower is better)
Translates to: SLCHKAGRAAPPWGPGGESIVGM*HLKTLY
Trigger: ATATAACGTCTTGAGATGGCACATTCCTACGATTGA...CTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGACTCGGCGTCCGTGCTaGGCGTGGGGGACGCATCCC +
Preference number: 4 (lower is better)
Translates to: SQVPCVFLKRGSMSGNELTRRPC*AWGTHP
Trigger: GGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGT...CAACTCGTTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp CAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACAAGGGGTACAGCGTCTaGACCACATGCAGCACGCGG +
Preference number: 4 (lower is better)
Translates to: QQTYRLPAQSGSHVRAQDKGYSV*TTCSTR
Trigger: CCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTT...GTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCCCGCGAAGCGCCCGCTaGACGAGGGCCCGGTGTAGC +
Preference number: 4 (lower is better)
Translates to: SRKFFIASTAPKALGSLLPRSAR*TRARCS
Trigger: GCTACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGG...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp GTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGCGACCTGAAGGGCAGGCCCGTCACTaGGGACCACCACGTAGTTTT +
Preference number: 4 (lower is better)
Translates to: VGVRPGWQMGDEPTKRPEGQARH*GPPRSF
Trigger: AAAACTACGTGGTGGTCCTCAGTGACGGGCCTGCCC...TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp CAAATGGGAGACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGCTCTGCCCAGCACGCTaGGTGCCCAGGACACGGGCG +
Preference number: 4 (lower is better)
Translates to: QMGDEPTKRPEHKERLAELCPAR*VPRTRA
Trigger: CGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAG...CTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp CTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCAAACATCTGTCTTTCTaGGTCACCGGTTCCCTCTTT +
Preference number: 4 (lower is better)
Translates to: LPSSKAGRPGGLECGCEAKHLSF*VTGSLF
Trigger: AAAGAGGGAACCGGTGACTCAGAAAGACAGATGTTT...GGCCTCACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp CGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTCTGTCATCTTTCATaGAGTCCTTCTTTGGCACAC +
Preference number: 4 (lower is better)
Translates to: RCRWVALGSLLRSQVPCVFCHLS*SPSLAH
Trigger: GTGTGCCAAAGAAGGACTCCATGAAAGATGACAGAA...GACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR CCA 90 bp TCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCATAGCCCGTCCTGTTaGCCGCGTTCCTCACCCGCC +
Preference number: 4 (lower is better)
Translates to: SLLQAQPQRHWAVSSLPSHSPSC*PRSSPA
Trigger: GGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATG...CGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACACGCATCCCGCGCGCTaGTCTTCCTGCGCGTCTTGC +
Preference number: 4 (lower is better)
Translates to: AVSSLPSHPVVPVLLSANTHPAR*SSCASC
Trigger: GCAAGACGCGCAGGAAGACCAGCGCGCGGGATGCGT...GTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTCGGCGTCCGTGCTaGGCGTGGGGGACGCATCCC +
Preference number: 4 (lower is better)
Translates to: SRKFFIASTAPKALGSLLTRRPC*AWGTHP
Trigger: GGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGT...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp CAGCAAACGTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCG +
Preference number: 4 (lower is better)
Translates to: QQTYRLPAQSGSHVRAQDGVRPG*QMGDEP
Trigger: CGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACC...GTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTTTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGAGTGTGAAAGCACTATGTGGATaGCACATTTGGGGTAAATTA +
Preference number: 4 (lower is better)
Translates to: SATRPGGQLHRGAREASVKALCG*HIWGKL
Trigger: TAATTTACCCCAAATGTGCCATCCACATAGTGCTTT...CACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp AAAGAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGAAACATCTGTCTTTCTaGGTCACCGGTTCCCTCTTT +
Preference number: 4 (lower is better)
Translates to: KERLAEKPSGPSPREEPLKHLSF*VTGSLF
Trigger: AAAGAGGGAACCGGTGACTCAGAAAGACAGATGTTT...CAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGACGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: VSAPCTVREPCKGTGHGRRSQVP*VFLKRG
Trigger: ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCG...TCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GAGTGCCCAGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCAATCGTAGGAATGTaGCATCTCAAGACGTTATAT +
Preference number: 4 (lower is better)
Translates to: ECPGHGRCRWVALGSLLRSIVGM*HLKTLY
Trigger: ATATAACGTCTTGAGATGGCACATTCCTACGATTGA...GCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGCATAGCCCGTCCTGTTaGCCGCGTTCCTCACCCGCC +
Preference number: 4 (lower is better)
Translates to: SQVPCVFLKRGSMSGNELHSPSC*PRSSPA
Trigger: GGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATG...CAACTCGTTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGGGGACGAGGCCCACCTaGCCCCGGGCATTTTTGCAT +
Preference number: 4 (lower is better)
Translates to: DEPTKRPEHKERLAEKPSGTRPT*PRAFLH
Trigger: ATGCAAAAATGCCCGGGGCCAGGTGGGCCTCGTCCC...CGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp GTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTACCACCAGCTCGTCCATaGTGTGGAAGCGCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: VSSLPSHPVVPVLLSANVPPARP*CGSAAA
Trigger: GGCAGCGGCGCTTCCACACCATGGACGAGCTGGTGG...TACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp AACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGGGGCGCCGCTCGTTCTTCTTaGTGTCCAGCTCCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: NRPSDLNIKRDSQRSRRGAARSS*CPAPGP
Trigger: AGGACCAGGAGCTGGACATCAAGAAGAACGAGCGGC...GCCCCGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp GGCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACTCCTCCTCGGTGACTaGGCTGAAGGGGTACAGCGT +
Preference number: 4 (lower is better)
Translates to: GSLLTAIAPGGSSIAISKLLLGD*AEGVQR
Trigger: ACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGAG...TTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp GGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTGAGTCACCGGTTCCCCCACGCCCCGCTCGTTaGGGGCGCACTCGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: GTFGVNYQNICLSESPVPPRPAR*GRTRPG
Trigger: ACCAGGCCGAGTGCGCCCTCAACGAGCGGGGCGTGG...GGGAACCGGTGACTCAGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp TTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGAATGCACGAGCGCCACTTCCGTCACTGCAGGGCCCTaGCGAGGTAGAGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: FKEGFHERERVECTSATSVTAGP*RGRASP
Trigger: GGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGAC...GGAAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCATGGAACCCCTCTTTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp ACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCTCTGCCCAGCACGCTGAAGTTACAAAGCTaGAGGGATTCTCCAAATCCT +
Preference number: 4 (lower is better)
Translates to: TWARAARTGAIAPALPSTLKLQS*RDSPNP
Trigger: AGGATTTGGAGAATCCCTGCAGCTTTGTAACTTCAG...CGTGCTGGGCAGAGCAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR GCA 90 bp GTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGCGACCTGAAAGCGCCGCTGCCCAATaGAGTAGACATTGTCCACGA +
Preference number: 4 (lower is better)
Translates to: VGVRPGWQMGDEPTKRPESAAAQ*SRHCPR
