RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAPG (Homo sapiens)

Ensembl gene IDs: ENSG00000134265

Ensembl transcript IDs: ENST00000322897.11, ENST00000580224.5, ENST00000580483.5, ENST00000582472.3, ENST00000582978.5, ENST00000583367.1

Found 173 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACAACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTaGGCAGGAAGGGTGAAGGAGGCTGCACCTGGACACAGCCTTTTG +
Preference number: 1 (lower is better)
Translates to: DNKQYPQVLVIQSSP*AGRVKEAAPGHSLL
Trigger: CAAAAGGCTGTGTCCAGGTGCAGCCTCCTTCACCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR GCA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATaGTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTAGTTTCTGCA +
Preference number: 1 (lower is better)
Translates to: KPWLLCLGCRFLDTS*WPSQLAERPLVVSA
Trigger: TGCAGAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR CCA 90 bp CCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTaGCCTTCTCAATTAGCTGAACGGCCTCTGGTAGTTTCTGCATCT +
Preference number: 1 (lower is better)
Translates to: PWLLCLGCRFLDTSC*PSQLAERPLVVSAS
Trigger: AGATGCAGAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR GCA 90 bp ACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAACACCAAGTTTTaGACTTTGGACTATGCTCTCAAGATAGAAACTTACGTGAGTGGA +
Preference number: 1 (lower is better)
Translates to: TVEFWKTIFLVNTKF*TLDYALKIETYVSG
Trigger: TCCACTCACGTAAGTTTCTATCTTGAGAGCATAGTCCAAAGTGCAAAACTTGGTGTTTACAAGGAAAATTGTCTTCCAGAACTCCACTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp ACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTTGGCAGCGTGTACCTaGAGAACGCACACTGCTGGT +
Preference number: 2 (lower is better)
Translates to: TRDHLPKEDVILSSPAELLAACT*RTHTAG
Trigger: ACCAGCAGTGTGCGTTCTGCAGGTACACGCTGCCAA...CAGTTCTGCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CCA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTGCCCTATTATTTTCATaGGCAACAGCTTCCCTCAGG +
Preference number: 2 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPALLFS*ATASLR
Trigger: CCTGAGGGAAGCTGTTGCCCATGAAAATAATAGGGC...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580224.5
3UTR-3UTR TCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGGAGACAGGGCATGGATaGGCAGGAATTACTTTGGCA +
Preference number: 2 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGETGHG*AGITLA
Trigger: TGCCAAAGTAATTCCTGCTCATCCATGCCCTGTCTC...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR TCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACTATTCCCAAGTCCTTaGAATGGCATGTCAGGATTT +
Preference number: 2 (lower is better)
Translates to: STVFTAIEPRDAIALPDTLFPSP*NGMSGF
Trigger: AAATCCTGACATGCCATTTCAAGGACTTGGGAATAG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR-3UTR CCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGGAGCAGGAATTACTTTaGCAGCGTGTACCTGCAGAA +
Preference number: 2 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGEQELL*QRVPAE
Trigger: TTCTGCAGGTACACGCTGCCAAAGTAATTCCTGCTC...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGTTTTCTGTTAATTCCTaGTGGTGTCTTAGAAAAGCT +
Preference number: 2 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGFSVNS*WCLRKA
Trigger: AGCTTTTCTAAGACACCAGCAGGAATTAACAGAAAA...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTACAGGCATCTTTTGCTTaGTCAAACTGTTTGGCATTT +
Preference number: 2 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVQASFA*SNCLAF
Trigger: AAATGCCAAACAGTTTGAGCAAGCAAAAGATGCCTG...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580224.5
3UTR-3UTR CCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATGACAGAGACAGGGCATaGATGAGCAGGAATTACTTT +
Preference number: 2 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDDRDRA*MSRNYF
Trigger: AAAGTAATTCCTGCTCATCCATGCCCTGTCTCTGTC...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR TCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATCTATTCCCAAGTCCTTaGAATGGCATGTCAGGATTT +
Preference number: 2 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDLFPSP*NGMSGF
Trigger: AAATCCTGACATGCCATTTCAAGGACTTGGGAATAG...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR TCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAACAGGTGATTTCTTCTTaGTTCCCCCTCCTGGAACCA +
Preference number: 2 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEQVISS*FPLLEP
Trigger: TGGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTG...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR-3UTR CCA 90 bp CACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAAACAGCCTGTGCAACATaGAGCAACTCCATCTCAACA +
Preference number: 2 (lower is better)
Translates to: HFGESDDSGVLEDNFPCKTACAT*SNSIST
Trigger: TGTTGAGATGGAGTTGCTCCATGTTGCACAGGCTGT...TTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTCATCACTTTCACCAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATAAGATATTCATAGGCTaGGTGAGGTGGCTTATGTCT +
Preference number: 2 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDKIFIG*VRWLMS
Trigger: AGACATAAGCCACCTCACCCAGCCTATGAATATCTT...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR CAA 90 bp GACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAACACCAAGTTTaGCACTTTGGACTATGCTCTCAAGATAGAAACTTACGTGAGTGG +
Preference number: 2 (lower is better)
Translates to: DSGVLEDNFPCKHQV*HFGLCSQDRNLREW
Trigger: CCACTCACGTAAGTTTCTATCTTGAGAGCATAGTCCAAAGTGCAAAACTTGGTGTTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAAATATCCCCAAGTCCTaGTTATTCAATCCTCACCGT +
Preference number: 2 (lower is better)
Translates to: HIHANFHFGESDDSGVLENIPKS*LFNPHR
Trigger: ACGGTGAGGATTGAATAACCAGGACTTGGGGATATT...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAATTTCTGAATAGAGAGTaGCGCCTCATCAAACCTACG +
Preference number: 2 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEFLNRE*RLIKPT
Trigger: CGTAGGTTTGATGAGGCGGCACTCTCTATTCAGAAA...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR-3UTR CCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATTCTGTTAATTCCTGCTaGTGTCTTAGAAAAGCTCTT +
Preference number: 2 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDSVNSC*CLRKAL
