RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAA40 (Homo sapiens)

Ensembl gene IDs: ENSG00000110583

Ensembl transcript IDs: ENST00000338447.10, ENST00000377793.9, ENST00000534965.5, ENST00000536939.1, ENST00000539656.5, ENST00000542633.1, ENST00000544138.5, ENST00000544194.5, ENST00000545161.1

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGAGGGAAAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTaGAGATCCTATCCCAAGAGCTGTTGTCTTGGAGTGGGATGCTGT +
Preference number: 1 (lower is better)
Translates to: WRERKEEQHRQVGRR*RSYPKSCCLGVGCC
Trigger: ACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTTTCCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
3UTR CCA 90 bp TCTCCAAGCTGTGGAGGGAAAGAAAAGAGGAACAGCACAGACAAGTaGGGCGGAGGTGCAGATCCTATCCCAAGAGCTGTTGTCTTGGAG +
Preference number: 1 (lower is better)
Translates to: SPSCGGKEKRNSTDK*GGGADPIPRAVVLE
Trigger: CTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTTTCCCTCCACAGCTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
3UTR-3UTR GCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCTGCGAGAACCTCCACTaGAGGCCCCAGGAGCCAAAT +
Preference number: 2 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGCENLH*RPQEPN
Trigger: ATTTGGCTCCTGGGGCCTGCAGTGGAGGTTCTCGCA...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR CCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCCCTCCCAGAGTCAGCTaGTCCCAACATGAGCCCACT +
Preference number: 2 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGPPRVS*SQHEPT
Trigger: AGTGGGCTCATGTTGGGACCAGCTGACTCTGGGAGG...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAAGCCCCAGGAGCCAAATaGGGAGGCAGCCACTGTGGA +
Preference number: 2 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQAPGAK*GGSHCG
Trigger: TCCACAGTGGCTGCCTCCTCATTTGGCTCCTGGGGC...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCGGGAGGCCACAGCTCTaGGGACACCCGGTGAACAGT +
Preference number: 2 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVGRPQL*GHPVNS
Trigger: ACTGTTCACCGGGTGTCCTCAGAGCTGTGGCCTCCC...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR-3UTR GCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCCTTTCCGCCGCACCTTaGTTTCCAACTGCACTTCAT +
Preference number: 2 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGLSAAP*FPTALH
Trigger: ATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAG...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR-3UTR CCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGCTGCAGCCTGAGCTATaGCCCGGCTGGGCCACGGCA +
Preference number: 2 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLLQPEL*PGWATA
Trigger: TGCCGTGGCCCAGCCGGGCCATAGCTCAGGCTGCAG...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCATTGCAACGCTTCTCTaGAGAACTGGTAGGCACCAT +
Preference number: 2 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGIATLL*RTGRHH
Trigger: ATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCAAT...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR-3UTR CCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATCTCAGGGCGCAGCCTaGCACGTGCAGGGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKSQGAA*HVQGWG
Trigger: TCCCCAGCCCTGCACGTGCCAGGCTGCGCCCTGAGA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
3UTR-3UTR TCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAATCTGAGGACACCCGGTaGACAGTGAGACCAGGAAAG +
Preference number: 2 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQSEDTR*TVRPGK
Trigger: CTTTCCTGGTCTCACTGTTCACCGGGTGTCCTCAGA...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGGGGAGGCCACAGCTCTaGGGACACCCGGTGAACAGT +
Preference number: 2 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLGRPQL*GHPVNS
Trigger: ACTGTTCACCGGGTGTCCTCAGAGCTGTGGCCTCCC...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAACAGCTGGTCCCAACATaGGCCCACTCCATGAATCCA +
Preference number: 2 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQQLVPT*AHSMNP
Trigger: TGGATTCATGGAGTGGGCTCATGTTGGGACCAGCTG...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR GCA 90 bp AAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAATGTCTTGGAGTGGGATaGTGTGGGGACCCACAACGG +
Preference number: 2 (lower is better)
Translates to: KKRGTAQTSGAEVQILSQCLGVG*CGDPQR
Trigger: CCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACA...TTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000544138.5
3UTR-3UTR CCA 90 bp AAAGCCTCCAGAGGGTCTCCAAGCTGTGGAGGGAAAGAAAAGAGGAACAGCACAGCTGTTGTCTTGGAGTaGGATGCTGTGGGGACCCAC +
Preference number: 2 (lower is better)
Translates to: KASRGSPSCGGKEKRNSTAVVLE*DAVGTH
Trigger: GTGGGTCCCCACAGCATCCCACTCCAAGACAACAGC...TGTGCTGTTCCTCTTTTCTTTCCCTCCACAGCTTGGAGACCCTCTGGAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
3UTR-3UTR TCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGGAGAGGAGGAGCAGCTaGTACCACTTCTCCCCAGGG +
Preference number: 2 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLERRSS*YHFSPG
Trigger: CCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTC...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR GCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTGAGAGGCATTTCTGCTaGAGCCTGAGCTATGGCCCG +
Preference number: 2 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVERHFC*SLSYGP
Trigger: CGGGCCATAGCTCAGGCTGCAGCAGAAATGCCTCTC...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR GCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGAGTTCCCAGTCCCACTaGTGCCCATCAAGAGCAGCG +
