RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAT16 (Homo sapiens)

Ensembl gene IDs: ENSG00000167011

Ensembl transcript IDs: ENST00000300303.7, ENST00000443096.1, ENST00000444446.1, ENST00000455377.5

Found 275 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGCGGCTGCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTaGGTTCTTCCACCCACGAGGGGGCAGAAGGGAGAAGCCAGGAAA +
Preference number: 1 (lower is better)
Translates to: WAAALGNEAGHPTHS*VLPPTRGQKGEARK
Trigger: TTTCCTGGCTTCTCCCTTCTGCCCCCTCGTGGGTGGAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CCA 90 bp GAAGAAAAGAAACGCGGATTGGGCGGCTGCGCTCGGGAACGAGGCTaGGCATCCCACACACTCCTGAGTTCTTCCACCCACGAGGGGGCA +
Preference number: 1 (lower is better)
Translates to: EEKKRGLGGCARERG*ASHTLLSSSTHEGA
Trigger: TGCCCCCTCGTGGGTGGAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCCAATCCGCGTTTCTTTTCTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 90 bp TCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCACCCCACCCTCACTaGCATAGCCCCTGGATCCGCACTGCACGCCCTGCACTTTGGTCC +
Preference number: 1 (lower is better)
Translates to: SLWFLCFRSPPPHPH*HSPWIRTARPALWS
Trigger: GGACCAAAGTGCAGGGCGTGCAGTGCGGATCCAGGGGCTATGTCAGTGAGGGTGGGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR TCA 90 bp AGAAGGCGGCCTGGTTGGAACCAGGAGACAGCCCCTATGCCAGGCTaGGGGACCCGCCCTCCACTGTACCAAACTCTTCAGCTAGAACCA +
Preference number: 1 (lower is better)
Translates to: RRRPGWNQETAPMPG*GTRPPLYQTLQLEP
Trigger: TGGTTCTAGCTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCCTCAGCCTGGCATAGGGGCTGTCTCCTGGTTCCAACCAGGCCGCCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CCA 90 bp TATTGTCATACAATCGTGGTCACCGTGACAAGGAGGGTGGCAGCGTaGCCAGGCACAGGATGCACCCAAGGAGAGCAGCACAGTAGCAAA +
Preference number: 1 (lower is better)
Translates to: YCHTIVVTVTRRVAA*PGTGCTQGEQHSSK
Trigger: TTTGCTACTGTGCTGCTCTCCTTGGGTGCATCCTGTGCCTGGCCACGCTGCCACCCTCCTTGTCACGGTGACCACGATTGTATGACAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 90 bp AGTCACTTTGATCTTTCCCAGCCTTCTGTTTTCTCCCTCTGCCTTTaGTGTGGGGAACCAGTATTGGAGACAGCGCTGTGCAGATGCAGC +
Preference number: 1 (lower is better)
Translates to: SHFDLSQPSVFSLCL*CGEPVLETALCRCS
Trigger: GCTGCATCTGCACAGCGCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGGAAAGATCAAAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 90 bp TTTACAGTATCACTCTCTCTCTCTCTGGATTGCACACTGGGCTGGTaGTGGGAAGGAAAACAGGGACAGAAAAATGGGCACTGCGGTGTT +
Preference number: 1 (lower is better)
Translates to: FTVSLSLSLDCTLGW*WEGKQGQKNGHCGV
Trigger: AACACCGCAGTGCCCATTTTTCTGTCCCTGTTTTCCTTCCCATCACCAGCCCAGTGTGCAATCCAGAGAGAGAGAGAGTGATACTGTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 90 bp GGAAACCCCAGTGAGAGAGGCAGGCTCAGAAAGTGCATCACCAGATaGACAAGGACCCAAATGGGGGAGCATTCTAAATACATTTCATTT +
Preference number: 1 (lower is better)
Translates to: GNPSERGRLRKCITR*TRTQMGEHSKYISF
Trigger: AAATGAAATGTATTTAGAATGCTCCCCCATTTGGGTCCTTGTTCATCTGGTGATGCACTTTCTGAGCCTGCCTCTCTCACTGGGGTTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp AACCACACCACACACACACCACCACCACCACCACCACCCCGCCCGGCTCGGGTGTCAGGGAGTGGGCAATaGTGTTTGGGGGAGCTAGAG +
Preference number: 2 (lower is better)
Translates to: NHTTHTPPPPPPPRPARVSGSGQ*CLGELE
Trigger: CTCTAGCTCCCCCAAACACCATTGCCCACTCCCTGA...CACCCGAGCCGGGCGGGGTGGTGGTGGTGGTGGTGGTGTGTGTGTGGTGTGGTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR GCA 90 bp ATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGGCGGCCTGGTTGGAACCAGCGCGGATTGGGCGGCTaGGCTCGGGAACGAGGCTGG +
Preference number: 2 (lower is better)
Translates to: IPGGGNSSCTRRRPGWNQRGLGG*ARERGW
Trigger: CCAGCCTCGTTCCCGAGCGCAGCCGCCCAATCCGCG...CTGGTTCCAACCAGGCCGCCTTCTAGTGCAACTGGAATTCCCACCTCCTGGTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR GCA 90 bp TCGAACTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCCCCTGGATCCGCACTaGACGCCCTGCACTTTGGTC +
Preference number: 2 (lower is better)
Translates to: SNFQTLTCPSGSSALGVLPLDPH*TPCTLV
Trigger: GACCAAAGTGCAGGGCGTGCAGTGCGGATCCAGGGG...GAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAGTTCGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR-3UTR CCA 90 bp ATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGGCGGCCTGGTTGGAACCAGAAAAGAAACGCGGATTaGGCGGCTGCGCTCGGGAAC +
Preference number: 2 (lower is better)
Translates to: IPGGGNSSCTRRRPGWNQKRNAD*AAALGN
Trigger: GTTCCCGAGCGCAGCCGCCCAATCCGCGTTTCTTTT...CTGGTTCCAACCAGGCCGCCTTCTAGTGCAACTGGAATTCCCACCTCCTGGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp GAGATGCTCCAGCTCCGAGTGTGTCAAGTTCCGGACCGCTCACCACGCCCCTTCCAGAAATTCCTCCGGTaGATCCTCGAACTTTCAAAC +
Preference number: 2 (lower is better)
Translates to: EMLQLRVCQVPDRSPRPFQKFLR*ILELSN
Trigger: GTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTG...GAAGGGGCGTGGTGAGCGGTCCGGAACTTGACACACTCGGAGCTGGAGCATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR-3UTR TCA 90 bp AAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGGGAAGGAAGGACTCTaGAGCCTGTGCGGGGACCAG +
Preference number: 2 (lower is better)
Translates to: KGSGVQKYQEVGIPVALEGKEGL*SLCGDQ
Trigger: CTGGTCCCCGCACAGGCTTCAGAGTCCTTCCTTCCC...TTCTAGTGCAACTGGAATTCCCACCTCCTGGTATTTCTGGACACCACTCCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp CCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGAGAGGGCACTGATCTCTaGCACCAGAAGCTTGAGCAG +
Preference number: 2 (lower is better)
Translates to: PSLLFSPSAFDVGNQYWREGTDL*HQKLEQ
Trigger: CTGCTCAAGCTTCTGGTGCCAGAGATCAGTGCCCTC...TCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp TGCCCACATCTCGGATCCCATCCCAGCGAACCCCAAACTCACTGTCAACATTCTGTGGGGAACCAGTATTaGAGACAGCGCTGTGCAGAT +
Preference number: 2 (lower is better)
Translates to: CPHLGSHPSEPQTHCQHSVGNQY*RQRCAD
Trigger: ATCTGCACAGCGCTGTCTCCAATACTGGTTCCCCAC...AGAATGTTGACAGTGAGTTTGGGGTTCGCTGGGATGGGATCCGAGATGTGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 90 bp GCTAACATCATCCCACAGAGTGAAGTTCTAGGTCATGCTCTAGGCTaGGGACACCCGGGTTCTATTCGCTGGGAGGCTCCTAGCTACTTT +
Preference number: 2 (lower is better)
Translates to: ANIIPQSEVLGHALG*GHPGSIRWEAPSYF
Trigger: AAAGTAGCTAGGAGCCTCCCAGCGAATAGAACCCGGGTGTCCCAAGCCTAGAGCATGACCTAGAACTTCACTCTGTGGGATGATGTTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR TCA 90 bp AAAAGCATAAATGATCCAGAGAAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGCTGGCACCAGAAGCTTaGGCAGGGGGAGGGGATTGG +
Preference number: 2 (lower is better)
Translates to: KSINDPEKGSGVQKYQEVLAPEA*AGGGDW
Trigger: CCAATCCCCTCCCCCTGCTCAAGCTTCTGGTGCCAG...CACCTCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGATCATTTATGCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR GCA 90 bp TGCCCACATCTCGGATCCCATCCCAGCGAACCCCAAACTCACTGTCAACATTCTTTGGAGACAGCGCTGTaGAGATGCAGCTGTTACTAC +
Preference number: 2 (lower is better)
Translates to: CPHLGSHPSEPQTHCQHSLETAL*RCSCYY
Trigger: GTAGTAACAGCTGCATCTGCACAGCGCTGTCTCCAA...AGAATGTTGACAGTGAGTTTGGGGTTCGCTGGGATGGGATCCGAGATGTGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp CCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACCACTCTCTCTCTCTCTaGATTGCACACTGGGCTGGT +
Preference number: 2 (lower is better)
Translates to: PAFCFLPLPLMWGTSIGDHSLSL*IAHWAG
Trigger: ACCAGCCCAGTGTGCAATCCAGAGAGAGAGAGAGTG...GTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp AAAAGCATAAATGATCCAGAGAAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGACGCAGCGTCGGAAATaGCAGGAAAGAGGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: KSINDPEKGSGVQKYQEVTQRRK*QERGWL
Trigger: CAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGT...CACCTCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGATCATTTATGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 90 bp AGCGAACCCCAAACTCACTGTCAACATTCTCCTAGCACCTACGCATaGCCCAACAAGAAGTTCAAGCTAACATCATCCCACAGAGTGAAG +
Preference number: 2 (lower is better)
Translates to: SEPQTHCQHSPSTYA*PNKKFKLTSSHRVK
Trigger: CTTCACTCTGTGGGATGATGTTAGCTTGAACTTCTTGTTGGGCAATGCGTAGGTGCTAGGAGAATGTTGACAGTGAGTTTGGGGTTCGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 90 bp TTCGCTGGGAGGCTCCTAGCTACTTTGAATGACTTAGAAGTCACTTaGATCTTTCCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTG +
Preference number: 2 (lower is better)
Translates to: FAGRLLATLNDLEVT*IFPSLLFSPSAFDV
Trigger: CACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGGAAAGATCAAAGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCTCCCAGCGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR TCA 90 bp CTACGCATTGCCCAACAAGAAGTTCAAGCTAACATCATCCCACAGAGTGAAGTTAAGTGCATCACCAGATaGACAAGGACCCAAATGGGG +
Preference number: 2 (lower is better)
Translates to: LRIAQQEVQANIIPQSEVKCITR*TRTQMG
Trigger: CCCCATTTGGGTCCTTGTTCATCTGGTGATGCACTT...AACTTCACTCTGTGGGATGATGTTAGCTTGAACTTCTTGTTGGGCAATGCGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp TTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACAGCGCTGAACAAGGACCCAAATaGGGGAGCATTCTAAATACA +
Preference number: 2 (lower is better)
Translates to: FCFLPLPLMWGTSIGDSAEQGPK*GSILNT
Trigger: TGTATTTAGAATGCTCCCCCATTTGGGTCCTTGTTC...AGCGCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CCA 90 bp GACTTAGAAGTCACTTTGATCTTTCCCAGCCTTCTGTTTTCTCCCTCTGCCTTTTCCAGAGAAAGGGAGTaGTGTCCAGAAATACCAGGA +
Preference number: 2 (lower is better)
Translates to: DLEVTLIFPSLLFSPSAFSRERE*CPEIPG
Trigger: TCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGA...AAAGGCAGAGGGAGAAAACAGAAGGCTGGGAAAGATCAAAGTGACTTCTAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 90 bp TCTAAATACATTTCATTTTACAGTATCACTCTCTCTCTCTCTGGATaGCACACTGGGCTGGTGATGGGAAGGAAAACAGGGACAGAAAAA +
Preference number: 2 (lower is better)
Translates to: SKYISFYSITLSLSG*HTGLVMGRKTGTEK
Trigger: TTTTTCTGTCCCTGTTTTCCTTCCCATCACCAGCCCAGTGTGCAATCCAGAGAGAGAGAGAGTGATACTGTAAAATGAAATGTATTTAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CAA 90 bp GCCGACGCGCCCGGCCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCCACCACGCCCCTTCCTaGGCTCCTCCCCCGGGAGTT +
Preference number: 3 (lower is better)
Translates to: ADAPGPFHLLRCSSSECVHHAPS*APPPGV
Trigger: AACTCCCGGGGGAGGAGCCAAGGAAGGGGCGTGGTG...GACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCCGGGCGCGTCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR TCA 72 bp GCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTaGGTTCTTCCACCCACGAGGGGGCAGAAGGGAGAA +
Preference number: 3 (lower is better)
Translates to: ALGNEAGHPTHS*VLPPTRGQKGE
Trigger: TTCTCCCTTCTGCCCCCTCGTGGGTGGAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR GCA 72 bp TTAGCCGACGCGCCCGGCCCCTTCCACCTCTTGAGATaGTCCAGCTCCGAGTGTGTCAAGTTCCGGACCGCT +
Preference number: 3 (lower is better)
Translates to: LADAPGPFHLLR*SSSECVKFRTA
Trigger: AGCGGTCCGGAACTTGACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCCGGGCGCGTCGGCTAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR CCA 72 bp AAACGCGGATTGGGCGGCTGCGCTCGGGAACGAGGCTaGGCATCCCACACACTCCTGAGTTCTTCCACCCAC +
