Pregenerated sensors for NCK1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000239213Ensembl transcript IDs: ENST00000461864.6, ENST00000470236.2, ENST00000474250.5, ENST00000661609.1, ENST00000663856.1, ENST00000666310.1, ENST00000666660.1, ENST00000667524.1, ENST00000670711.1
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGAGTGGGTTTCCTGCCCGCGCGGATCCGCCTGCCCACCGCGCGTaGCCCGCCTCTCTCCCAAGAGCTACGCGGCGGCGGCGGAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: QSGFPARADPPAHRA*PASLPRATRRRRSA Trigger: TGCGCTCCGCCGCCGCCGCGTAGCTCTTGGGAGAGAGGCGGGGCACGCGCGGTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS GCA 90 bp | GCGCCGTCTGCAGGCTCGGAGCCGAGCCGGAGGGGGCGCGGAGGCTaGTCGGAGGGTCCAGACTTCTGCACCGGGATTCCGCGAGACCCT | + |
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Preference number: 5 (lower is better) Translates to: APSAGSEPSRRGRGG*SEGPDFCTGIPRDP Trigger: AGGGTCTCGCGGAATCCCGGTGCAGAAGTCTGGACCCTCCGAGCAGCCTCCGCGCCCCCTCCGGCTCGGCTCCGAGCCTGCAGACGGCGC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS GCA 90 bp | GGGTCCAGACTTCTGCACCGGGATTCCGCGAGACCCTCGGGCCGTTaGCCCAGGGAGCGTGACCCCGCGGCCTCCTTGTCAGCCCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: GSRLLHRDSARPSGR*PRERDPAASLSAPG Trigger: TCCAGGGGCTGACAAGGAGGCCGCGGGGTCACGCTCCCTGGGGCAACGGCCCGAGGGTCTCGCGGAATCCCGGTGCAGAAGTCTGGACCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS GCA 90 bp | ATCAGATTGGGTCCAGAGTGGGTTTCCTGCCCGCGCGGATCCGCCTaGCCACCGCGCGTGCCCCGCCTCTCTCCCAAGAGCTACGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: IRLGPEWVSCPRGSA*PPRVPRLSPKSYAA Trigger: CGCCGCGTAGCTCTTGGGAGAGAGGCGGGGCACGCGCGGTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CCA 90 bp | GGACCGGGGAAGGGGGCGACTGAACCTATCAGATTGGGTCCAGAGTaGGTTTCCTGCCCGCGCGGATCCGCCTGCCCACCGCGCGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: GPGKGATEPIRLGPE*VSCPRGSACPPRVP Trigger: GGGCACGCGCGGTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS TCA 90 bp | GTCCATACAGCCTGTTACTCGCTGCGTCGCTTCCTCTTCTCGCGCTaGGTTAGCCCCGGGGGCGCCGTCTGCAGGCTCGGAGCCGAGCCG | + |
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Preference number: 5 (lower is better) Translates to: VHTACYSLRRFLFSR*VSPGGAVCRLGAEP Trigger: CGGCTCGGCTCCGAGCCTGCAGACGGCGCCCCCGGGGCTAACTCAGCGCGAGAAGAGGAAGCGACGCAGCGAGTAACAGGCTGTATGGAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS TCA 90 bp | CGCCGCGCAGCCTCCGCTCCCTCCACATCAGGCACGGCGCTTGATTaGCATGAGGGCCCGCCCAATCCCAGTGCGGCAGAGACCGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: RRAASAPSTSGTALD*HEGPPNPSAAETVV Trigger: GACAACGGTCTCTGCCGCACTGGGATTGGGCGGGCCCTCATGTCAATCAAGCGCCGTGCCTGATGTGGAGGGAGCGGAGGCTGCGCGGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS GCA 90 bp | AAGGGGGCGACTGAACCTATCAGATTGGGTCCAGAGTGGGTTTCCTaGCCGCGCGGATCCGCCTGCCCACCGCGCGTGCCCCGCCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: KGATEPIRLGPEWVS*PRGSACPPRVPRLS Trigger: AGAGAGGCGGGGCACGCGCGGTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS TCA 90 bp | GCGGCAGAGACCGTTGTCGCGTCAGGGACCGGGGAAGGGGGCGACTaGACCTATCAGATTGGGTCCAGAGTGGGTTTCCTGCCCGCGCGG | + |
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Preference number: 5 (lower is better) Translates to: AAETVVASGTGEGGD*TYQIGSRVGFLPAR Trigger: CCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCTGACGCGACAACGGTCTCTGCCGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CCA 90 bp | TGTCGCGTCAGGGACCGGGGAAGGGGGCGACTGAACCTATCAGATTaGGTCCAGAGTGGGTTTCCTGCCCGCGCGGATCCGCCTGCCCAC | + |
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Preference number: 5 (lower is better) Translates to: CRVRDRGRGRLNLSD*VQSGFPARADPPAH Trigger: GTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCTGACGCGACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS TCA 90 bp | ACTCAGGACACAGTCATTTTTGCTGTTAAGTCTCTCCTGCGGCGCTaGGGAGGCAGGCTCAAAGTAACCAACCAGAGCAGCCGCAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TQDTVIFAVKSLLRR*GGRLKVTNQSSRRG Trigger: CCCTCTGCGGCTGCTCTGGTTGGTTACTTTGAGCCTGCCTCCTCAGCGCCGCAGGAGAGACTTAACAGCAAAAATGACTGTGTCCTGAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000661609.1 ENST00000663856.1 ENST00000666310.1 ENST00000666660.1 ENST00000667524.1 |
