Pregenerated sensors for NANOG (Homo sapiens)
Ensembl gene IDs: ENSG00000111704Ensembl transcript IDs: ENST00000229307.9, ENST00000541267.5
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTCAGGCAGGAGGATTGCTTGAATCCGGGAAGTCGAGGCTACAGTaGGGTGAAATGGTGCCACTAAGCCCCAGTCTGAGCAGCAGAATA | + |
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Preference number: 1 (lower is better) Translates to: TQAGGLLESGKSRLQ*GEMVPLSPSLSSRI Trigger: TATTCTGCTGCTCAGACTGGGGCTTAGTGGCACCATTTCACCTCACTGTAGCCTCGACTTCCCGGATTCAAGCAATCCTCCTGCCTGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CCA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTATAATCCCACCACTTTaGGAGGCCGAGTCAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGIIPPL*EAESGG Trigger: TCCACCTGACTCGGCCTCCCAAAGTGGTGGGATTAT...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR GCA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTGCTCAGCTATTTCTATaGATTTCTAAGATAGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGAQLFL*ISKIAV Trigger: CACTGCTATCTTAGAAATGCATAGAAATAGCTGAGC...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAGTAATCCTAGCACTTTaGGAGACCGAGGAGGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: LRSLRLARPTWGNPVSPKVILAL*ETEEGG Trigger: TCCACCCTCCTCGGTCTCCCAAAGTGCTAGGATTAC...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR GCA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTCATTACATTTGTAGATaGACATGTACAATGCACGTA | + |
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Preference number: 2 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGHYICR*TCTMHV Trigger: TACGTGCATTGTACATGTGCATCTACAAATGTAATG...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR GCA 90 bp | TTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTAGGGCAGGCACAAGATCGCCCAAGCTGGAGTaGAGTGGTGTGATATTGGCT | + |
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Preference number: 2 (lower is better) Translates to: FRVKGRALRSDTFRAGTRSPKLE*SGVILA Trigger: AGCCAATATCACACCACTGCACTCCAGCTTGGGCGA...TCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR GCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAACCACTCTGATAACCTaGATCATGCTGCTTCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: LRSLRLARPTWGNPVSPKTTLIT*IMLLQS Trigger: ACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAAACACAAAAGTTAGCTaGCATGGTGGTGTGCACCTA | + |
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Preference number: 2 (lower is better) Translates to: LRSLRLARPTWGNPVSPKNTKVS*HGGVHL Trigger: TAGGTGCACACCACCATGCCAGCTAACTTTTGTGTT...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR GCA 90 bp | CCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTTTGAGATGGGAGTTTTaGTCTTGTCGCCCAAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: PASCCFRVKGRALRSDTFLRWEF*SCRPSW Trigger: CCAGCTTGGGCGACAAGAGCAAAACTCCCATCTCAA...AAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CCA 90 bp | CCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTCAAGCTGGAGTGCAGTaGTGTGATATTGGCTCACTA | + |
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Preference number: 2 (lower is better) Translates to: PASCCFRVKGRALRSDTFQAGVQ*CDIGSL Trigger: TAGTGAGCCAATATCACACCACTGCACTCCAGCTTG...AAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CAA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTTGTAATCCTAGCACTTaGGGAGACCGAGGAGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGCNPST*GDRGGW Trigger: CCACCCTCCTCGGTCTCCCAAAGTGCTAGGATTACA...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CAA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTACTCAGGCAGGAGGATaGCTTGAATCCGGGAAGTCG | + |
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Preference number: 3 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGTQAGG*LESGKS Trigger: CGACTTCCCGGATTCAAGCAATCCTCCTGCCTGAGT...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CAA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTCTTGAGCTCAGGAGTTaGAGACTAGCCAGGCCAACA | + |
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Preference number: 3 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGLELRS*RLARPT Trigger: TGTTGGCCTGGCTAGTCTCAAACTCCTGAGCTCAAG...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| 3UTR-3UTR CAA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAAGGCAAGAGAATCACTaGAACCTGGGAGGTGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: LRSLRLARPTWGNPVSPKRQENH*NLGGAG Trigger: ACCTGCACCTCCCAGGTTCAAGTGATTCTCTTGCCT...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTAAGGCTGGTGGATCATaGGGTCAGGAGTTCAAGACC | + |