Trigger: AAGAGCTTTTCTAAGACACCAGCAGGAATTAACAGA...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGGAAAGAAAAAGATATaGTTCACAGGTAATGGATAC +
Preference number: 2 (lower is better)
Translates to: HIHANFHFGESDDSGVLEGKKKI*FTGNGY
Trigger: GTATCCATTACCTGTGAAGCATATCTTTTTCTTTCC...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp CACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAAGGATCTTTGAAACACTaGAATGTCCTTAAATGCAAA +
Preference number: 2 (lower is better)
Translates to: HFGESDDSGVLEDNFPCKGSLKH*NVLKCK
Trigger: TTTGCATTTAAGGACATTGCAGTGTTTCAAAGATCC...TTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTCATCACTTTCACCAAAGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR GCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAATTTCTAGATACATCATaGTGGCCTTCTCAATTAGCT +
Preference number: 2 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEFLDTS*WPSQLA
Trigger: AGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAA...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR CCA 72 bp CAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTaGGCAGGAAGGGTGAAGGAGGCTGCACCTGGACAC +
Preference number: 3 (lower is better)
Translates to: QYPQVLVIQSSP*AGRVKEAAPGH
Trigger: GTGTCCAGGTGCAGCCTCCTTCACCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR GCA 72 bp CAGCTCGCTCCAAAGCCATGGCTGCTGTGTCTGGGGTaGCGTTTTCTAGATACATCATGCTGGCCTTCTCAA +
Preference number: 3 (lower is better)
Translates to: QLAPKPWLLCLG*RFLDTSCWPSQ
Trigger: TTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTTGGAGCGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR CCA 72 bp AGACAGAGACAGGGCATGGATGAGCAGGAATTACTTTaGCAGCGTGTACCTGCAGAACGCACACTGCTGGTG +
Preference number: 3 (lower is better)
Translates to: RQRQGMDEQELL*QRVPAERTLLV
Trigger: CACCAGCAGTGTGCGTTCTGCAGGTACACGCTGCCAAAGTAATTCCTGCTCATCCATGCCCTGTCTCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR GCA 72 bp CTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATaGTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTA +
Preference number: 3 (lower is better)
Translates to: LLCLGCRFLDTS*WPSQLAERPLV
Trigger: TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR CCA 72 bp CTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTaGCCTTCTCAATTAGCTGAACGGCCTCTGGTAGTT +
Preference number: 3 (lower is better)
Translates to: LCLGCRFLDTSC*PSQLAERPLVV
Trigger: AACTACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR-3UTR CAA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCTATTCCCAAGTCCTaGAAATGGCATGTCAGGATT +
Preference number: 3 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLSIPKS*KWHVRI
Trigger: AATCCTGACATGCCATTTCAAGGACTTGGGAATAGA...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CAA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGCCTGGACACAGCCTTTaGTGTGGTTTAAAGCATAGC +
Preference number: 3 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGPGHSL*CGLKHS
Trigger: GCTATGCTTTAAACCACACAAAAGGCTGTGTCCAGG...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CAA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTAGCAGGCATCTTTTGCTaGCTCAAACTGTTTGGCATT +
Preference number: 3 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVAGIFC*LKLFGI
Trigger: AATGCCAAACAGTTTGAGCAAGCAAAAGATGCCTGC...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580224.5
3UTR-3UTR CAA 90 bp CACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAACTTGAGCTTAGGAGTTaGAGAACAGCCTGTGCAACA +
Preference number: 3 (lower is better)
Translates to: HFGESDDSGVLEDNFPCKLELRS*RTACAT
Trigger: TGTTGCACAGGCTGTTCTCAAACTCCTAAGCTCAAG...TTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTCATCACTTTCACCAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR GCA 72 bp TCCAGAAGTTTCCGATTGGATCTAAAGGATACAAGCTaGAATGATGGGATCTTTGAAACACTGCAATGTCCT +
Preference number: 3 (lower is better)
Translates to: SRSFRLDLKDTS*NDGIFETLQCP
Trigger: AGGACATTGCAGTGTTTCAAAGATCCCATCATTGCAGCTTGTATCCTTTAGATCCAATCGGAAACTTCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CAA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAACCCATTAGCTCCTATTaGGTCAAGAACCAAGTAGAT +
Preference number: 3 (lower is better)
Translates to: HIHANFHFGESDDSGVLEPISSY*VKNQVD
Trigger: ATCTACTTGGTTCTTGACCAAATAGGAGCTAATGGG...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAATCATTGTCCATGTACTaGAAAAGCGGTGAGTTGCAG +
Preference number: 3 (lower is better)
Translates to: NHDCNEVRISLIYSQVLESLSMY*KSGELQ
Trigger: CTGCAACTCACCGCTTTTCAAGTACATGGACAATGA...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
3UTR-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAAAGAACCAAGTAGATTaGAAGACAGTCACTGTATGT +
Preference number: 3 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEKNQVD*KTVTVC
Trigger: ACATACAGTGACTGTCTTCAAATCTACTTGGTTCTT...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR GCA 72 bp TTCTGGAAGACAATTTTCCTTGTAAACACCAAGTTTTaGACTTTGGACTATGCTCTCAAGATAGAAACTTAC +
Preference number: 3 (lower is better)
Translates to: FWKTIFLVNTKF*TLDYALKIETY
Trigger: GTAAGTTTCTATCTTGAGAGCATAGTCCAAAGTGCAAAACTTGGTGTTTACAAGGAAAATTGTCTTCCAGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAGCGGGGCTGGGAGCCTaGCGGTGCGCCCCGCAAAGA +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSAGLGA*RCAPQR
Trigger: TCTTTGCGGGGCGCACCGGCAGGCTCCCAGCCCCGC...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR TCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACAGACGTGGAGAGAGGGTaGCCCTGCCTCTTCCTCCGG +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTDVERG*PCLFLR
Trigger: CCGGAGGAAGAGGCAGGGTCACCCTCTCTCCACGTC...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACGAGGAGGAAGCTGGTaGAGCGCGACAGTCGAGCGG +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTRGGSW*SATVER
Trigger: CCGCTCGACTGTCGCGCTGCACCAGCTTCCTCCTCG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR TCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAGACGTGGAGAGAGGGTaGCCCTGCCTCTTCCTCCGG +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSDVERG*PCLFLR