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| CDS TCA 90 bp | TGGTTCGGGATCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTCTGGCTCCGAAGGTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: WFGIPCESLSEELEP*YWFRALVSGSEGPL Trigger: AAGAGGACCTTCGGAGCCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGATCCCGAACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667524.1 |
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| CDS GCA 90 bp | TCCGAAGGTCCTCTTCATAACACTACTGCCGCCAAGAATGTAAGCTaGCCAAGCACGAGGACACTTTTAGAGGGCCCTCAGACTCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: SEGPLHNTTAAKNVS*PSTRTLLEGPQTQL Trigger: AAGCTGAGTCTGAGGGCCCTCTAAAAGTGTCCTCGTGCTTGGGCAGCTTACATTCTTGGCGGCAGTAGTGTTATGAAGAGGACCTTCGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470236.2 ENST00000666310.1 ENST00000667524.1 |
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| CDS CCA 90 bp | GCACAGTCAGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTCTGGCTCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: AQSELQPHVNPCQRN*SHDTGLEHSSLAPK Trigger: CTTCGGAGCCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCTGACTGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470236.2 |
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| CDS TCA 90 bp | AGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTCTGGCTCCGAAGGTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: RIATPCESLSEELEP*YWFRALVSGSEGPL Trigger: AAGAGGACCTTCGGAGCCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470236.2 |
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| CDS TCA 90 bp | AGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTTGATGCCTCAGCCAGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: RIATPCESLSEELEP*YWFRALVLMPQPVA Trigger: AGCCACTGGCTGAGGCATCAAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666310.1 |
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| CDS CCA 90 bp | GCACAGTCAGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTCTGAGGAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: AQSELQPHVNPCQRN*SHDTGLEHSSLRKE Trigger: CTCCTTCCTCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCTGACTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS TCA 90 bp | TGGGCACTTACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTCTCCCAGGTCCCAATT | + |
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Preference number: 5 (lower is better) Translates to: WALTPCESLSEELEP*YWFRALVYFSQVPI Trigger: AATTGGGACCTGGGAGAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTAAGTGCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS TCA 90 bp | TGGTTCGGGATCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTCTCCCAGGTCCCAATT | + |
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Preference number: 5 (lower is better) Translates to: WFGIPCESLSEELEP*YWFRALVYFSQVPI Trigger: AATTGGGACCTGGGAGAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGATCCCGAACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661609.1 |
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| CDS GCA 90 bp | CACTTCTCTGGACTAGCCTGCTACCCACTCTGCAAATTTTGGACATaGCGACGTGCCAGCCTCCATAATTCTGTATTACTTTTCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: HFSGLACYPLCKFWT*RRASLHNSVLLFSA Trigger: GGCTGAGAAAAGTAATACAGAATTATGGAGGCTGGCACGTCGGCATGTCCAAAATTTGCAGAGTGGGTAGCAGGCTAGTCCAGAGAAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CCA 90 bp | GCACAGTCAGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTATTTCTCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: AQSELQPHVNPCQRN*SHDTGLEHSSISPR Trigger: CCTGGGAGAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCTGACTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461864.6 |