Preference number: 3 (lower is better)
Translates to: KRGLGGCARERG*ASHTLLSSSTH
Trigger: GTGGGTGGAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCCAATCCGCGTTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR GCA 72 bp GGGCAGAAGGAAGAAAAGAAACGCGGATTGGGCGGCTaGGCTCGGGAACGAGGCTGGGCATCCCACACACTC +
Preference number: 3 (lower is better)
Translates to: GQKEEKKRGLGG*ARERGWASHTL
Trigger: GAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCCAATCCGCGTTTCTTTTCTTCCTTCTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 72 bp CCTGGTTGGAACCAGGAGACAGCCCCTATGCCAGGCTaGGGGACCCGCCCTCCACTGTACCAAACTCTTCAG +
Preference number: 3 (lower is better)
Translates to: PGWNQETAPMPG*GTRPPLYQTLQ
Trigger: CTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCCTCAGCCTGGCATAGGGGCTGTCTCCTGGTTCCAACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 72 bp TTCCTCTGCTTTAGGAGTCCTCCACCCCACCCTCACTaGCATAGCCCCTGGATCCGCACTGCACGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: FLCFRSPPPHPH*HSPWIRTARPA
Trigger: TGCAGGGCGTGCAGTGCGGATCCAGGGGCTATGTCAGTGAGGGTGGGGTGGAGGACTCCTAAAGCAGAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR CCA 72 bp CATAGCCCCTGGATCCGCACTGCACGCCCTGCACTTTaGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAG +
Preference number: 3 (lower is better)
Translates to: HSPWIRTARPAL*SQSRLYFRSLQ
Trigger: CTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCAGTGCGGATCCAGGGGCTATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR CCA 72 bp CCCCCACCTAATAGTCCGCAAGTTCAGGTCAGGGAGTaGGCAATGGTGTTTGGGGGAGCTAGAGGCAAGATA +
Preference number: 3 (lower is better)
Translates to: PPPNSPQVQVRE*AMVFGGARGKI
Trigger: TATCTTGCCTCTAGCTCCCCCAAACACCATTGCCCACTCCCTGACCTGAACTTGCGGACTATTAGGTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CCA 72 bp TGGATCCTCGAACTTTCAAACGCTCACCTGTCCCTCTaGTTCCTCTGCTTTAGGAGTCCTCCACCCCACCCT +
Preference number: 3 (lower is better)
Translates to: WILELSNAHLSL*FLCFRSPPPHP
Trigger: AGGGTGGGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAGTTCGAGGATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR CCA 72 bp GGAAGGACTCTGAAGCCTGTGCGGGGACCAGTTCTTTaGAAAAACAGAGGGTGGATAACAGCAGCTCAAGGC +
Preference number: 3 (lower is better)
Translates to: GRTLKPVRGPVL*KNRGWITAAQG
Trigger: GCCTTGAGCTGCTGTTATCCACCCTCTGTTTTTCCAAAGAACTGGTCCCCGCACAGGCTTCAGAGTCCTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CAA 90 bp CCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACTCTCTCTCTCTGGATaGCACACTGGGCTGGTGATG +
Preference number: 3 (lower is better)
Translates to: PSLLFSPSAFDVGNQYWRLSLSG*HTGLVM
Trigger: CATCACCAGCCCAGTGTGCAATCCAGAGAGAGAGAG...TCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR TCA 72 bp GATCTTTCCCAGCCTTCTGTTTTCTCCCTCTGCCTTTaGTGTGGGGAACCAGTATTGGAGACAGCGCTGTGC +
Preference number: 3 (lower is better)
Translates to: DLSQPSVFSLCL*CGEPVLETALC
Trigger: GCACAGCGCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGGAAAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CCA 72 bp CACCTCCTTTGCTTTTACCCCCAGAAATTCCTCCGGTaGATCCTCGAACTTTCAAACGCTCACCTGTCCCTC +
Preference number: 3 (lower is better)
Translates to: HLLCFYPQKFLR*ILELSNAHLSL
Trigger: GAGGGACAGGTGAGCGTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTAAAAGCAAAGGAGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR TCA 72 bp AGTGAGAGAGGCAGGCTCAGAAAGTGCATCACCAGATaGACAAGGACCCAAATGGGGGAGCATTCTAAATAC +
Preference number: 3 (lower is better)
Translates to: SERGRLRKCITR*TRTQMGEHSKY
Trigger: GTATTTAGAATGCTCCCCCATTTGGGTCCTTGTTCATCTGGTGATGCACTTTCTGAGCCTGCCTCTCTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CAA 90 bp CAAAGTTCTAAAAGCATAAATGATCCAGAGAAAGGGAGTGGTGTCCAGAAATACAGTGGGCAATGGTGTTaGGGGGAGCTAGAGGCAAGA +
Preference number: 3 (lower is better)
Translates to: QSSKSINDPEKGSGVQKYSGQWC*GELEAR
Trigger: TCTTGCCTCTAGCTCCCCCAAACACCATTGCCCACT...GTATTTCTGGACACCACTCCCTTTCTCTGGATCATTTATGCTTTTAGAACTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR GCA 72 bp TGTGGGGAACCAGTATTGGAGACAGCGCTGTGCAGATaGAGCTGTTACTACTTGCAATTAAATAGAAGACTC +
Preference number: 3 (lower is better)
Translates to: CGEPVLETALCR*SCYYLQLNRRL
Trigger: GAGTCTTCTATTTAATTGCAAGTAGTAACAGCTGCATCTGCACAGCGCTGTCTCCAATACTGGTTCCCCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR-3UTR CAA 90 bp TTCGCTGGGAGGCTCCTAGCTACTTTGAATGACTTAGAAGTCACTTTGATCTTTTGCGAAATAGCAAAGTaGTGCAAAGCAGGAGGAAAC +
Preference number: 3 (lower is better)
Translates to: FAGRLLATLNDLEVTLIFCEIAK*CKAGGN
Trigger: GTTTCCTCCTGCTTTGCACAACTTTGCTATTTCGCA...AAAGATCAAAGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCTCCCAGCGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CCA 72 bp ATACATTTCATTTTACAGTATCACTCTCTCTCTCTCTaGATTGCACACTGGGCTGGTGATGGGAAGGAAAAC +
Preference number: 3 (lower is better)
Translates to: IHFILQYHSLSL*IAHWAGDGKEN
Trigger: GTTTTCCTTCCCATCACCAGCCCAGTGTGCAATCCAGAGAGAGAGAGAGTGATACTGTAAAATGAAATGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp AACCACACCACACACACACCACCACCACCACCACCACCCCGCCCGGCTCGGGTGCGCGGATTGGGCGGCTaGGCTCGGGAACGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: NHTTHTPPPPPPPRPARVRGLGG*ARERGW
Trigger: CCAGCCTCGTTCCCGAGCGCAGCCGCCCAATCCGCG...CACCCGAGCCGGGCGGGGTGGTGGTGGTGGTGGTGGTGTGTGTGTGGTGTGGTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGTCCCGGGGGCCCAGCTaGTCGTCCCGGGTGAGCCGT +
Preference number: 4 (lower is better)
Translates to: ASEMAGKRLAGETAEGGGSRGPS*SSRVSR
Trigger: ACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGA...CCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGGCGGCTGCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTGAGTTCTTCTGCCACGTCGCCGCCTaGCTCGGACACGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: GRLRSGTRLGIPHTPEFFCHVAA*LGHGLG
Trigger: ACCGAGGCCGTGTCCGAGGCAGGCGGCGACGTGGCA...GAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp ACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGTGGCCAGCACCACCGTaGGGTCGGGGTCCCGGAGCC +
Preference number: 4 (lower is better)
Translates to: TQRRKWQERGWLGKLRKGWPAPP*GRGPGA
Trigger: GGCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCA...CCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGGCGGCTGCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTGAGTTCTTCCGCCTCCGTTGCGCTTaGCCAGCACCACCGTGCGGT +
Preference number: 4 (lower is better)
Translates to: GRLRSGTRLGIPHTPEFFRLRCA*PAPPCG
Trigger: ACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCG...GAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp GGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGCCAGGCCGCCGTAGATaGCCCCCGAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: GTSQETQRRKWQERGWLGPGRRR*PPRWPA
Trigger: TGCTGGCCATCTCGGGGGGCATCTACGGCGGCCTGG...CCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGCCAGGCCGCCGTAGATaGCCCCCGAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: GDFPGDAASEMAGKRLAGPGRRR*PPRWPA
Trigger: TGCTGGCCATCTCGGGGGGCATCTACGGCGGCCTGG...CCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp CAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGCGAGCAGAAGCGCTaGAGCAGCCCGGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: QRGLPRRRSVGNGRKEAGCEQKR*SSPATP
Trigger: GGGCGTGGCCGGGCTGCTGCAGCGCTTCTGCTCGCA...GCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp AGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGTCCCGGGTGAGCCGTaGCACCTTGACCCCCGGGTG +
Preference number: 4 (lower is better)
Translates to: RGLPRRRSVGNGRKEAGWVPGEP*HLDPRV
Trigger: CACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGAC...CCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGGGAAGCACGTCGCGCTaGACGGAGGGTGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: ASEMAGKRLAGETAEGGGGSTSR*TEGDSR
Trigger: CCTGCTGTCACCCTCCGTGCAGCGCGACGTGCTTCC...CCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCGCGGGGCCTGGCGCTaGAGGTGCCACAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: GVRGDFPGDAASEMAGKRRGAWR*RCHSSW
Trigger: CCAGCTGCTGTGGCACCTGCAGCGCCAGGCCCCGCG...CCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp TCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCGCCGGAGCCGGAGCTaGAGCCAGGGCCGAGATGCC +
Preference number: 4 (lower is better)
Translates to: SEGTSQETQRRKWQERGWRRSRS*SQGRDA
Trigger: GGCATCTCGGCCCTGGCTCCAGCTCCGGCTCCGGCG...CCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAACGCCGGAGCCGGAGCTaGAGCCAGGGCCGAGATGCC +
Preference number: 4 (lower is better)
Translates to: DFPGDAASEMAGKRLAGERRSRS*SQGRDA
Trigger: GGCATCTCGGCCCTGGCTCCAGCTCCGGCTCCGGCG...TTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GCCGACGCGCCCGGCCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCGGCCTCCACCTCCTGTaGCCGGGTTTCAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: ADAPGPFHLLRCSSSECVGLHLL*PGFRAW
Trigger: CCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCC...GACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCCGGGCGCGTCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp CAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCCCCCTCCGTGCGGGATaGGGAAGGGGCGCGTGCACA +
Preference number: 4 (lower is better)
Translates to: QRGLPRRRSVGNGRKEAGPLRAG*GRGACT
Trigger: TGTGCACGCGCCCCTTCCCCATCCCGCACGGAGGGG...GCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp GAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGCGCTGCACGGAGGGTaGCAGCAGGAGGCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: ETQRRKWQERGWLGKLRKALHGG*QQEACH
Trigger: GTGGCACGCCTCCTGCTGTCACCCTCCGTGCAGCGC...CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGTGGCCAGCACCACCGTaGGGTCGGGGTCCCGGAGCC +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKEWPAPP*GRGPGA
Trigger: GGCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCA...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGTCTTTGTCCCGGGTGAGCCGTaGCACCTTGACCCCCGGGTG +
Preference number: 4 (lower is better)
Translates to: GNGRKEAGWGNCGRGRVFVPGEP*HLDPRV
Trigger: CACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGAC...AAAGACCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAGCAGCGGCGAGAAGGTaGCAGAGGTCCGCAGCGCCG +
Preference number: 4 (lower is better)
Translates to: DFPGDAASEMAGKRLAGEAAARR*QRSAAP
Trigger: CGGCGCTGCGGACCTCTGGCACCTTCTCGCCGCTGC...TTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGTCTTTGCAGCGGCGAGAAGGTaGCAGAGGTCCGCAGCGCCG +
Preference number: 4 (lower is better)
Translates to: GNGRKEAGWGNCGRGRVFAAARR*QRSAAP
Trigger: CGGCGCTGCGGACCTCTGGCACCTTCTCGCCGCTGC...AAAGACCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAGCTGGCTCTGCACCTaGGCGCCGTCGCTACCGAAG +
Preference number: 4 (lower is better)
Translates to: GTSQETQRRKWQERGWLGSWLCT*APSLPK
