Pregenerated sensors for NBPF1 (Homo sapiens)
Ensembl gene IDs: ENSG00000219481Ensembl transcript IDs: ENST00000392963.5, ENST00000430580.6, ENST00000449853.2, ENST00000599069.5, ENST00000599908.1
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTaGAGTGTTCCCGGCAAAACGTTTAGGCTGAATTTA | + |
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Preference number: 3 (lower is better) Translates to: RWAKVGNSQHCL*SVPGKTFRLNL Trigger: TAAATTCAGCCTAAACGTTTTGCCGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CCA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTCCTCGGCCCAGCTCCTaGCGCCGCAGATCGCCCGTC | + |
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Preference number: 4 (lower is better) Translates to: FSARRWAKVGNSQHCLCSPRPSS*RRRSPV Trigger: GACGGGCGATCTGCGGCGCCAGGAGCTGGGCCGAGG...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR TCA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTCCATCAGCATGCCGCTaGGCCTGGGGCATGGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: FSARRWAKVGNSQHCLCSPSACR*AWGMVG Trigger: ACCCACCATGCCCCAGGCTCAGCGGCATGCTGATGG...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR TCA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTGGTAACCGTCTGAGTTaGGGGTGCGGTGGGTTGACC | + |
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Preference number: 4 (lower is better) Translates to: FSARRWAKVGNSQHCLCSGNRLS*GCGGLT Trigger: GGTCAACCCACCGCACCCTCAACTCAGACGGTTACC...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| 3UTR CAA 72 bp | CAAACTAGACCTTCTCTGCCCGCAGATGGGCTAAGGTaGGAAACTCACAGCATTGTCTCTGCAGTGTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: QTRPSLPADGLR*ETHSIVSAVFP Trigger: CGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAAGGTCTAGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CCA 90 bp | GATATCATGATAATGCTGATGGACAAACTAGACCTTCTCTGCCCGCAGATGGGCCCTTCGGCATCTCCCTaGGGGCAGACGATTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: DIMIMLMDKLDLLCPQMGPSASP*GQTISA Trigger: TGCAGAAATCGTCTGCCCCCAGGGAGATGCCGAAGG...GCCCATCTGCGGGCAGAGAAGGTCTAGTTTGTCCATCAGCATTATCATGATATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR TCA 90 bp | GATATCATGATAATGCTGATGGACAAACTAGACCTTCTCTGCCCGCAGATGGGCCACACTGTCCTCCAATaGCACCTTGTCCTGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: DIMIMLMDKLDLLCPQMGHTVLQ*HLVLLN Trigger: GTTCAGCAGGACAAGGTGTCATTGGAGGACAGTGTG...GCCCATCTGCGGGCAGAGAAGGTCTAGTTTGTCCATCAGCATTATCATGATATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR TCA 90 bp | GATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTGTTCCCGGCAAAATTCCAAGGCTCCCCATaGCTGCTGAAGTTTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: DGLRLETHSIVSAVFPAKFQGSP*LLKFEF Trigger: GAATTCAAACTTCAGCAGTCATGGGGAGCCTTGGAA...TTTTGCCGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CCA 90 bp | GATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTGTTCCCGGCAAAAAGATTGGCCATCTGTTaGATCTGGCAGCTCTTGATG | + |
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Preference number: 4 (lower is better) Translates to: DGLRLETHSIVSAVFPAKRLAIC*IWQLLM Trigger: CATCAAGAGCTGCCAGATCCAACAGATGGCCAATCT...TTTTGCCGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR GCA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTGGTCTAAACAGGATTTaGCTTCAGATTGCCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: FSARRWAKVGNSQHCLCSGLNRI*LQIASE Trigger: TTCTGAGGCAATCTGAAGGCAAATCCTGTTTAGACC...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CCA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTATCTTCGTCATTTTCTaGGCTGAGCTTCTGGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: FSARRWAKVGNSQHCLCSIFVIF*AELLEK Trigger: CTTTTCCAGAAGCTCAGCCCAGAAAATGACGAAGAT...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CCA 90 bp | GATATCATGATAATGCTGATGGACAAACTAGACCTTCTCTGCCCGCAGATGGGCCAGCTTAGGAAAGATTaGCCATCTGTTGGATCTGGC | + |