Preference number: 2 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLSSQSH*CPSRAA
Trigger: CGCTGCTCTTGATGGGCAGCAGTGGGACTGGGAACT...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATCTGAGGACACCCGGTaGACAGTGAGACCAGGAAAG +
Preference number: 2 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKSEDTR*TVRPGK
Trigger: CTTTCCTGGTCTCACTGTTCACCGGGTGTCCTCAGA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
3UTR-3UTR CCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAACAGTGTGTTCCTCTTTaGGGACCAGCAAACCCCAGA +
Preference number: 2 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKQCVPL*GPANPR
Trigger: TCTGGGGTTTGCTGGTCCCCAAAGAGGAACACACTG...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR TCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGCATGAGCCCACTCCATaGATCCATAAAAACAGCTGG +
Preference number: 2 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLHEPTP*IHKNSW
Trigger: CCAGCTGTTTTTATGGATTCATGGAGTGGGCTCATG...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR CCA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCCGCTCTGCTCATACATaGTTTGCATATTCGTTTTGG +
Preference number: 2 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVRSAHT*FAYSFW
Trigger: CCAAAACGAATATGCAAACCATGTATGAGCAGAGCG...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR-3UTR TCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTATGGAGTTAACTACATaGGGAACGAGAAGTCCTTCT +
Preference number: 2 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVMELTT*GTRSPS
Trigger: AGAAGGACTTCTCGTTCCTCATGTAGTTAACTCCAT...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR GCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATCATCAATTTCAAATTaGAACGCTTCTCTGAAGAAC +
Preference number: 2 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKSSISN*NASLKN
Trigger: GTTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000534965.5
ENST00000544138.5
3UTR-3UTR CAA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCCCAGTGTGTTCCTCTTaGGGGACCAGCAAACCCCAG +
Preference number: 3 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGPVCSS*GTSKPQ
Trigger: CTGGGGTTTGCTGGTCCCCAAAGAGGAACACACTGG...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR CAA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCCCTTTCCGCCGCACCTaGCTTTCCAACTGCACTTCA +
Preference number: 3 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGPFRRT*LSNCTS
Trigger: TGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGG...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR TCA 72 bp AAAAGGCAACAGGGACGGAGCTGTTTTCCCACGCGATaGGGTACCAGGCTCGGTCATCTGTCATTTCCTCCC +
Preference number: 3 (lower is better)
Translates to: KRQQGRSCFPTR*GTRLGHLSFPP
Trigger: GGGAGGAAATGACAGATGACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR CCA 72 bp GGTGCAGATCCTATCCCAAGAGCTGTTGTCTTGGAGTaGGATGCTGTGGGGACCCACAACGGGAGACTAACT +
Preference number: 3 (lower is better)
Translates to: GADPIPRAVVLE*DAVGTHNGRLT
Trigger: AGTTAGTCTCCCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
3UTR-3UTR CAA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCAGAGAGCATTGTGACTaGAAAGTGGCTCTGAGAGTT +
Preference number: 3 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGREHCD*KVALRV
Trigger: AACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCT...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR GCA 72 bp AGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTaGAGATCCTATCCCAAGAGCTGTTGTCTTGGAGTG +
Preference number: 3 (lower is better)
Translates to: RKEEQHRQVGRR*RSYPKSCCLGV
Trigger: CACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
3UTR-3UTR CAA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTCCCAAGAACACCTCATaGTTGGTCCTTTCAGGCTCT +
Preference number: 3 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVPKNTS*LVLSGS
Trigger: AGAGCCTGAAAGGACCAACAATGAGGTGTTCTTGGG...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR CAA 90 bp CTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAAACCGGAAGTGAGCTGCTCATACATGGTTaGCATATTCGTTTTGGTCAG +
Preference number: 3 (lower is better)
Translates to: LHSSTGLHPHTPRQTGSELLIHG*HIRFGQ
Trigger: CTGACCAAAACGAATATGCAAACCATGTATGAGCAG...CTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
3UTR TCA 72 bp AGCACCAAGATAGGAAAATCAATGGAGTTAACTACATaGGGAACGAGAAGTCCTTCTGGGGAAGATGAGGGG +
Preference number: 3 (lower is better)
Translates to: STKIGKSMELTT*GTRSPSGEDEG
Trigger: CCCCTCATCTTCCCCAGAAGGACTTCTCGTTCCTCATGTAGTTAACTCCATTGATTTTCCTATCTTGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR-3UTR CAA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTCATCAATTTCAAATaGCAACGCTTCTCTGAAGAA +
Preference number: 3 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKVINFK*QRFSEE
Trigger: TTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGAC...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000534965.5
ENST00000544138.5
CDS-3UTR CCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCAGGCGGCAACGGCGGTaGCTGCAACAGCGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGRRQRR*LQQRRQ
Trigger: CTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCT...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR CCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCTCTCAGGGCGCAGCCTaGCACGTGCAGGGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGSQGAA*HVQGWG