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| CDS CCA 90 bp | CACCCCTCCCCTGGTTCTTCTAAGCAAGAGGATGTATTTGCAAGATaGTTGGCAGGGTCAGGAGTGCAGTCAGTGGCTATGGAAATAAAA | + |
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Preference number: 5 (lower is better) Translates to: HPSPGSSKQEDVFAR*LAGSGVQSVAMEIK Trigger: TTTTATTTCCATAGCCACTGACTGCACTCCTGACCCTGCCAACCATCTTGCAAATACATCCTCTTGCTTAGAAGAACCAGGGGAGGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000461864.6 ENST00000666310.1 |
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| CDS TCA 90 bp | AGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTCTCCCAGGTCCCAATT | + |
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Preference number: 5 (lower is better) Translates to: RIATPCESLSEELEP*YWFRALVYFSQVPI Trigger: AATTGGGACCTGGGAGAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461864.6 |
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| CDS TCA 90 bp | GTGGGCATCGTCCAATCAGTTGAAAGCCTGAATAGCACAAAAGACTaGCCTCCTCCAAGCAAGAGGGAATTCTTTAGCCAACAGACTTTG | + |
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Preference number: 5 (lower is better) Translates to: VGIVQSVESLNSTKD*PPPSKREFFSQQTL Trigger: CAAAGTCTGTTGGCTAAAGAATTCCCTCTTGCTTGGAGGAGGTCAGTCTTTTGTGCTATTCAGGCTTTCAACTGATTGGACGATGCCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS TCA 90 bp | AGAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTCTGAGGAAGGAGGAAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: RIATPCESLSEELEP*YWFRALVSEEGGKV Trigger: AACTTTTCCTCCTTCCTCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS GCA 90 bp | GAGGACACTTTTAGAGGGCCCTCAGACTCAGCTTCTTTTGGTCTGTaGCTCAAATTAAGCACATGTCTTACATTTCTCCCAGGTCCCAAT | + |
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Preference number: 5 (lower is better) Translates to: EDTFRGPSDSASFGL*LKLSTCLTFLPGPN Trigger: ATTGGGACCTGGGAGAAATGTAAGACATGTGCTTAATTTGAGGCACAGACCAAAAGAAGCTGAGTCTGAGGGCCCTCTAAAAGTGTCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000470236.2 ENST00000666310.1 ENST00000667524.1 |
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| CDS CCA 90 bp | CACAATCATTGCAGTTATTTCATCAGCTGTTTCTCCACTGAGCTCTaGTTCCTTTTACTTGAGAATGGATTTTTAGAACCAAGATCTGGA | + |
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Preference number: 5 (lower is better) Translates to: HNHCSYFISCFSTEL*FLLLENGFLEPRSG Trigger: TCCAGATCTTGGTTCTAAAAATCCATTCTCAAGTAAAAGGAACCAGAGCTCAGTGGAGAAACAGCTGATGAAATAACTGCAATGATTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661609.1 |
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| CDS TCA 90 bp | GTCCTTTTGAGTGGTTCGGGATCTGCTTCAAATGACAAAGAGATGTaGGTAATAGGGTTCAACGTCTTTCTTATTTTCAGATTTAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: VLLSGSGSASNDKEM*VIGFNVFLIFRFKA Trigger: AGCTTTAAATCTGAAAATAAGAAAGACGTTGAACCCTATTACTCACATCTCTTTGTCATTTGAAGCAGATCCCGAACCACTCAAAAGGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000666310.1 ENST00000670711.1 |
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| CDS TCA 90 bp | ATTTCCTTGTTTTGTCCTTTTGAGTGGTTCGGGATCTGCTTCAAATaGCAAAGAGATGTGAGTAATAGGGTTCAACGTCTTTCTTATTTT | + |
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Preference number: 5 (lower is better) Translates to: ISLFCPFEWFGICFK*QRDVSNRVQRLSYF Trigger: AAAATAAGAAAGACGTTGAACCCTATTACTCACATCTCTTTGTCATTTGAAGCAGATCCCGAACCACTCAAAAGGACAAAACAAGGAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000666310.1 ENST00000670711.1 |
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| CDS GCA 72 bp | GCAGGCTCGGAGCCGAGCCGGAGGGGGCGCGGAGGCTaGTCGGAGGGTCCAGACTTCTGCACCGGGATTCCG | + |