Trigger: TCGTGGACAATGTCTACTGCATTGGGCAGCGGCGCT...TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTGGCTCGCTCACTTACTaGACTGACGCCCACCAATTC +
Preference number: 4 (lower is better)
Translates to: ALGSLLRSQVPCVFLKRGGSLTY*TDAHQF
Trigger: GAATTGGTGGGCGTCAGTGCAGTAAGTGAGCGAGCC...ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393349.2
CDS-3UTR CCA 90 bp CAAATGGGAGACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGCAGGCTCAGGAAGCTTaGGGACTCCGCAGCCGCCTC +
Preference number: 4 (lower is better)
Translates to: QMGDEPTKRPEHKERLAEQAQEA*GLRSRL
Trigger: GAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTG...CTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp CGCCACTTCCGATGGAAAAGGAATAATGTGAACTCGCCCTGCTCCTCCCCTCCTCCACCACGTAGTTTTTaGGGACGAGGCCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: RHFRWKRNNVNSPCSSPPPPRSF*GRGPPG
Trigger: GCCAGGTGGGCCTCGTCCCCAAAAACTACGTGGTGG...AGGAGGGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCCATCGGAAGTGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp CTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAATGTGGGTGTGAGGCCTaGATGGCAAATGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: LGGLRLAPALTGALRLFKCGCEA*MANGRR
Trigger: TCGTCTCCCATTTGCCATCCAGGCCTCACACCCACA...TTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp CTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAACCACGAGCTGCACCTTaGAGTGTTTGTTCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: LGGLRLAPALTGALRLFKPRAAP*SVCSSL
Trigger: CAGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGG...TTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTTCTGCCCGTTGTAGCTaGCCCGCCACCAACCGTCGC +
Preference number: 4 (lower is better)
Translates to: RKFFIASTAPKALGSLLTSARCS*PATNRR
Trigger: GCGACGGTTGGTGGCGGGGCAGCTACAACGGGCAGA...AGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGACATTGTCCACGAGCTaGACCTTGAAGTGTTTGTTC +
Preference number: 4 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLTLSTS*TLKCLF
Trigger: GAACAAACACTTCAAGGTGCAGCTCGTGGACAATGT...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCGGTGGTTCCAGTATTaGTATCAGCAAACGTATCGG +
Preference number: 4 (lower is better)
Translates to: GGLECGCEAWMANGRRTDRWFQY*YQQTYR
Trigger: CCGATACGTTTGCTGATAGCAATACTGGAACCACCG...GTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGCAGGAAATTCTTTATTaGAAGCACAGCCCCAAAGGC +
Preference number: 4 (lower is better)
Translates to: LNIKRDSQRSRRGRPRGRQEILY*KHSPKG
Trigger: GCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTG...CCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCTCCGCTCCACGTAGTTaGACGGTACATAGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSSAPRS*TVHSPS
Trigger: GGACGGGCTATGTACCGTCCAACTACGTGGAGCGGA...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGAATGCACGAGCGCCACTTCCGGTGTAGCTTATCTGTaGGGCGTGCGCAGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: FKEGFHERERVECTSATSGVAYL*GVRRVQ
Trigger: CTGCACCCTGCGCACGCCCCACAGATAAGCTACACC...GGAAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCATGGAACCCCTCTTTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAGGTGTGAGGCCTGGATaGCAAATGGGAGACGAACCG +
Preference number: 4 (lower is better)
Translates to: SHPVVPVLLSANVSAPCTGVRPG*QMGDEP
Trigger: CGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACC...TGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CAA 72 bp GTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATaGCTATCAGCAAACGTATCGGCTCCCTGCACAGTC +
Preference number: 4 (lower is better)
Translates to: VSSLPSHPVVPV*LSANVSAPCTV
Trigger: GACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp GGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATACTCTGCCCAGCACGCTaGGTGCCCAGGACACGGGCG +
Preference number: 4 (lower is better)
Translates to: GSQDPFFNRRNVPSQDVILCPAR*VPRTRA
Trigger: CGCCCGTGTCCTGGGCACTCAGCGTGCTGGGCAGAG...TATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp GGCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAAGCTCACTTACTGCACTaGCGCCCACCAATTCACCAC +
Preference number: 4 (lower is better)
Translates to: GSLLTAIAPGGSSIAISKAHLLH*RPPIHH
Trigger: GTGGTGAATTGGTGGGCGTCAGTGCAGTAAGTGAGC...TTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393349.2
CDS-3UTR GCA 90 bp TCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATTGCAAGCGGTACTCGGCGTCCGTaGTGGGCGTGGGGGACGCAT +
Preference number: 4 (lower is better)
Translates to: SPVPSFADCLSRKFFIASGTRRP*WAWGTH
Trigger: ATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACC...GCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTGAGTCACCGGTTCCCGGGAGCCCTGGCCATTaGTCAGCGAGGCGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: GTFGVNYQNICLSESPVPGSPGH*SARRPC
Trigger: GCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCC...GGGAACCGGTGACTCAGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGAGCGCCGCTGCCCAATaGAGTAGACATTGTCCACGA +
Preference number: 4 (lower is better)
Translates to: DEPTKRPEHKERLAEKPSSAAAQ*SRHCPR
Trigger: TCGTGGACAATGTCTACTGCATTGGGCAGCGGCGCT...CGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp CCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAACGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: PALTGALRLFKEGFHERERSQVP*VFLKRG
Trigger: ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCG...TTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp ATCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATGGGGCCATCGCACCTaGTCTGCCCAGCACGCTGAG +
Preference number: 4 (lower is better)
Translates to: ICLSESPVPSFADCLSRKWGHRT*SAQHAE
Trigger: CTCAGCGTGCTGGGCAGAGCAGGTGCGATGGCCCCA...TTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp CTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCGTGTTTGTTCTTCCCTaGCGCTTTAAGGGACACGGA +
Preference number: 4 (lower is better)
Translates to: LRLAPALTGALRLFKEGFVFVLP*RFKGHG
Trigger: TCCGTGTCCCTTAAAGCGTCAGGGAAGAACAAACAC...GAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCACCACGAGCTGCACCTTaGAGTGTTTGTTCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: FIASTAPKALGSLLTAIAPRAAP*SVCSSL
Trigger: CAGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGG...TGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCGTCACTGCAGGGCCCTaGCGAGGTAGAGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: CLSESPVPSFADCLSRKFVTAGP*RGRASP
Trigger: GGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGAC...GAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAGGAAAAGGAATAATGTaGACTCGCCCTGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: SHPVVPVLLSANVSAPCTGKGIM*TRPAPP
Trigger: GGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCC...TGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCTCTTCCTGCGCGTCTTaGCGAGGCCTAGTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: SRKFFIASTAPKALGSLLSSCAS*RGLVCP
Trigger: AGGACACACTAGGCCTCGGCAAGACGCGCAGGAAGA...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTACGGGAACGAGTTGAATaGACGAGCGCCACTTCCGAT +
Preference number: 4 (lower is better)
Translates to: VSSLPSHPVVPVLLSANVRERVE*TSATSD
Trigger: ATCGGAAGTGGCGCTCGTGCATTCAACTCGTTCCCG...TACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TTTAAAGAGGGGTTCCATGAGCGGGAACGAGTTGAATGCACGAGCGCCACTTCCCGGGAACGAGTTGAATaGACGAGCGCCACTTCCGAT +