Trigger: TCCCCAGCCCTGCACGTGCCAGGCTGCGCCCTGAGA...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR TCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCGCCCCAGGAGCCAAATaGGGAGGCAGCCACTGTGGA +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGAPGAK*GGSHCG
Trigger: TCCACAGTGGCTGCCTCCTCATTTGGCTCCTGGGGC...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCGAGAGGAGGAGCAGCTaGTACCACTTCTCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGERRSS*YHFSPG
Trigger: CCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTC...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR CCA 90 bp AAAGCCTCCAGAGGGTCTCCAAGCTGTGGAGGGAAAGAAAAGAGGAACAGCACAAGGCGGCAACGGCGGTaGCTGCAACAGCGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: KASRGSPSCGGKEKRNSTRRQRR*LQQRRQ
Trigger: CTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCT...TGTGCTGTTCCTCTTTTCTTTCCCTCCACAGCTTGGAGACCCTCTGGAGGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCGGTCTCCAAGCCTGTTaGCAGCGTCCACTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGGLQAC*QRPLWH
Trigger: GTGCCAAAGTGGACGCTGCCAACAGGCTTGGAGACC...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
3UTR CAA 72 bp AGTGGGGCGGAGGTGCAGATCCTATCCCAAGAGCTGTaGTCTTGGAGTGGGATGCTGTGGGGACCCACAACG +
Preference number: 4 (lower is better)
Translates to: SGAEVQILSQEL*SWSGMLWGPTT
Trigger: CGTTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTCCGCCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCTCTGAGGACACCCGGTaGACAGTGAGACCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGSEDTR*TVRPGK
Trigger: CTTTCCTGGTCTCACTGTTCACCGGGTGTCCTCAGA...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR CCA 90 bp CTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAAACCGGAAGTGAGTCTCAGGGCGCAGCCTaGCACGTGCAGGGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: LHSSTGLHPHTPRQTGSESQGAA*HVQGWG
Trigger: TCCCCAGCCCTGCACGTGCCAGGCTGCGCCCTGAGA...CTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR CCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTAGGCGGCAACGGCGGTaGCTGCAACAGCGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVARRQRR*LQQRRQ
Trigger: CTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCT...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCAAGCAATCATCCCCATaGCGGGTCCCAAGAACACCT +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGKQSSP*RVPRTP
Trigger: AGGTGTTCTTGGGACCCGCCATGGGGATGATTGCTT...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp CTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAAACCGGAAGTGAGGGGAGGCCACAGCTCTaGGGACACCCGGTGAACAGT +
Preference number: 4 (lower is better)
Translates to: LHSSTGLHPHTPRQTGSEGRPQL*GHPVNS
Trigger: ACTGTTCACCGGGTGTCCTCAGAGCTGTGGCCTCCC...CTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR TCA 90 bp AAAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAGGGAGGCCACAGCTCTaGGGACACCCGGTGAACAGT +
Preference number: 4 (lower is better)
Translates to: KEKRNSTDKWGGGADPIPGRPQL*GHPVNS
Trigger: ACTGTTCACCGGGTGTCCTCAGAGCTGTGGCCTCCC...TGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAACAACTCTGCCTGGGATaGAACCCACCAGGAGCCAGC +
Preference number: 4 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQQLCLG*NPPGAS
Trigger: GCTGGCTCCTGGTGGGTTTCATCCCAGGCAGAGTTG...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp GAGGTGCAGATCCTATCCCAAGAGCTGTTGTCTTGGAGTGGGATGCTGTGGGGATGTCTTGGAGTGGGATaGTGTGGGGACCCACAACGG +
Preference number: 4 (lower is better)
Translates to: EVQILSQELLSWSGMLWGCLGVG*CGDPQR
Trigger: CCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACA...TCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAAGGCGGCAACGGCGGTaGCTGCAACAGCGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKRRQRR*LQQRRQ
Trigger: CTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCT...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CCA 90 bp AGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGTGGAGTGGGATGCTGTaGGGACCCACAACGGGAGAC +
Preference number: 4 (lower is better)
Translates to: RKEEQHRQVGRRCRSYPKWSGML*GPTTGD
Trigger: GTCTCCCGTTGTGGGTCCCCACAGCATCCCACTCCA...CTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTCTGCAGCCTGAGCTATaGCCCGGCTGGGCCACGGCA +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVLQPEL*PGWATA
Trigger: TGCCGTGGCCCAGCCGGGCCATAGCTCAGGCTGCAG...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp CTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAAACCGGAAGTGAGGAGAGGAGGAGCAGCTaGTACCACTTCTCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: LHSSTGLHPHTPRQTGSEERRSS*YHFSPG
Trigger: CCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTC...CTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR TCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTTGGCTGGGGGCTCTCTaGAGAGGGAGGGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAWLGAL*RGRVAV
Trigger: CACAGCCACCCTCCCTCTTCAGAGAGCCCCCAGCCA...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp AAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGAGCAAGTGGGGCGGAGGTaGAGATCCTATCCCAAGAGC +
Preference number: 4 (lower is better)
Translates to: KRGTAQTSGAEVQILSQEQVGRR*RSYPKS
Trigger: GCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTG...CTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR GCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAATGCGAGAACCTCCACTaGAGGCCCCAGGAGCCAAAT +
