Pregenerated sensors for NAPSA (Homo sapiens)
Ensembl gene IDs: ENSG00000131400Ensembl transcript IDs: ENST00000253719.7, ENST00000596653.1, ENST00000598044.1, ENST00000599181.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGCAGAGGCCCTGCCGCCTAGACTTACGCAGTCCCAAGCAAACCTaGATGATCGTCTCCCTCCACCCGGCCACCATCCGCAGAGTCGCA | + |
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Preference number: 5 (lower is better) Translates to: VQRPCRLDLRSPKQT*MIVSLHPATIRRVA Trigger: TGCGACTCTGCGGATGGTGGCCGGGTGGAGGGAGACGATCATGCAGGTTTGCTTGGGACTGCGTAAGTCTAGGCGGCAGGGCCTCTGCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS GCA 90 bp | CCTCCACCACCCTCCAGACTATCTGTCACGAAGTCCAGTGCCTGCTaGCCTGGAAAGCCCCTTAAATACTTGCCTCCCACCCTCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: PPPPSRLSVTKSSAC*PGKPLKYLPPTLRP Trigger: GGGCCTGAGGGTGGGAGGCAAGTATTTAAGGGGCTTTCCAGGGCAGCAGGCACTGGACTTCGTGACAGATAGTCTGGAGGGTGGTGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS CCA 90 bp | CTCCCTCCACCCGGCCACCATCCGCAGAGTCGCAGTGTAGACACGTaGAAAGTGTCCTCAATTCCTCCACCACCCTCCAGACTATCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LPPPGHHPQSRSVDT*KVSSIPPPPSRLSV Trigger: GACAGATAGTCTGGAGGGTGGTGGAGGAATTGAGGACACTTTCCACGTGTCTACACTGCGACTCTGCGGATGGTGGCCGGGTGGAGGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS GCA 90 bp | ATTCCTCCACCACCCTCCAGACTATCTGTCACGAAGTCCAGTGCCTaGTGCCCTGGAAAGCCCCTTAAATACTTGCCTCCCACCCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: IPPPPSRLSVTKSSA*CPGKPLKYLPPTLR Trigger: CCTGAGGGTGGGAGGCAAGTATTTAAGGGGCTTTCCAGGGCAGCAGGCACTGGACTTCGTGACAGATAGTCTGGAGGGTGGTGGAGGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS TCA 90 bp | CAGGTTGGACTCGATGAAGAGGGATGCTGTAGGGAAAGAGGATATTaGCAGGAAGCTGCCCTTCTTGGAGAACCTCTAAATAGACTTACC | + |
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Preference number: 5 (lower is better) Translates to: QVGLDEEGCCRERGY*QEAALLGEPLNRLT Trigger: GGTAAGTCTATTTAGAGGTTCTCCAAGAAGGGCAGCTTCCTGTCAATATCCTCTTTCCCTACAGCATCCCTCTTCATCGAGTCCAACCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS GCA 72 bp | CTGGGTAGCAGGACCTCCGCGACCACCCGCTGCGCATaGGCTTCACTTGGGCGTCACCCGGGGAACTGCGCC | + |
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Preference number: 6 (lower is better) Translates to: LGSRTSATTRCA*ASLGRHPGNCA Trigger: GGCGCAGTTCCCCGGGTGACGCCCAAGTGAAGCGCATGCGCAGCGGGTGGTCGCGGAGGTCCTGCTACCCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000253719.7 ENST00000598044.1 ENST00000599181.1 |
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| CDS GCA 72 bp | TTTTTACTGGGTAGCAGGACCTCCGCGACCACCCGCTaGGCATGCGCTTCACTTGGGCGTCACCCGGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: FLLGSRTSATTR*ACASLGRHPGN Trigger: GTTCCCCGGGTGACGCCCAAGTGAAGCGCATGCGCAGCGGGTGGTCGCGGAGGTCCTGCTACCCAGTAAAAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000253719.7 ENST00000598044.1 ENST00000599181.1 |
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| CDS GCA 72 bp | CCCTGCCGCCTAGACTTACGCAGTCCCAAGCAAACCTaGATGATCGTCTCCCTCCACCCGGCCACCATCCGC | + |
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Preference number: 6 (lower is better) Translates to: PCRLDLRSPKQT*MIVSLHPATIR Trigger: GCGGATGGTGGCCGGGTGGAGGGAGACGATCATGCAGGTTTGCTTGGGACTGCGTAAGTCTAGGCGGCAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS CCA 72 bp | CCCGGCCACCATCCGCAGAGTCGCAGTGTAGACACGTaGAAAGTGTCCTCAATTCCTCCACCACCCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PGHHPQSRSVDT*KVSSIPPPPSR Trigger: TCTGGAGGGTGGTGGAGGAATTGAGGACACTTTCCACGTGTCTACACTGCGACTCTGCGGATGGTGGCCGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS GCA 72 bp | CCCTCCAGACTATCTGTCACGAAGTCCAGTGCCTGCTaGCCTGGAAAGCCCCTTAAATACTTGCCTCCCACC | + |
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Preference number: 6 (lower is better) Translates to: PSRLSVTKSSAC*PGKPLKYLPPT Trigger: GGTGGGAGGCAAGTATTTAAGGGGCTTTCCAGGGCAGCAGGCACTGGACTTCGTGACAGATAGTCTGGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599181.1 |
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| CDS CCA 72 bp | GCCTGGAAGGAGCTAGAGGCTTTGGGATCAAATCGGTaGTGTAACCCTAGGTTAGAGGTCAGAAAGGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: AWKELEALGSNR*CNPRLEVRKVS Trigger: TGACACCTTTCTGACCTCTAACCTAGGGTTACACCACCGATTTGATCCCAAAGCCTCTAGCTCCTTCCAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000596653.1 ENST00000599181.1 |
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