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Preference number: 6 (lower is better) Translates to: AGSEPSRRGRGG*SEGPDFCTGIP Trigger: CGGAATCCCGGTGCAGAAGTCTGGACCCTCCGAGCAGCCTCCGCGCCCCCTCCGGCTCGGCTCCGAGCCTGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS GCA 72 bp | GGTCCAGAGTGGGTTTCCTGCCCGCGCGGATCCGCCTaGCCACCGCGCGTGCCCCGCCTCTCTCCCAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GPEWVSCPRGSA*PPRVPRLSPKS Trigger: GCTCTTGGGAGAGAGGCGGGGCACGCGCGGTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CCA 72 bp | GCCGCAGTGGCGTCCTGGAGCCCTCCTCAGGTGAGCTaGAGCTGCCCGGCTCGGCAGCGGGAAGGTGAGACG | + |
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Preference number: 6 (lower is better) Translates to: AAVASWSPPQVS*SCPARQREGET Trigger: CGTCTCACCTTCCCGCTGCCGAGCCGGGCAGCTCCAGCTCACCTGAGGAGGGCTCCAGGACGCCACTGCGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS GCA 72 bp | CTTCTGCACCGGGATTCCGCGAGACCCTCGGGCCGTTaGCCCAGGGAGCGTGACCCCGCGGCCTCCTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LLHRDSARPSGR*PRERDPAASLS Trigger: TGACAAGGAGGCCGCGGGGTCACGCTCCCTGGGGCAACGGCCCGAGGGTCTCGCGGAATCCCGGTGCAGAAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CAA 90 bp | CTCTCCGCCGCGCAGCCTCCGCTCCCTCCACATCAGGCACGGCGCTaGATTGACATGAGGGCCCGCCCAATCCCAGTGCGGCAGAGACCG | + |
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Preference number: 6 (lower is better) Translates to: LSAAQPPLPPHQARR*IDMRARPIPVRQRP Trigger: CGGTCTCTGCCGCACTGGGATTGGGCGGGCCCTCATGTCAATCAAGCGCCGTGCCTGATGTGGAGGGAGCGGAGGCTGCGCGGCGGAGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS TCA 72 bp | GCCTGTTACTCGCTGCGTCGCTTCCTCTTCTCGCGCTaGGTTAGCCCCGGGGGCGCCGTCTGCAGGCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: ACYSLRRFLFSR*VSPGGAVCRLG Trigger: TCCGAGCCTGCAGACGGCGCCCCCGGGGCTAACTCAGCGCGAGAAGAGGAAGCGACGCAGCGAGTAACAGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CAA 72 bp | ATGAGGGCCCGCCCAATCCCAGTGCGGCAGAGACCGTaGTCGCGTCAGGGACCGGGGAAGGGGGCGACTGAA | + |
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Preference number: 6 (lower is better) Translates to: MRARPIPVRQRP*SRQGPGKGATE Trigger: TTCAGTCGCCCCCTTCCCCGGTCCCTGACGCGACAACGGTCTCTGCCGCACTGGGATTGGGCGGGCCCTCAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CAA 72 bp | GCGCAGCCTCCGCTCCCTCCACATCAGGCACGGCGCTaGATTGACATGAGGGCCCGCCCAATCCCAGTGCGG | + |
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Preference number: 6 (lower is better) Translates to: AQPPLPPHQARR*IDMRARPIPVR Trigger: CCGCACTGGGATTGGGCGGGCCCTCATGTCAATCAAGCGCCGTGCCTGATGTGGAGGGAGCGGAGGCTGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS TCA 72 bp | GGTGAGCTGGAGCTGCCCGGCTCGGCAGCGGGAAGGTaGGACGGCCTTGTTGGCAGGCAGACACACACACAC | + |
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Preference number: 6 (lower is better) Translates to: GELELPGSAAGR*DGLVGRQTHTH Trigger: GTGTGTGTGTGTCTGCCTGCCAACAAGGCCGTCTCACCTTCCCGCTGCCGAGCCGGGCAGCTCCAGCTCACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS TCA 72 bp | GCCTCCGCTCCCTCCACATCAGGCACGGCGCTTGATTaGCATGAGGGCCCGCCCAATCCCAGTGCGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: ASAPSTSGTALD*HEGPPNPSAAE Trigger: CTCTGCCGCACTGGGATTGGGCGGGCCCTCATGTCAATCAAGCGCCGTGCCTGATGTGGAGGGAGCGGAGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS GCA 72 bp | ACTGAACCTATCAGATTGGGTCCAGAGTGGGTTTCCTaGCCGCGCGGATCCGCCTGCCCACCGCGCGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: TEPIRLGPEWVS*PRGSACPPRVP Trigger: GGGCACGCGCGGTGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CAA 90 bp | TTGTCGCGTCAGGGACCGGGGAAGGGGGCGACTGAACCTATCAGATaGGGTCCAGAGTGGGTTTCCTGCCCGCGCGGATCCGCCTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: LSRQGPGKGATEPIR*GPEWVSCPRGSACP Trigger: TGGGCAGGCGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCTGACGCGACAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CCA 72 bp | AGGGACCGGGGAAGGGGGCGACTGAACCTATCAGATTaGGTCCAGAGTGGGTTTCCTGCCCGCGCGGATCCG | + |