Trigger: CTTCGGTAGCGACGGCGCGCAGGTGCAGAGCCAGCT...CCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGCGCGGGGCCTGGCGCTaGAGGTGCCACAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKERGAWR*RCHSSW
Trigger: CCAGCTGCTGTGGCACCTGCAGCGCCAGGCCCCGCG...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp CTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACAACGTCGGTCAGCGCTaGGGCAGCGCCGCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: LPRRRSVGNGRKEAGWGNNVGQR*GSAAAP
Trigger: CGGAGCTGCGGCGCTGCCCCAGCGCTGACCGACGTT...GTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GGATCCGCACTGCACGCCCTGCACTTTGGTCCCAAAGCAGGCTCTATTTCCGCACGCCGGAGCCGGAGCTaGAGCCAGGGCCGAGATGCC +
Preference number: 4 (lower is better)
Translates to: GSALHALHFGPKAGSISARRSRS*SQGRDA
Trigger: GGCATCTCGGCCCTGGCTCCAGCTCCGGCTCCGGCG...TGCGGAAATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCAGTGCGGATCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp AACCACACCACACACACACCACCACCACCACCACCACCCCGCCCGGCTCGGGTGCACCACGAAGTCCAATaGCTCGGCCTCAGCCTCAGG +
Preference number: 4 (lower is better)
Translates to: NHTTHTPPPPPPPRPARVHHEVQ*LGLSLR
Trigger: CCTGAGGCTGAGGCCGAGCCATTGGACTTCGTGGTG...CACCCGAGCCGGGCGGGGTGGTGGTGGTGGTGGTGGTGTGTGTGTGGTGTGGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGCGCCTCCGTTGCGCTTaGCCAGCACCACCGTGCGGT +
Preference number: 4 (lower is better)
Translates to: QETQRRKWQERGWLGKLRRLRCA*PAPPCG
Trigger: ACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCG...CCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp CTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACCGGACACGGCCTCGGTaGGCAGCGGCGAGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: LPRRRSVGNGRKEAGWGNRTRPR*AAARRC
Trigger: GCACCTTCTCGCCGCTGCCCACCGAGGCCGTGTCCG...GTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp AGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGCGATCACGCCTCCGTTaGGCTTGGCCAGCACCACCG +
Preference number: 4 (lower is better)
Translates to: RGLPRRRSVGNGRKEAGWRSRLR*AWPAPP
Trigger: CGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCG...CCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp TTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTTGCCACGTCGCCGCCTaGCTCGGACACGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: FPGDAASEMAGKRLAGETCHVAA*LGHGLG
Trigger: ACCGAGGCCGTGTCCGAGGCAGGCGGCGACGTGGCA...AGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp TTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTCCCCTCCGTGCGGGATaGGGAAGGGGCGCGTGCACA +
Preference number: 4 (lower is better)
Translates to: FPGDAASEMAGKRLAGETPLRAG*GRGACT
Trigger: TGTGCACGCGCCCCTTCCCCATCCCGCACGGAGGGG...AGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGGCGGCTGCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTGAGTTCTTCAGTCCCAGCCCGACCTaGCAGAAGTCAGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: GRLRSGTRLGIPHTPEFFSPSPT*QKSASC
Trigger: ACAGCTGGCTGACTTCTGCCAGGTCGGGCTGGGACT...GAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GGGCGGCTGCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTGAGTTCTTCAGGAAAGAGGCTGGCTaGGGAAACTGCGGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: GRLRSGTRLGIPHTPEFFRKEAG*GNCGRG
Trigger: CCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCT...GAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGAGGAAAGAGGCTGGCTaGGGAAACTGCGGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: ASEMAGKRLAGETAEGGGRKEAG*GNCGRG
Trigger: CCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCT...CCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp AGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGCAGAGCTGCGGAAAGTaGCGAAGCGGCGGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: RRSVGNGRKEAGWGNCGRQSCGK*RSGGCP
Trigger: GGGGCAGCCGCCGCTTCGCCACTTTCCGCAGCTCTG...CCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 72 bp CAGGAGTTAGCCGACGCGCCCGGCCCCTTCCACCTCTaGAGATGCTCCAGCTCCGAGTGTGTCAAGTTCCGG +
Preference number: 4 (lower is better)
Translates to: QELADAPGPFHL*RCSSSECVKFR
Trigger: CCGGAACTTGACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCCGGGCGCGTCGGCTAACTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR TCA 90 bp TCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGAGAGTCAAAGGAGGATaGCGCGCGGGGACTCGGCCG +
Preference number: 4 (lower is better)
Translates to: SEGTSQETQRRKWQERGWRVKGG*RAGTRP
Trigger: CGGCCGAGTCCCCGCGCGTCATCCTCCTTTGACTCT...CCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp CAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGCCGGGTGCTGTCTCTTaGCCAGCTGCGAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: QETQRRKWQERGWLGKLRPGAVS*PAASRS
Trigger: GCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGG...CCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp GGGACCCGCCCTCCACTGTACCAAACTCTTCAGCTAGAACCACACCACACACACGCGCTGCACGGAGGGTaGCAGCAGGAGGCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: GTRPPLYQTLQLEPHHTHALHGG*QQEACH
Trigger: GTGGCACGCCTCCTGCTGTCACCCTCCGTGCAGCGC...GTGTGTGTGGTGTGGTTCTAGCTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp CCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGTCAGCCAGCTGTaGCCACAGCTGGGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: PGDAASEMAGKRLAGETAEVSQL*PQLGLQ
Trigger: CTGGAGCCCCAGCTGTGGTCACAGCTGGCTGACTTC...CGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp AGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGCACAGCAGCTGGCTCTaGACCTGCGCGCCGTCGCTA +
Preference number: 4 (lower is better)
Translates to: RRSVGNGRKEAGWGNCGRHSSWL*TCAPSL
Trigger: TAGCGACGGCGCGCAGGTGCAGAGCCAGCTGCTGTG...CCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp GGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGAGGAGACAGCCCCTATaGCAGGCTGAGGGACCCGCC +
Preference number: 4 (lower is better)
Translates to: GVRGDFPGDAASEMAGKRRRQPL*QAEGPA
Trigger: GGCGGGTCCCTCAGCCTGGCATAGGGGCTGTCTCCT...CCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp AGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGATGATGGTCCCGCCTaGAAGCACGTCGCGCTGCAC +
Preference number: 4 (lower is better)
Translates to: RGLPRRRSVGNGRKEAGWDDGPA*KHVALH
Trigger: GTGCAGCGCGACGTGCTTCCAGGCGGGACCATCATC...CCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp TTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTAGAGTCAAAGGAGGATaGCGCGCGGGGACTCGGCCG +
Preference number: 4 (lower is better)
Translates to: FPGDAASEMAGKRLAGETRVKGG*RAGTRP
Trigger: CGGCCGAGTCCCCGCGCGTCATCCTCCTTTGACTCT...AGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp CAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGCGAAGGCGTCGATGTTaGGATAGCGCCAAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: QRRKWQERGWLGKLRKGARRRRC*DSAKCR
Trigger: ACGGCACTTGGCGCTATCTCAACATCGACGCCTTCG...CGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp TCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGGGGAAGGAAGGACTCTaGAGCCTGTGCGGGGACCAG +
Preference number: 4 (lower is better)
Translates to: SEGTSQETQRRKWQERGWGKEGL*SLCGDQ
Trigger: CTGGTCCCCGCACAGGCTTCAGAGTCCTTCCTTCCC...CCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp GACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAACTGGCACCAGAAGCTTaGGCAGGGGGAGGGGATTGG +
Preference number: 4 (lower is better)
Translates to: DFPGDAASEMAGKRLAGELAPEA*AGGGDW
Trigger: CCAATCCCCTCCCCCTGCTCAAGCTTCTGGTGCCAG...TTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp CTGCACGCCCTGCACTTTGGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAGACCACCCCACCCTCACTaGCATAGCCCCTGGATCCGC +
Preference number: 4 (lower is better)
Translates to: LHALHFGPKAGSISAASRPPHPH*HSPWIR
Trigger: GCGGATCCAGGGGCTATGTCAGTGAGGGTGGGGTGG...TCTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp TACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACGCTCACCTGTCCTGGCCAGCACCACCGTaGGGTCGGGGTCCCGGAGCC +
Preference number: 4 (lower is better)
Translates to: YPQKFLRWILELSNAHLSWPAPP*GRGPGA
Trigger: GGCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCA...GGACAGGTGAGCGTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp CCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCAAGTTCCGGACCGCCCCCTGGATCCGCACTaGACGCCCTGCACTTTGGTC +
Preference number: 4 (lower is better)
Translates to: PLPPLEMLQLRVCQVPDRPLDPH*TPCTLV
Trigger: GACCAAAGTGCAGGGCGTGCAGTGCGGATCCAGGGG...GCGGTCCGGAACTTGACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp GTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGGCCTCCACCTCCTGTaGCCGGGTTTCAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: VRGDFPGDAASEMAGKRLGLHLL*PGFRAW
Trigger: CCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCC...CAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp TGCACCCAAGGAGAGCAGCACAGTAGCAAAACCAGAGCTGCGGAAAGTGGCGAACGGACACGGCCTCGGTaGGCAGCGGCGAGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: CTQGEQHSSKTRAAESGERTRPR*AAARRC
Trigger: GCACCTTCTCGCCGCTGCCCACCGAGGCCGTGTCCG...TTCGCCACTTTCCGCAGCTCTGGTTTTGCTACTGTGCTGCTCTCCTTGGGTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGATGATGGTCCCGCCTaGAAGCACGTCGCGCTGCAC +
Preference number: 4 (lower is better)
Translates to: ETQRRKWQERGWLGKLRKDDGPA*KHVALH
Trigger: GTGCAGCGCGACGTGCTTCCAGGCGGGACCATCATC...CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp CAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCAGTCCCAGCCCGACCTaGCAGAAGTCAGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: QRGLPRRRSVGNGRKEAGSPSPT*QKSASC
Trigger: ACAGCTGGCTGACTTCTGCCAGGTCGGGCTGGGACT...GCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGTGGCAGGAAAGAGGCTaGCTGGGGAAACTGCGGAAG +
Preference number: 4 (lower is better)
Translates to: GTSQETQRRKWQERGWLGWQERG*LGKLRK
Trigger: CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCA...CCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGACGCAGCGTCGGAAATaGCAGGAAAGAGGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: GTSQETQRRKWQERGWLGTQRRK*QERGWL
Trigger: CAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGT...CCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGCGGCTTAGGGACCTCTaGGGTGGCTGTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKERLRDL*GGCATA
Trigger: AGCTGTGGCACAGCCACCTCAGAGGTCCCTAAGCCG...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp CTGCACGCCCTGCACTTTGGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAGACGGCTTAGGGACCTCTaGGGTGGCTGTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: LHALHFGPKAGSISAASRRLRDL*GGCATA
Trigger: AGCTGTGGCACAGCCACCTCAGAGGTCCCTAAGCCG...TCTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR TCA 90 bp GGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGTCTTTGCAGCGCGGACGCGTTaGATCGGACCAAAAGGATGC +
Preference number: 4 (lower is better)
Translates to: GNGRKEAGWGNCGRGRVFAARTR*IGPKGC