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Preference number: 4 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGKAGGS*GQEFKT Trigger: GGTCTTGAACTCCTGACCTCATGATCCACCAGCCTT...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTTTGAGATGGGAGTTTTaGTCTTGTCGCCCAAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGLRWEF*SCRPSW Trigger: CCAGCTTGGGCGACAAGAGCAAAACTCCCATCTCAA...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAATCGCCCAGGCTGGAGTaGGGTGGCATTATCTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LRSLRLARPTWGNPVSPKSPRLE*GGIIWG Trigger: ACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTTACCTGCCAAGAGGTTaGAGATTAATACTGGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGYLPRG*RLILGD Trigger: ATCACCCAGTATTAATCTTCAACCTCTTGGCAGGTA...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAACCTCCCGGGTTCAAGTaGTTATCCTGCCTCCGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LRSLRLARPTWGNPVSPKPPGFK*LSCLRL Trigger: AAGGCGGAGGCAGGATAATCACTTGAACCCGGGAGG...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | ACCACTCTGATAACCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGGGCAGGAGAATCACTTaGACTCGGGAGGCGGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: TTLITCIMLLQSEGTCSQGRRIT*TREAEV Trigger: AACCTCCGCCTCCCGAGTTCAAGTGATTCTCCTGCC...CTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAATCGCCCAAGCTGGAGTaGAGTGGTGTGATATTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LRSLRLARPTWGNPVSPKSPKLE*SGVILA Trigger: AGCCAATATCACACCACTGCACTCCAGCTTGGGCGA...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAAGGTGCAGGTTGCAGTaGGTAGAGATTGCATCATTG | + |
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Preference number: 4 (lower is better) Translates to: LRSLRLARPTWGNPVSPKRCRLQ*VEIASL Trigger: CAATGATGCAATCTCTACTCACTGCAACCTGCACCT...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | GCTCTCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGTCAGGTGGATCACCTaGGGTCAGGAGTTCGAGACC | + |
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Preference number: 4 (lower is better) Translates to: ALRSDTFRAGTRWEKDSKVRWIT*GQEFET Trigger: GGTCTCGAACTCCTGACCTCAGGTGATCCACCTGAC...TTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | TTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTAGGGCAGGCACAAGACGCCTTCCAAGTAGCTaGGATTACAGGCGCAAACCA | + |
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Preference number: 4 (lower is better) Translates to: FRVKGRALRSDTFRAGTRRLPSS*DYRRKP Trigger: TGGTTTGCGCCTGTAATCTCAGCTACTTGGAAGGCG...TCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | ACCACTCTGATAACCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGAGGGCAGGCACAAGATaGGAAAAGGACAGTAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: TTLITCIMLLQSEGTCSQRAGTR*EKDSKG Trigger: TCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCT...CTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | TTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTAGGGCAGGCACAAGAATAATCCCACCACTTTaGGAGGCCGAGTCAGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: FRVKGRALRSDTFRAGTRIIPPL*EAESGG Trigger: TCCACCTGACTCGGCCTCCCAAAGTGGTGGGATTAT...TCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | ACCACTCTGATAACCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGCATTGTGCTCCAGCCTaGGTAACAAAAGTGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: TTLITCIMLLQSEGTCSQHCAPA*VTKVKF Trigger: GAACTTCACTTTTGTTACTCAGGCTGGAGCACAATG...CTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | TTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTAGGGCAGGCACAAGAATAGTCTGGGCTATTTaGGAGACTCAGGCAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: FRVKGRALRSDTFRAGTRIVWAI*ETQAGG Trigger: TCCTCCTGCCTGAGTCTCTCAAATAGCCCAGACTAT...TCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | CCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTTTATTTTTGAGACAGTaGCGCTCTGTCGCCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: PASCCFRVKGRALRSDTFLFLRQ*RSVAQA Trigger: AGCCTGGGCGACAGAGCGTCACTGTCTCAAAAATAA...AAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | ACCACTCTGATAACCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGACCACTCTGATAACCTaGATCATGCTGCTTCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: TTLITCIMLLQSEGTCSQTTLIT*IMLLQS Trigger: ACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT...CTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATCTGACGCAGGAGAATTaGTCGAACCCAGGAGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDLTQEN*SNPGGG Trigger: TCCGCCTCCTGGGTTCGAGCAATTCTCCTGCGTCAG...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAGAGATTGCATCATTGTaGTCCAGCCTGAGTAACAAA | + |
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Preference number: 4 (lower is better) Translates to: LRSLRLARPTWGNPVSPKEIASL*SSLSNK Trigger: TTTGTTACTCAGGCTGGAGCACAATGATGCAATCTC...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | GCTCTCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGTAATCCTAGCACTTTaGGAGACCGAGGAGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: ALRSDTFRAGTRWEKDSKVILAL*ETEEGG Trigger: TCCACCCTCCTCGGTCTCCCAAAGTGCTAGGATTAC...TTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAAATTTTTGTTTATTTTTaGGACAGTGACGCTCTGTCG | + |
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Preference number: 4 (lower is better) Translates to: LRSLRLARPTWGNPVSPKIFVYF*DSDALS Trigger: CGACAGAGCGTCACTGTCTCAAAAATAAACAAAAAT...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATGCTGGCATGGTGGTGTaGACCTATAGTCTGGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDAGMVV*TYSLGY Trigger: ATAGCCCAGACTATAGGTGCACACCACCATGCCAGC...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATCTTGGTCTCCCGAAGTaGTGGGATTACAGGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDLGLPK*WDYRCE Trigger: CTCACACCTGTAATCCCAGCACTTCGGGAGACCAAG...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | CCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTAACACAAAAGTTAGCTaGCATGGTGGTGTGCACCTA | + |