Preference number: 4 (lower is better)
Translates to: FKEGFHERERVECTSATSRERVE*TSATSD
Trigger: ATCGGAAGTGGCGCTCGTGCATTCAACTCGTTCCCG...GGAAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCATGGAACCCCTCTTTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCACGCTCACAGGTGCCCTaGGTCTTTTTAAAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: FIASTAPKALGSLLTAIARSQVP*VFLKRG
Trigger: ACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCG...TGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATGGGACGAGGCCCACCTaGCCCCGGGCATTTTTGCAT +
Preference number: 4 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNGTRPT*PRAFLH
Trigger: ATGCAAAAATGCCCGGGGCCAGGTGGGCCTCGTCCC...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCTCTTTGGCACACAGTTaGGAGGTGACTGGCAAAACG +
Preference number: 4 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSSLAHS*EVTGKT
Trigger: CGTTTTGCCAGTCACCTCTCAACTGTGTGCCAAAGA...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR GCA 90 bp TCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAACCGGTTCCCTCTTTTaGAGACTGCCTTTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: SHPVVPVLLSANVSAPCTTGSLF*RLPFQE
Trigger: TTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGT...TGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCACCGGTTCCCTCTTTTaGAGACTGCCTTTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSTGSLF*RLPFQE
Trigger: TTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGT...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATGGTGTAGCTTATCTGTaGGGCGTGCGCAGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNGVAYL*GVRRVQ
Trigger: CTGCACCCTGCGCACGCCCCACAGATAAGCTACACC...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGTGTGGATGGCACATTTaGGGTAAATTACCAAAACAT +
Preference number: 4 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLCGWHI*GKLPKH
Trigger: ATGTTTTGGTAATTTACCCCAAATGTGCCATCCACA...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AAGCACTATGTGGATGGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTCCAGGACACGGGCGCTaGCGCTGGGTGGCCTTAGGC +
Preference number: 4 (lower is better)
Translates to: KHYVDGTFGVNYQNICLSPGHGR*RWVALG
Trigger: GCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGG...AGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCCATCCACATAGTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCGGTGGTTCCAGTATTaGTATCAGCAAACGTATCGG +
Preference number: 4 (lower is better)
Translates to: SLLQAQPQRHWAVSSLPSRWFQY*YQQTYR
Trigger: CCGATACGTTTGCTGATAGCAATACTGGAACCACCG...CGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp ATTCAAACAAGCCGAAGGGCAAGAGGAAAAAGCACTATGTGGATGGCACATTTGGGGCAGTCTCCTCACTaGCATCGCACCCGGTGGTTC +
Preference number: 4 (lower is better)
Translates to: IQTSRRARGKSTMWMAHLGQSPH*HRTRWF
Trigger: GAACCACCGGGTGCGATGGCAGTGAGGAGACTGCCC...CAAATGTGCCATCCACATAGTGCTTTTTCCTCTTGCCCTTCGGCTTGTTTGAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GTATCGGCTCCCTGCACAGTCCGGGAGCCATGTAAGGGCACAGGACATGGGCGATCAATCGTAGGAATGTaGCATCTCAAGACGTTATAT +
Preference number: 4 (lower is better)
Translates to: VSAPCTVREPCKGTGHGRSIVGM*HLKTLY
Trigger: ATATAACGTCTTGAGATGGCACATTCCTACGATTGA...TCGCCCATGTCCTGTGCCCTTACATGGCTCCCGGACTGTGCAGGGAGCCGATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGCACAGTTGAGAGGTGACTaGCAAAACGCAGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: FIASTAPKALGSLLTAIAQLRGD*QNAELF
Trigger: GAAGAGTTCTGCGTTTTGCCAGTCACCTCTCAACTG...TGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR CCA 90 bp TGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTCCGCTCCACGTAGTTaGACGGTACATAGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: CLSESPVPSFADCLSRKFSAPRS*TVHSPS
Trigger: GGACGGGCTATGTACCGTCCAACTACGTGGAGCGGA...GAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp ACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATATTTAAACTATCGGCGCCGCTGCCATTaGCGGGGTACTCGGCGTCCG +
Preference number: 4 (lower is better)
Translates to: TPSSIVGMCHLKTLYLNYRRRCH*RGTRRP
Trigger: CGGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCG...ATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGCGGGCAGCTCCACCGTaGGGCCCGGGAGGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQRAAPP*GPGGEC
Trigger: ACACTCGCCTCCCGGGCCCCACGGTGGAGCTGCCCG...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp AGTTTAGGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGCAGCCCCAAAGGCACTaGGCAGTCTCCTCACTGCCA +
Preference number: 4 (lower is better)
Translates to: SLGDLKTPSSIVGMCHLKQPQRH*AVSSLP
Trigger: TGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTG...CTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCCTAAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCAAACATCTGTCTTTCTaGGTCACCGGTTCCCTCTTT +
Preference number: 4 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSKHLSF*VTGSLF
Trigger: AAAGAGGGAACCGGTGACTCAGAAAGACAGATGTTT...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAACGCGGGAGGAGCCTCTaGCACAAGGCCGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEERGRSL*HKAGRA
Trigger: TGCCCGCCCGGCCTTGTGGCAGAGGCTCCTCCCGCG...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTGAGTCACCGGTTCCCAACGTATCGGCTCCCTaGACAGTCCGGGAGCCATGT +
Preference number: 4 (lower is better)
Translates to: GTFGVNYQNICLSESPVPNVSAP*TVREPC
Trigger: ACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTT...GGGAACCGGTGACTCAGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACCAGGAAATTCTTTATTaGAAGCACAGCCCCAAAGGC +
Preference number: 4 (lower is better)
Translates to: AVSSLPSHPVVPVLLSANQEILY*KHSPKG
Trigger: GCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTG...GTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp AGTTTAGGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGTCCGCTCCACGTAGTTaGACGGTACATAGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: SLGDLKTPSSIVGMCHLKSAPRS*TVHSPS
Trigger: GGACGGGCTATGTACCGTCCAACTACGTGGAGCGGA...CTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCCTAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATAAGCTCGTCCATGGTGTaGAAGCGCCGCTGCCCAATG +
Preference number: 4 (lower is better)
Translates to: GSQDPFFNRRNVPSQDVISSSMV*KRRCPM
Trigger: CATTGGGCAGCGGCGCTTCCACACCATGGACGAGCT...TATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTGTGGGTGTGAGGCCTaGATGGCAAATGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNCGCEA*MANGRR
Trigger: TCGTCTCCCATTTGCCATCCAGGCCTCACACCCACA...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCCATCGGAGCGCCACTTCCGATaGAAAAGGAATAATGTGAAC +
Preference number: 4 (lower is better)
Translates to: SLLQAQPQRHWAVSSLPSERHFR*KRNNVN
Trigger: GTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTC...CGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATGGAAAAGGAATAATGTaGACTCGCCCTGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNGKGIM*TRPAPP
Trigger: GGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCC...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATAATGTGAACTCGCCCTaGTCCTCCCCTCCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNNVNSP*SSPPLK