Trigger: CCGGAGGAAGAGGCAGGGTCACCCTCTCTCCACGTC...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACCACAGTCAGGTCTCTaGCGTGGAGAGAGGGTGACC +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTPQSGL*RGERVT
Trigger: GGTCACCCTCTCTCCACGTCAGAGACCTGACTGTGG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCACAGCAGCCGTGGCAGTaGCACCATCAGGCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSQQPWQ*HHQAWP
Trigger: AGGCCAAGCCTGATGGTGTCACTGCCACGGCTGCTG...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTAGAGGGCCCAAGCCGCTaGGACGAAGCGGGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVEGPSR*DEAGLG
Trigger: TCCCAGCCCCGCTTCGTCGCAGCGGCTTGGGCCCTC...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR TCA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCAGCAGCCGTGGCAGTaGCACCATCAGGCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERQQPWQ*HHQAWP
Trigger: AGGCCAAGCCTGATGGTGTCACTGCCACGGCTGCTG...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGCCACAGTCAGGTCTCTaGCGTGGAGAGAGGGTGACC +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGPQSGL*RGERVT
Trigger: GGTCACCCTCTCTCCACGTCAGAGACCTGACTGTGG...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCACTCCAAAGCCATGGCTaGTGTGTCTGGGGTGCCGTT +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSLQSHG*CVWGAV
Trigger: AACGGCACCCCAGACACAGCAGCCATGGCTTTGGAG...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGGTCAGGTCTCTGACGTaGAGAGAGGGTGACCCTGCC +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGVRSLT*REGDPA
Trigger: GGCAGGGTCACCCTCTCTCCACGTCAGAGACCTGAC...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGCTCGCTCCAAAGCCATaGCTGCTGTGTCTGGGGTGC +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGLAPKP*LLCLGC
Trigger: GCACCCCAGACACAGCAGCCATGGCTTTGGAGCGAG...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTACGCCGAGGAGGAAGCTaGTGCAGCGCGACAGTCGAG +
Preference number: 4 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVRRGGS*CSATVE
Trigger: CTCGACTGTCGCGCTGCACCAGCTTCCTCCTCGGCG...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000580483.5
3UTR CAA 72 bp GGAAGGGTGAAGGAGGCTGCACCTGGACACAGCCTTTaGTGTGGTTTAAAGCATAGCTGCGCTGCTGCTACA +
Preference number: 4 (lower is better)
Translates to: GRVKEAAPGHSL*CGLKHSCAAAT
Trigger: TGTAGCAGCAGCGCAGCTATGCTTTAAACCACACAAAAGGCTGTGTCCAGGTGCAGCCTCCTTCACCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp TCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCCAGGCAGGCATCTTTTaGTTGCTCAAACTGTTTGGC +
Preference number: 4 (lower is better)
Translates to: STHPRPPPKGGCYSKLSRQAGIF*LLKLFG
Trigger: GCCAAACAGTTTGAGCAAGCAAAAGATGCCTGCCTG...GCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGAAGGGTGAAGGAGGCTaGACCTGGACACAGCCTTTT +
Preference number: 4 (lower is better)
Translates to: TRDHLPKEDVILSSPAELKGEGG*TWTQPF
Trigger: AAAAGGCTGTGTCCAGGTGCAGCCTCCTTCACCCTT...CAGTTCTGCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATGACGTGGAGAGAGGGTaGCCCTGCCTCTTCCTCCGG +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDDVERG*PCLFLR
Trigger: CCGGAGGAAGAGGCAGGGTCACCCTCTCTCCACGTC...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCAGTCTTCACTGCCATTaGACCCAGGGATGCTATAGC +
Preference number: 4 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLSLHCH*TQGCYS
Trigger: GCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACT...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACAAGTCTTCACTGCCATTaGACCCAGGGATGCTATAGC +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTSLHCH*TQGCYS
Trigger: GCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACT...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCCAGACATCTGACACCTaGTCTTGGTCTTGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLQTSDT*SWSCWS
Trigger: TGACCAGCAAGACCAAGATCAGGTGTCAGATGTCTG...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTCAGACATCTGACACCTaGTCTTGGTCTTGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPQTSDT*SWSCWS
Trigger: TGACCAGCAAGACCAAGATCAGGTGTCAGATGTCTG...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACAGACATCTGACACCTaGTCTTGGTCTTGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTQTSDT*SWSCWS
Trigger: TGACCAGCAAGACCAAGATCAGGTGTCAGATGTCTG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTCAGGTGATTTCTTCTTaGTTCCCCCTCCTGGAACCA +
Preference number: 4 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPQVISS*FPLLEP
Trigger: TGGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTG...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCCAGGTGATTTCTTCTTaGTTCCCCCTCCTGGAACCA +
Preference number: 4 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLAQVISS*FPLLEP
Trigger: TGGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTG...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp ACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGGAGACAGGGCATGGATaGGCAGGAATTACTTTGGCA +
Preference number: 4 (lower is better)
Translates to: TRDHLPKEDVILSSPAELETGHG*AGITLA
Trigger: TGCCAAAGTAATTCCTGCTCATCCATGCCCTGTCTC...CAGTTCTGCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGTTGGCAGCGTGTACCTaGAGAACGCACACTGCTGGT +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGLAACT*RTHTAG
Trigger: ACCAGCAGTGTGCGTTCTGCAGGTACACGCTGCCAA...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTAGTCAGGTCTCTGACGTaGAGAGAGGGTGACCCTGCC +
Preference number: 4 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVVRSLT*REGDPA
Trigger: GGCAGGGTCACCCTCTCTCCACGTCAGAGACCTGAC...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTACTCGCTCCAAAGCCATaGCTGCTGTGTCTGGGGTGC +
Preference number: 4 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVLAPKP*LLCLGC
Trigger: GCACCCCAGACACAGCAGCCATGGCTTTGGAGCGAG...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCAGTATTTCTCTGCTTTaGCGAGGTGTTCCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLASISLL*RGVPAP
Trigger: AGGGGCTGGAACACCTCGCCAAAGCAGAGAAATACT...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CCA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTATTTCTCTGCTTTaGCGAGGTGTTCCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPSISLL*RGVPAP