Trigger: GCATCCTTTTGGTCCGATTCAACGCGTCCGCGCTGC...AAAGACCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGAAGTCAGCCAGCTGTaGCCACAGCTGGGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKEEVSQL*PQLGLQ
Trigger: CTGGAGCCCCAGCTGTGGTCACAGCTGGCTGACTTC...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp GGCCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCAAGTTCCGGACCGCCCCTTCCACCTCTTaGGATGCTCCAGCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: GPFHLLRCSSSECVKFRTAPSTS*DAPAPS
Trigger: ACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGC...GGTCCGGAACTTGACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp CCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCAAGTTCCGGACCGCCGCAGACACCCCCGGTaGCAAGAGAGAGGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: PLPPLEMLQLRVCQVPDRRRHPR*QERGPF
Trigger: AAAGGGACCTCTCTCTTGGCACCGGGGGTGTCTGCG...GCGGTCCGGAACTTGACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp GAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGCGCAGACACCCCCGGTaGCAAGAGAGAGGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: ETQRRKWQERGWLGKLRKRRHPR*QERGPF
Trigger: AAAGGGACCTCTCTCTTGGCACCGGGGGTGTCTGCG...CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp CTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCACCCCCAGGCCGCCGTAGATaGCCCCCGAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: LSNAHLSLWFLCFRSPPPPGRRR*PPRWPA
Trigger: TGCTGGCCATCTCGGGGGGCATCTACGGCGGCCTGG...GGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp CCCCCACCTAATAGTCCGCAAGTTCAGGTCAGGGAGTGGGCAATGGTGTTTGGGCGATCACGCCTCCGTTaGGCTTGGCCAGCACCACCG +
Preference number: 4 (lower is better)
Translates to: PPPNSPQVQVREWAMVFGRSRLR*AWPAPP
Trigger: CGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCG...CCCAAACACCATTGCCCACTCCCTGACCTGAACTTGCGGACTATTAGGTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCGGGCACGGGGGAGCCTaGGAAATAGCAAAGTTGTGC +
Preference number: 4 (lower is better)
Translates to: QRGLPRRRSVGNGRKEAGGHGGA*EIAKLC
Trigger: GCACAACTTTGCTATTTCGCAGGCTCCCCCGTGCCC...GCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp AGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGCACCACGAAGTCCAATaGCTCGGCCTCAGCCTCAGG +
Preference number: 4 (lower is better)
Translates to: RRSVGNGRKEAGWGNCGRHHEVQ*LGLSLR
Trigger: CCTGAGGCTGAGGCCGAGCCATTGGACTTCGTGGTG...CCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGCAAACTCCCGTTCCGTaGCCACCACGAAGTCCAATG +
Preference number: 4 (lower is better)
Translates to: GDFPGDAASEMAGKRLAGQTPVP*PPRSPM
Trigger: CATTGGACTTCGTGGTGGCCACGGAACGGGAGTTTG...CCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp CAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGCAAACTCCCGTTCCGTaGCCACCACGAAGTCCAATG +
Preference number: 4 (lower is better)
Translates to: QRRKWQERGWLGKLRKGAQTPVP*PPRSPM
Trigger: CATTGGACTTCGTGGTGGCCACGGAACGGGAGTTTG...CGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGGAGGGCACTGATCTCTaGCACCAGAAGCTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: GTSQETQRRKWQERGWLGEGTDL*HQKLEQ
Trigger: CTGCTCAAGCTTCTGGTGCCAGAGATCAGTGCCCTC...CCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGAGAAGGCGGCCTGGTTaGAACCAGGAGACAGCCCCT +
Preference number: 4 (lower is better)
Translates to: ETQRRKWQERGWLGKLRKRRRPG*NQETAP
Trigger: AGGGGCTGTCTCCTGGTTCCAACCAGGCCGCCTTCT...CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CTGCACGCCCTGCACTTTGGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAGACCACGCACCCGCAGGTaGCTTCACCCCATGTCACCT +
Preference number: 4 (lower is better)
Translates to: LHALHFGPKAGSISAASRPRTRR*LHPMSP
Trigger: AGGTGACATGGGGTGAAGCCACCTGCGGGTGCGTGG...TCTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR TCA 90 bp ACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAAGCAGCGCGGACGCGTTaGATCGGACCAAAAGGATGC +
Preference number: 4 (lower is better)
Translates to: TSQETQRRKWQERGWLGKAARTR*IGPKGC
Trigger: GCATCCTTTTGGTCCGATTCAACGCGTCCGCGCTGC...TTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp CCCCCACCTAATAGTCCGCAAGTTCAGGTCAGGGAGTGGGCAATGGTGTTTGGGAGTTCACGCCCCGGGTaGGGTGATGGAGAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: PPPNSPQVQVREWAMVFGSSRPG*GDGEGR
Trigger: CCTTCCCTCTCCATCACCTCACCCGGGGCGTGAACT...CCCAAACACCATTGCCCACTCCCTGACCTGAACTTGCGGACTATTAGGTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGATGCGAGCAGAAGCGCTaGAGCAGCCCGGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: PSLLFSPSAFDVGNQYWRCEQKR*SSPATP
Trigger: GGGCGTGGCCGGGCTGCTGCAGCGCTTCTGCTCGCA...TCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp GACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAATGTCTCTTGACCAGCTaGGAGCAGAAGCGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: DFPGDAASEMAGKRLAGECLLTS*EQKRCS
Trigger: GCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACA...TTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGACCTTGACCCCCGGGTaGTGTCTCTTGACCAGCTGC +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKETLTPG*CLLTSC
Trigger: GCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGT...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp CCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACGCTCACCTGTCCCTTCACCACGCCTCCGTTaGGCTTGGCCAGCACCACCG +
Preference number: 4 (lower is better)
Translates to: PPEIPPVDPRTFKRSPVPSPRLR*AWPAPP
Trigger: CGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGGTGA...AGGGACAGGTGAGCGTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp CCCCCACCTAATAGTCCGCAAGTTCAGGTCAGGGAGTGGGCAATGGTGTTTGGGGGCCTCCACCTCCTGTaGCCGGGTTTCAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: PPPNSPQVQVREWAMVFGGLHLL*PGFRAW
Trigger: CCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCC...CCCAAACACCATTGCCCACTCCCTGACCTGAACTTGCGGACTATTAGGTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGGCTCCAGGAAGAGCTaGCACATGACGTTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: VRGDFPGDAASEMAGKRLGSRKS*HMTLRP
Trigger: TGGCCTCAACGTCATGTGCCAGCTCTTCCTGGAGCC...CAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp GGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGACGCAGCGTCGGAAATaGCAGGAAAGAGGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: GVRGDFPGDAASEMAGKRTQRRK*QERGWL
Trigger: CAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGT...CCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CCA 90 bp CTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACAAAAGAAACGCGGATTaGGCGGCTGCGCTCGGGAAC +
Preference number: 4 (lower is better)
Translates to: LPRRRSVGNGRKEAGWGNKRNAD*AAALGN
Trigger: GTTCCCGAGCGCAGCCGCCCAATCCGCGTTTCTTTT...GTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp TGCACCCAAGGAGAGCAGCACAGTAGCAAAACCAGAGCTGCGGAAAGTGGCGAAAGGAGGGTGGCAGCGTaGCCAGGCACAGGATGCACC +
Preference number: 4 (lower is better)
Translates to: CTQGEQHSSKTRAAESGERRVAA*PGTGCT
Trigger: GGTGCATCCTGTGCCTGGCCACGCTGCCACCCTCCT...TTCGCCACTTTCCGCAGCTCTGGTTTTGCTACTGTGCTGCTCTCCTTGGGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp CGGGGACCAGTTCTTTGGAAAAACAGAGGGTGGATAACAGCAGCTCAAGGCCCCCCGGGTGCTGTCTCTTaGCCAGCTGCGAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: RGPVLWKNRGWITAAQGPPGAVS*PAASRS
Trigger: GCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGG...GGGGCCTTGAGCTGCTGTTATCCACCCTCTGTTTTTCCAAAGAACTGGTCCCCG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GGCCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCAAGTTCCGGACCCAAACTCCCGTTCCGTaGCCACCACGAAGTCCAATG +
Preference number: 4 (lower is better)
Translates to: GPFHLLRCSSSECVKFRTQTPVP*PPRSPM
Trigger: CATTGGACTTCGTGGTGGCCACGGAACGGGAGTTTG...GGTCCGGAACTTGACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp AAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGGAATTCCAGTTGCACTAGAATCCCGGGGGCCCAGCTaGTCGTCCCGGGTGAGCCGT +
Preference number: 4 (lower is better)
Translates to: KGSGVQKYQEVGIPVALESRGPS*SSRVSR
Trigger: ACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGA...TTCTAGTGCAACTGGAATTCCCACCTCCTGGTATTTCTGGACACCACTCCCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGTCTTTTCAGGGAGTGGGCAATaGTGTTTGGGGGAGCTAGAG +
Preference number: 4 (lower is better)
Translates to: GNGRKEAGWGNCGRGRVFSGSGQ*CLGELE
Trigger: CTCTAGCTCCCCCAAACACCATTGCCCACTCCCTGA...AAAGACCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp ACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGGATGCCCTGCTTGGTaGTTAGGCGGTATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: TQRRKWQERGWLGKLRKGGCPAW*LGGISS
Trigger: TGAAGAAATACCGCCTAATCACCAAGCAGGGCATCC...CCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR TCA 90 bp GGGACCCGCCCTCCACTGTACCAAACTCTTCAGCTAGAACCACACCACACACACCGAAGGCGTCGATGTTaGGATAGCGCCAAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: GTRPPLYQTLQLEPHHTHRRRRC*DSAKCR
Trigger: ACGGCACTTGGCGCTATCTCAACATCGACGCCTTCG...GTGTGTGTGGTGTGGTTCTAGCTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp GCTGGGGCACGGGGGAGCCTGCGAAATAGCAAAGTTGTGCAAAGCAGGAGGAAACATCCCACACACTCCTaGGTTCTTCCACCCACGAGG +
Preference number: 4 (lower is better)
Translates to: AGARGSLRNSKVVQSRRKHPTHS*VLPPTR
Trigger: CCTCGTGGGTGGAAGAACTCAGGAGTGTGTGGGATG...TTTCCTCCTGCTTTGCACAACTTTGCTATTTCGCAGGCTCCCCCGTGCCCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp AAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGCCCCTATGCCAGGCTaGGGGACCCGCCCTCCACTG +
Preference number: 4 (lower is better)
Translates to: KGSGVQKYQEVGIPVALEAPMPG*GTRPPL
Trigger: CAGTGGAGGGCGGGTCCCTCAGCCTGGCATAGGGGC...TTCTAGTGCAACTGGAATTCCCACCTCCTGGTATTTCTGGACACCACTCCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CGGGGACCAGTTCTTTGGAAAAACAGAGGGTGGATAACAGCAGCTCAAGGCCCCCGCAGACACCCCCGGTaGCAAGAGAGAGGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: RGPVLWKNRGWITAAQGPRRHPR*QERGPF
Trigger: AAAGGGACCTCTCTCTTGGCACCGGGGGTGTCTGCG...GGGGCCTTGAGCTGCTGTTATCCACCCTCTGTTTTTCCAAAGAACTGGTCCCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp GCTGGGGCACGGGGGAGCCTGCGAAATAGCAAAGTTGTGCAAAGCAGGAGGAAATGTCTCTTGACCAGCTaGGAGCAGAAGCGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: AGARGSLRNSKVVQSRRKCLLTS*EQKRCS
Trigger: GCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACA...TTTCCTCCTGCTTTGCACAACTTTGCTATTTCGCAGGCTCCCCCGTGCCCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGAGGAAGCACGTCGCGCTaGACGGAGGGTGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: PSLLFSPSAFDVGNQYWRGSTSR*TEGDSR
Trigger: CCTGCTGTCACCCTCCGTGCAGCGCGACGTGCTTCC...TCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp GCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACAGCCACAGCAGCTGGCTCTaGACCTGCGCGCCGTCGCTA +
Preference number: 4 (lower is better)
Translates to: AFCFLPLPLMWGTSIGDSHSSWL*TCAPSL
Trigger: TAGCGACGGCGCGCAGGTGCAGAGCCAGCTGCTGTG...GCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGTTGGAGACAGCGCTGTaGAGATGCAGCTGTTACTAC +