Preference number: 4 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQCENLH*RPQEPN
Trigger: ATTTGGCTCCTGGGGCCTGCAGTGGAGGTTCTCGCA...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAAGAGAGGCATTTCTGCTaGAGCCTGAGCTATGGCCCG +
Preference number: 4 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQERHFC*SLSYGP
Trigger: CGGGCCATAGCTCAGGCTGCAGCAGAAATGCCTCTC...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp GAAAGCCTCCAGAGGGTCTCCAAGCTGTGGAGGGAAAGAAAAGAGGAACAGCACGTGCGAGGAAGGCTTTaGTGGAAAGGCCCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: ESLQRVSKLWRERKEEQHVRGRL*WKGPGE
Trigger: CTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCAC...GTGCTGTTCCTCTTTTCTTTCCCTCCACAGCTTGGAGACCCTCTGGAGGCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CCA 90 bp AGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGGCTGTTGTCTTGGAGTaGGATGCTGTGGGGACCCAC +
Preference number: 4 (lower is better)
Translates to: RKEEQHRQVGRRCRSYPKAVVLE*DAVGTH
Trigger: GTGGGTCCCCACAGCATCCCACTCCAAGACAACAGC...CTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGGAGGGAGGGTGGCTGTaGGGAGGTGTGCCCTACCCT +
Preference number: 4 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLEGGWL*GGVPYP
Trigger: AGGGTAGGGCACACCTCCCCACAGCCACCCTCCCTC...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAATGTTTTCCCACGCGATaGGGTACCAGGCTCGGTCAT +
Preference number: 4 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQCFPTR*GTRLGH
Trigger: ATGACCGAGCCTGGTACCTCATCGCGTGGGAAAACA...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAAGCTGCAGGATCTGTATaGGGAACTTCCCCAGGCCTT +
Preference number: 4 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQAAGSV*GTSPGL
Trigger: AAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGC...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTGGGAGGCCACAGCTCTaGGGACACCCGGTGAACAGT +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAGRPQL*GHPVNS
Trigger: ACTGTTCACCGGGTGTCCTCAGAGCTGTGGCCTCCC...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR TCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAGGGAGGCCACAGCTCTaGGGACACCCGGTGAACAGT +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRGRPQL*GHPVNS
Trigger: ACTGTTCACCGGGTGTCCTCAGAGCTGTGGCCTCCC...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR GCA 90 bp AACAGGGACGGAGCTGTTTTCCCACGCGATGAGGTACCAGGCTCGGTCATCTGTCTTTCCGCCGCACCTTaGTTTCCAACTGCACTTCAT +
Preference number: 4 (lower is better)
Translates to: NRDGAVFPRDEVPGSVICLSAAP*FPTALH
Trigger: ATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAG...ACAGATGACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR GCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCACCAACAAGAGTGATTaGAGGTCTCAGATAGTGCCT +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGTNKSD*RSQIVP
Trigger: AGGCACTATCTGAGACCTGCAATCACTCTTGTTGGT...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp AAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGAGCCGAGGAAGGCTTTGGTaGAAAGGCCCAGGAGAGTTA +
Preference number: 4 (lower is better)
Translates to: KEEQHRQVGRRCRSYPKSRGRLW*KGPGEL
Trigger: TAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCG...GCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CCA 90 bp AAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGAGAACAGCACAGACAAGTaGGGCGGAGGTGCAGATCCT +
Preference number: 4 (lower is better)
Translates to: KRGTAQTSGAEVQILSQENSTDK*GGGADP
Trigger: AGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTT...CTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp AAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAACTCCTTGGCTTTGCTTaGCTTTCTCCCCATAGCGGC +
Preference number: 4 (lower is better)
Translates to: KKRGTAQTSGAEVQILSQLLGFA*LSPHSG
Trigger: GCCGCTATGGGGAGAAAGTCAAGCAAAGCCAAGGAG...TTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCTGTTTTCCCACGCGATaGGGTACCAGGCTCGGTCAT +
Preference number: 4 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVCFPTR*GTRLGH
Trigger: ATGACCGAGCCTGGTACCTCATCGCGTGGGAAAACA...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR TCA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCTCTGAGGACACCCGGTaGACAGTGAGACCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVSEDTR*TVRPGK
Trigger: CTTTCCTGGTCTCACTGTTCACCGGGTGTCCTCAGA...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR TCA 90 bp AGGGAAAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATTCTGAGGACACCCGGTaGACAGTGAGACCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: RERKEEQHRQVGRRCRSYSEDTR*TVRPGK
Trigger: CTTTCCTGGTCTCACTGTTCACCGGGTGTCCTCAGA...ATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCTGCAGAGACTAGGGTaGGCAGGGTATGGCACCAAG +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALLQRLG*AGYGTK
Trigger: CTTGGTGCCATACCCTGCTCACCCTAGTCTCTGCAG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCTAGTCCCGACCTCCTaGGGAACCCTTCAGGACATG +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALLVPTS*GTLQDM
Trigger: CATGTCCTGAAGGGTTCCTCAGGAGGTCGGGACTAG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTAAGAGCAGCGCAAAGTaGTCAGCAGAGGGGCCAGGC +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVKSSAK*SAEGPG
Trigger: GCCTGGCCCCTCTGCTGAGCACTTTGCGCTGCTCTT...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGTTCCCAGTCCCACTaGTGCCCATCAAGAGCAGCG +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALSSQSH*CPSRAA