Trigger: AGGGGCTGGAACACCTCGCCAAAGCAGAGAAATAGA...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR TCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATCAGCAGCCGTGGCAGTaGCACCATCAGGCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDQQPWQ*HHQAWP
Trigger: AGGCCAAGCCTGATGGTGTCACTGCCACGGCTGCTG...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACAGGCAGGCATCTTTTaGTTGCTCAAACTGTTTGGC +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTQAGIF*LLKLFG
Trigger: GCCAAACAGTTTGAGCAAGCAAAAGATGCCTGCCTG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR GCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACTGCTGTGTCTGGGGTaGCGTTTTCTAGATACATCA +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTLLCLG*RFLDTS
Trigger: TGATGTATCTAGAAAACGGCACCCCAGACACAGCAG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACAGCATCTCTATTTCTCTaGTTTGGCGAGGTGTTCCAG +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTASLFL*FGEVFQ
Trigger: CTGGAACACCTCGCCAAAGCAGAGAAATAGAGATGC...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR CCA 90 bp ATTATTTTCATGGGCAACAGCTTCCCTCAGGCAGGCATCTTTTGCTTGCTCAAAGTCAGGTCTCTGACGTaGAGAGAGGGTGACCCTGCC +
Preference number: 4 (lower is better)
Translates to: IIFMGNSFPQAGIFCLLKVRSLT*REGDPA
Trigger: GGCAGGGTCACCCTCTCTCCACGTCAGAGACCTGAC...TTTGAGCAAGCAAAAGATGCCTGCCTGAGGGAAGCTGTTGCCCATGAAAATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR TCA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGGCCTTCTCAATTAGCTaGACGGCCTCTGGTAGTTTC +
Preference number: 4 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERAFSIS*TASGSF
Trigger: GAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGC...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGAGTCTTCACTGCCATTaGACCCAGGGATGCTATAGC +
Preference number: 4 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERSLHCH*TQGCYS
Trigger: GCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACT...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AGCACAGTCTTCACTGCCATTGAACCCAGGGATGCTATAGCTCTCCCGGACACACATTGTCCATGTACTTaGAAAGCGGTGAGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: STVFTAIEPRDAIALPDTHCPCT*KAVSCR
Trigger: TCTGCAACTCACCGCTTTTCAAGTACATGGACAATG...TGTGTCCGGGAGAGCTATAGCATCCCTGGGTTCAATGGCAGTGAAGACTGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCCATTGTCCATGTACTTaGAAAGCGGTGAGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLAHCPCT*KAVSCR
Trigger: TCTGCAACTCACCGCTTTTCAAGTACATGGACAATG...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp TATTATTTTCATGGGCAACAGCTTCCCTCAGGCAGGCATCTTTTGCTTGCTCAACTCCAAAGCCATGGCTaGTGTGTCTGGGGTGCCGTT +
Preference number: 4 (lower is better)
Translates to: YYFHGQQLPSGRHLLLAQLQSHG*CVWGAV
Trigger: AACGGCACCCCAGACACAGCAGCCATGGCTTTGGAG...TTGAGCAAGCAAAAGATGCCTGCCTGAGGGAAGCTGTTGCCCATGAAAATAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR GCA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTTTCTGAATAGAGAGTaGCGCCTCATCAAACCTACG +
Preference number: 4 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPFLNRE*RLIKPT
Trigger: CGTAGGTTTGATGAGGCGGCACTCTCTATTCAGAAA...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCCTTGCTCATAAGCTTTaGCAGCATGAAAAAGAGCCC +
Preference number: 4 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLLAHKL*QHEKEP
Trigger: GGGCTCTTTTTCATGCTGCCAAAGCTTATGAGCAAG...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCGACAGAGACAGGGCATaGATGAGCAGGAATTACTTT +
Preference number: 4 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLDRDRA*MSRNYF
Trigger: AAAGTAATTCCTGCTCATCCATGCCCTGTCTCTGTC...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp GGCAGCATGAAAAAGAGCCCTATTATTTTCATGGGCAACAGCTTCCCTCAGGCACTGTGGTGTTGCAGGTaGTTTCTTCTTGATTCCCCC +
Preference number: 4 (lower is better)
Translates to: GSMKKSPIIFMGNSFPQALWCCR*FLLDSP
Trigger: GGGGGAATCAAGAAGAAATCACCTGCAACACCACAG...TGCCTGAGGGAAGCTGTTGCCCATGAAAATAATAGGGCTCTTTTTCATGCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR GCA 90 bp TCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCTTTCTAGATACATCATaGTGGCCTTCTCAATTAGCT +
Preference number: 4 (lower is better)
Translates to: STHPRPPPKGGCYSKLSRFLDTS*WPSQLA
Trigger: AGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAA...GCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGCTGCTGTGTCTGGGGTaGCGTTTTCTAGATACATCA +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGLLCLG*RFLDTS
Trigger: TGATGTATCTAGAAAACGGCACCCCAGACACAGCAG...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCACTATTCCCAAGTCCTTaGAATGGCATGTCAGGATTT +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSLFPSP*NGMSGF
Trigger: AAATCCTGACATGCCATTTCAAGGACTTGGGAATAG...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCCAGGCATCTTTTGCTTaGTCAAACTGTTTGGCATTT +
Preference number: 4 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLAQASFA*SNCLAF
Trigger: AAATGCCAAACAGTTTGAGCAAGCAAAAGATGCCTG...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR GCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAACTCCAAAGCCATGGCTaGTGTGTCTGGGGTGCCGTT +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLELQSHG*CVWGAV
Trigger: AACGGCACCCCAGACACAGCAGCCATGGCTTTGGAG...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGGTAAACACCAAGTTTTaGACTTTGGACTATGCTCTC +
Preference number: 4 (lower is better)
Translates to: TRDHLPKEDVILSSPAELVNTKF*TLDYAL
Trigger: GAGAGCATAGTCCAAAGTGCAAAACTTGGTGTTTAC...CAGTTCTGCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGCTATTCCCAAGTCCTTaGAATGGCATGTCAGGATTT +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGLFPSP*NGMSGF
Trigger: AAATCCTGACATGCCATTTCAAGGACTTGGGAATAG...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGTCTCCCGCAGAACTGTaGCTAAAATCACTTCTGATA +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGSPAEL*LKSLLI
Trigger: TATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGA...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTACTGCTGTGTCTGGGGTaGCGTTTTCTAGATACATCA +
Preference number: 4 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVLLCLG*RFLDTS