Trigger: CTTTAGAGGAGGGGAGGAGCAGGGCGAGTTCACATT...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AAGCACTATGTGGATGGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTTGGGGCCATCGCACCTaGTCTGCCCAGCACGCTGAG +
Preference number: 4 (lower is better)
Translates to: KHYVDGTFGVNYQNICLSWGHRT*SAQHAE
Trigger: CTCAGCGTGCTGGGCAGAGCAGGTGCGATGGCCCCA...AGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCCATCCACATAGTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp GATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGATAAGCACGCGGGAGCCCTaGCCATTGCTCAGCGAGGCG +
Preference number: 4 (lower is better)
Translates to: DQLFSLIICISVNKRLQISTREP*PLLSEA
Trigger: CGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCT...TATCTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAACACGGGCGCTGCCGCTaGGTGGCCTTAGGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEEHGRCR*VALGSL
Trigger: GAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTG...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATGAGTCCTTCTGCTTCTaGAGACCAGTCAATCGACGT +
Preference number: 4 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNESFCF*RPVNRR
Trigger: ACGTCGATTGACTGGTCTTCAGAAGCAGAAGGACTC...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393349.2
CDS-3UTR GCA 90 bp ACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATATTTAAACTATGCGCGCTGGTCTTCCTaGGCGTCTTGCCGAGGCCTA +
Preference number: 4 (lower is better)
Translates to: TPSSIVGMCHLKTLYLNYARWSS*ASCRGL
Trigger: TAGGCCTCGGCAAGACGCGCAGGAAGACCAGCGCGC...ATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAGGTACTCGGCGTCCGTaGTGGGCGTGGGGGACGCAT +
Preference number: 4 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEEGTRRP*WAWGTH
Trigger: ATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACC...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp ACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATATTTAAACTATTCTGCCCGTTGTAGCTaGCCCGCCACCAACCGTCGC +
Preference number: 4 (lower is better)
Translates to: TPSSIVGMCHLKTLYLNYSARCS*PATNRR
Trigger: GCGACGGTTGGTGGCGGGGCAGCTACAACGGGCAGA...ATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAGGGAGCCCTGGCCATTaGTCAGCGAGGCGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEEGSPGH*SARRPC
Trigger: GCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCC...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp TCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATTGCAAGCAATGTGAACTCGCCCTaGTCCTCCCCTCCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: SPVPSFADCLSRKFFIASNVNSP*SSPPLK
Trigger: CTTTAGAGGAGGGGAGGAGCAGGGCGAGTTCACATT...GCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp ATTCAAACAAGCCGAAGGGCAAGAGGAAAAAGCACTATGTGGATGGCACATTTGCCTCCAAGACGTAGTTaGAGGGGAACCAGCCGATCT +
Preference number: 4 (lower is better)
Translates to: IQTSRRARGKSTMWMAHLPPRRS*RGTSRS
Trigger: AGATCGGCTGGTTCCCCTCCAACTACGTCTTGGAGG...CAAATGTGCCATCCACATAGTGCTTTTTCCTCTTGCCCTTCGGCTTGTTTGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp ATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAAAAGCACTATGTGGAAGCTCGTCCATGGTGTaGAAGCGCCGCTGCCCAATG +
Preference number: 4 (lower is better)
Translates to: IIVRFKQAEGQEEKALCGSSSMV*KRRCPM
Trigger: CATTGGGCAGCGGCGCTTCCACACCATGGACGAGCT...TCCACATAGTGCTTTTTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp ACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATATTTAAACTATCCACCAGCTCGTCCATaGTGTGGAAGCGCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: TPSSIVGMCHLKTLYLNYPPARP*CGSAAA
Trigger: GGCAGCGGCGCTTCCACACCATGGACGAGCTGGTGG...ATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCGAGCGCCACTTCCGATaGAAAAGGAATAATGTGAAC +
Preference number: 4 (lower is better)
Translates to: SRKFFIASTAPKALGSLLERHFR*KRNNVN
Trigger: GTTCACATTATTCCTTTTCCATCGGAAGTGGCGCTC...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
3UTR CAA 72 bp GTGTGTGTGTGTGCACGTGTGTGTGTGTATAAAGTGTaGGTAGCTCCCTTCCCCAAAGATCAGCTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: VCVCARVCVYKV*VAPFPKDQLFS
Trigger: GGAAAACAGCTGATCTTTGGGGAAGGGAGCTACCAACACTTTATACACACACACACGTGCACACACACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGTCAGCGAGGCGCCCTTaGGCAGGCTCAGGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQSARRP*AGSGSL
Trigger: CAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGA...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR GCA 90 bp GGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTGAGTCACCGGTTCCCACCGGTTCCCTCTTTTaGAGACTGCCTTTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: GTFGVNYQNICLSESPVPTGSLF*RLPFQE
Trigger: TTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGT...GGGAACCGGTGACTCAGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp CAAATGGGAGACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGTTCTGTCATCTTTCATaGAGTCCTTCTTTGGCACAC +
Preference number: 4 (lower is better)
Translates to: QMGDEPTKRPEHKERLAEFCHLS*SPSLAH
Trigger: GTGTGCCAAAGAAGGACTCCATGAAAGATGACAGAA...CTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000451463.6
CDS-3UTR CCA 90 bp TCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACATGTGGATGGCACATTTaGGGTAAATTACCAAAACAT +
Preference number: 4 (lower is better)
Translates to: SHPVVPVLLSANVSAPCTCGWHI*GKLPKH
Trigger: ATGTTTTGGTAATTTACCCCAAATGTGCCATCCACA...TGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR TCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGCTCCTCCTCGGTGACTaGGCTGAAGGGGTACAGCGT +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQLLLGD*AEGVQR
Trigger: ACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGAG...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGGGGCAGGCCCGTCACTaGGGACCACCACGTAGTTTT +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQGQARH*GPPRSF
Trigger: AAAACTACGTGGTGGTCCTCAGTGACGGGCCTGCCC...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR TCA 90 bp GATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGATACCCCGTGCTCGCTGGTaGAGATGGGCGCCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: DQLFSLIICISVNKRLQIPRARW*RWAPFC
Trigger: ACAAAAAGGCGCCCATCTTCACCAGCGAGCACGGGG...TATCTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp ATCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAACAGGAAATTCTTTATTaGAAGCACAGCCCCAAAGGC +
Preference number: 4 (lower is better)
Translates to: ICLSESPVPSFADCLSRKQEILY*KHSPKG
Trigger: GCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTG...TTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGCCCGCCACCACGTCTTaGAGTCGTCCAGCAACCACA +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQPATTS*SRPATT
Trigger: TGTGGTTGCTGGACGACTCCAAGACGTGGTGGCGGG...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp AGTTTAGGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACATTGTCCACGAGCTaGACCTTGAAGTGTTTGTTC +
Preference number: 4 (lower is better)
Translates to: SLGDLKTPSSIVGMCHLKTLSTS*TLKCLF
Trigger: GAACAAACACTTCAAGGTGCAGCTCGTGGACAATGT...CTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCCTAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp GGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATAACATTGTCCACGAGCTaGACCTTGAAGTGTTTGTTC +