Trigger: CGCTGCTCTTGATGGGCAGCAGTGGGACTGGGAACT...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAATCCCTTCTAGCACTCTaGTCTCCTAGGAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQSLLAL*SPRRGG
Trigger: TCCTCCTCTCCTAGGAGACCAGAGTGCTAGAAGGGA...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp AAAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCATTGGCATCACCCTGTTaGCAGCGTCCACTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: KEKRNSTDKWGGGADPIPLASPC*QRPLWH
Trigger: GTGCCAAAGTGGACGCTGCCAACAGGGTGATGCCAA...TGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCTCCTTGGCTTTGCTTaGCTTTCTCCCCATAGCGGC +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALLLGFA*LSPHSG
Trigger: GCCGCTATGGGGAGAAAGTCAAGCAAAGCCAAGGAG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR TCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTAAGCGTGAGTCTCTCTaGAGCCGCCCTCTACACCCA +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAKRESL*SRPLHP
Trigger: TGGGTGTAGAGGGCGGCTTCAGAGAGACTCACGCTT...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCTCTGGCTTTCTTCTATaGATCAAAAGCTCAAGTCAC +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGSGFLL*IKSSSH
Trigger: GTGACTTGAGCTTTTGATTCATAGAAGAAAGCCAGA...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGACAGGAATCTAGGGGCTaGAGAGGTGCGAGAACCTCC +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRQESRG*RGARTS
Trigger: GGAGGTTCTCGCACCTCTGCAGCCCCTAGATTCCTG...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAGGCTGTGGGGAGGTGTaGCCTACCCTTAGAGAGCTA +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRGCGEV*PTLREL
Trigger: TAGCTCTCTAAGGGTAGGGCACACCTCCCCACAGCC...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCAAGGGAGCTGTTAGGTaGTTTTTCCTTGATAAGGAT +
Preference number: 4 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGKGAVR*FFLDKD
Trigger: ATCCTTATCAAGGAAAAAGCACCTAACAGCTCCCTT...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGTCTGCCAGGAGAGACTaGCAGAGTTGGGCAGAGGGT +
Preference number: 4 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLSARRD*QSWAEG
Trigger: ACCCTCTGCCCAACTCTGGCAGTCTCTCCTGGCAGA...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTTCCCAGTCCCACTGCTaGCCATCAAGAGCAGCGCAA +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVSQSHC*PSRAAQ
Trigger: TTGCGCTGCTCTTGATGGGCAGCAGTGGGACTGGGA...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCCTCCCAGAGTCAGCTaGTCCCAACATGAGCCCACT +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAPPRVS*SQHEPT
Trigger: AGTGGGCTCATGTTGGGACCAGCTGACTCTGGGAGG...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAGGTCTCCAAGCCTGTTaGCAGCGTCCACTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRGLQAC*QRPLWH
Trigger: GTGCCAAAGTGGACGCTGCCAACAGGCTTGGAGACC...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000539656.5
CDS-3UTR CCA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCGACATTCAACCCTGTTaGCAGCGTCCACTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVDIQPC*QRPLWH
Trigger: GTGCCAAAGTGGACGCTGCCAACAGGGTTGAATGTC...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR TCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTCCTTGGCTTTGCTTaGCTTTCTCCCCATAGCGGC +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVALLGFA*LSPHSG
Trigger: GCCGCTATGGGGAGAAAGTCAAGCAAAGCCAAGGAG...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR TCA 90 bp AGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAGTTCAGGCTGCAGGATCTGTATaGGGAACTTCCCCAGGCCTT +
Preference number: 4 (lower is better)
Translates to: RKGLRREHCDLKVALRVQAAGSV*GTSPGL
Trigger: AAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGC...CTGAACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR TCA 90 bp AGATCCTATCCCAAGAGCTGTTGTCTTGGAGTGGGATGCTGTGGGGACCCACAAATTGCAACGCTTCTCTaGAGAACTGGTAGGCACCAT +
Preference number: 4 (lower is better)
Translates to: RSYPKSCCLGVGCCGDPQIATLL*RTGRHH
Trigger: ATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCAAT...TTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTCAGCTGGTCCCAACATaGGCCCACTCCATGAATCCA +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVQLVPT*AHSMNP
Trigger: TGGATTCATGGAGTGGGCTCATGTTGGGACCAGCTG...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGGCAACTGTTGGCCACTaGGAGGCATTTCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLATVGH*EAFLLQ
Trigger: CTGCAGCAGAAATGCCTCTCAGTGGCCAACAGTTGC...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCACCGCACTCAGCCATaGCTGCTGTTTCTCAAAACC +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALHRTQP*LLFLKT
Trigger: GGTTTTGAGAAACAGCAGGCATGGCTGAGTGCGGTG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCACCCATTGACCAGTTaGTGCCACGTATCCAGTGAC +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALHPLTS*CHVSSD
Trigger: GTCACTGGATACGTGGCACCAACTGGTCAATGGGTG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAAGGGTGAGCAGGGTATaGCACCAAGCACCCATTGAC +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRRVSRV*HQAPID
Trigger: GTCAATGGGTGCTTGGTGCCATACCCTGCTCACCCT...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTGAACCCTTCAGGACATaGCCTGCAGAGACTAGGGTG +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAEPFRT*PAETRV