Trigger: TGATGTATCTAGAAAACGGCACCCCAGACACAGCAG...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp ACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGCTAAAGGATACAAGCTaGAATGATGGGATCTTTGAA +
Preference number: 4 (lower is better)
Translates to: TRDHLPKEDVILSSPAELLKDTS*NDGIFE
Trigger: TTCAAAGATCCCATCATTGCAGCTTGTATCCTTTAG...CAGTTCTGCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATGGTATTTCTCTGCTTTaGCGAGGTGTTCCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDGISLL*RGVPAP
Trigger: AGGGGCTGGAACACCTCGCCAAAGCAGAGAAATACC...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp GAGCCCTATTATTTTCATGGGCAACAGCTTCCCTCAGGCAGGCATCTTTTGCTTCTTGCTCATAAGCTTTaGCAGCATGAAAAAGAGCCC +
Preference number: 4 (lower is better)
Translates to: EPYYFHGQQLPSGRHLLLLAHKL*QHEKEP
Trigger: GGGCTCTTTTTCATGCTGCCAAAGCTTATGAGCAAG...AAGCAAAAGATGCCTGCCTGAGGGAAGCTGTTGCCCATGAAAATAATAGGGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAACTCGCTCCAAAGCCATaGCTGCTGTGTCTGGGGTGC +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLELAPKP*LLCLGC
Trigger: GCACCCCAGACACAGCAGCCATGGCTTTGGAGCGAG...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000322897.11
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCACTCGTACTAGTAGTCTaGAGGCTTTTCCTAGTAATT +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSLVLVV*RLFLVI
Trigger: AATTACTAGGAAAAGCCTCCAGACTACTAGTACGAG...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGAAGGAGGCTGCACCTaGACACAGCCTTTTGTGTGG +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLEEGGCT*TQPFVW
Trigger: CCACACAAAAGGCTGTGTCCAGGTGCAGCCTCCTTC...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATGCCTTCTCAATTAGCTaGACGGCCTCTGGTAGTTTC +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDAFSIS*TASGSF
Trigger: GAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGC...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGACATTAGCTGTCTGTTaGTATAACTGTACAGCCTTC +
Preference number: 4 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERTLAVC*YNCTAF
Trigger: GAAGGCTGTACAGTTATATCAACAGACAGCTAATGT...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATCAGGTGATTTCTTCTTaGTTCCCCCTCCTGGAACCA +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDQVISS*FPLLEP
Trigger: TGGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTG...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCGGAAAGAAAAAGATATaGTTCACAGGTAATGGATAC +
Preference number: 4 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLGKKKI*FTGNGY
Trigger: GTATCCATTACCTGTGAAGCATATCTTTTTCTTTCC...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp AGCTTTGGCAGCATGAAAAAGAGCCCTATTATTTTCATGGGCAACAGCTTCCCTGCAACAGTATTTCTCTaGTTTGGCGAGGTGTTCCAG +
Preference number: 4 (lower is better)
Translates to: SFGSMKKSPIIFMGNSFPATVFL*FGEVFQ
Trigger: CTGGAACACCTCGCCAAAGCAGAGAAATACTGTTGC...AGGGAAGCTGTTGCCCATGAAAATAATAGGGCTCTTTTTCATGCTGCCAAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCATCTGTTAATTCCTGCTaGTGTCTTAGAAAAGCTCTT +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSSVNSC*CLRKAL
Trigger: AAGAGCTTTTCTAAGACACCAGCAGGAATTAACAGA...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAACTGTGGTGTTGCAGGTaGTTTCTTCTTGATTCCCCC +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLELWCCR*FLLDSP
Trigger: GGGGGAATCAAGAAGAAATCACCTGCAACACCACAG...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp AGCTTTGGCAGCATGAAAAAGAGCCCTATTATTTTCATGGGCAACAGCTTCCCTTTTCTGAATAGAGAGTaGCGCCTCATCAAACCTACG +
Preference number: 4 (lower is better)
Translates to: SFGSMKKSPIIFMGNSFPFLNRE*RLIKPT
Trigger: CGTAGGTTTGATGAGGCGGCACTCTCTATTCAGAAA...AGGGAAGCTGTTGCCCATGAAAATAATAGGGCTCTTTTTCATGCTGCCAAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR GCA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAGGAAAGAAAAAGATATaGTTCACAGGTAATGGATAC +
Preference number: 4 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSGKKKI*FTGNGY
Trigger: GTATCCATTACCTGTGAAGCATATCTTTTTCTTTCC...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CCA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGTCTGTTAATTCCTGCTaGTGTCTTAGAAAAGCTCTT +
Preference number: 4 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGSVNSC*CLRKAL
Trigger: AAGAGCTTTTCTAAGACACCAGCAGGAATTAACAGA...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATCATTGTCCATGTACTTaGAAAGCGGTGAGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDHCPCT*KAVSCR
Trigger: TCTGCAACTCACCGCTTTTCAAGTACATGGACAATG...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGTTTTCTGTTAATTCCTaGTGGTGTCTTAGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERFSVNS*WCLRKA
Trigger: AGCTTTTCTAAGACACCAGCAGGAATTAACAGAAAA...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAGCCTTCTCAATTAGCTaGACGGCCTCTGGTAGTTTC +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEAFSIS*TASGSF
Trigger: GAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGC...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000322897.11
ENST00000580224.5
ENST00000580483.5
CDS-3UTR TCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAACTGTGGTGTTGCAGGTaGTTTCTTCTTGATTCCCCC +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLELWCCR*FLLDSP
Trigger: GGGGGAATCAAGAAGAAATCACCTGCAACACCACAG...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000322897.11
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATGCTGCTGCTACAGAATaGACTTCATCATCACCTTTT +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDAAATE*TSSSPF
Trigger: AAAAGGTGATGATGAAGTGCATTCTGTAGCAGCAGC...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp CACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAAGAGCAGGAATTACTTTaGCAGCGTGTACCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: HFGESDDSGVLEDNFPCKEQELL*QRVPAE
Trigger: TTCTGCAGGTACACGCTGCCAAAGTAATTCCTGCTC...TTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTCATCACTTTCACCAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATAATATCCCCAAGTCCTaGTTATTCAATCCTCACCGT +
Preference number: 4 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDNIPKS*LFNPHR