Preference number: 4 (lower is better)
Translates to: GSQDPFFNRRNVPSQDVITLSTS*TLKCLF
Trigger: GAACAAACACTTCAAGGTGCAGCTCGTGGACAATGT...TATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR GCA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAAACGTATCGGCTCCCTaGACAGTCCGGGAGCCATGT +
Preference number: 4 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEENVSAP*TVREPC
Trigger: ACATGGCTCCCGGACTGTGCAGGGAGCCGATACGTT...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp AAGCACTATGTGGATGGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTTCTCAATCACCTCCATaGTCTCCCCCTTCTCGAAGT +
Preference number: 4 (lower is better)
Translates to: KHYVDGTFGVNYQNICLSSQSPP*SPPSRS
Trigger: ACTTCGAGAAGGGGGAGACCATGGAGGTGATTGAGA...AGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCCATCCACATAGTGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp ATCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAAAAAGCACTATGTGGATaGCACATTTGGGGTAAATTA +
Preference number: 4 (lower is better)
Translates to: ICLSESPVPSFADCLSRKKALCG*HIWGKL
Trigger: TAATTTACCCCAAATGTGCCATCCACATAGTGCTTT...TTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGAT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGTCTCAATCACCTCCATaGTCTCCCCCTTCTCGAAGT +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQSQSPP*SPPSRS
Trigger: ACTTCGAGAAGGGGGAGACCATGGAGGTGATTGAGA...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CCA 90 bp GGCACATTTGGGGTAAATTACCAAAACATCTGTCTTTCTGAGTCACCGGTTCCCAAAGCACTATGTGGATaGCACATTTGGGGTAAATTA +
Preference number: 4 (lower is better)
Translates to: GTFGVNYQNICLSESPVPKALCG*HIWGKL
Trigger: TAATTTACCCCAAATGTGCCATCCACATAGTGCTTT...GGGAACCGGTGACTCAGAAAGACAGATGTTTTGGTAATTTACCCCAAATGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CCA 90 bp AAAGATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGTGTGGATGGCACATTTaGGGTAAATTACCAAAACAT +
Preference number: 4 (lower is better)
Translates to: KDQLFSLIICISVNKRLQCGWHI*GKLPKH
Trigger: ATGTTTTGGTAATTTACCCCAAATGTGCCATCCACA...CTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS GCA 90 bp AGATGCGGTCGGCGCCGCTGCCATTGGCGGGGTACTCGGCGTCCGTaGTGGGCGTGGGGGACGCATCCCGCGCGCTGGTCTTCCTGCGCG +
Preference number: 5 (lower is better)
Translates to: RCGRRRCHWRGTRRP*WAWGTHPARWSSCA
Trigger: CGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCGACCGCATCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 90 bp CGGCGCCGCTGCCATTGGCGGGGTACTCGGCGTCCGTGCTGGGCGTaGGGGACGCATCCCGCGCGCTGGTCTTCCTGCGCGTCTTGCCGA +
Preference number: 5 (lower is better)
Translates to: RRRCHWRGTRRPCWA*GTHPARWSSCASCR
Trigger: TCGGCAAGACGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 90 bp TGCGGTCGGCGCCGCTGCCATTGGCGGGGTACTCGGCGTCCGTGCTaGGCGTGGGGGACGCATCCCGCGCGCTGGTCTTCCTGCGCGTCT +
Preference number: 5 (lower is better)
Translates to: CGRRRCHWRGTRRPC*AWGTHPARWSSCAS
Trigger: AGACGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCGACCGCA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 90 bp GCCCGCGAAGCGCCCGCTGGACGAGGGCCCGGTGTAGCTTATCTGTaGGGCGTGCGCAGGGTGCAGGGCAGGCCCGTCACTGAGGACCAC +
Preference number: 5 (lower is better)
Translates to: AREAPAGRGPGVAYL*GVRRVQGRPVTEDH
Trigger: GTGGTCCTCAGTGACGGGCCTGCCCTGCACCCTGCGCACGCCCCACAGATAAGCTACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp AGGAGCCTCTGCCACAAGGCCGGGCGGGCAGCTCCACCGTGGGGCCCGGGAGGCGTCTTCCTGCGCGTCTaGCCGAGGCCTAGTGTGTCC +
Preference number: 5 (lower is better)
Translates to: RSLCHKAGRAAPPWGPGGVFLRV*PRPSVS
Trigger: GGACACACTAGGCCTCGGCAAGACGCGCAGGAAGAC...GCCTCCCGGGCCCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS GCA 90 bp CATGCAGCACGCGGGAGCCCTGGCCATTGCTCAGCGAGGCGCCCTTaGGCAGGCTCAGGAAGCTTGGGGACTCCGCAGCCGCCTCGTCCA +
Preference number: 5 (lower is better)
Translates to: HAARGSPGHCSARRP*AGSGSLGTPQPPRP
Trigger: TGGACGAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 90 bp GGTACTCGGCGTCCGTGCTGGGCGTGGGGGACGCATCCCGCGCGCTaGTCTTCCTGCGCGTCTTGCCGAGGCCTAGTGTGTCCTTCAGGT +
Preference number: 5 (lower is better)
Translates to: GTRRPCWAWGTHPAR*SSCASCRGLVCPSG
Trigger: ACCTGAAGGACACACTAGGCCTCGGCAAGACGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS GCA 90 bp CGCACTCGGCCTGGTGCCGCGTCACGTTCCCGTAGTACCACTCTCTaGCCGCGAAGCGCCCGCTGGACGAGGGCCCGGTGTAGCTTATCT +
Preference number: 5 (lower is better)
Translates to: RTRPGAASRSRSTTL*PRSARWTRARCSLS
Trigger: AGATAAGCTACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGGGCAGAGAGTGGTACTACGGGAACGTGACGCGGCACCAGGCCGAGTGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 90 bp GCGTCACGTTCCCGTAGTACCACTCTCTGCCCGCGAAGCGCCCGCTaGACGAGGGCCCGGTGTAGCTTATCTGTGGGGCGTGCGCAGGGT +
Preference number: 5 (lower is better)
Translates to: ASRSRSTTLCPRSAR*TRARCSLSVGRAQG
Trigger: ACCCTGCGCACGCCCCACAGATAAGCTACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGGGCAGAGAGTGGTACTACGGGAACGTGACGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp CTCCCCTCCTCTAAAGCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCACCCGCCACCACGTCTaGGAGTCGTCCAGCAACCAC +
Preference number: 5 (lower is better)
Translates to: LPSSKAGRPGGLECGCEATRHHV*ESSSNH
Trigger: GTGGTTGCTGGACGACTCCAAGACGTGGTGGCGGGT...GGCCTCACACCCACACTCGAGCCCACCCGGCCGGCCAGCTTTAGAGGAGGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS GCA 90 bp GGTACAGCGTCTGGACCACATGCAGCACGCGGGAGCCCTGGCCATTaGTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTTGGGGACT +
Preference number: 5 (lower is better)
Translates to: GTASGPHAARGSPGH*SARRPCAGSGSLGT
Trigger: AGTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS GCA 90 bp TCCTCCTCGGTGACTGAGCTGAAGGGGTACAGCGTCTGGACCACATaGAGCACGCGGGAGCCCTGGCCATTGCTCAGCGAGGCGCCCTTG +
Preference number: 5 (lower is better)
Translates to: SSSVTELKGYSVWTT*STREPWPLLSEAPL
Trigger: CAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 90 bp CTGGCCATTGCTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTTaGGGACTCCGCAGCCGCCTCGTCCACCTCCTCCAAGACGTAGTT +
Preference number: 5 (lower is better)
Translates to: LAIAQRGALAQAQEA*GLRSRLVHLLQDVV
Trigger: AACTACGTCTTGGAGGAGGTGGACGAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 90 bp CTGAAGGGGTACAGCGTCTGGACCACATGCAGCACGCGGGAGCCCTaGCCATTGCTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTT +
Preference number: 5 (lower is better)
Translates to: LKGYSVWTTCSTREP*PLLSEAPLRRLRKL
Trigger: AAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp GAGAGACTCGCAGAGAAGCCGTCGGGGCCGTCCCCGCGGGAGGAGCCTCTGCCACCGGTGGTTCCAGTATaGCTATCAGCAAACGTATCG +
Preference number: 5 (lower is better)
Translates to: ERLAEKPSGPSPREEPLPPVVPV*LSANVS
Trigger: CGATACGTTTGCTGATAGCAATACTGGAACCACCGG...TGGCAGAGGCTCCTCCCGCGGGGACGGCCCCGACGGCTTCTCTGCGAGTCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS CCA 90 bp TCACGAGGGAGCCCTTCTTCAGGCTGTTCTTCCGCTCCACGTAGTTaGACGGTACATAGCCCGTCCTGTTGGCCGCGTTCCTCACCCGCC +
Preference number: 5 (lower is better)
Translates to: SRGSPSSGCSSAPRS*TVHSPSCWPRSSPA