Trigger: CACCCTAGTCTCTGCAGGCCATGTCCTGAAGGGTTC...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAAGCCTCCCGAGTAGCTaGGATTACAGGCCACAACCA +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRSLPSS*DYRPQP
Trigger: TGGTTGTGGCCTGTAATCCCAGCTACTCGGGAGGCT...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTACAACCTCCACCTCCTaGGTTCAAGCGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVATTSTS*VQASLL
Trigger: CAGGAGACTCGCTTGAACCCAGGAGGTGGAGGTTGT...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAACGTCAAACCGGAAGTaGGAAAAGGCAACAGGGACG +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRTSNRK*EKATGT
Trigger: CGTCCCTGTTGCCTTTTCTCACTTCCGGTTTGACGT...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR TCA 90 bp CTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAAACCGGAAGTGAGATTGCAACGCTTCTCTaGAGAACTGGTAGGCACCAT +
Preference number: 4 (lower is better)
Translates to: LHSSTGLHPHTPRQTGSEIATLL*RTGRHH
Trigger: ATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCAAT...CTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR CCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATGGCAGCGTCCACTTTaGCACAAACGGCATCCATGG +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKWQRPL*HKRHPW
Trigger: CCATGGATGCCGTTTGTGCCAAAGTGGACGCTGCCA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTCAGTGTGTTCCTCTTTaGGGACCAGCAAACCCCAGA +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVQCVPL*GPANPR
Trigger: TCTGGGGTTTGCTGGTCCCCAAAGAGGAACACACTG...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAATGTCAACTCTGCCTaGGATGAAACCCACCAGGAG +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALNVNSA*DETHQE
Trigger: CTCCTGGTGGGTTTCATCCCAGGCAGAGTTGACATT...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGATTGCAACGCTTCTCTaGAGAACTGGTAGGCACCAT +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALIATLL*RTGRHH
Trigger: ATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCAAT...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR TCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCATGAGCCCACTCCATaGATCCATAAAAACAGCTGG +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALHEPTP*IHKNSW
Trigger: CCAGCTGTTTTTATGGATTCATGGAGTGGGCTCATG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp AAAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCACCAAAACCCACCATTTaGCTAGCTCTGAAGTCACAT +
Preference number: 4 (lower is better)
Translates to: KEKRNSTDKWGGGADPIPPKPTI*LALKSH
Trigger: ATGTGACTTCAGAGCTAGGCAAATGGTGGGTTTTGG...TGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR GCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGCTTTCCGCCGCACCTTaGTTTCCAACTGCACTTCAT +
Preference number: 4 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLLSAAP*FPTALH
Trigger: ATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAG...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTAAGAACGACGAGGGCTaGCAGACAAGAACAAGCAGA +
Preference number: 4 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAKNDEG*QTRTSR
Trigger: TCTGCTTGTTCTTGTCTGCCAGCCCTCGTCGTTCTT...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTATTGCAACGCTTCTCTaGAGAACTGGTAGGCACCAT +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVIATLL*RTGRHH
Trigger: ATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCAAT...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAACCCTTTTGGTCCCCTTaGGTGAGAGGTATCAGGAAT +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKPFWSP*VRGIRN
Trigger: ATTCCTGATACCTCTCACTCAAGGGGACCAAAAGGG...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTGCACTCAGCCATGCCTaGTGTTTCTCAAAACCAAGA +
Preference number: 4 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVALSHA*CFSKPR
Trigger: TCTTGGTTTTGAGAAACAGCAGGCATGGCTGAGTGC...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp AAGAGCTGTTGTCTTGGAGTGGGATGCTGTGGGGACCCACAACGGGAGACTAACCCTTCTTCATCTGTGTaGCGTTTCTATCATATTTCT +
Preference number: 4 (lower is better)
Translates to: KSCCLGVGCCGDPQRETNPSSSV*RFYHIS
Trigger: AGAAATATGATAGAAACGGCACACAGATGAAGAAGG...GTTAGTCTCCCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR TCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATTTGGTCCCCTTGAGTaGGAGGTATCAGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKFGPLE*EVSGIH
Trigger: ATGGATTCCTGATACCTCTCACTCAAGGGGACCAAA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAAGAGACAACGTAGACTaGACTCACCTTACAAGGGAT +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRRDNVD*THLTRD
Trigger: ATCCCTTGTAAGGTGAGTTCAGTCTACGTTGTCTCT...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGACAAGACCAACAAGAGTaGTTGCAGGTCTCAGATAGT +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRQDQQE*LQVSDS
Trigger: ACTATCTGAGACCTGCAATCACTCTTGTTGGTCTTG...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGTTCTATCATATTTCTTaGACACTGGGAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALFYHIS*TLGKPP
Trigger: TGGAGGCTTTCCCAGTGTTCAAGAAATATGATAGAA...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000377793.9
ENST00000539656.5
ENST00000544138.5
CDS-3UTR TCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGATGGAGTTAACTACATaGGGAACGAGAAGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLMELTT*GTRSPS
Trigger: AGAAGGACTTCTCGTTCCTCATGTAGTTAACTCCAT...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR GCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGTGCTCATACATGGTTTaGATATTCGTTTTGGTCAGG +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALCSYMV*IFVLVR