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Preference number: 4 (lower is better) Translates to: DIMIMLMDKLDLLCPQMGQLRKD*PSVGSG Trigger: GCCAGATCCAACAGATGGCCAATCTTTCCTAAGCTG...GCCCATCTGCGGGCAGAGAAGGTCTAGTTTGTCCATCAGCATTATCATGATATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CCA 90 bp | CACCCTCCCAAATACTTCATTATAAGTAAGGTGTCTCTAAAAGGGACAGATCTCGGTGGGGCCAGGGACTaGGAGAATGTTTACAGCATC | + |
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Preference number: 4 (lower is better) Translates to: HPPKYFIISKVSLKGTDLGGARD*ENVYSI Trigger: GATGCTGTAAACATTCTCCCAGTCCCTGGCCCCACC...GAGATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGTATTTGGGAGGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS CCA 90 bp | GGGCGATCCTCCTCTGCTGGCTGGAGGAAGCATGCAGTGGGAACATaGGAGGCCTCTAGGAGCAGCGAGAGGCCCCTGGCTGACAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: GRSSSAGWRKHAVGT*EASRSSERPLADSQ Trigger: CTGGCTGTCAGCCAGGGGCCTCTCGCTGCTCCTAGAGGCCTCCCATGTTCCCACTGCATGCTTCCTCCAGCCAGCAGAGGAGGATCGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CCA 90 bp | TTCGTTAGGCCTCCTGCAGCTGGAGATGCAAGTAGTGCATTTTCATaGCCACCGCAGGGCCCTCAGTTTAGCATTCTTCAGAGCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: FVRPPAAGDASSAFS*PPQGPQFSILQSQH Trigger: ATGCTGGCTCTGAAGAATGCTAAACTGAGGGCCCTGCGGTGGCCATGAAAATGCACTACTTGCATCTCCAGCTGCAGGAGGCCTAACGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599908.1 |
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| CDS GCA 90 bp | TCCTTGATAAGTATGCACATGGAACCCCACATAGACTTTGAGAGCTaGACCTTTGATCAGCTGTCTCCTCACTGGTGCCCTGCCCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: SLISMHMEPHIDFES*TFDQLSPHWCPALQ Trigger: CTGCAGGGCAGGGCACCAGTGAGGAGACAGCTGATCAAAGGTGCAGCTCTCAAAGTCTATGTGGGGTTCCATGTGCATACTTATCAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS-3UTR CAA 90 bp | GATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTGTTCCCGGCAAAAGGATTTGCCTTCAGATaGCCTCAGAAACGCTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: DGLRLETHSIVSAVFPAKGFAFR*PQKRWV Trigger: CACCCAGCGTTTCTGAGGCAATCTGAAGGCAAATCC...TTTTGCCGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CAA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTTCAGAATGTAGATCATaGAGCCAGAGAGCTGACCTG | + |
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Preference number: 5 (lower is better) Translates to: FSARRWAKVGNSQHCLCSSECRS*SQRADL Trigger: CAGGTCAGCTCTCTGGCTCAATGATCTACATTCTGA...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CAA 90 bp | GATATCATGATAATGCTGATGGACAAACTAGACCTTCTCTGCCCGCAGATGGGCAAGATTGGCCATCTGTaGGATCTGGCAGCTCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: DIMIMLMDKLDLLCPQMGKIGHL*DLAALD Trigger: ATCAAGAGCTGCCAGATCCAACAGATGGCCAATCTT...GCCCATCTGCGGGCAGAGAAGGTCTAGTTTGTCCATCAGCATTATCATGATATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CAA 90 bp | TTCTCTGCCCGCAGATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTAGGACATTTCTAATTTaGAAAACCACCCTCCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: FSARRWAKVGNSQHCLCSRTFLI*KTTLPN Trigger: ATTTGGGAGGGTGGTTTTCAAAATTAGAAATGTCCT...ACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATCTGCGGGCAGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CAA 90 bp | GATGGGCTAAGGTTGGAAACTCACAGCATTGTCTCTGCAGTGTTCCCGGCAAAATTGCACTCTTCATTTTaGTATTTGTTCTGCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: DGLRLETHSIVSAVFPAKLHSSF*YLFCWL Trigger: CAACCAGCAGAACAAATACAAAAATGAAGAGTGCAA...TTTTGCCGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTTAGCCCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS-3UTR CAA 90 bp | GATATCATGATAATGCTGATGGACAAACTAGACCTTCTCTGCCCGCAGATGGGCTTGCACTCTTCATATTaGTATTTGTTCTGCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: DIMIMLMDKLDLLCPQMGLHSSY*YLFCWL Trigger: CAACCAGCAGAACAAATACAAATATGAAGAGTGCAA...GCCCATCTGCGGGCAGAGAAGGTCTAGTTTGTCCATCAGCATTATCATGATATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430580.6 |
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| CDS CCA 72 bp | TCCTCTGCTGGCTGGAGGAAGCATGCAGTGGGAACATaGGAGGCCTCTAGGAGCAGCGAGAGGCCCCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSAGWRKHAVGT*EASRSSERPLA Trigger: AGCCAGGGGCCTCTCGCTGCTCCTAGAGGCCTCCCATGTTCCCACTGCATGCTTCCTCCAGCCAGCAGAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CCA 72 bp | GGCGATCCTCCTCTGCTGGCTGGAGGAAGCATGCAGTaGGAACATGGGAGGCCTCTAGGAGCAGCGAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: GDPPLLAGGSMQ*EHGRPLGAARG Trigger: GCCTCTCGCTGCTCCTAGAGGCCTCCCATGTTCCCACTGCATGCTTCCTCCAGCCAGCAGAGGAGGATCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS GCA 72 bp | AGTGCAGGAGGGTTTCCATGCAGGGCGATCCTCCTCTaGTGGCTGGAGGAAGCATGCAGTGGGAACATGGGA | + |
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Preference number: 6 (lower is better) Translates to: SAGGFPCRAILL*WLEEACSGNMG Trigger: TCCCATGTTCCCACTGCATGCTTCCTCCAGCCAGCAGAGGAGGATCGCCCTGCATGGAAACCCTCCTGCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CCA 72 bp | GAACATGGGAGGCCTCTAGGAGCAGCGAGAGGCCCCTaGCTGACAGCCAGCAAGAAAACAGAGATCTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: EHGRPLGAARGP*LTASKKTEISV Trigger: GACTGAGATCTCTGTTTTCTTGCTGGCTGTCAGCCAGGGGCCTCTCGCTGCTCCTAGAGGCCTCCCATGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CCA 72 bp | GTGAACGTGAGTTCCTTGGAGGGACTGAGGACTTCCTaGAGAGATGTGAAGTGCAGGAGGGTTTCCATGCAG | + |
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Preference number: 6 (lower is better) Translates to: VNVSSLEGLRTS*RDVKCRRVSMQ Trigger: CTGCATGGAAACCCTCCTGCACTTCACATCTCTCCAGGAAGTCCTCAGTCCCTCCAAGGAACTCACGTTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CCA 72 bp | CCTCCTGCAGCTGGAGATGCAAGTAGTGCATTTTCATaGCCACCGCAGGGCCCTCAGTTTAGCATTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: PPAAGDASSAFS*PPQGPQFSILQ Trigger: CTGAAGAATGCTAAACTGAGGGCCCTGCGGTGGCCATGAAAATGCACTACTTGCATCTCCAGCTGCAGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599908.1 |
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| CDS GCA 72 bp | AGTATGCACATGGAACCCCACATAGACTTTGAGAGCTaGACCTTTGATCAGCTGTCTCCTCACTGGTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: SMHMEPHIDFES*TFDQLSPHWCP Trigger: AGGGCACCAGTGAGGAGACAGCTGATCAAAGGTGCAGCTCTCAAAGTCTATGTGGGGTTCCATGTGCATACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CCA 72 bp | TCTTCAGTCACCCACATAAATGGCTTCAGGGCCTTCTaGGGAAGGCCTGAAGGAAGATTTACAGCATACACT | + |
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Preference number: 6 (lower is better) Translates to: SSVTHINGFRAF*GRPEGRFTAYT Trigger: AGTGTATGCTGTAAATCTTCCTTCAGGCCTTCCCCAGAAGGCCCTGAAGCCATTTATGTGGGTGACTGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599908.1 |