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Preference number: 6 (lower is better) Translates to: RDRGRGRLNLSD*VQSGFPARADP Trigger: CGGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CAA 72 bp | CAGGGACCGGGGAAGGGGGCGACTGAACCTATCAGATaGGGTCCAGAGTGGGTTTCCTGCCCGCGCGGATCC | + |
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Preference number: 6 (lower is better) Translates to: QGPGKGATEPIR*GPEWVSCPRGS Trigger: GGATCCGCGCGGGCAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS CAA 90 bp | TTGATTGACATGAGGGCCCGCCCAATCCCAGTGCGGCAGAGACCGTaGTCGCGTCAGGGACCGGGGAAGGGGGCGACTGAACCTATCAGA | + |
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Preference number: 6 (lower is better) Translates to: LIDMRARPIPVRQRP*SRQGPGKGATEPIR Trigger: TCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCTGACGCGACAACGGTCTCTGCCGCACTGGGATTGGGCGGGCCCTCATGTCAATCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS TCA 72 bp | ACCGTTGTCGCGTCAGGGACCGGGGAAGGGGGCGACTaGACCTATCAGATTGGGTCCAGAGTGGGTTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: TVVASGTGEGGD*TYQIGSRVGFL Trigger: CAGGAAACCCACTCTGGACCCAATCTGATAGGTTCAGTCGCCCCCTTCCCCGGTCCCTGACGCGACAACGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000663856.1 ENST00000666310.1 |
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| CDS GCA 72 bp | TCAGTCCGCTGTCCGTCCATACAGCCTGTTACTCGCTaGGTCGCTTCCTCTTCTCGCGCTGAGTTAGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: SVRCPSIQPVTR*VASSSRAELAP Trigger: CGGGGCTAACTCAGCGCGAGAAGAGGAAGCGACGCAGCGAGTAACAGGCTGTATGGACGGACAGCGGACTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CAA 90 bp | GAAGCTCCCAGAGCAGTGGGGGCTGAACTCAGGACACAGTCATTTTaGCTGTTAAGTCTCTCCTGCGGCGCTGAGGAGGCAGGCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: EAPRAVGAELRTQSF*LLSLSCGAEEAGSK Trigger: CTTTGAGCCTGCCTCCTCAGCGCCGCAGGAGAGACTTAACAGCAAAAATGACTGTGTCCTGAGTTCAGCCCCCACTGCTCTGGGAGCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000661609.1 ENST00000663856.1 ENST00000666310.1 ENST00000666660.1 ENST00000667524.1 |
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| CDS TCA 72 bp | TTGTCGCTCCCCGCTCCTAAGAACCTTCGGCTGGGATaGCATTCTTCAGGTGCAGAAACCAGGGGGAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LSLPAPKNLRLG*HSSGAETRGKL Trigger: GAGCTTCCCCCTGGTTTCTGCACCTGAAGAATGTCATCCCAGCCGAAGGTTCTTAGGAGCGGGGAGCGACAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000661609.1 ENST00000663856.1 ENST00000666310.1 ENST00000666660.1 ENST00000667524.1 |
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| CDS CCA 72 bp | TCCTGGCCAGGCCTTTCTGACAATCCTGGGATACCCTaGGGCCAGTATAGAGTTCAAGGGCAGACCAGACTG | + |
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Preference number: 6 (lower is better) Translates to: SWPGLSDNPGIP*GQYRVQGQTRL Trigger: CAGTCTGGTCTGCCCTTGAACTCTATACTGGCCCCAGGGTATCCCAGGATTGTCAGAAAGGCCTGGCCAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000666310.1 ENST00000670711.1 |
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| CDS CCA 72 bp | TTTCTTTGTCGCTCCCCGCTCCTAAGAACCTTCGGCTaGGATGACATTCTTCAGGTGCAGAAACCAGGGGGA | + |
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Preference number: 6 (lower is better) Translates to: FLCRSPLLRTFG*DDILQVQKPGG Trigger: TCCCCCTGGTTTCTGCACCTGAAGAATGTCATCCCAGCCGAAGGTTCTTAGGAGCGGGGAGCGACAAAGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000661609.1 ENST00000663856.1 ENST00000666310.1 ENST00000666660.1 ENST00000667524.1 |
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| CDS GCA 72 bp | CCTCTTCATAACACTACTGCCGCCAAGAATGTAAGCTaGCCAAGCACGAGGACACTTTTAGAGGGCCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: PLHNTTAAKNVS*PSTRTLLEGPQ Trigger: CTGAGGGCCCTCTAAAAGTGTCCTCGTGCTTGGGCAGCTTACATTCTTGGCGGCAGTAGTGTTATGAAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470236.2 ENST00000666310.1 ENST00000667524.1 |
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| CDS TCA 72 bp | ACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTCTGGCTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: TPCESLSEELEP*YWFRALVSGSE Trigger: TTCGGAGCCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470236.2 |