Trigger: ACGGTGAGGATTGAATAACCAGGACTTGGGGATATT...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAGCCCTATTATTTTCATaGGCAACAGCTTCCCTCAGG +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEALLFS*ATASLR
Trigger: CCTGAGGGAAGCTGTTGCCCATGAAAATAATAGGGC...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000322897.11
ENST00000580224.5
CDS-3UTR CCA 90 bp ATTATTTTCATGGGCAACAGCTTCCCTCAGGCAGGCATCTTTTGCTTGCTCAAATCTGTTAATTCCTGCTaGTGTCTTAGAAAAGCTCTT +
Preference number: 4 (lower is better)
Translates to: IIFMGNSFPQAGIFCLLKSVNSC*CLRKAL
Trigger: AAGAGCTTTTCTAAGACACCAGCAGGAATTAACAGA...TTTGAGCAAGCAAAAGATGCCTGCCTGAGGGAAGCTGTTGCCCATGAAAATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAACAGCCTGTGCAACATaGAGCAACTCCATCTCAACA +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLETACAT*SNSIST
Trigger: TGTTGAGATGGAGTTGCTCCATGTTGCACAGGCTGT...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAACATTAGCTGTCTGTTaGTATAACTGTACAGCCTTC +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLETLAVC*YNCTAF
Trigger: GAAGGCTGTACAGTTATATCAACAGACAGCTAATGT...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAACAGGCATCTTTTGCTTaGTCAAACTGTTTGGCATTT +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLEQASFA*SNCLAF
Trigger: AAATGCCAAACAGTTTGAGCAAGCAAAAGATGCCTG...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR GCA 90 bp ATTATTTTCATGGGCAACAGCTTCCCTCAGGCAGGCATCTTTTGCTTGCTCAAAGGAAAGAAAAAGATATaGTTCACAGGTAATGGATAC +
Preference number: 4 (lower is better)
Translates to: IIFMGNSFPQAGIFCLLKGKKKI*FTGNGY
Trigger: GTATCCATTACCTGTGAAGCATATCTTTTTCTTTCC...TTTGAGCAAGCAAAAGATGCCTGCCTGAGGGAAGCTGTTGCCCATGAAAATAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAACTCGTACTAGTAGTCTaGAGGCTTTTCCTAGTAATT +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLELVLVV*RLFLVI
Trigger: AATTACTAGGAAAAGCCTCCAGACTACTAGTACGAG...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAAGCCACACAACAGGGTaGAAAAGGAATGTTTCGAAA +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLESHTTG*KRNVSK
Trigger: TTTCGAAACATTCCTTTTTCACCCTGTTGTGTGGCT...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR TCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAACATTAGCTGTCTGTTaGTATAACTGTACAGCCTTC +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLETLAVC*YNCTAF
Trigger: GAAGGCTGTACAGTTATATCAACAGACAGCTAATGT...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000322897.11
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAATTTTCTGTTAATTCCTaGTGGTGTCTTAGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: HIHANFHFGESDDSGVLEFSVNS*WCLRKA
Trigger: AGCTTTTCTAAGACACCAGCAGGAATTAACAGAAAA...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAACTCGTACTAGTAGTCTaGAGGCTTTTCCTAGTAATT +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLELVLVV*RLFLVI
Trigger: AATTACTAGGAAAAGCCTCCAGACTACTAGTACGAG...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000322897.11
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAATTTTCTGTTAATTCCTaGTGGTGTCTTAGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEFSVNS*WCLRKA
Trigger: AGCTTTTCTAAGACACCAGCAGGAATTAACAGAAAA...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000322897.11
ENST00000580224.5
ENST00000580483.5
CDS-3UTR GCA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAGGATCTTTGAAACACTaGAATGTCCTTAAATGCAAA +
Preference number: 4 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEGSLKH*NVLKCK
Trigger: TTTGCATTTAAGGACATTGCAGTGTTTCAAAGATCC...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR CAA 72 bp CAAACAAAAAGGTATTCATTACCCATTAGCTCCTATTaGGTCAAGAACCAAGTAGATTTGAAGACAGTCACT +
Preference number: 4 (lower is better)
Translates to: QTKRYSLPISSY*VKNQVDLKTVT
Trigger: AGTGACTGTCTTCAAATCTACTTGGTTCTTGACCAAATAGGAGCTAATGGGTAATGAATACCTTTTTGTTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000322897.11
3UTR CAA 72 bp GTTCTGGAAGACAATTTTCCTTGTAAACACCAAGTTTaGCACTTTGGACTATGCTCTCAAGATAGAAACTTA +
Preference number: 4 (lower is better)
Translates to: VLEDNFPCKHQV*HFGLCSQDRNL
Trigger: TAAGTTTCTATCTTGAGAGCATAGTCCAAAGTGCAAAACTTGGTGTTTACAAGGAAAATTGTCTTCCAGAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS GCA 90 bp GCGCGACAGTCGAGCGGCTACGGAGGGCCGGAGGGCCCAAGCCGCTaGGACGAAGCGGGGCTGGGAGCCTGCCGGTGCGCCCCGCAAAGA +
Preference number: 5 (lower is better)
Translates to: ARQSSGYGGPEGPSR*DEAGLGACRCAPQR
Trigger: TCTTTGCGGGGCGCACCGGCAGGCTCCCAGCCCCGCTTCGTCGCAGCGGCTTGGGCCCTCCGGCCCTCCGTAGCCGCTCGACTGTCGCGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR CAA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTGTGACACCATCAGGCTaGGCCTGTGGTGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPVTPSG*ACGVAG
Trigger: ACCTGCAACACCACAGGCCAAGCCTGATGGTGTCAC...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CAA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCGTGACACCATCAGGCTaGGCCTGTGGTGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLAVTPSG*ACGVAG
Trigger: ACCTGCAACACCACAGGCCAAGCCTGATGGTGTCAC...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CAA 90 bp ACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGAGGTATTTCTCTGCTTaGGCGAGGTGTTCCAGCCCC +
Preference number: 5 (lower is better)
Translates to: TRDHLPKEDVILSSPAELRYFSA*ARCSSP
Trigger: GGGGCTGGAACACCTCGCCAAAGCAGAGAAATACCT...CAGTTCTGCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp TCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCCACCTGATCTTGGTCTaGCTGGTCATAACCTTCAAG +
Preference number: 5 (lower is better)
Translates to: STHPRPPPKGGCYSKLSRHLILV*LVITFK
Trigger: CTTGAAGGTTATGACCAGCAAGACCAAGATCAGGTG...GCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCGCAGGTGATTTCTTCTaGATTCCCCCTCCTGGAACC +
Preference number: 5 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLAGDFF*IPPPGT
Trigger: GGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTGC...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCGCAGGTGATTTCTTCTaGATTCCCCCTCCTGGAACC +
Preference number: 5 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLAAGDFF*IPPPGT