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| CDS TCA 72 bp | GTGCCAGGTAACCGTCTCCAAATGTTCCTCTGGCTCTaGTATTCTGTTATTCTGGTTCCTTTTTGGCTACTT | + |
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Preference number: 6 (lower is better) Translates to: VPGNRLQMFLWL*YSVILVPFWLL Trigger: AAGTAGCCAAAAAGGAACCAGAATAACAGAATATCAGAGCCAGAGGAACATTTGGAGACGGTTACCTGGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000392963.5 |
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| CDS CCA 72 bp | AAAGGACAGAAAATACTAACGATGGCTCAGCACATGTaGTCTATCTTGCTGAATGCTCTATGTGAGTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: KGQKILTMAQHM*SILLNALCEFE Trigger: CTCAAACTCACATAGAGCATTCAGCAAGATAGACCACATGTGCTGAGCCATCGTTAGTATTTTCTGTCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CAA 72 bp | AGTACTTACAGCAATTTTATTCATCATCGCCAAAACTaGGAAGTGCCCAAGATGTCTTTCACCAAGCGAAAG | + |
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Preference number: 6 (lower is better) Translates to: STYSNFIHHRQN*EVPKMSFTKRK Trigger: CTTTCGCTTGGTGAAAGACATCTTGGGCACTTCCAAGTTTTGGCGATGATGAATAAAATTGCTGTAAGTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449853.2 |
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| CDS CAA 90 bp | AAAGGACAGAAAATACTAACGATGGCTCAGCACATGTGGTCTATCTaGCTGAATGCTCTATGTGAGTTTGAGAAGAGTTATTTGTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: KGQKILTMAQHMWSI*LNALCEFEKSYLLA Trigger: AGCTAACAAATAACTCTTCTCAAACTCACATAGAGCATTCAGCAAGATAGACCACATGTGCTGAGCCATCGTTAGTATTTTCTGTCCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS GCA 72 bp | ACAGCAATTTTATTCATCATCGCCAAAACTTGGAAGTaGCCAAGATGTCTTTCACCAAGCGAAAGAATAAAC | + |
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Preference number: 6 (lower is better) Translates to: TAILFIIAKTWK*PRCLSPSERIN Trigger: GTTTATTCTTTCGCTTGGTGAAAGACATCTTGGGCACTTCCAAGTTTTGGCGATGATGAATAAAATTGCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449853.2 |
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| CDS CCA 72 bp | TTTTCAGCAGTGAAACTCTTTCGCATGATGCTGTATTaGGGATTTAGGACATTATGTAATTGCCAAAACCCA | + |
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Preference number: 6 (lower is better) Translates to: FSAVKLFRMMLY*GFRTLCNCQNP Trigger: TGGGTTTTGGCAATTACATAATGTCCTAAATCCCCAATACAGCATCATGCGAAAGAGTTTCACTGCTGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449853.2 |
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| CDS TCA 72 bp | AGTGTAGACAAAGCTACTGAGGAGATGTCACTCCTGTaGTTGTGTTACAATTTATGGCAAAAACAAGTTAAC | + |
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Preference number: 6 (lower is better) Translates to: SVDKATEEMSLL*LCYNLWQKQVN Trigger: GTTAACTTGTTTTTGCCATAAATTGTAACACAATCACAGGAGTGACATCTCCTCAGTAGCTTTGTCTACACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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| CDS CAA 90 bp | TGGTCTATCTTGCTGAATGCTCTATGTGAGTTTGAGAAGAGTTATTaGTTAGCTGTTCTTAGATGTATTTTGCTTAAATATCGACCTGGC | + |
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Preference number: 6 (lower is better) Translates to: WSILLNALCEFEKSY*LAVLRCILLKYRPG Trigger: GCCAGGTCGATATTTAAGCAAAATACATCTAAGAACAGCTAACAAATAACTCTTCTCAAACTCACATAGAGCATTCAGCAAGATAGACCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599069.5 ENST00000599908.1 |
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