Trigger: CCTGACCAAAACGAATATGCAAACCATGTATGAGCA...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR GCA 90 bp AGATCCTATCCCAAGAGCTGTTGTCTTGGAGTGGGATGCTGTGGGGACCCACAATCATCAATTTCAAATTaGAACGCTTCTCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: RSYPKSCCLGVGCCGDPQSSISN*NASLKN
Trigger: GTTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGA...TTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR GCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAAAAAGCTCAAGTCACTaGCATGAGACCAGGAGGTTA +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKKSSSH*HETRRL
Trigger: TAACCTCCTGGTCTCATGGCAGTGACTTGAGCTTTT...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
46% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CCA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGCGCTCTGCTCATACATaGTTTGCATATTCGTTTTGG +
Preference number: 4 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLRSAHT*FAYSFW
Trigger: CCAAAACGAATATGCAAACCATGTATGAGCAGAGCG...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR TCA 90 bp AGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAGTTCAGTTCTATCATATTTCTTaGACACTGGGAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RKGLRREHCDLKVALRVQFYHIS*TLGKPP
Trigger: TGGAGGCTTTCCCAGTGTTCAAGAAATATGATAGAA...CTGAACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR GCA 90 bp ATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAAACCGGAAGTGAGAAAATGCTCATACATGGTTTaGATATTCGTTTTGGTCAGG +
Preference number: 4 (lower is better)
Translates to: IAVQDFIPTLHVKPEVRKCSYMV*IFVLVR
Trigger: CCTGACCAAAACGAATATGCAAACCATGTATGAGCA...TTTTCTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR CCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAACGCTCTGCTCATACATaGTTTGCATATTCGTTTTGG +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKRSAHT*FAYSFW
Trigger: CCAAAACGAATATGCAAACCATGTATGAGCAGAGCG...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR GCA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGTCATCAATTTCAAATTaGAACGCTTCTCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: PGKRKGLRREHCDLKVALSSISN*NASLKN
Trigger: GTTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGA...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR GCA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGATCATCAATTTCAAATTaGAACGCTTCTCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: GKRKGLRREHCDLKVALRSSISN*NASLKN
Trigger: GTTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGA...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR GCA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAACCTTCTTCATCTGTGTaGCGTTTCTATCATATTTCT +
Preference number: 4 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKPSSSV*RFYHIS
Trigger: AGAAATATGATAGAAACGGCACACAGATGAAGAAGG...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000539656.5
ENST00000544138.5
CDS GCA 90 bp TCTTCTTCACACACTTGCCGGCAGGGAGGCGGCAACGGCGGTGGCTaGAACAGCGGCGGCAGCAGAGCGGACGGCCCTGCAACGCGCATG +
Preference number: 5 (lower is better)
Translates to: SSSHTCRQGGGNGGG*NSGGSRADGPATRM
Trigger: CATGCGCGTTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCTCCCTGCCGGCAAGTGTGTGAAGAAGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS-3UTR CAA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCGAGAGACTGCCAGAGTaGGGCAGAGGGTGGGATGTG +
Preference number: 5 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGERLPE*GRGWDV
Trigger: CACATCCCACCCTCTGCCCAACTCTGGCAGTCTCTC...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS CCA 90 bp CCTTGGCAGCTCATAGACCTAGGTAGGTCCAGGGGCTTTGTCACCTaGCTGGAGTGCCTGGAACATCGCCAGGGTCTCTCTCCCCTACCT +
Preference number: 5 (lower is better)
Translates to: PWQLIDLGRSRGFVT*LECLEHRQGLSPLP
Trigger: AGGTAGGGGAGAGAGACCCTGGCGATGTTCCAGGCACTCCAGCCAGGTGACAAAGCCCCTGGACCTACCTAGGTCTATGAGCTGCCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544194.5
CDS TCA 90 bp AAACACCTGGGCCAACTGCTGGCGCCAACTTCCAACACACAGGTATaGGCTCAGTTCCCTGCACAGCAAGGAGGCAGAGGCGGTGTGGGT +
Preference number: 5 (lower is better)
Translates to: KHLGQLLAPTSNTQV*AQFPAQQGGRGGVG
Trigger: ACCCACACCGCCTCTGCCTCCTTGCTGTGCAGGGAACTGAGCTCATACCTGTGTGTTGGAAGTTGGCGCCAGCAGTTGGCCCAGGTGTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS GCA 90 bp CGGAGGTGCAGATCCTATCCCAAGAGCTGTTGTCTTGGAGTGGGATaGTGTGGGGACCCACAACGGGAGACTAACTTCAGAACCAGGAGC +
Preference number: 5 (lower is better)
Translates to: RRCRSYPKSCCLGVG*CGDPQRETNFRTRS
Trigger: GCTCCTGGTTCTGAAGTTAGTCTCCCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS CCA 90 bp TGGGGCGGAGGTGCAGATCCTATCCCAAGAGCTGTTGTCTTGGAGTaGGATGCTGTGGGGACCCACAACGGGAGACTAACTTCAGAACCA +
Preference number: 5 (lower is better)
Translates to: WGGGADPIPRAVVLE*DAVGTHNGRLTSEP
Trigger: TGGTTCTGAAGTTAGTCTCCCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCTGCACCTCCGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS CCA 90 bp GGACATGAAGAGGCTGTAAGGTCTGGCAGAGGAGCTTGCAGTCCTTaGCAGCTCATAGACCTAGGTAGGTCCAGGGGCTTTGTCACCTGG +
Preference number: 5 (lower is better)
Translates to: GHEEAVRSGRGACSP*QLIDLGRSRGFVTW
Trigger: CCAGGTGACAAAGCCCCTGGACCTACCTAGGTCTATGAGCTGCCAAGGACTGCAAGCTCCTCTGCCAGACCTTACAGCCTCTTCATGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544194.5
CDS-3UTR CAA 90 bp GGAGAGGAGGAGCAGCTGATACCACTTCTCCCCAGGGTTCTGTGCTCTCAGGGCTCCCTTTTGGTCCCCTaGAGTGAGAGGTATCAGGAA +