Trigger: GGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTGC...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CAA 90 bp ATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAGCAGGTGATTTCTTCTaGATTCCCCCTCCTGGAACC +
Preference number: 5 (lower is better)
Translates to: MAAVSGVPFSRYIMLAFSAGDFF*IPPPGT
Trigger: GGTTCCAGGAGGGGGAATCAAGAAGAAATCACCTGC...TGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CAA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCAGTATTTCTCTGCTTaGGCGAGGTGTTCCAGCCCC +
Preference number: 5 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERQYFSA*ARCSSP
Trigger: GGGGCTGGAACACCTCGCCAAAGCAGAGAAATACTG...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CAA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCTCTATTTCTCTGCTTaGGCGAGGTGTTCCAGCCCC +
Preference number: 5 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERLYFSA*ARCSSP
Trigger: GGGGCTGGAACACCTCGCCAAAGCAGAGAAATAGAG...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR CAA 90 bp TCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCTCCCGCCCCATTAGCTCCTATTaGGTCAAGAACCAAGTAGAT +
Preference number: 5 (lower is better)
Translates to: STHPRPPPKGGCYSKLSRPISSY*VKNQVD
Trigger: ATCTACTTGGTTCTTGACCAAATAGGAGCTAATGGG...GCGGGAGAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp CCAACATCCACGCACCCGAGACCACCTCCCAAAGGAGGATGTTATTCTAAGCTCGCAGGCATCTTTTGCTaGCTCAAACTGTTTGGCATT +
Preference number: 5 (lower is better)
Translates to: PTSTHPRPPPKGGCYSKLAGIFC*LKLFGI
Trigger: AATGCCAAACAGTTTGAGCAAGCAAAAGATGCCTGC...GAGCTTAGAATAACATCCTCCTTTGGGAGGTGGTCTCGGGTGCGTGGATGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCATTGTCCATGTACTaGAAAAGCGGTGAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPSLSMY*KSGELQ
Trigger: CTGCAACTCACCGCTTTTCAAGTACATGGACAATGA...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS TCA 90 bp GGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTaGACGGCCTCTGGTAGTTTCTGCATCTCCTTTGGGCAAAGGATA +
Preference number: 5 (lower is better)
Translates to: GVPFSRYIMLAFSIS*TASGSFCISFGQRI
Trigger: TATCCTTTGCCCAAAGGAGATGCAGAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000583367.1
CDS-3UTR CAA 90 bp CTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCAACATCATTCCAGCTaGCTCATAAGCTTTGGCAGC +
Preference number: 5 (lower is better)
Translates to: LGCRFLDTSCWPSQLAERQHHSS*LISFGS
Trigger: GCTGCCAAAGCTTATGAGCAAGCTGGAATGATGTTG...CCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CAA 90 bp AAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTATTCCCAAGTCCTaGAAATGGCATGTCAGGATT +
Preference number: 5 (lower is better)
Translates to: KPWLLCLGCRFLDTSCWPSIPKS*KWHVRI
Trigger: AATCCTGACATGCCATTTCAAGGACTTGGGAATAGA...AGGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CAA 90 bp AAAGCCATGGCTGCTGTGTCTGGGGTGCCGTTTTCTAGATACATCATGCTGGCCTCTATTCCCAAGTCCTaGAAATGGCATGTCAGGATT +
Preference number: 5 (lower is better)
Translates to: KAMAAVSGVPFSRYIMLASIPKS*KWHVRI
Trigger: AATCCTGACATGCCATTTCAAGGACTTGGGAATAGA...GGCCAGCATGATGTATCTAGAAAACGGCACCCCAGACACAGCAGCCATGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS TCA 90 bp GGGGTGCCGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTaGACGGCCTCTGGTAGTTTCTGCATCTCTATTTCTCTGCTTTGG +
Preference number: 5 (lower is better)
Translates to: GVPFSRYIMLAFSIS*TASGSFCISISLLW
Trigger: CCAAAGCAGAGAAATAGAGATGCAGAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACGGCACCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS-3UTR CAA 90 bp ACAAACAATATCCCCAAGTCCTGGTTATTCAATCCTCACCGTGGGCAGGAAGGGTCATTGTCCATGTACTaGAAAAGCGGTGAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: TNNIPKSWLFNPHRGQEGSLSMY*KSGELQ
Trigger: CTGCAACTCACCGCTTTTCAAGTACATGGACAATGA...CCCTTCCTGCCCACGGTGAGGATTGAATAACCAGGACTTGGGGATATTGTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTATCAGGCAGGCATCTTTaGCTTGCTCAAACTGTTTGG +
Preference number: 5 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVSGRHL*LAQTVW
Trigger: CCAAACAGTTTGAGCAAGCAAAAGATGCCTGCCTGA...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CAA 90 bp CGTTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTGAACGGCCTCTGGTACACCTGATCTTGGTCTaGCTGGTCATAACCTTCAAG +
Preference number: 5 (lower is better)
Translates to: RFLDTSCWPSQLAERPLVHLILV*LVITFK
Trigger: CTTGAAGGTTATGACCAGCAAGACCAAGATCAGGTG...TACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000580224.5
ENST00000580483.5
CDS-3UTR CAA 90 bp AGAGCCCTATTATTTTCATGGGCAACAGCTTCCCTCAGGCAGGCATCTTTTGCTTCATTGTCCATGTACTaGAAAAGCGGTGAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: RALLFSWATASLRQASFASLSMY*KSGELQ
Trigger: CTGCAACTCACCGCTTTTCAAGTACATGGACAATGA...AGCAAAAGATGCCTGCCTGAGGGAAGCTGTTGCCCATGAAAATAATAGGGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CAA 90 bp CACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAAGTGACACCATCAGGCTaGGCCTGTGGTGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: HFGESDDSGVLEDNFPCKVTPSG*ACGVAG
Trigger: ACCTGCAACACCACAGGCCAAGCCTGATGGTGTCAC...TTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTCATCACTTTCACCAAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp AGCTTTGGCAGCATGAAAAAGAGCCCTATTATTTTCATGGGCAACAGCTTCCCTCACCTGATCTTGGTCTaGCTGGTCATAACCTTCAAG +
Preference number: 5 (lower is better)
Translates to: SFGSMKKSPIIFMGNSFPHLILV*LVITFK
Trigger: CTTGAAGGTTATGACCAGCAAGACCAAGATCAGGTG...AGGGAAGCTGTTGCCCATGAAAATAATAGGGCTCTTTTTCATGCTGCCAAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000580224.5
CDS-3UTR CAA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATTCAGGCAGGCATCTTTaGCTTGCTCAAACTGTTTGG +
Preference number: 5 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDSGRHL*LAQTVW
Trigger: CCAAACAGTTTGAGCAAGCAAAAGATGCCTGCCTGA...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATCCTGGACACAGCCTTTaGTGTGGTTTAAAGCATAGC +
Preference number: 5 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDPGHSL*CGLKHS
Trigger: GCTATGCTTTAAACCACACAAAAGGCTGTGTCCAGG...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS TCA 90 bp TCCAACCAAGTAACAGATGAAGGAAACTGTTCCCTTTCATGTTGCTaGGCCAGGGTTCAACCAATAAAAGCACAGTGCATGATAAATTTG +