Preference number: 4 (lower is better)
Translates to: QETQRRKWQERGWLGKLRLETAL*RCSCYY
Trigger: GTAGTAACAGCTGCATCTGCACAGCGCTGTCTCCAA...CCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp GCTGGGGCACGGGGGAGCCTGCGAAATAGCAAAGTTGTGCAAAGCAGGAGGAAACCACATTCTTCCACCTaGTGGTGTCCACCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: AGARGSLRNSKVVQSRRKPHSST*WCPPLP
Trigger: GGGCAGAGGTGGACACCAGCAGGTGGAAGAATGTGG...TTTCCTCCTGCTTTGCACAACTTTGCTATTTCGCAGGCTCCCCCGTGCCCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCACCCCCGCACTGCACGCCCTaGACTTTGGTCCCAAAGCAG +
Preference number: 4 (lower is better)
Translates to: LSNAHLSLWFLCFRSPPPPHCTP*TLVPKQ
Trigger: CTGCTTTGGGACCAAAGTGCAGGGCGTGCAGTGCGG...GGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp TTTACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACGCTCACCTGTCGCCTCCGTTGCGCTTaGCCAGCACCACCGTGCGGT +
Preference number: 4 (lower is better)
Translates to: FTPRNSSGGSSNFQTLTCRLRCA*PAPPCG
Trigger: ACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCG...ACAGGTGAGCGTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp GAAGGAAGGACTCTGAAGCCTGTGCGGGGACCAGTTCTTTGGAAAAACAGAGGGGCTCGGGAACGAGGCTaGGCATCCCACACACTCCTG +
Preference number: 4 (lower is better)
Translates to: EGRTLKPVRGPVLWKNRGARERG*ASHTLL
Trigger: CAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGC...CCCTCTGTTTTTCCAAAGAACTGGTCCCCGCACAGGCTTCAGAGTCCTTCCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCACTCTCTCTCTCTCTaGATTGCACACTGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: GVRGDFPGDAASEMAGKRHSLSL*IAHWAG
Trigger: ACCAGCCCAGTGTGCAATCCAGAGAGAGAGAGAGTG...CCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp GGGACCCGCCCTCCACTGTACCAAACTCTTCAGCTAGAACCACACCACACACACAGGAGGAAACCCCAGTaGGAGAGGCAGGCTCAGAAA +
Preference number: 4 (lower is better)
Translates to: GTRPPLYQTLQLEPHHTHRRKPQ*ERQAQK
Trigger: TTTCTGAGCCTGCCTCTCTCACTGGGGTTTCCTCCT...GTGTGTGTGGTGTGGTTCTAGCTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp CAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGCATCATCCCACAGAGTaGAGTTCTAGGTCATGCTCT +
Preference number: 4 (lower is better)
Translates to: QETQRRKWQERGWLGKLRHHPTE*SSRSCS
Trigger: AGAGCATGACCTAGAACTTCACTCTGTGGGATGATG...CCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp GAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGAAATATCGATGCCCTTaGGGCCGATGGCTTCTTGAC +
Preference number: 4 (lower is better)
Translates to: ETQRRKWQERGWLGKLRKKYRCP*GRWLLD
Trigger: GTCAAGAAGCCATCGGCCTCAAGGGCATCGATATTT...CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455377.5
CDS-3UTR GCA 90 bp TCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGTTCAGAGCTTGGCTCTaGATCTCGGGCAGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SEGTSQETQRRKWQERGWFRAWL*ISGSLL
Trigger: AAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAA...CCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR GCA 90 bp TCGAACTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCCTCCCCCGGGAGTTTaGCACGCCCCACTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SNFQTLTCPSGSSALGVLPPPGV*HAPLPL
Trigger: AAGAGGAAGTGGGGCGTGGCAAACTCCCGGGGGAGG...GAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAGTTCGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR TCA 90 bp CTCCTTTGCTTTTACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACAGAGTCAAAGGAGGATaGCGCGCGGGGACTCGGCCG +
Preference number: 4 (lower is better)
Translates to: LLCFYPQKFLRWILELSNRVKGG*RAGTRP
Trigger: CGGCCGAGTCCCCGCGCGTCATCCTCCTTTGACTCT...GTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTAAAAGCAAAGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR TCA 90 bp TGCACCCAAGGAGAGCAGCACAGTAGCAAAACCAGAGCTGCGGAAAGTGGCGAATGCACACTGGGCTGGTaGTGGGAAGGAAAACAGGGA +
Preference number: 4 (lower is better)
Translates to: CTQGEQHSSKTRAAESGECTLGW*WEGKQG
Trigger: TCCCTGTTTTCCTTCCCATCACCAGCCCAGTGTGCA...TTCGCCACTTTCCGCAGCTCTGGTTTTGCTACTGTGCTGCTCTCCTTGGGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGAAGTGCATCACCAGATaGACAAGGACCCAAATGGGG +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKEKCITR*TRTQMG
Trigger: CCCCATTTGGGTCCTTGTTCATCTGGTGATGCACTT...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGTTCTCCCTCTGCCTTTaGTGTGGGGAACCAGTATTG +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKEFSLCL*CGEPVL
Trigger: CAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAA...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGAACCTTGACCCCCGGGTaGTGTCTCTTGACCAGCTGC +
Preference number: 4 (lower is better)
Translates to: PSLLFSPSAFDVGNQYWRTLTPG*CLLTSC
Trigger: GCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGT...TCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp TCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTAGCACCTACGCATTaGCCAACAAGAAGTTCAAGC +
Preference number: 4 (lower is better)
Translates to: SEGTSQETQRRKWQERGWLAPTH*PTRSSS
Trigger: GCTTGAACTTCTTGTTGGGCAATGCGTAGGTGCTAG...CCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GAAGGAAGGACTCTGAAGCCTGTGCGGGGACCAGTTCTTTGGAAAAACAGAGGGTGGCAGGAAAGAGGCTaGCTGGGGAAACTGCGGAAG +
Preference number: 4 (lower is better)
Translates to: EGRTLKPVRGPVLWKNRGWQERG*LGKLRK
Trigger: CTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCA...CCCTCTGTTTTTCCAAAGAACTGGTCCCCGCACAGGCTTCAGAGTCCTTCCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp ATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGGCGGCCTGGTTGGAACCAGGTTCAGGTCAGGGAGTaGGCAATGGTGTTTGGGGGA +
Preference number: 4 (lower is better)
Translates to: IPGGGNSSCTRRRPGWNQVQVRE*AMVFGG
Trigger: TCCCCCAAACACCATTGCCCACTCCCTGACCTGAAC...CTGGTTCCAACCAGGCCGCCTTCTAGTGCAACTGGAATTCCCACCTCCTGGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCACCCGCACGCCCTGCACTTTaGTCCCAAAGCAGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: LSNAHLSLWFLCFRSPPPARPAL*SQSRLY
Trigger: ATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGC...GGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR CAA 72 bp ATCCCACAGAGTGAAGTTCTAGGTCATGCTCTAGGCTaGGGACACCCGGGTTCTATTCGCTGGGAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: IPQSEVLGHALG*GHPGSIRWEAP
Trigger: AGGAGCCTCCCAGCGAATAGAACCCGGGTGTCCCAAGCCTAGAGCATGACCTAGAACTTCACTCTGTGGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp ACTTTGGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAGAGGAAGGCTGGGGATTCAGAGCTTGGCTCTaGATCTCGGGCAGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: TLVPKQALFPQPPEEGWGFRAWL*ISGSLL
Trigger: AAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAA...TCCCCAGCCTTCCTCTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp GCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACAGCGCTGGTGTCCACCTCTaGCCACATCTCGGATCCCAT +
Preference number: 4 (lower is better)
Translates to: AFCFLPLPLMWGTSIGDSAGVHL*PHLGSH
Trigger: ATGGGATCCGAGATGTGGGCAGAGGTGGACACCAGC...GCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp CTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCACCCTTCCACCTCTTGAGATaGTCCAGCTCCGAGTGTGTC +
Preference number: 4 (lower is better)
Translates to: LSNAHLSLWFLCFRSPPPFHLLR*SSSECV
Trigger: GACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAA...GGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGCGGGGACCAGTTCTTTaGAAAAACAGAGGGTGGATA +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKERGPVL*KNRGWI
Trigger: TATCCACCCTCTGTTTTTCCAAAGAACTGGTCCCCG...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGGAACAAGGACCCAAATaGGGGAGCATTCTAAATACA +
Preference number: 4 (lower is better)
Translates to: QETQRRKWQERGWLGKLREQGPK*GSILNT
Trigger: TGTATTTAGAATGCTCCCCCATTTGGGTCCTTGTTC...CCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGTCCAGAGAAAGGGAGTaGTGTCCAGAAATACCAGGA +
Preference number: 4 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKESRERE*CPEIPG
Trigger: TCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGA...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR TCA 90 bp ATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGGCGGCCTGGTTGGAACCAGGGATGCCCTGCTTGGTaGTTAGGCGGTATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: IPGGGNSSCTRRRPGWNQGCPAW*LGGISS
Trigger: TGAAGAAATACCGCCTAATCACCAAGCAGGGCATCC...CTGGTTCCAACCAGGCCGCCTTCTAGTGCAACTGGAATTCCCACCTCCTGGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CTCCTTTGCTTTTACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACCACCACGAAGTCCAATaGCTCGGCCTCAGCCTCAGG +
Preference number: 4 (lower is better)
Translates to: LLCFYPQKFLRWILELSNHHEVQ*LGLSLR
Trigger: CCTGAGGCTGAGGCCGAGCCATTGGACTTCGTGGTG...GTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTAAAAGCAAAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp TTCGCTGGGAGGCTCCTAGCTACTTTGAATGACTTAGAAGTCACTTTGATCTTTAGCTGGCTCTGCACCTaGGCGCCGTCGCTACCGAAG +
Preference number: 4 (lower is better)
Translates to: FAGRLLATLNDLEVTLIFSWLCT*APSLPK
Trigger: CTTCGGTAGCGACGGCGCGCAGGTGCAGAGCCAGCT...AAAGATCAAAGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCTCCCAGCGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR GCA 90 bp ATACCAGGAGGTGGGAATTCCAGTTGCACTAGAAGGCGGCCTGGTTGGAACCAGACAGCGCTGTGCAGATaGAGCTGTTACTACTTGCAA +
Preference number: 4 (lower is better)
Translates to: IPGGGNSSCTRRRPGWNQTALCR*SCYYLQ
Trigger: TTGCAAGTAGTAACAGCTGCATCTGCACAGCGCTGT...CTGGTTCCAACCAGGCCGCCTTCTAGTGCAACTGGAATTCCCACCTCCTGGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CCTAGTAGCTGGGACAACAGGCACGCACCCCTACTCTCGGCTTTTTATTTATTTTCTCCTCACCCAGGCTaGAGCGCAGTGGTGCTATCA +
Preference number: 4 (lower is better)
Translates to: PSSWDNRHAPLLSAFYLFSPHPG*SAVVLS
Trigger: TGATAGCACCACTGCGCTCCAGCCTGGGTGAGGAGA...AAATAAATAAAAAGCCGAGAGTAGGGGTGCGTGCCTGTTGTCCCAGCTACTAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp GAAGGAAGGACTCTGAAGCCTGTGCGGGGACCAGTTCTTTGGAAAAACAGAGGGCAGAAAAATGGGCACTaGGGTGTTAAGCGTCGTAGA +
Preference number: 4 (lower is better)
Translates to: EGRTLKPVRGPVLWKNRGQKNGH*GVKRRR
Trigger: TCTACGACGCTTAACACCGCAGTGCCCATTTTTCTG...CCCTCTGTTTTTCCAAAGAACTGGTCCCCGCACAGGCTTCAGAGTCCTTCCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp TTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACAGCGCTCTCTGGATTGCACACTaGGCTGGTGATGGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: FCFLPLPLMWGTSIGDSALWIAH*AGDGKE
Trigger: TTCCTTCCCATCACCAGCCCAGTGTGCAATCCAGAG...AGCGCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CTACGCATTGCCCAACAAGAAGTTCAAGCTAACATCATCCCACAGAGTGAAGTTCCGGGTTTCAGAGCTTaGCTCTGCATCTCGGGCAGT +
Preference number: 4 (lower is better)
Translates to: LRIAQQEVQANIIPQSEVPGFRA*LCISGS