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| CDS TCA 72 bp | GTAGACACCTCTGCCTTAGTGGGCACTTACCCCATGTaGATCCTTGTCAGAGGAACTGGAGCCATGATACTG | + |
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Preference number: 6 (lower is better) Translates to: VDTSALVGTYPM*ILVRGTGAMIL Trigger: CAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTAAGTGCCCACTAAGGCAGAGGTGTCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS GCA 72 bp | CTAGTTTCCTGGGGCCACGTGAATACTGTTAGTTCCTaGCAAGGAGAGCTGCCTACTAGGCAAGAAGACCAA | + |
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Preference number: 6 (lower is better) Translates to: LVSWGHVNTVSS*QGELPTRQEDQ Trigger: TTGGTCTTCTTGCCTAGTAGGCAGCTCTCCTTGGCAGGAACTAACAGTATTCACGTGGCCCCAGGAAACTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS CCA 72 bp | GGTTCGGGATCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GSGSHVNPCQRN*SHDTGLEHSSL Trigger: CAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGATCCCGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667524.1 |
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| CDS TCA 72 bp | ACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTTGATGCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: TPCESLSEELEP*YWFRALVLMPQ Trigger: CTGAGGCATCAAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666310.1 |
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| CDS TCA 72 bp | ACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTCTGAGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: TPCESLSEELEP*YWFRALVSEEG Trigger: TCCTTCCTCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS TCA 72 bp | ATCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTCTGGCTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: IPCESLSEELEP*YWFRALVSGSE Trigger: TTCGGAGCCAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667524.1 |
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| CDS CCA 72 bp | CCTGGTTCTTCTAAGCAAGAGGATGTATTTGCAAGATaGTTGGCAGGGTCAGGAGTGCAGTCAGTGGCTATG | + |
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Preference number: 6 (lower is better) Translates to: PGSSKQEDVFAR*LAGSGVQSVAM Trigger: CATAGCCACTGACTGCACTCCTGACCCTGCCAACCATCTTGCAAATACATCCTCTTGCTTAGAAGAACCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000666310.1 |
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| CDS TCA 72 bp | ACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: TPCESLSEELEP*YWFRALVYFSQ Trigger: CTGGGAGAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000461864.6 ENST00000663856.1 |
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| CDS GCA 72 bp | CTTAAACCGCAATATTGGCACTTCTCTGGACTAGCCTaGTACCCACTCTGCAAATTTTGGACATGCCGACGT | + |
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Preference number: 6 (lower is better) Translates to: LKPQYWHFSGLA*YPLCKFWTCRR Trigger: ACGTCGGCATGTCCAAAATTTGCAGAGTGGGTAGCAGGCTAGTCCAGAGAAGTGCCAATATTGCGGTTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CCA 72 bp | GAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: ELQPHVNPCQRN*SHDTGLEHSSL Trigger: CAGAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000470236.2 ENST00000670711.1 |
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| CDS CCA 72 bp | GGGCACTTACCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTATT | + |
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Preference number: 6 (lower is better) Translates to: GHLPHVNPCQRN*SHDTGLEHSSI Trigger: AATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTAAGTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CCA 72 bp | GGTTCGGGATCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTATT | + |
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Preference number: 6 (lower is better) Translates to: GSGSHVNPCQRN*SHDTGLEHSSI Trigger: AATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGATCCCGAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661609.1 ENST00000666660.1 |
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| CDS TCA 72 bp | ATCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: IPCESLSEELEP*YWFRALVYFSQ Trigger: CTGGGAGAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661609.1 |
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| CDS CAA 72 bp | AAGTCCCAAAATGTAAGGCTCTCCCACATAAGGGATTaGTGTACTGAGGAGGCCCTCCAGAATTTACCTGAG | + |
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Preference number: 6 (lower is better) Translates to: KSQNVRLSHIRD*CTEEALQNLPE Trigger: CTCAGGTAAATTCTGGAGGGCCTCCTCAGTACACAAATCCCTTATGTGGGAGAGCCTTACATTTTGGGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS CAA 90 bp | GTGGACTCTAAGTCCCAAAATGTAAGGCTCTCCCACATAAGGGATTaGTGTACTGAGGAGGCCCTCCAGAATTTACCTGAGATAACTTAC | + |
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Preference number: 6 (lower is better) Translates to: VDSKSQNVRLSHIRD*CTEEALQNLPEITY Trigger: GTAAGTTATCTCAGGTAAATTCTGGAGGGCCTCCTCAGTACACAAATCCCTTATGTGGGAGAGCCTTACATTTTGGGACTTAGAGTCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS CCA 72 bp | GAATTGCAACCCCATGTGAATCCTTGTCAGAGGAACTaGAGCCATGATACTGGTTTAGAGCACTCGTCTATT | + |
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Preference number: 6 (lower is better) Translates to: ELQPHVNPCQRN*SHDTGLEHSSI Trigger: AATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGTTGCAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000461864.6 ENST00000474250.5 |
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| CDS CCA 72 bp | AGCCATAGGAATGAGGTGGTCTCAGGCCTCATATTCTaGGATCTAGCTTGGGAAATAGTTCCTCTTTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: SHRNEVVSGLIF*DLAWEIVPLLD Trigger: ATCCAAAAGAGGAACTATTTCCCAAGCTAGATCCCAGAATATGAGGCCTGAGACCACCTCATTCCTATGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CAA 72 bp | CCTCCAAGCAAGAGGGAATTCTTTAGCCAACAGACTTaGGACTTAAACCGCAATATTGGCACTTCTCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: PPSKREFFSQQT*DLNRNIGTSLD Trigger: GTCCAGAGAAGTGCCAATATTGCGGTTTAAGTCCAAAGTCTGTTGGCTAAAGAATTCCCTCTTGCTTGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS TCA 72 bp | ACCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTTCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: TPCESLSEELEP*YWFRALVYFLV Trigger: AACAAGAAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000474250.5 |
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| CDS TCA 72 bp | GTCCAATCAGTTGAAAGCCTGAATAGCACAAAAGACTaGCCTCCTCCAAGCAAGAGGGAATTCTTTAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: VQSVESLNSTKD*PPPSKREFFSQ Trigger: TTGGCTAAAGAATTCCCTCTTGCTTGGAGGAGGTCAGTCTTTTGTGCTATTCAGGCTTTCAACTGATTGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS GCA 72 bp | TTTAGAGGGCCCTCAGACTCAGCTTCTTTTGGTCTGTaGCTCAAATTAAGCACATGTCTTACATTTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: FRGPSDSASFGL*LKLSTCLTFLP Trigger: TGGGAGAAATGTAAGACATGTGCTTAATTTGAGGCACAGACCAAAAGAAGCTGAGTCTGAGGGCCCTCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470236.2 ENST00000666310.1 ENST00000667524.1 |
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| CDS TCA 72 bp | TACTGGTTTAGAGCACTCGTCTATTTTCTTGTTGCCTaGTTCTGGTTAGTCCCTGATCCACTCAGCACTAAT | + |
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Preference number: 6 (lower is better) Translates to: YWFRALVYFLVA*FWLVPDPLSTN Trigger: ATTAGTGCTGAGTGGATCAGGGACTAACCAGAATCAGGCAACAAGAAAATAGACGAGTGCTCTAAACCAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000474250.5 ENST00000666660.1 |
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| CDS TCA 72 bp | ATCCCATGTGAATCCTTGTCAGAGGAACTGGAGCCATaGTACTGGTTTAGAGCACTCGTCTATTTTCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: IPCESLSEELEP*YWFRALVYFLV Trigger: AACAAGAAAATAGACGAGTGCTCTAAACCAGTATCATGGCTCCAGTTCCTCTGACAAGGATTCACATGGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666660.1 |