Preference number: 5 (lower is better)
Translates to: SNQVTDEGNCSLSCC*ARVQPIKAQCMINL
Trigger: CAAATTTATCATGCACTGTGCTTTTATTGGTTGAACCCTGGCTCAGCAACATGAAAGGGAACAGTTTCCTTCATCTGTTACTTGGTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000582978.5
CDS-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAACAACATCATTCCAGCTaGCTCATAAGCTTTGGCAGC +
Preference number: 5 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEQHHSS*LISFGS
Trigger: GCTGCCAAAGCTTATGAGCAAGCTGGAATGATGTTG...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000322897.11
ENST00000580224.5
CDS-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAACTTGAGCTTAGGAGTTaGAGAACAGCCTGTGCAACA +
Preference number: 5 (lower is better)
Translates to: NHDCNEVRISLIYSQVLELELRS*RTACAT
Trigger: TGTTGCACAGGCTGTTCTCAAACTCCTAAGCTCAAG...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGCAATGATGGGATCTTaGAAACACTGCAATGTCCTT +
Preference number: 5 (lower is better)
Translates to: HIHANFHFGESDDSGVLEAMMGS*KHCNVL
Trigger: AAGGACATTGCAGTGTTTCAAAGATCCCATCATTGC...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAGCAGGCATCTTTTGCTaGCTCAAACTGTTTGGCATT +
Preference number: 5 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEAGIFC*LKLFGI
Trigger: AATGCCAAACAGTTTGAGCAAGCAAAAGATGCCTGC...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000322897.11
ENST00000580224.5
CDS-3UTR CAA 90 bp GGAGGATGTTATTCTAAGCTCTCCCGCAGAACTGTGACTAAAATCACTTCTGATAAGAACCAAGTAGATTaGAAGACAGTCACTGTATGT +
Preference number: 5 (lower is better)
Translates to: GGCYSKLSRRTVTKITSDKNQVD*KTVTVC
Trigger: ACATACAGTGACTGTCTTCAAATCTACTTGGTTCTT...ATCAGAAGTGATTTTAGTCACAGTTCTGCGGGAGAGCTTAGAATAACATCCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp CACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAGACAATTTTCCTTGTAAATCCAGAAGTTTCCGATaGGATCTAAAGGATACAAGC +
Preference number: 5 (lower is better)
Translates to: HFGESDDSGVLEDNFPCKSRSFR*DLKDTS
Trigger: GCTTGTATCCTTTAGATCCAATCGGAAACTTCTGGA...TTTACAAGGAAAATTGTCTTCCAGAACTCCACTGTCATCACTTTCACCAAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp CATATTCATGCAAACTTCCACTTTGGTGAAAGTGATGACAGTGGAGTTCTGGAAACCAAGTTTTGCACTTaGGACTATGCTCTCAAGATA +
Preference number: 5 (lower is better)
Translates to: HIHANFHFGESDDSGVLETKFCT*DYALKI
Trigger: TATCTTGAGAGCATAGTCCAAAGTGCAAAACTTGGT...TTCCAGAACTCCACTGTCATCACTTTCACCAAAGTGGAAGTTTGCATGAATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS TCA 90 bp TTATTTTTCCTTGAGAGAGATATTATAATCCAACCAAGTAACAGATaGAGGAAACTGTTCCCTTTCATGTTGCTGAGCCAGGGTTCAACC +
Preference number: 5 (lower is better)
Translates to: LFFLERDIIIQPSNR*RKLFPFMLLSQGST
Trigger: GGTTGAACCCTGGCTCAGCAACATGAAAGGGAACAGTTTCCTTCATCTGTTACTTGGTTGGATTATAATATCTCTCTCAAGGAAAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000582978.5
CDS-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAAATGCAAACTTCCACTTaGGTGAAAGTGATGACAGTG +
Preference number: 5 (lower is better)
Translates to: NHDCNEVRISLIYSQVLEMQTST*VKVMTV
Trigger: CACTGTCATCACTTTCACCAAAGTGGAAGTTTGCAT...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS-3UTR CAA 90 bp AATCATGACTGTAATGAAGTACGGATATCCCTAATCTATTCCCAAGTCCTTGAATGTAAACACCAAGTTTaGCACTTTGGACTATGCTCT +
Preference number: 5 (lower is better)
Translates to: NHDCNEVRISLIYSQVLECKHQV*HFGLCS
Trigger: AGAGCATAGTCCAAAGTGCAAAACTTGGTGTTTACA...TTCAAGGACTTGGGAATAGATTAGGGATATCCGTACTTCATTACAGTCATGATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322897.11
CDS GCA 72 bp TCGAGCGGCTACGGAGGGCCGGAGGGCCCAAGCCGCTaGGACGAAGCGGGGCTGGGAGCCTGCCGGTGCGCC +
Preference number: 6 (lower is better)
Translates to: SSGYGGPEGPSR*DEAGLGACRCA
Trigger: GGCGCACCGGCAGGCTCCCAGCCCCGCTTCGTCGCAGCGGCTTGGGCCCTCCGGCCCTCCGTAGCCGCTCGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000580483.5
CDS CAA 90 bp GGGCGGTGGTTCTCAACAGAGCGATGTTGTTCCCCAGATGACATTTaGGGTTGCCACAAATGGGGAAGAGATGCGACCGGCACCCAGCAG +
Preference number: 6 (lower is better)
Translates to: GRWFSTERCCSPDDI*GCHKWGRDATGTQQ
Trigger: CTGCTGGGTGCCGGTCGCATCTCTTCCCCATTTGTGGCAACCCAAAATGTCATCTGGGGAACAACATCGCTCTGTTGAGAACCACCGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000582472.3
CDS GCA 72 bp AACGAAGCACAGTCCCTGCCCACAGGGACAGTAAAATaGCAGATGACAAAGGTTCACCGAGGAGTTTTTGGG +
Preference number: 6 (lower is better)
Translates to: NEAQSLPTGTVK*QMTKVHRGVFG
Trigger: CCCAAAAACTCCTCGGTGAACCTTTGTCATCTGGCATTTTACTGTCCCTGTGGGCAGGGACTGTGCTTCGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000582472.3
CDS CAA 72 bp TTCTCAACAGAGCGATGTTGTTCCCCAGATGACATTTaGGGTTGCCACAAATGGGGAAGAGATGCGACCGGC +
Preference number: 6 (lower is better)
Translates to: FSTERCCSPDDI*GCHKWGRDATG
Trigger: GCCGGTCGCATCTCTTCCCCATTTGTGGCAACCCAAAATGTCATCTGGGGAACAACATCGCTCTGTTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000582472.3
CDS TCA 72 bp TGTGTCCATGTGTCCTTGTGGTTCAATTCCCACGTATaGGTGAGAACATGCGGTGTTTGGTTTTCTGTTCCT +
Preference number: 6 (lower is better)
Translates to: CVHVSLWFNSHV*VRTCGVWFSVP
Trigger: AGGAACAGAAAACCAAACACCGCATGTTCTCACTCATACGTGGGAATTGAACCACAAGGACACATGGACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583367.1
CDS TCA 72 bp TTTTCTAGATACATCATGCTGGCCTTCTCAATTAGCTaGACGGCCTCTGGTAGTTTCTGCATCTCCTTTGGG +
Preference number: 6 (lower is better)
Translates to: FSRYIMLAFSIS*TASGSFCISFG
Trigger: CCCAAAGGAGATGCAGAAACTACCAGAGGCCGTTCAGCTAATTGAGAAGGCCAGCATGATGTATCTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583367.1
CDS CCA 72 bp TTCTTTATCCAGTCTATCACTGATGGGCATTTGGGTTaGTTCCATGTCTTTGCTATTGTAAATGGTGCTACA +
Preference number: 6 (lower is better)
Translates to: FFIQSITDGHLG*FHVFAIVNGAT
Trigger: TGTAGCACCATTTACAATAGCAAAGACATGGAACCAACCCAAATGCCCATCAGTGATAGACTGGATAAAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583367.1
CDS CAA 72 bp CACATTTTCTTTATCCAGTCTATCACTGATGGGCATTaGGGTTGGTTCCATGTCTTTGCTATTGTAAATGGT +
Preference number: 6 (lower is better)
Translates to: HIFFIQSITDGH*GWFHVFAIVNG
Trigger: ACCATTTACAATAGCAAAGACATGGAACCAACCCAAATGCCCATCAGTGATAGACTGGATAAAGAAAATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583367.1