Trigger: GGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATGTACCGTCCAACTACGTGGAGCGGAAGAACAGCCTGAAGAAGGGCTCCCTCGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS CCA 90 bp AAGTTGAGCTCCTCCTCGGTGACTGAGCTGAAGGGGTACAGCGTCTaGACCACATGCAGCACGCGGGAGCCCTGGCCATTGCTCAGCGAG +
Preference number: 5 (lower is better)
Translates to: KLSSSSVTELKGYSV*TTCSTREPWPLLSE
Trigger: CTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGAGCTCAACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp GTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGCGACCTGAACTCAGCGAGGCGCCCTaGCGCAGGCTCAGGAAGCTT +
Preference number: 5 (lower is better)
Translates to: VGVRPGWQMGDEPTKRPELSEAP*RRLRKL
Trigger: AAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAG...TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp GAGTGCCCAGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTGCACCTTGAAGTGTTaGTTCTTCCCTGACGCTTTA +
Preference number: 5 (lower is better)
Translates to: ECPGHGRCRWVALGSLLRCTLKC*FFPDAL
Trigger: TAAAGCGTCAGGGAAGAACAAACACTTCAAGGTGCA...GCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCTGGGCACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS TCA 90 bp CTCCATGGTCTCCCCCTTCTCGAAGTTGAGCTCCTCCTCGGTGACTaGGCTGAAGGGGTACAGCGTCTGGACCACATGCAGCACGCGGGA +
Preference number: 5 (lower is better)
Translates to: LHGLPLLEVELLLGD*AEGVQRLDHMQHAG
Trigger: TCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGAGCTCAACTTCGAGAAGGGGGAGACCATGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 90 bp TGTTCTTCCGCTCCACGTAGTTGGACGGTACATAGCCCGTCCTGTTaGCCGCGTTCCTCACCCGCCACCACGTCTTGGAGTCGTCCAGCA +
Preference number: 5 (lower is better)
Translates to: CSSAPRSWTVHSPSC*PRSSPATTSWSRPA
Trigger: TGCTGGACGACTCCAAGACGTGGTGGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATGTACCGTCCAACTACGTGGAGCGGAAGAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS-3UTR CAA 90 bp TCCAGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCTCCACGCCCCGCTCGTaGAGGGCGCACTCGGCCTGG +
Preference number: 5 (lower is better)
Translates to: SRKFFIASTAPKALGSLLSTPRS*RAHSAW
Trigger: CCAGGCCGAGTGCGCCCTCAACGAGCGGGGCGTGGA...GAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS TCA 90 bp ACCACGTCTTGGAGTCGTCCAGCAACCACAGCCGCTCGTTCTTCTTaGTGTCCAGCTCCTGGTCCTGCTGGGCGGTGTAGTCCCACTTGG +
Preference number: 5 (lower is better)
Translates to: TTSWSRPATTAARSS*CPAPGPAGRCSPTW
Trigger: CCAAGTGGGACTACACCGCCCAGCAGGACCAGGAGCTGGACATCAAGAAGAACGAGCGGCTGTGGTTGCTGGACGACTCCAAGACGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS-3UTR CAA 90 bp GACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGAAGCCGTCGCTCAGCGAGGCGCCCTaGCGCAGGCTCAGGAAGCTT +
Preference number: 5 (lower is better)
Translates to: DEPTKRPEHKERLAEKPSLSEAP*RRLRKL
Trigger: AAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAG...CGACGGCTTCTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp GCTGGCCGGCCGGGTGGGCTCGAGTGTGGGTGTGAGGCCTGGATGGCAAATGGGTGTGTGTATAAAGTGTaGGTAGCTCCCTTCCCCAAA +
Preference number: 5 (lower is better)
Translates to: AGRPGGLECGCEAWMANGCVYKV*VAPFPK
Trigger: TTTGGGGAAGGGAGCTACCAACACTTTATACACACA...CCCATTTGCCATCCAGGCCTCACACCCACACTCGAGCCCACCCGGCCGGCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp AGGACACGGGCGCTGCCGCTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTTGTGTGTATAAAGTGTaGGTAGCTCCCTTCCCCAAA +
Preference number: 5 (lower is better)
Translates to: RTRALPLGGLRLAPALTGCVYKV*VAPFPK
Trigger: TTTGGGGAAGGGAGCTACCAACACTTTATACACACA...ACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAGCGGCAGCGCCCGTGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp GTGGGTGTGAGGCCTGGATGGCAAATGGGAGACGAACCGACCAAGCGACCTGAAAGCCGCTCGTTCTTCTaGATGTCCAGCTCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: VGVRPGWQMGDEPTKRPESRSFF*MSSSWS
Trigger: GGACCAGGAGCTGGACATCAAGAAGAACGAGCGGCT...TTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTGCCATCCAGGCCTCACACCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp ACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCTGCACAGTCCACCCGCCACCACGTCTaGGAGTCGTCCAGCAACCAC +
Preference number: 5 (lower is better)
Translates to: TRWFQYCYQQTYRLPAQSTRHHV*ESSSNH
Trigger: GTGGTTGCTGGACGACTCCAAGACGTGGTGGCGGGT...GGACTGTGCAGGGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp TCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCGGCGCCGCTGCCATaGGCGGGGTACTCGGCGTCC +
Preference number: 5 (lower is better)
Translates to: SVFLSHRFPLLQTAFPGNSAPLP*AGYSAS
Trigger: GGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCGA...ATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp AGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTGCAGGCTCAGGAAGCTaGGGGACTCCGCAGCCGCCT +
Preference number: 5 (lower is better)
Translates to: RKFFIASTAPKALGSLLTAGSGS*GTPQPP
Trigger: AGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGC...AGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp TGTAAGGGCACAGGACATGGGCGAGGGCTGCTAGGACTGGGGCCATCGCACCTGCCAGGAAATTCTTTATaGCAAGCACAGCCCCAAAGG +
Preference number: 5 (lower is better)
Translates to: CKGTGHGRGLLGLGPSHLPGNSL*QAQPQR
Trigger: CCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGG...CAGGTGCGATGGCCCCAGTCCTAGCAGCCCTCGCCCATGTCCTGTGCCCTTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS TCA 90 bp TCTGAAGACCAGTCAATCGACGTCCGGCTCGCTCACTTACTGCACTaGCGCCCACCAATTCACCACCACCTCATATCAGAGGGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: SEDQSIDVRLAHLLH*RPPIHHHLISEGQP
Trigger: TGGCTGGCCCTCTGATATGAGGTGGTGGTGAATTGGTGGGCGTCAGTGCAGTAAGTGAGCGAGCCGGACGTCGATTGACTGGTCTTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393349.2
ENST00000425756.1
CDS GCA 90 bp CTGCTTCTGAAGACCAGTCAATCGACGTCCGGCTCGCTCACTTACTaGACTGACGCCCACCAATTCACCACCACCTCATATCAGAGGGCC +
Preference number: 5 (lower is better)
Translates to: LLLKTSQSTSGSLTY*TDAHQFTTTSYQRA
Trigger: GGCCCTCTGATATGAGGTGGTGGTGAATTGGTGGGCGTCAGTGCAGTAAGTGAGCGAGCCGGACGTCGATTGACTGGTCTTCAGAAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393349.2
ENST00000425756.1
CDS-3UTR CAA 90 bp ATCTGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAAGCAGGCTCAGGAAGCTaGGGGACTCCGCAGCCGCCT +
Preference number: 5 (lower is better)
Translates to: ICLSESPVPSFADCLSRKAGSGS*GTPQPP
Trigger: AGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGC...TTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp GCAGTCTCCTCACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACATGAGCGGGAACGAGTaGAATGCACGAGCGCCACTT +
Preference number: 5 (lower is better)
Translates to: AVSSLPSHPVVPVLLSANMSGNE*NARAPL
Trigger: AAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCAT...GTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGTGAGGAGACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp CGCCACTTCCGATGGAAAAGGAATAATGTGAACTCGCCCTGCTCCTCCCCTCCTATGAGCGGGAACGAGTaGAATGCACGAGCGCCACTT +
Preference number: 5 (lower is better)
Translates to: RHFRWKRNNVNSPCSSPPMSGNE*NARAPL
Trigger: AAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCAT...AGGAGGGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCCATCGGAAGTGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS TCA 90 bp GTAGACATTGTCCACGAGCTGCACCTTGAAGTGTTTGTTCTTCCCTaGCGCTTTAAGGGACACGGAGAAGTCGCTGGGCGAGGACTCGCT +