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Preference number: 4 (lower is better) Translates to: PASCCFRVKGRALRSDTFNTKVS*HGGVHL Trigger: TAGGTGCACACCACCATGCCAGCTAACTTTTGTGTT...AAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | TTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTAGGGCAGGCACAAGAACACACCAGGTTTTCTaGACGGTAGAATTACTCAGA | + |
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Preference number: 4 (lower is better) Translates to: FRVKGRALRSDTFRAGTRTHQVF*TVELLR Trigger: TCTGAGTAATTCTACCGTTCAGAAAACCTGGTGTGT...TCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR TCA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATGCCTGGTCAATACGGTaGAACCCCATCTCTACTAAA | + |
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Preference number: 4 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDAWSIR*NPISTK Trigger: TTTAGTAGAGATGGGGTTTCACCGTATTGACCAGGC...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | ACCACTCTGATAACCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGCATTACATTTGTAGATaGACATGTACAATGCACGTA | + |
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Preference number: 4 (lower is better) Translates to: TTLITCIMLLQSEGTCSQHYICR*TCTMHV Trigger: TACGTGCATTGTACATGTGCATCTACAAATGTAATG...CTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGGTTATCAGAGTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | CCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTCACTTGGAATTAGACTaGATAGTCTTAGTAACATTG | + |
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Preference number: 4 (lower is better) Translates to: PASCCFRVKGRALRSDTFHLELD*IVLVTL Trigger: CAATGTTACTAAGACTATCCAGTCTAATTCCAAGTG...AAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR GCA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATGCTCAGCTATTTCTATaGATTTCTAAGATAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDAQLFL*ISKIAV Trigger: CACTGCTATCTTAGAAATGCATAGAAATAGCTGAGC...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CCA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATGCAAACCAAGACCTCTaGCAAATTTCTGTATTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDANQDL*QISVFL Trigger: TAAAAATACAGAAATTTGCCAGAGGTCTTGGTTTGC...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CAA 90 bp | TCGCCCAGGCTGGAGTGGGGTGGCATTATCTGGGGTCACTGCAACCTCCCGGGTGTAGAGATTGCATCATaGTGCTCCAGCCTGAGTAAC | + |
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Preference number: 5 (lower is better) Translates to: SPRLEWGGIIWGHCNLPGVEIAS*CSSLSN Trigger: GTTACTCAGGCTGGAGCACAATGATGCAATCTCTAC...ACCCGGGAGGTTGCAGTGACCCCAGATAATGCCACCCCACTCCAGCCTGGGCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CAA 90 bp | CTCAGGAGTTTGAGACTAGCCAGGCCAACATGGGGAAACCCCGTCTCTCCTAAATGTAATCCTAGCACTTaGGGAGACCGAGGAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: LRSLRLARPTWGNPVSPKCNPST*GDRGGW Trigger: CCACCCTCCTCGGTCTCCCAAAGTGCTAGGATTACA...TTTAGGAGAGACGGGGTTTCCCCATGTTGGCCTGGCTAGTCTCAAACTCCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CAA 90 bp | CCTGCATCATGCTGCTTCAGAGTGAAGGGACGTGCTCTCAGATCAGATACATTTCTTGAGCTCAGGAGTTaGAGACTAGCCAGGCCAACA | + |
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Preference number: 5 (lower is better) Translates to: PASCCFRVKGRALRSDTFLELRS*RLARPT Trigger: TGTTGGCCTGGCTAGTCTCAAACTCCTGAGCTCAAG...AAATGTATCTGATCTGAGAGCACGTCCCTTCACTCTGAAGCAGCATGATGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CAA 90 bp | GCTCTCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAACTCAGGCAGGAGGATaGCTTGAATCCGGGAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: ALRSDTFRAGTRWEKDSKTQAGG*LESGKS Trigger: CGACTTCCCGGATTCAAGCAATCCTCCTGCCTGAGT...TTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CAA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATAGGCAAGAGAATCACTaGAACCTGGGAGGTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDRQENH*NLGGAG Trigger: ACCTGCACCTCCCAGGTTCAAGTGATTCTCTTGCCT...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS-3UTR CAA 90 bp | TCAGATCAGATACATTTAGGGCAGGCACAAGATGGGAAAAGGACAGTAAAGGATGTTAAACAGAGAGCCTaGTACTATCCTTTTTGCCTA | + |
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Preference number: 5 (lower is better) Translates to: SDQIHLGQAQDGKRTVKDVKQRA*YYPFCL Trigger: TAGGCAAAAAGGATAGTACAAGGCTCTCTGTTTAAC...ATCCTTTACTGTCCTTTTCCCATCTTGTGCCTGCCCTAAATGTATCTGATCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000229307.9 |
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| CDS CCA 72 bp | CTCCTCCCAGGTAGTCGACTTCTGGCTTTTTCCCTCTaGCTCTTTAGCTTCTTCCCAGGTCTGGTGATTTGT | + |
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Preference number: 6 (lower is better) Translates to: LLPGSRLLAFSL*LFSFFPGLVIC Trigger: ACAAATCACCAGACCTGGGAAGAAGCTAAAGAGCCAGAGGGAAAAAGCCAGAAGTCGACTACCTGGGAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000541267.5 |
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