Trigger: ACTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGG...AACTTCACTCTGTGGGATGATGTTAGCTTGAACTTCTTGTTGGGCAATGCGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp GACTTAGAAGTCACTTTGATCTTTCCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGGCTCCAGGAAGAGCTaGCACATGACGTTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: DLEVTLIFPSLLFSPSAFGSRKS*HMTLRP
Trigger: TGGCCTCAACGTCATGTGCCAGCTCTTCCTGGAGCC...AAAGGCAGAGGGAGAAAACAGAAGGCTGGGAAAGATCAAAGTGACTTCTAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp CCTAGTAGCTGGGACAACAGGCACGCACCCCTACTCTCGGCTTTTTATTTATTTGCTCACCTGTCCCTCTaGTTCCTCTGCTTTAGGAGT +
Preference number: 4 (lower is better)
Translates to: PSSWDNRHAPLLSAFYLFAHLSL*FLCFRS
Trigger: ACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGC...AAATAAATAAAAAGCCGAGAGTAGGGGTGCGTGCCTGTTGTCCCAGCTACTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR GCA 90 bp AAAAGCATAAATGATCCAGAGAAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGGTGGGAATTCCAGTTaGACTAGAAGGCGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: KSINDPEKGSGVQKYQEVGGNSS*TRRRPG
Trigger: ACCAGGCCGCCTTCTAGTGCAACTGGAATTCCCACC...CACCTCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGATCATTTATGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp AAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGGAATTCCAGTTGCACTAGAACCTCTGCCTTTGATGTaGGGAACCAGTATTGGAGAC +
Preference number: 4 (lower is better)
Translates to: KGSGVQKYQEVGIPVALEPLPLM*GTSIGD
Trigger: GTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGG...TTCTAGTGCAACTGGAATTCCCACCTCCTGGTATTTCTGGACACCACTCCCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 72 bp ACCCGGGTTCTATTCGCTGGGAGGCTCCTAGCTACTTaGAATGACTTAGAAGTCACTTTGATCTTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: TRVLFAGRLLAT*NDLEVTLIFPS
Trigger: GCTGGGAAAGATCAAAGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCTCCCAGCGAATAGAACCCGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp AAAAGCATAAATGATCCAGAGAAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGTGGGGAACCAGTATTaGAGACAGCGCTGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: KSINDPEKGSGVQKYQEVVGNQY*RQRCAD
Trigger: ATCTGCACAGCGCTGTCTCCAATACTGGTTCCCCAC...CACCTCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGATCATTTATGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CCA 90 bp TTTACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACGCTCACCTGTCAGAAATTCCTCCGGTaGATCCTCGAACTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: FTPRNSSGGSSNFQTLTCQKFLR*ILELSN
Trigger: GTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTG...ACAGGTGAGCGTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
3UTR CAA 72 bp ATTTCATTTTACAGTATCACTCTCTCTCTCTCTGGATaGCACACTGGGCTGGTGATGGGAAGGAAAACAGGG +
Preference number: 4 (lower is better)
Translates to: ISFYSITLSLSG*HTGLVMGRKTG
Trigger: CCCTGTTTTCCTTCCCATCACCAGCCCAGTGTGCAATCCAGAGAGAGAGAGAGTGATACTGTAAAATGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 72 bp AGGCTCCTAGCTACTTTGAATGACTTAGAAGTCACTTaGATCTTTCCCAGCCTTCTGTTTTCTCCCTCTGCC +
Preference number: 4 (lower is better)
Translates to: RLLATLNDLEVT*IFPSLLFSPSA
Trigger: GGCAGAGGGAGAAAACAGAAGGCTGGGAAAGATCAAAGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
3UTR CAA 72 bp CAAACTCACTGTCAACATTCTCCTAGCACCTACGCATaGCCCAACAAGAAGTTCAAGCTAACATCATCCCAC +
Preference number: 4 (lower is better)
Translates to: QTHCQHSPSTYA*PNKKFKLTSSH
Trigger: GTGGGATGATGTTAGCTTGAACTTCTTGTTGGGCAATGCGTAGGTGCTAGGAGAATGTTGACAGTGAGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS CCA 90 bp GACTCGGCCGCGCTGTCGGAGCCCGACTCTAACGTCGGTCAGCGCTaGGGCAGCGCCGCAGCTCCGTTGGCGACGCGGGCCGGGGCGCCC +
Preference number: 5 (lower is better)
Translates to: DSAALSEPDSNVGQR*GSAAAPLATRAGAP
Trigger: GGGCGCCCCGGCCCGCGTCGCCAACGGAGCTGCGGCGCTGCCCCAGCGCTGACCGACGTTAGAGTCGGGCTCCGACAGCGCGGCCGAGTC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS GCA 90 bp TTGACCCCCGGGTGCTGTCTCTTGACCAGCTGCGAGCAGAAGCGCTaGAGCAGCCCGGCCACGCCCTTCCCGCGCTCCCAGGGCGCCACG +
Preference number: 5 (lower is better)
Translates to: LTPGCCLLTSCEQKR*SSPATPFPRSQGAT
Trigger: CGTGGCGCCCTGGGAGCGCGGGAAGGGCGTGGCCGGGCTGCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000300303.7
ENST00000444446.1
ENST00000455377.5
CDS CCA 90 bp GCCACAGCTGGCTTCCAGCTTCATGACCCTCGCCGGAGCCGGAGCTaGAGCCAGGGCCGAGATGCCGCAAAGCCAAGCGGGGCGGGCGGC +
Preference number: 5 (lower is better)
Translates to: ATAGFQLHDPRRSRS*SQGRDAAKPSGAGG
Trigger: GCCGCCCGCCCCGCTTGGCTTTGCGGCATCTCGGCCCTGGCTCCAGCTCCGGCTCCGGCGAGGGTCATGAAGCTGGAAGCCAGCTGTGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000443096.1
CDS TCA 90 bp CTGGATGATGGTCCCGCCTGGAAGCACGTCGCGCTGCACGGAGGGTaGCAGCAGGAGGCGTGCCACGTCGCCGCCTGCCTCGGACACGGC +
Preference number: 5 (lower is better)
Translates to: LDDGPAWKHVALHGG*QQEACHVAACLGHG
Trigger: GCCGTGTCCGAGGCAGGCGGCGACGTGGCACGCCTCCTGCTGTCACCCTCCGTGCAGCGCGACGTGCTTCCAGGCGGGACCATCATCCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 90 bp GTGAGCCGTGCCACCTTGACCCCCGGGTGCTGTCTCTTGACCAGCTaGGAGCAGAAGCGCTGCAGCAGCCCGGCCACGCCCTTCCCGCGC +
Preference number: 5 (lower is better)
Translates to: VSRATLTPGCCLLTS*EQKRCSSPATPFPR
Trigger: GCGCGGGAAGGGCGTGGCCGGGCTGCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 90 bp GGCTGCCAGTCCTGGATGATGGTCCCGCCTGGAAGCACGTCGCGCTaGACGGAGGGTGACAGCAGGAGGCGTGCCACGTCGCCGCCTGCC +
Preference number: 5 (lower is better)
Translates to: GCQSWMMVPPGSTSR*TEGDSRRRATSPPA
Trigger: GGCAGGCGGCGACGTGGCACGCCTCCTGCTGTCACCCTCCGTGCAGCGCGACGTGCTTCCAGGCGGGACCATCATCCAGGACTGGCAGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 90 bp CCCAGCTGGTCGTCCCGGGTGAGCCGTGCCACCTTGACCCCCGGGTaGTGTCTCTTGACCAGCTGCGAGCAGAAGCGCTGCAGCAGCCCG +
Preference number: 5 (lower is better)
Translates to: PSWSSRVSRATLTPG*CLLTSCEQKRCSSP
Trigger: CGGGCTGCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 90 bp CACATGACGTTGAGGCCAACGAGGCGCGGGGCCTGGCGCTGCAGGTaGCACAGCAGCTGGCTCTGCACCTGCGCGCCGTCGCTACCGAAG +
Preference number: 5 (lower is better)
Translates to: HMTLRPTRRGAWRCR*HSSWLCTCAPSLPK
Trigger: CTTCGGTAGCGACGGCGCGCAGGTGCAGAGCCAGCTGCTGTGGCACCTGCAGCGCCAGGCCCCGCGCCTCGTTGGCCTCAACGTCATGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 90 bp AGCTGGCACATGACGTTGAGGCCAACGAGGCGCGGGGCCTGGCGCTaGAGGTGCCACAGCAGCTGGCTCTGCACCTGCGCGCCGTCGCTA +
Preference number: 5 (lower is better)
Translates to: SWHMTLRPTRRGAWR*RCHSSWLCTCAPSL
Trigger: TAGCGACGGCGCGCAGGTGCAGAGCCAGCTGCTGTGGCACCTGCAGCGCCAGGCCCCGCGCCTCGTTGGCCTCAACGTCATGTGCCAGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp GCCGACGCGCCCGGCCCCTTCCACCTCTTGAGATGCTCCAGCTCCGAGTGTGTCACGCCTCCGTTGCGCTaGGCCAGCACCACCGTGCGG +
Preference number: 5 (lower is better)
Translates to: ADAPGPFHLLRCSSSECVTPPLR*ASTTVR
Trigger: CCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGT...GACACACTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCCGGGCGCGTCGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CAA 90 bp CAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGCGCCACTCCAGGCCCTaGGCCGCCAGCAGGCGCAGG +
Preference number: 5 (lower is better)
Translates to: QRRKWQERGWLGKLRKGARHSRP*AASRRR
Trigger: CCTGCGCCTGCTGGCGGCCAAGGGCCTGGAGTGGCG...CGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS TCA 90 bp GCTGGCTCTGCACCTGCGCGCCGTCGCTACCGAAGGCGTCGATGTTaGGATAGCGCCAAGTGCCGTCCCCTCCGTGCGGGATGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: AGSAPARRRYRRRRC*DSAKCRPLRAGWGR
Trigger: CCTTCCCCATCCCGCACGGAGGGGACGGCACTTGGCGCTATCTCAACATCGACGCCTTCGGTAGCGACGGCGCGCAGGTGCAGAGCCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 90 bp TTTCTTCAGCTCCCGGGGGCCCAGCTGGTCGTCCCGGGTGAGCCGTaGCACCTTGACCCCCGGGTGCTGTCTCTTGACCAGCTGCGAGCA +
Preference number: 5 (lower is better)
Translates to: FLQLPGAQLVVPGEP*HLDPRVLSLDQLRA
Trigger: TGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGAGCTGAAGAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 90 bp CGAAGTCCAATGGCTCGGCCTCAGCCTCAGGCCCCGATCCCGACCTaGGCTCGGCCTCCACCTCCTGTGGCCGGGTTTCAGAGCTTGGCT +
Preference number: 5 (lower is better)
Translates to: RSPMARPQPQAPIPT*ARPPPPVAGFQSLA
Trigger: AGCCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCCGAGCCCAGGTCGGGATCGGGGCCTGAGGCTGAGGCCGAGCCATTGGACTTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS CCA 90 bp CAGCACTTCCTCAAACTCCCGTTCCGTGGCCACCACGAAGTCCAATaGCTCGGCCTCAGCCTCAGGCCCCGATCCCGACCTGGGCTCGGC +
Preference number: 5 (lower is better)
Translates to: QHFLKLPFRGHHEVQ*LGLSLRPRSRPGLG
Trigger: GCCGAGCCCAGGTCGGGATCGGGGCCTGAGGCTGAGGCCGAGCCATTGGACTTCGTGGTGGCCACGGAACGGGAGTTTGAGGAAGTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS-3UTR CAA 90 bp CAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCACGCCTCCGTTGCGCTaGGCCAGCACCACCGTGCGG +
Preference number: 5 (lower is better)
Translates to: QRGLPRRRSVGNGRKEAGTPPLR*ASTTVR
Trigger: CCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGT...GCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp TTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTCGCCACTCCAGGCCCTaGGCCGCCAGCAGGCGCAGG +
Preference number: 5 (lower is better)
Translates to: FPGDAASEMAGKRLAGETRHSRP*AASRRR
Trigger: CCTGCGCCTGCTGGCGGCCAAGGGCCTGGAGTGGCG...AGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 90 bp AGCCTCAGGCCCCGATCCCGACCTGGGCTCGGCCTCCACCTCCTGTaGCCGGGTTTCAGAGCTTGGCTCTGCATCTCGGGCAGTCTTCTT +
Preference number: 5 (lower is better)
Translates to: SLRPRSRPGLGLHLL*PGFRAWLCISGSLL
Trigger: AAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCCGAGCCCAGGTCGGGATCGGGGCCTGAGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS CCA 90 bp TGCTTGGTGATTAGGCGGTATTTCTTCAGCTCCCGGGGGCCCAGCTaGTCGTCCCGGGTGAGCCGTGCCACCTTGACCCCCGGGTGCTGT +
Preference number: 5 (lower is better)
Translates to: CLVIRRYFFSSRGPS*SSRVSRATLTPGCC
Trigger: ACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGAGCTGAAGAAATACCGCCTAATCACCAAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp TTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTACGCCTCCGTTGCGCTaGGCCAGCACCACCGTGCGG +
Preference number: 5 (lower is better)
Translates to: FPGDAASEMAGKRLAGETTPPLR*ASTTVR
Trigger: CCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGT...AGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp AGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGCGATCACGCCTCCGTaGCGCTTGGCCAGCACCACC +
Preference number: 5 (lower is better)
Translates to: RRSVGNGRKEAGWGNCGRAITPP*RLASTT
Trigger: GGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCGC...CCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp CCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAGGCCGATGGCTTCTaGACACTCGCCGGAGCCGGA +
Preference number: 5 (lower is better)
Translates to: PGDAASEMAGKRLAGETAEADGF*TLAGAG
Trigger: TCCGGCTCCGGCGAGTGTCAAGAAGCCATCGGCCTC...CGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455377.5