Preference number: 5 (lower is better)
Translates to: VDIVHELHLEVFVLP*RFKGHGEVAGRGLA
Trigger: AGCGAGTCCTCGCCCAGCGACTTCTCCGTGTCCCTTAAAGCGTCAGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGGACAATGTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp CAAATGGGAGACGAACCGACCAAGCGACCTGAACATAAAGAGAGACTCGCAGAGAGCCGCTCGTTCTTCTaGATGTCCAGCTCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: QMGDEPTKRPEHKERLAESRSFF*MSSSWS
Trigger: GGACCAGGAGCTGGACATCAAGAAGAACGAGCGGCT...CTCTGCGAGTCTCTCTTTATGTTCAGGTCGCTTGGTCGGTTCGTCTCCCATTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp AGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTAGCCGCTCGTTCTTCTaGATGTCCAGCTCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: RKFFIASTAPKALGSLLTSRSFF*MSSSWS
Trigger: GGACCAGGAGCTGGACATCAAGAAGAACGAGCGGCT...AGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCCCGGTGGTTCCAGTATaGCTATCAGCAAACGTATCG +
Preference number: 5 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSPVVPV*LSANVS
Trigger: CGATACGTTTGCTGATAGCAATACTGGAACCACCGG...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp CCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAAGAGGGGTTCCATGAGCGGGAACCAGGAAATTCTTTATaGCAAGCACAGCCCCAAAGG +
Preference number: 5 (lower is better)
Translates to: PALTGALRLFKEGFHEREPGNSL*QAQPQR
Trigger: CCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGG...TTCCCGCTCATGGAACCCCTCTTTAAAAAGACGCAGGGCACCTGTGAGCGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp CTGGGTGGCCTTAGGCTCGCTCCTGCGCTCACAGGTGCCCTGCGTCTTTTTAAATGTGTGTATAAAGTGTaGGTAGCTCCCTTCCCCAAA +
Preference number: 5 (lower is better)
Translates to: LGGLRLAPALTGALRLFKCVYKV*VAPFPK
Trigger: TTTGGGGAAGGGAGCTACCAACACTTTATACACACA...TTTAAAAAGACGCAGGGCACCTGTGAGCGCAGGAGCGAGCCTAAGGCCACCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS TCA 90 bp GTAGACATTGTCCACGAGCTGCACCTTGAAGTGTTTGTTCTTCCCTaGCGCTTTAAGGGACACGGAGAAGTCGCTGGGCTAGTGTGTCCT +
Preference number: 5 (lower is better)
Translates to: VDIVHELHLEVFVLP*RFKGHGEVAGLVCP
Trigger: AGGACACACTAGCCCAGCGACTTCTCCGTGTCCCTTAAAGCGTCAGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGGACAATGTCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451463.6
ENST00000522586.5
CDS-3UTR CAA 90 bp GATCAGCTGTTTTCCTTAATCATCTGTATTAGTGTCAACAAACGGCTACAGATATCGGCGCCGCTGCCATaGGCGGGGTACTCGGCGTCC +
Preference number: 5 (lower is better)
Translates to: DQLFSLIICISVNKRLQISAPLP*AGYSAS
Trigger: GGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCGA...TATCTGTAGCCGTTTGTTGACACTAATACAGATGATTAAGGAAAACAGCTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp TCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTTTATTGCAAGCTGGCCCCGGGCATTTTaGCATTTCCACCACTCGGGG +
Preference number: 5 (lower is better)
Translates to: SPVPSFADCLSRKFFIASWPRAF*HFHHSG
Trigger: CCCCGAGTGGTGGAAATGCAAAAATGCCCGGGGCCA...GCTTGCAATAAAGAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp CGCCACTTCCGATGGAAAAGGAATAATGTGAACTCGCCCTGCTCCTCCCCTCCTTGCACCTTGAAGTGTTaGTTCTTCCCTGACGCTTTA +
Preference number: 5 (lower is better)
Translates to: RHFRWKRNNVNSPCSSPPCTLKC*FFPDAL
Trigger: TAAAGCGTCAGGGAAGAACAAACACTTCAAGGTGCA...AGGAGGGGAGGAGCAGGGCGAGTTCACATTATTCCTTTTCCATCGGAAGTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp ACTGCCATCGCACCCGGTGGTTCCAGTATTGCTATCAGCAAACGTATCGGCTCCTGCACCTTGAAGTGTTaGTTCTTCCCTGACGCTTTA +
Preference number: 5 (lower is better)
Translates to: TAIAPGGSSIAISKRIGSCTLKC*FFPDAL
Trigger: TAAAGCGTCAGGGAAGAACAAACACTTCAAGGTGCA...GGAGCCGATACGTTTGCTGATAGCAATACTGGAACCACCGGGTGCGATGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp AGTTTAGGGGATCTCAAGACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGATGAGCGGGAACGAGTaGAATGCACGAGCGCCACTT +
Preference number: 5 (lower is better)
Translates to: SLGDLKTPSSIVGMCHLKMSGNE*NARAPL
Trigger: AAGTGGCGCTCGTGCATTCAACTCGTTCCCGCTCAT...CTTGAGATGGCACATTCCTACGATTGAAGAAGGGGTCTTGAGATCCCCTAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp AGGAAATTCTTTATTGCAAGCACAGCCCCAAAGGCACTGGGCAGTCTCCTCACTCCGGTGGTTCCAGTATaGCTATCAGCAAACGTATCG +
Preference number: 5 (lower is better)
Translates to: RKFFIASTAPKALGSLLTPVVPV*LSANVS
Trigger: CGATACGTTTGCTGATAGCAATACTGGAACCACCGG...AGTGAGGAGACTGCCCAGTGCCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp TGTCTTTCTGAGTCACCGGTTCCCTCTTTTGCAGACTGCCTTTCCAGGAAATTCTCCACGAGCTGCACCTaGAAGTGTTTGTTCTTCCCT +
Preference number: 5 (lower is better)
Translates to: CLSESPVPSFADCLSRKFSTSCT*KCLFFP
Trigger: AGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGGA...GAATTTCCTGGAAAGGCAGTCTGCAAAAGAGGGAACCGGTGACTCAGAAAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAGTCTTCCTGCGCGTCTaGCCGAGGCCTAGTGTGTCC +
Preference number: 5 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEEVFLRV*PRPSVS
Trigger: GGACACACTAGGCCTCGGCAAGACGCGCAGGAAGAC...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp ACCCCTTCTTCAATCGTAGGAATGTGCCATCTCAAGACGTTATATTTAAACTATTGGCCCCGGGCATTTTaGCATTTCCACCACTCGGGG +
Preference number: 5 (lower is better)
Translates to: TPSSIVGMCHLKTLYLNYWPRAF*HFHHSG
Trigger: CCCCGAGTGGTGGAAATGCAAAAATGCCCGGGGCCA...ATAGTTTAAATATAACGTCTTGAGATGGCACATTCCTACGATTGAAGAAGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS-3UTR CAA 90 bp ATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAAAAAGCACTATGTGGATCCACGAGCTGCACCTaGAAGTGTTTGTTCTTCCCT +
Preference number: 5 (lower is better)
Translates to: IIVRFKQAEGQEEKALCGSTSCT*KCLFFP
Trigger: AGGGAAGAACAAACACTTCAAGGTGCAGCTCGTGGA...TCCACATAGTGCTTTTTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS-3UTR CAA 90 bp TTGAGAATTAAATACATAATTGTGAGATTCAAACAAGCCGAAGGGCAAGAGGAACCAGGAAATTCTTTATaGCAAGCACAGCCCCAAAGG +
Preference number: 5 (lower is better)
Translates to: LRIKYIIVRFKQAEGQEEPGNSL*QAQPQR
Trigger: CCTTTGGGGCTGTGCTTGCAATAAAGAATTTCCTGG...TTCCTCTTGCCCTTCGGCTTGTTTGAATCTCACAATTATGTATTTAATTCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393349.2
ENST00000451463.6
CDS GCA 72 bp CGGCGCCGCTGCCATTGGCGGGGTACTCGGCGTCCGTaGTGGGCGTGGGGGACGCATCCCGCGCGCTGGTCT +
Preference number: 6 (lower is better)
Translates to: RRRCHWRGTRRP*WAWGTHPARWS
Trigger: AGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAATGGCAGCGGCGCCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 72 bp CGCCGCTGCCATTGGCGGGGTACTCGGCGTCCGTGCTaGGCGTGGGGGACGCATCCCGCGCGCTGGTCTTCC +
Preference number: 6 (lower is better)
Translates to: RRCHWRGTRRPC*AWGTHPARWSS
Trigger: GGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAATGGCAGCGGCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 72 bp TGCCATTGGCGGGGTACTCGGCGTCCGTGCTGGGCGTaGGGGACGCATCCCGCGCGCTGGTCTTCCTGCGCG +
Preference number: 6 (lower is better)
Translates to: CHWRGTRRPCWA*GTHPARWSSCA
Trigger: CGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAATGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 72 bp GCGCCCGCTGGACGAGGGCCCGGTGTAGCTTATCTGTaGGGCGTGCGCAGGGTGCAGGGCAGGCCCGTCACT +
Preference number: 6 (lower is better)
Translates to: APAGRGPGVAYL*GVRRVQGRPVT