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| CDS CAA 90 bp | TCAGGCCTCATATTCTGGGATCTAGCTTGGGAAATAGTTCCTCTTTaGGATAAAAATAGTCATTTTAAGCTCTCCACACTGGATGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: SGLIFWDLAWEIVPL*DKNSHFKLSTLDVP Trigger: GGGCACATCCAGTGTGGAGAGCTTAAAATGACTATTTTTATCCAAAAGAGGAACTATTTCCCAAGCTAGATCCCAGAATATGAGGCCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS TCA 72 bp | TTTTGTCCTTTTGAGTGGTTCGGGATCTGCTTCAAATaGCAAAGAGATGTGAGTAATAGGGTTCAACGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FCPFEWFGICFK*QRDVSNRVQRL Trigger: AAGACGTTGAACCCTATTACTCACATCTCTTTGTCATTTGAAGCAGATCCCGAACCACTCAAAAGGACAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000461864.6 ENST00000470236.2 ENST00000474250.5 ENST00000666310.1 ENST00000670711.1 |
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| CDS CAA 72 bp | CCAATAGATTATAAGCCATTACTATCACTATTGGTTTaGATGCTGAAAATGCTCCAGTTCCAGCCATTGGGA | + |
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Preference number: 6 (lower is better) Translates to: PIDYKPLLSLLV*MLKMLQFQPLG Trigger: TCCCAATGGCTGGAACTGGAGCATTTTCAGCATCAAAACCAATAGTGATAGTAATGGCTTATAATCTATTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661609.1 |
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| CDS CAA 90 bp | CCCATTGTTCAAGCAGACACCAAACTGTGCATACTTTTAATTCATTaGTATCCACTATTTTTGGTGGAAACATTTGTAGCTAAGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: PIVQADTKLCILLIH*YPLFLVETFVAKQA Trigger: AGCCTGCTTAGCTACAAATGTTTCCACCAAAAATAGTGGATACAAATGAATTAAAAGTATGCACAGTTTGGTGTCTGCTTGAACAATGGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CAA 72 bp | TGTAGAAAGTTACAGTGGCTAAACTACATAGTGGTCTaGCATTGGGAGAGATATCAAAACACTGTAAGTATG | + |
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Preference number: 6 (lower is better) Translates to: CRKLQWLNYIVV*HWERYQNTVSM Trigger: CATACTTACAGTGTTTTGATATCTCTCCCAATGCAAGACCACTATGTAGTTTAGCCACTGTAACTTTCTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS CAA 90 bp | GACACCAAACTGTGCATACTTTTAATTCATTTGTATCCACTATTTTaGGTGGAAACATTTGTAGCTAAGCAGGCTAGACTTCTGGTTCTA | + |
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Preference number: 6 (lower is better) Translates to: DTKLCILLIHLYPLF*VETFVAKQARLLVL Trigger: TAGAACCAGAAGTCTAGCCTGCTTAGCTACAAATGTTTCCACCAAAAATAGTGGATACAAATGAATTAAAAGTATGCACAGTTTGGTGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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| CDS CAA 90 bp | CTATTTTATCCAATAGATTATAAGCCATTACTATCACTATTGGTTTaGATGCTGAAAATGCTCCAGTTCCAGCCATTGGGATACCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LFYPIDYKPLLSLLV*MLKMLQFQPLGYPS Trigger: TGAAGGGTATCCCAATGGCTGGAACTGGAGCATTTTCAGCATCAAAACCAATAGTGATAGTAATGGCTTATAATCTATTGGATAAAATAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661609.1 |
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| CDS CAA 90 bp | AGAGCAGATTGTAGAAAGTTACAGTGGCTAAACTACATAGTGGTCTaGCATTGGGAGAGATATCAAAACACTGTAAGTATGAAATCATTA | + |
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Preference number: 6 (lower is better) Translates to: RADCRKLQWLNYIVV*HWERYQNTVSMKSL Trigger: TAATGATTTCATACTTACAGTGTTTTGATATCTCTCCCAATGCAAGACCACTATGTAGTTTAGCCACTGTAACTTTCTACAATCTGCTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670711.1 |
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| CDS CAA 72 bp | CTGTGCATACTTTTAATTCATTTGTATCCACTATTTTaGGTGGAAACATTTGTAGCTAAGCAGGCTAGACTT | + |
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Preference number: 6 (lower is better) Translates to: LCILLIHLYPLF*VETFVAKQARL Trigger: AAGTCTAGCCTGCTTAGCTACAAATGTTTCCACCAAAAATAGTGGATACAAATGAATTAAAAGTATGCACAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663856.1 |
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