CDS CCA 90 bp CGACCTGGGCTCGGCCTCCACCTCCTGTGGCCGGGTTTCAGAGCTTaGCTCTGCATCTCGGGCAGTCTTCTTTTCCGGCTTAGGGACCTC +
Preference number: 5 (lower is better)
Translates to: RPGLGLHLLWPGFRA*LCISGSLLFRLRDL
Trigger: GAGGTCCCTAAGCCGGAAAAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCCGAGCCCAGGTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS-3UTR CAA 90 bp CAGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGCGATCACGCCTCCGTaGCGCTTGGCCAGCACCACC +
Preference number: 5 (lower is better)
Translates to: QESEGTSQETQRRKWQERAITPP*RLASTT
Trigger: GGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCGC...TCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp CAGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGTGAGCCGTGCCACCTaGACCCCCGGGTGCTGTCTC +
Preference number: 5 (lower is better)
Translates to: QESEGTSQETQRRKWQERVSRAT*TPGCCL
Trigger: GAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCAC...TCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp AGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGCCCGGGTGCTGTCTCTaGACCAGCTGCGAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: RRSVGNGRKEAGWGNCGRPGCCL*TSCEQK
Trigger: CTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGG...CCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp TTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTAGCTGGCACATGACGTaGAGGCCAACGAGGCGCGGG +
Preference number: 5 (lower is better)
Translates to: FPGDAASEMAGKRLAGETSWHMT*RPTRRG
Trigger: CCCGCGCCTCGTTGGCCTCAACGTCATGTGCCAGCT...AGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp CAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCAGCAGCGCGGACGCGTaGAATCGGACCAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: QRGLPRRRSVGNGRKEAGSSADA*NRTKRM
Trigger: CATCCTTTTGGTCCGATTCAACGCGTCCGCGCTGCT...GCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp GGGACCCGCCCTCCACTGTACCAAACTCTTCAGCTAGAACCACACCACACACACAGCTGGCACATGACGTaGAGGCCAACGAGGCGCGGG +
Preference number: 5 (lower is better)
Translates to: GTRPPLYQTLQLEPHHTHSWHMT*RPTRRG
Trigger: CCCGCGCCTCGTTGGCCTCAACGTCATGTGCCAGCT...GTGTGTGTGGTGTGGTTCTAGCTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGGAAAAGAAACGCGGATaGGGCGGCTGCGCTCGGGAA +
Preference number: 5 (lower is better)
Translates to: GVRGDFPGDAASEMAGKREKKRG*GGCARE
Trigger: TTCCCGAGCGCAGCCGCCCAATCCGCGTTTCTTTTC...CCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp ACTTTGGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAGAGGAAGGCTGGGGATCCTCCCCCGGGAGTTaGCCACGCCCCACTTCCTCT +
Preference number: 5 (lower is better)
Translates to: TLVPKQALFPQPPEEGWGSSPGS*PRPTSS
Trigger: AGAGGAAGTGGGGCGTGGCAAACTCCCGGGGGAGGA...TCCCCAGCCTTCCTCTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CAA 90 bp CTGCACGCCCTGCACTTTGGTCCCAAAGCAGGCTCTATTTCCGCAGCCTCCAGAGGCCCCTTCCACCTCTaGAGATGCTCCAGCTCCGAG +
Preference number: 5 (lower is better)
Translates to: LHALHFGPKAGSISAASRGPFHL*RCSSSE
Trigger: CTCGGAGCTGGAGCATCTCAAGAGGTGGAAGGGGCC...TCTGGAGGCTGCGGAAATAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS TCA 90 bp TGGCTCTGCATCTCGGGCAGTCTTCTTTTCCGGCTTAGGGACCTCTaGGGTGGCTGTGCCACAGCTGGCTTCCAGCTTCATGACCCTCGC +
Preference number: 5 (lower is better)
Translates to: WLCISGSLLFRLRDL*GGCATAGFQLHDPR
Trigger: GCGAGGGTCATGAAGCTGGAAGCCAGCTGTGGCACAGCCACCTCAGAGGTCCCTAAGCCGGAAAAGAAGACTGCCCGAGATGCAGAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000443096.1
CDS-3UTR CAA 90 bp CCCCCACCTAATAGTCCGCAAGTTCAGGTCAGGGAGTGGGCAATGGTGTTTGGGGCCGGGTTTCAGAGCTaGGCTCTGCATCTCGGGCAG +
Preference number: 5 (lower is better)
Translates to: PPPNSPQVQVREWAMVFGAGFQS*ALHLGQ
Trigger: CTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGC...CCCAAACACCATTGCCCACTCCCTGACCTGAACTTGCGGACTATTAGGTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GGGACCCGCCCTCCACTGTACCAAACTCTTCAGCTAGAACCACACCACACACACCCCGGGTGCTGTCTCTaGACCAGCTGCGAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: GTRPPLYQTLQLEPHHTHPGCCL*TSCEQK
Trigger: CTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGG...GTGTGTGTGGTGTGGTTCTAGCTGAAGAGTTTGGTACAGTGGAGGGCGGGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS TCA 90 bp CTTCATGACCCTGAAATATCGATGCCCTTGAGGCCGATGGCTTCTTaGCACTGGGGGAGGGAGGAGAGGGAGGGAAGGGAGAGCCCAGTC +
Preference number: 5 (lower is better)
Translates to: LHDPEISMPLRPMAS*HWGREEREGRESPV
Trigger: GACTGGGCTCTCCCTTCCCTCCCTCTCCTCCCTCCCCCAGTGTCAAGAAGCCATCGGCCTCAAGGGCATCGATATTTCAGGGTCATGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444446.1
CDS-3UTR CAA 90 bp AGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGAGTGGGCAATGGTGTTaGGGGGAGCTAGAGGCAAGA +
Preference number: 5 (lower is better)
Translates to: RRSVGNGRKEAGWGNCGRSGQWC*GELEAR
Trigger: TCTTGCCTCTAGCTCCCCCAAACACCATTGCCCACT...CCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGCTCTCTCTCTCTGGATaGCACACTGGGCTGGTGATG +
Preference number: 5 (lower is better)
Translates to: VRGDFPGDAASEMAGKRLLSLSG*HTGLVM
Trigger: CATCACCAGCCCAGTGTGCAATCCAGAGAGAGAGAG...CAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GGGCGGCTGCGCTCGGGAACGAGGCTGGGCATCCCACACACTCCTGAGTTCTTCTTTCTCCCTCTGCCTTaGATGTGGGGAACCAGTATT +
Preference number: 5 (lower is better)
Translates to: GRLRSGTRLGIPHTPEFFFLPLP*MWGTSI
Trigger: AATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAA...GAAGAACTCAGGAGTGTGTGGGATGCCCAGCCTCGTTCCCGAGCGCAGCCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS TCA 90 bp TGGCTCTGCATCTCGGGCAGTCTTCTTTTCCGGCTTAGGGACCTCTaGGGTGGCTGTGCCACAGCTGGCTTCCAGCTTCATGACCCTGAA +
Preference number: 5 (lower is better)
Translates to: WLCISGSLLFRLRDL*GGCATAGFQLHDPE
Trigger: TTCAGGGTCATGAAGCTGGAAGCCAGCTGTGGCACAGCCACCTCAGAGGTCCCTAAGCCGGAAAAGAAGACTGCCCGAGATGCAGAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000444446.1
ENST00000455377.5
CDS-3UTR CAA 90 bp GGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGCGGGTCTTTAAGAGAGAGGTCCCTTaGGAGCCCCCAAGAGTCAAA +
Preference number: 5 (lower is better)
Translates to: GNGRKEAGWGNCGRGRVFKREVP*EPPRVK
Trigger: TTTGACTCTTGGGGGCTCCAAAGGGACCTCTCTCTT...AAAGACCCGCCCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp TACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACGCTCACCTGTCCGCCGGGTTTCAGAGCTaGGCTCTGCATCTCGGGCAG +
Preference number: 5 (lower is better)
Translates to: YPQKFLRWILELSNAHLSAGFQS*ALHLGQ
Trigger: CTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGC...GGACAGGTGAGCGTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CAA 90 bp GACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAACCTAGCACCTACGCATaGCCCAACAAGAAGTTCAAG +
Preference number: 5 (lower is better)
Translates to: DFPGDAASEMAGKRLAGEPSTYA*PNKKFK
Trigger: CTTGAACTTCTTGTTGGGCAATGCGTAGGTGCTAGG...TTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGAAAAGGATGCCCTGCTaGGTGATTAGGCGGTATTTC +
Preference number: 5 (lower is better)
Translates to: VRGDFPGDAASEMAGKRLKRMPC*VIRRYF
Trigger: GAAATACCGCCTAATCACCAAGCAGGGCATCCTTTT...CAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp GACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAAAAAGGATGCCCTGCTaGGTGATTAGGCGGTATTTC +
Preference number: 5 (lower is better)
Translates to: DFPGDAASEMAGKRLAGEKRMPC*VIRRYF
Trigger: GAAATACCGCCTAATCACCAAGCAGGGCATCCTTTT...TTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS-3UTR CAA 90 bp TGCCCACATCTCGGATCCCATCCCAGCGAACCCCAAACTCACTGTCAACATTCTAGCAGCGCGGACGCGTaGAATCGGACCAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: CPHLGSHPSEPQTHCQHSSSADA*NRTKRM
Trigger: CATCCTTTTGGTCCGATTCAACGCGTCCGCGCTGCT...AGAATGTTGACAGTGAGTTTGGGGTTCGCTGGGATGGGATCCGAGATGTGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp ACGCAGCGTCGGAAATGGCAGGAAAGAGGCTGGCTGGGGAAACTGCGGAAGGGGGACTTAGAAGTCACTTaGATCTTTCCCAGCCTTCTG +
Preference number: 5 (lower is better)
Translates to: TQRRKWQERGWLGKLRKGDLEVT*IFPSLL
Trigger: CAGAAGGCTGGGAAAGATCAAAGTGACTTCTAAGTC...CCCCTTCCGCAGTTTCCCCAGCCAGCCTCTTTCCTGCCATTTCCGACGCTGCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp CTTTCAAACGCTCACCTGTCCCTCTGGTTCCTCTGCTTTAGGAGTCCTCCACCCAAGAGAGAGGTCCCTTaGGAGCCCCCAAGAGTCAAA +
Preference number: 5 (lower is better)
Translates to: LSNAHLSLWFLCFRSPPPKREVP*EPPRVK
Trigger: TTTGACTCTTGGGGGCTCCAAAGGGACCTCTCTCTT...GGGTGGAGGACTCCTAAAGCAGAGGAACCAGAGGGACAGGTGAGCGTTTGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CAA 90 bp AAAAGCATAAATGATCCAGAGAAAGGGAGTGGTGTCCAGAAATACCAGGAGGTGGTGAGCCGTGCCACCTaGACCCCCGGGTGCTGTCTC +
Preference number: 5 (lower is better)
Translates to: KSINDPEKGSGVQKYQEVVSRAT*TPGCCL
Trigger: GAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCAC...CACCTCCTGGTATTTCTGGACACCACTCCCTTTCTCTGGATCATTTATGCTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GAAGGAAGGACTCTGAAGCCTGTGCGGGGACCAGTTCTTTGGAAAAACAGAGGGTGTGGGGAACCAGTATaGGAGACAGCGCTGTGCAGA +
Preference number: 5 (lower is better)
Translates to: EGRTLKPVRGPVLWKNRGCGEPV*ETALCR
Trigger: TCTGCACAGCGCTGTCTCCAATACTGGTTCCCCACA...CCCTCTGTTTTTCCAAAGAACTGGTCCCCGCACAGGCTTCAGAGTCCTTCCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp AGGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGAGGCTCCTAGCTACTTaGAATGACTTAGAAGTCACT +
Preference number: 5 (lower is better)
Translates to: RSQRGLPRRRSVGNGRKERLLAT*NDLEVT
Trigger: AGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCT...CTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp CTCCTTTGCTTTTACCCCCAGAAATTCCTCCGGTGGATCCTCGAACTTTCAAACTGCACGCCCTGCACTTaGGTCCCAAAGCAGGCTCTA +
Preference number: 5 (lower is better)
Translates to: LLCFYPQKFLRWILELSNCTPCT*VPKQAL
Trigger: TAGAGCCTGCTTTGGGACCAAAGTGCAGGGCGTGCA...GTTTGAAAGTTCGAGGATCCACCGGAGGAATTTCTGGGGGTAAAAGCAAAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS-3UTR CAA 90 bp TTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACAGCGCTAAGAGAGAGGTCCCTTaGGAGCCCCCAAGAGTCAAA +
Preference number: 5 (lower is better)
Translates to: FCFLPLPLMWGTSIGDSAKREVP*EPPRVK
Trigger: TTTGACTCTTGGGGGCTCCAAAGGGACCTCTCTCTT...AGCGCTGTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp GGAGTCAGAGGGGACTTCCCAGGAGACGCAGCGTCGGAAATGGCAGGAAAGAGGAAAAGGTCCATTTTATaGTCATACAATCGTGGTCAC +
Preference number: 5 (lower is better)
Translates to: GVRGDFPGDAASEMAGKRKRSIL*SYNRGH
Trigger: GTGACCACGATTGTATGACAATAAAATGGACCTTTT...CCTCTTTCCTGCCATTTCCGACGCTGCGTCTCCTGGGAAGTCCCCTCTGACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp CCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGACTGCGAAATAGCAAAGTaGTGCAAAGCAGGAGGAAAC +
Preference number: 5 (lower is better)
Translates to: PAFCFLPLPLMWGTSIGDCEIAK*CKAGGN
Trigger: GTTTCCTCCTGCTTTGCACAACTTTGCTATTTCGCA...GTCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp TTCGCTGGGAGGCTCCTAGCTACTTTGAATGACTTAGAAGTCACTTTGATCTTTGCGGGGACCAGTTCTTaGGAAAAACAGAGGGTGGAT +