Trigger: AGTGACGGGCCTGCCCTGCACCCTGCGCACGCCCCACAGATAAGCTACACCGGGCCCTCGTCCAGCGGGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS GCA 72 bp CCTGGTGCCGCGTCACGTTCCCGTAGTACCACTCTCTaGCCGCGAAGCGCCCGCTGGACGAGGGCCCGGTGT +
Preference number: 6 (lower is better)
Translates to: PGAASRSRSTTL*PRSARWTRARC
Trigger: ACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGGGCAGAGAGTGGTACTACGGGAACGTGACGCGGCACCAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 72 bp CGTCCGTGCTGGGCGTGGGGGACGCATCCCGCGCGCTaGTCTTCCTGCGCGTCTTGCCGAGGCCTAGTGTGT +
Preference number: 6 (lower is better)
Translates to: RPCWAWGTHPAR*SSCASCRGLVC
Trigger: ACACACTAGGCCTCGGCAAGACGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS CCA 72 bp GCTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTTaGGGACTCCGCAGCCGCCTCGTCCACCTCCTCCAA +
Preference number: 6 (lower is better)
Translates to: AQRGALAQAQEA*GLRSRLVHLLQ
Trigger: TTGGAGGAGGTGGACGAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CAA 72 bp TGCTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTaGGGGACTCCGCAGCCGCCTCGTCCACCTCCTCCA +
Preference number: 6 (lower is better)
Translates to: CSARRPCAGSGS*GTPQPPRPPPP
Trigger: TGGAGGAGGTGGACGAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CAA 90 bp GGGTACAGCGTCTGGACCACATGCAGCACGCGGGAGCCCTGGCCATaGCTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTTGGGGAC +
Preference number: 6 (lower is better)
Translates to: GYSVWTTCSTREPWP*LSEAPLRRLRKLGD
Trigger: GTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS GCA 72 bp TGGGCGTGGGGGACGCATCCCGCGCGCTGGTCTTCCTaGGCGTCTTGCCGAGGCCTAGTGTGTCCTTCAGGT +
Preference number: 6 (lower is better)
Translates to: WAWGTHPARWSS*ASCRGLVCPSG
Trigger: ACCTGAAGGACACACTAGGCCTCGGCAAGACGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
CDS GCA 72 bp TCTGGACCACATGCAGCACGCGGGAGCCCTGGCCATTaGTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGC +
Preference number: 6 (lower is better)
Translates to: SGPHAARGSPGH*SARRPCAGSGS
Trigger: GCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 72 bp TACAGCGTCTGGACCACATGCAGCACGCGGGAGCCCTaGCCATTGCTCAGCGAGGCGCCCTTGCGCAGGCTC +
Preference number: 6 (lower is better)
Translates to: YSVWTTCSTREP*PLLSEAPLRRL
Trigger: GAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CAA 72 bp TCCCTAATGAGGAAGTCGCCCTCCACGCCCCGCTCGTaGAGGGCGCACTCGGCCTGGTGCCGCGTCACGTTC +
Preference number: 6 (lower is better)
Translates to: SLMRKSPSTPRS*RAHSAWCRVTF
Trigger: GAACGTGACGCGGCACCAGGCCGAGTGCGCCCTCAACGAGCGGGGCGTGGAGGGCGACTTCCTCATTAGGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CAA 90 bp CCTGGCCATTGCTCAGCGAGGCGCCCTTGCGCAGGCTCAGGAAGCTaGGGGACTCCGCAGCCGCCTCGTCCACCTCCTCCAAGACGTAGT +
Preference number: 6 (lower is better)
Translates to: PGHCSARRPCAGSGS*GTPQPPRPPPPRRS
Trigger: ACTACGTCTTGGAGGAGGTGGACGAGGCGGCTGCGGAGTCCCCAAGCTTCCTGAGCCTGCGCAAGGGCGCCTCGCTGAGCAATGGCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 72 bp TCCCGTAGTACCACTCTCTGCCCGCGAAGCGCCCGCTaGACGAGGGCCCGGTGTAGCTTATCTGTGGGGCGT +
Preference number: 6 (lower is better)
Translates to: SRSTTLCPRSAR*TRARCSLSVGR
Trigger: ACGCCCCACAGATAAGCTACACCGGGCCCTCGTCCAGCGGGCGCTTCGCGGGCAGAGAGTGGTACTACGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS GCA 72 bp GTGACTGAGCTGAAGGGGTACAGCGTCTGGACCACATaGAGCACGCGGGAGCCCTGGCCATTGCTCAGCGAG +
Preference number: 6 (lower is better)
Translates to: VTELKGYSVWTT*STREPWPLLSE
Trigger: CTCGCTGAGCAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTTCAGCTCAGTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CCA 72 bp TCCTCCTCGGTGACTGAGCTGAAGGGGTACAGCGTCTaGACCACATGCAGCACGCGGGAGCCCTGGCCATTG +
Preference number: 6 (lower is better)
Translates to: SSSVTELKGYSV*TTCSTREPWPL
Trigger: CAATGGCCAGGGCTCCCGCGTGCTGCATGTGGTCCAGACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS CAA 72 bp GTCCTGTTGGCCGCGTTCCTCACCCGCCACCACGTCTaGGAGTCGTCCAGCAACCACAGCCGCTCGTTCTTC +
Preference number: 6 (lower is better)
Translates to: VLLAAFLTRHHV*ESSSNHSRSFF
Trigger: GAAGAACGAGCGGCTGTGGTTGCTGGACGACTCCAAGACGTGGTGGCGGGTGAGGAACGCGGCCAACAGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS CCA 72 bp TCCTGTTGGCCGCGTTCCTCACCCGCCACCACGTCTTaGAGTCGTCCAGCAACCACAGCCGCTCGTTCTTCT +
Preference number: 6 (lower is better)
Translates to: SCWPRSSPATTS*SRPATTAARSS
Trigger: AGAAGAACGAGCGGCTGTGGTTGCTGGACGACTCCAAGACGTGGTGGCGGGTGAGGAACGCGGCCAACAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS CCA 72 bp GCTCCACGTAGTTGGACGGTACATAGCCCGTCCTGTTaGCCGCGTTCCTCACCCGCCACCACGTCTTGGAGT +
Preference number: 6 (lower is better)
Translates to: APRSWTVHSPSC*PRSSPATTSWS
Trigger: ACTCCAAGACGTGGTGGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATGTACCGTCCAACTACGTGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS TCA 72 bp TGGAGTCGTCCAGCAACCACAGCCGCTCGTTCTTCTTaGTGTCCAGCTCCTGGTCCTGCTGGGCGGTGTAGT +
Preference number: 6 (lower is better)
Translates to: WSRPATTAARSS*CPAPGPAGRCS
Trigger: ACTACACCGCCCAGCAGGACCAGGAGCTGGACATCAAGAAGAACGAGCGGCTGTGGTTGCTGGACGACTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS CCA 72 bp AGCCCTTCTTCAGGCTGTTCTTCCGCTCCACGTAGTTaGACGGTACATAGCCCGTCCTGTTGGCCGCGTTCC +
Preference number: 6 (lower is better)
Translates to: SPSSGCSSAPRS*TVHSPSCWPRS
Trigger: GGAACGCGGCCAACAGGACGGGCTATGTACCGTCCAACTACGTGGAGCGGAAGAACAGCCTGAAGAAGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000393349.2
ENST00000425756.1
ENST00000451463.6
ENST00000522586.5
CDS CAA 90 bp TTCTCCGGCTTCTCAATCACCTCCATGGTCTCCCCCTTCTCGAAGTaGAGCTCCTCCTCGGTGACTGAGCTGAAGGGGTACAGCGTCTGG +
Preference number: 6 (lower is better)
Translates to: FSGFSITSMVSPFSK*SSSSVTELKGYSVW
Trigger: CCAGACGCTGTACCCCTTCAGCTCAGTCACCGAGGAGGAGCTCAACTTCGAGAAGGGGGAGACCATGGAGGTGATTGAGAAGCCGGAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS TCA 72 bp CAGTCAATCGACGTCCGGCTCGCTCACTTACTGCACTaGCGCCCACCAATTCACCACCACCTCATATCAGAG +
Preference number: 6 (lower is better)
Translates to: QSIDVRLAHLLH*RPPIHHHLISE
Trigger: CTCTGATATGAGGTGGTGGTGAATTGGTGGGCGTCAGTGCAGTAAGTGAGCGAGCCGGACGTCGATTGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393349.2
ENST00000425756.1
CDS CAA 72 bp TTCTCAATCACCTCCATGGTCTCCCCCTTCTCGAAGTaGAGCTCCTCCTCGGTGACTGAGCTGAAGGGGTAC +
Preference number: 6 (lower is better)
Translates to: FSITSMVSPFSK*SSSSVTELKGY
Trigger: GTACCCCTTCAGCTCAGTCACCGAGGAGGAGCTCAACTTCGAGAAGGGGGAGACCATGGAGGTGATTGAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000233154.9
ENST00000393349.2
CDS GCA 72 bp AAGACCAGTCAATCGACGTCCGGCTCGCTCACTTACTaGACTGACGCCCACCAATTCACCACCACCTCATAT +
Preference number: 6 (lower is better)
Translates to: KTSQSTSGSLTY*TDAHQFTTTSY
Trigger: ATATGAGGTGGTGGTGAATTGGTGGGCGTCAGTGCAGTAAGTGAGCGAGCCGGACGTCGATTGACTGGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393349.2
ENST00000425756.1
CDS TCA 72 bp TGTCATCTTTCATGGAGTCCTTCTTTGGCACACAGTTaGGAGGTGACTGGCAAAACGCAGAACTCTTCAAAA +
Preference number: 6 (lower is better)
Translates to: CHLSWSPSLAHS*EVTGKTQNSSK
Trigger: TTTTGAAGAGTTCTGCGTTTTGCCAGTCACCTCTCAACTGTGTGCCAAAGAAGGACTCCATGAAAGATGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000233154.9
ENST00000393348.6
ENST00000451463.6