Preference number: 5 (lower is better)
Translates to: FAGRLLATLNDLEVTLIFAGTSS*EKQRVD
Trigger: ATCCACCCTCTGTTTTTCCAAAGAACTGGTCCCCGC...AAAGATCAAAGTGACTTCTAAGTCATTCAAAGTAGCTAGGAGCCTCCCAGCGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS-3UTR CAA 90 bp CCCAGCCTTCTGTTTTCTCCCTCTGCCTTTGATGTGGGGAACCAGTATTGGAGATGCAGCTGTTACTACTaGCAATTAAATAGAAGACTC +
Preference number: 5 (lower is better)
Translates to: PSLLFSPSAFDVGNQYWRCSCYY*QLNRRL
Trigger: GAGTCTTCTATTTAATTGCAAGTAGTAACAGCTGCA...TCTCCAATACTGGTTCCCCACATCAAAGGCAGAGGGAGAAAACAGAAGGCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS TCA 72 bp CTCCGTGCGGGATGGGGAAGGGGCGCGTGCACAGCGTaGGCACGCGCGGGCGCGCGCGGCTGTCCACGCGCC +
Preference number: 6 (lower is better)
Translates to: LRAGWGRGACTA*ARAGARGCPRA
Trigger: GGCGCGTGGACAGCCGCGCGCGCCCGCGCGTGCTCACGCTGTGCACGCGCCCCTTCCCCATCCCGCACGGAG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 72 bp ACGTCGGTCAGCGCTGGGGCAGCGCCGCAGCTCCGTTaGCGACGCGGGCCGGGGCGCCCATCGGTTCAGGGG +
Preference number: 6 (lower is better)
Translates to: TSVSAGAAPQLR*RRGPGRPSVQG
Trigger: CCCCTGAACCGATGGGCGCCCCGGCCCGCGTCGCCAACGGAGCTGCGGCGCTGCCCCAGCGCTGACCGACGT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS CAA 72 bp AACGTCGGTCAGCGCTGGGGCAGCGCCGCAGCTCCGTaGGCGACGCGGGCCGGGGCGCCCATCGGTTCAGGG +
Preference number: 6 (lower is better)
Translates to: NVGQRWGSAAAP*ATRAGAPIGSG
Trigger: CCCTGAACCGATGGGCGCCCCGGCCCGCGTCGCCAACGGAGCTGCGGCGCTGCCCCAGCGCTGACCGACGTT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS CCA 72 bp GCGCTGTCGGAGCCCGACTCTAACGTCGGTCAGCGCTaGGGCAGCGCCGCAGCTCCGTTGGCGACGCGGGCC +
Preference number: 6 (lower is better)
Translates to: ALSEPDSNVGQR*GSAAAPLATRA
Trigger: GGCCCGCGTCGCCAACGGAGCTGCGGCGCTGCCCCAGCGCTGACCGACGTTAGAGTCGGGCTCCGACAGCGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000300303.7
CDS CCA 72 bp GTGCCACGTCGCCGCCTGCCTCGGACACGGCCTCGGTaGGCAGCGGCGAGAAGGTGCCAGAGGTCCGCAGCG +
Preference number: 6 (lower is better)
Translates to: VPRRRLPRTRPR*AAARRCQRSAA
Trigger: CGCTGCGGACCTCTGGCACCTTCTCGCCGCTGCCCACCGAGGCCGTGTCCGAGGCAGGCGGCGACGTGGCAC
75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CAA 72 bp GGGCGCGCGCGGCTGTCCACGCGCCACTCCAGGCCCTaGGCCGCCAGCAGGCGCAGGTTGCTTTCGCTAGGC +
Preference number: 6 (lower is better)
Translates to: GRARLSTRHSRP*AASRRRLLSLG
Trigger: GCCTAGCGAAAGCAACCTGCGCCTGCTGGCGGCCAAGGGCCTGGAGTGGCGCGTGGACAGCCGCGCGCGCCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS TCA 72 bp GGTCCCGCCTGGAAGCACGTCGCGCTGCACGGAGGGTaGCAGCAGGAGGCGTGCCACGTCGCCGCCTGCCTC +
Preference number: 6 (lower is better)
Translates to: GPAWKHVALHGG*QQEACHVAACL
Trigger: GAGGCAGGCGGCGACGTGGCACGCCTCCTGCTGTCACCCTCCGTGCAGCGCGACGTGCTTCCAGGCGGGACC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 72 bp CGATCACGCCTCCGTTGCGCTTGGCCAGCACCACCGTaGGGTCGGGGTCCCGGAGCCAGCTGTGGTAGCGGC +
Preference number: 6 (lower is better)
Translates to: RSRLRCAWPAPP*GRGPGASCGSG
Trigger: GCCGCTACCACAGCTGGCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300303.7
ENST00000444446.1
ENST00000455377.5
CDS GCA 72 bp CTCCCGGGGGCCCAGCTGGTCGTCCCGGGTGAGCCGTaGCACCTTGACCCCCGGGTGCTGTCTCTTGACCAG +
Preference number: 6 (lower is better)
Translates to: LPGAQLVVPGEP*HLDPRVLSLDQ
Trigger: CTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 72 bp TCACCACGCCTCCGTTGCGCTTGGCCAGCACCACCGTaGGGTCGGGGTCCCGGAGCCAGCTGTGGTAGCGGC +
Preference number: 6 (lower is better)
Translates to: SPRLRCAWPAPP*GRGPGASCGSG
Trigger: GCCGCTACCACAGCTGGCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGGTGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443096.1
CDS CCA 72 bp TCACCGACTCCAGCGCGATCACGCCTCCGTTGCGCTTaGCCAGCACCACCGTGCGGTCGGGGTCCCGGAGCC +
Preference number: 6 (lower is better)
Translates to: SPTPARSRLRCA*PAPPCGRGPGA
Trigger: GGCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCGCGCTGGAGTCGGTGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300303.7
ENST00000444446.1
ENST00000455377.5
CDS CAA 90 bp TCGTCCCGGGTGAGCCGTGCCACCTTGACCCCCGGGTGCTGTCTCTaGACCAGCTGCGAGCAGAAGCGCTGCAGCAGCCCGGCCACGCCC +
Preference number: 6 (lower is better)
Translates to: SSRVSRATLTPGCCL*TSCEQKRCSSPATP
Trigger: GGGCGTGGCCGGGCTGCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CAA 90 bp AGCTCCCGGGGGCCCAGCTGGTCGTCCCGGGTGAGCCGTGCCACCTaGACCCCCGGGTGCTGTCTCTTGACCAGCTGCGAGCAGAAGCGC +
Preference number: 6 (lower is better)
Translates to: SSRGPSWSSRVSRAT*TPGCCLLTSCEQKR
Trigger: GCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGAGCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 72 bp GCCACCTTGACCCCCGGGTGCTGTCTCTTGACCAGCTaGGAGCAGAAGCGCTGCAGCAGCCCGGCCACGCCC +
Preference number: 6 (lower is better)
Translates to: ATLTPGCCLLTS*EQKRCSSPATP
Trigger: GGGCGTGGCCGGGCTGCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 72 bp ATGGCTCGGCCTCAGCCTCAGGCCCCGATCCCGACCTaGGCTCGGCCTCCACCTCCTGTGGCCGGGTTTCAG +
Preference number: 6 (lower is better)
Translates to: MARPQPQAPIPT*ARPPPPVAGFQ
Trigger: CTGAAACCCGGCCACAGGAGGTGGAGGCCGAGCCCAGGTCGGGATCGGGGCCTGAGGCTGAGGCCGAGCCAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS CAA 72 bp TTCACCGACTCCAGCGCGATCACGCCTCCGTTGCGCTaGGCCAGCACCACCGTGCGGTCGGGGTCCCGGAGC +
Preference number: 6 (lower is better)
Translates to: FTDSSAITPPLR*ASTTVRSGSRS
Trigger: GCTCCGGGACCCCGACCGCACGGTGGTGCTGGCCAAGCGCAACGGAGGCGTGATCGCGCTGGAGTCGGTGAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000300303.7
ENST00000444446.1
ENST00000455377.5
CDS CAA 72 bp GGGCCCAGCTGGTCGTCCCGGGTGAGCCGTGCCACCTaGACCCCCGGGTGCTGTCTCTTGACCAGCTGCGAG +
Preference number: 6 (lower is better)
Translates to: GPSWSSRVSRAT*TPGCCLLTSCE
Trigger: CTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGGCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 72 bp GGCTTCCAGCTTCATGACCCTCGCCGGAGCCGGAGCTaGAGCCAGGGCCGAGATGCCGCAAAGCCAAGCGGG +
Preference number: 6 (lower is better)
Translates to: GFQLHDPRRSRS*SQGRDAAKPSG
Trigger: CCCGCTTGGCTTTGCGGCATCTCGGCCCTGGCTCCAGCTCCGGCTCCGGCGAGGGTCATGAAGCTGGAAGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000443096.1
CDS CCA 72 bp GGCCGATGGCTTCTTGACACTCGCCGGAGCCGGAGCTaGAGCCAGGGCCGAGATGCCGCAAAGCCAAGCGGG +
Preference number: 6 (lower is better)
Translates to: GRWLLDTRRSRS*SQGRDAAKPSG
Trigger: CCCGCTTGGCTTTGCGGCATCTCGGCCCTGGCTCCAGCTCCGGCTCCGGCGAGTGTCAAGAAGCCATCGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455377.5
CDS TCA 72 bp GCACCTGCGCGCCGTCGCTACCGAAGGCGTCGATGTTaGGATAGCGCCAAGTGCCGTCCCCTCCGTGCGGGA +
Preference number: 6 (lower is better)
Translates to: APARRRYRRRRC*DSAKCRPLRAG
Trigger: TCCCGCACGGAGGGGACGGCACTTGGCGCTATCTCAACATCGACGCCTTCGGTAGCGACGGCGCGCAGGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 72 bp TCGTCCCGGGTGAGCCGTGCCACCTTGACCCCCGGGTaGTGTCTCTTGACCAGCTGCGAGCAGAAGCGCTGC +
Preference number: 6 (lower is better)
Translates to: SSRVSRATLTPG*CLLTSCEQKRC
Trigger: GCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCACCCGGGACGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS GCA 72 bp TCCTGGATGATGGTCCCGCCTGGAAGCACGTCGCGCTaGACGGAGGGTGACAGCAGGAGGCGTGCCACGTCG +
Preference number: 6 (lower is better)
Translates to: SWMMVPPGSTSR*TEGDSRRRATS
Trigger: CGACGTGGCACGCCTCCTGCTGTCACCCTCCGTGCAGCGCGACGTGCTTCCAGGCGGGACCATCATCCAGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CAA 72 bp GTGAGCCGTGCCACCTTGACCCCCGGGTGCTGTCTCTaGACCAGCTGCGAGCAGAAGCGCTGCAGCAGCCCG +
Preference number: 6 (lower is better)
Translates to: VSRATLTPGCCL*TSCEQKRCSSP
Trigger: CGGGCTGCTGCAGCGCTTCTGCTCGCAGCTGGTCAAGAGACAGCACCCGGGGGTCAAGGTGGCACGGCTCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 72 bp ATTAGGCGGTATTTCTTCAGCTCCCGGGGGCCCAGCTaGTCGTCCCGGGTGAGCCGTGCCACCTTGACCCCC +
Preference number: 6 (lower is better)
Translates to: IRRYFFSSRGPS*SSRVSRATLTP
Trigger: GGGGGTCAAGGTGGCACGGCTCACCCGGGACGACCAGCTGGGCCCCCGGGAGCTGAAGAAATACCGCCTAAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300303.7
ENST00000455377.5
CDS CCA 72 bp CTCAAACTCCCGTTCCGTGGCCACCACGAAGTCCAATaGCTCGGCCTCAGCCTCAGGCCCCGATCCCGACCT +
Preference number: 6 (lower is better)
Translates to: LKLPFRGHHEVQ*LGLSLRPRSRP
Trigger: AGGTCGGGATCGGGGCCTGAGGCTGAGGCCGAGCCATTGGACTTCGTGGTGGCCACGGAACGGGAGTTTGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS CCA 72 bp CCGAGATGGCCAGCACTTCCTCAAACTCCCGTTCCGTaGCCACCACGAAGTCCAATGGCTCGGCCTCAGCCT +
Preference number: 6 (lower is better)
Translates to: PRWPALPQTPVP*PPRSPMARPQP
Trigger: AGGCTGAGGCCGAGCCATTGGACTTCGTGGTGGCCACGGAACGGGAGTTTGAGGAAGTGCTGGCCATCTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS CAA 72 bp GCTCGGCCTCCACCTCCTGTGGCCGGGTTTCAGAGCTaGGCTCTGCATCTCGGGCAGTCTTCTTTTCCGGCT +
Preference number: 6 (lower is better)
Translates to: ARPPPPVAGFQS*ALHLGQSSFPA
Trigger: AGCCGGAAAAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS CCA 72 bp CTCGGCCTCCACCTCCTGTGGCCGGGTTTCAGAGCTTaGCTCTGCATCTCGGGCAGTCTTCTTTTCCGGCTT +
Preference number: 6 (lower is better)
Translates to: LGLHLLWPGFRA*LCISGSLLFRL
Trigger: AAGCCGGAAAAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGCCACAGGAGGTGGAGGCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS TCA 72 bp CCTGAAATATCGATGCCCTTGAGGCCGATGGCTTCTTaGCACTGGGGGAGGGAGGAGAGGGAGGGAAGGGAG +
Preference number: 6 (lower is better)
Translates to: PEISMPLRPMAS*HWGREEREGRE
Trigger: CTCCCTTCCCTCCCTCTCCTCCCTCCCCCAGTGTCAAGAAGCCATCGGCCTCAAGGGCATCGATATTTCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444446.1
CDS GCA 72 bp CTCCACCTCCTGTGGCCGGGTTTCAGAGCTTGGCTCTaGATCTCGGGCAGTCTTCTTTTCCGGCTTAGGGAC +
Preference number: 6 (lower is better)
Translates to: LHLLWPGFRAWL*ISGSLLFRLRD
Trigger: GTCCCTAAGCCGGAAAAGAAGACTGCCCGAGATGCAGAGCCAAGCTCTGAAACCCGGCCACAGGAGGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS TCA 72 bp GCTTCCAGCTTCATGACCCTGAAATATCGATGCCCTTaGGGCCGATGGCTTCTTGACACTCGCCGGAGCCGG +
Preference number: 6 (lower is better)
Translates to: ASSFMTLKYRCP*GRWLLDTRRSR
Trigger: CCGGCTCCGGCGAGTGTCAAGAAGCCATCGGCCTCAAGGGCATCGATATTTCAGGGTCATGAAGCTGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455377.5
CDS TCA 72 bp ATCTCGGGCAGTCTTCTTTTCCGGCTTAGGGACCTCTaGGGTGGCTGTGCCACAGCTGGCTTCCAGCTTCAT +
Preference number: 6 (lower is better)
Translates to: ISGSLLFRLRDL*GGCATAGFQLH
Trigger: ATGAAGCTGGAAGCCAGCTGTGGCACAGCCACCTCAGAGGTCCCTAAGCCGGAAAAGAAGACTGCCCGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000300303.7
ENST00000443096.1
ENST00000444446.1
ENST00000455377.5
CDS TCA 72 bp GCTTCCAGCTTCATGACCCTGAAATATCGATGCCCTTaGGGCCGATGGCTTCTTGACACTGGGGGAGGGAGG +
Preference number: 6 (lower is better)
Translates to: ASSFMTLKYRCP*GRWLLDTGGGR
Trigger: CCTCCCTCCCCCAGTGTCAAGAAGCCATCGGCCTCAAGGGCATCGATATTTCAGGGTCATGAAGCTGGAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444446.1