Preference number: 5 (lower is better)
Translates to: GEEEQLIPLLPRVLCSQGSLLVP*SERYQE
Trigger: TTCCTGATACCTCTCACTCAAGGGGACCAAAAGGGA...GCCCTGAGAGCACAGAACCCTGGGGAGAAGTGGTATCAGCTGCTCCTCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS CCA 90 bp AGGTATGAGCTCAGTTCCCTGCACAGCAAGGAGGCAGAGGCGGTGTaGGTGGGTAGTGTCACAATTCTGCCACAGGGTGGAGACAAAATA +
Preference number: 5 (lower is better)
Translates to: RYELSSLHSKEAEAV*VGSVTILPQGGDKI
Trigger: TATTTTGTCTCCACCCTGTGGCAGAATTGTGACACTACCCACCCACACCGCCTCTGCCTCCTTGCTGTGCAGGGAACTGAGCTCATACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 90 bp CCCACCATTTGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTaGTGGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCTGACAGG +
Preference number: 5 (lower is better)
Translates to: PTICLALKSHVRGRL*WKGPGELSLASPDR
Trigger: CCTGTCAGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 90 bp CCCACCATTTGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTaGTGGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCCTGTTGG +
Preference number: 5 (lower is better)
Translates to: PTICLALKSHVRGRL*WKGPGELSLASPCW
Trigger: CCAACAGGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CAA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCTTGGCAGCGTCCACTTaGGCACAAACGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVLAAST*AQTASM
Trigger: CATGGATGCCGTTTGTGCCAAAGTGGACGCTGCCAA...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR CAA 90 bp AAAGCCTCCAGAGGGTCTCCAAGCTGTGGAGGGAAAGAAAAGAGGAACAGCACATTGGCAGCGTCCACTTaGGCACAAACGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: KASRGSPSCGGKEKRNSTLAAST*AQTASM
Trigger: CATGGATGCCGTTTGTGCCAAAGTGGACGCTGCCAA...TGTGCTGTTCCTCTTTTCTTTCCCTCCACAGCTTGGAGACCCTCTGGAGGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CAA 90 bp GAAAGCCTCCAGAGGGTCTCCAAGCTGTGGAGGGAAAGAAAAGAGGAACAGCACCTATCCCAAGAGCTGTaGTCTTGGAGTGGGATGCTG +
Preference number: 5 (lower is better)
Translates to: ESLQRVSKLWRERKEEQHLSQEL*SWSGML
Trigger: CAGCATCCCACTCCAAGACAACAGCTCTTGGGATAG...GTGCTGTTCCTCTTTTCTTTCCCTCCACAGCTTGGAGACCCTCTGGAGGCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CAA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTGGGTCTCCAAGCCTGTaGGCAGCGTCCACTTTGGCA +
Preference number: 5 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVGSPSL*AASTLA
Trigger: TGCCAAAGTGGACGCTGCCAACAGGCTTGGAGACCC...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CAA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTGGGTCTCCAAGCCTGTaGGCAGCGTCCACTTTGGCA +
Preference number: 5 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAGSPSL*AASTLA
Trigger: TGCCAAAGTGGACGCTGCCAACAGGCTTGGAGACCC...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000539656.5
CDS CCA 90 bp ACCATTTGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTGGTaGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCTGACAGGGCA +
Preference number: 5 (lower is better)
Translates to: TICLALKSHVRGRLW*KGPGELSLASPDRA
Trigger: TGCCCTGTCAGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 90 bp ACCATTTGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTGGTaGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCCTGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: TICLALKSHVRGRLW*KGPGELSLASPCWQ
Trigger: CTGCCAACAGGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS CCA 90 bp AATGGAGACATTCAACCTGAGAAGAGGACAGGACGTGTACGGAATTaGTTACAGCACTCCTGCCAGGGCACTGCTGTTCCTCCCTCAGAA +
Preference number: 5 (lower is better)
Translates to: NGDIQPEKRTGRVRN*LQHSCQGTAVPPSE
Trigger: TTCTGAGGGAGGAACAGCAGTGCCCTGGCAGGAGTGCTGTAACCAATTCCGTACACGTCCTGTCCTCTTCTCAGGTTGAATGTCTCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545161.1
CDS-3UTR CAA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGACCAGTGTGTTCCTCTTaGGGGACCAGCAAACCCCAG +
Preference number: 5 (lower is better)
Translates to: GKRKGLRREHCDLKVALRPVCSS*GTSKPQ
Trigger: CTGGGGTTTGCTGGTCCCCAAAGAGGAACACACTGG...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CAA 90 bp GCTTTCCAACTGCACTTCATAGCAGTACAGGACTTCATCCCCACACTCCACGTCAGACATTCAACCCTGTaGGCAGCGTCCACTTTGGCA +
Preference number: 5 (lower is better)
Translates to: AFQLHFIAVQDFIPTLHVRHSTL*AASTLA
Trigger: TGCCAAAGTGGACGCTGCCAACAGGGTTGAATGTCT...GACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS GCA 90 bp GAGACTAACTTCAGAACCAGGAGCAGCCTCCCAAAACCCACCATTTaGCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTGGTGGAAA +
Preference number: 5 (lower is better)
Translates to: ETNFRTRSSLPKPTI*LALKSHVRGRLWWK
Trigger: TTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGTGGGTTTTGGGAGGCTGCTCCTGGTTCTGAAGTTAGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS-3UTR CAA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGATTGGCAGCGTCCACTTaGGCACAAACGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: GKRKGLRREHCDLKVALRLAAST*AQTASM
Trigger: CATGGATGCCGTTTGTGCCAAAGTGGACGCTGCCAA...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CAA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATGTGCGAGGAAGGCTTaGGTGGAAAGGCCCAGGAGA +
Preference number: 5 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKCARKA*VERPRR
Trigger: TCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CAA 90 bp AAGAAAAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAACCCAAAACCCACCATTaGCCTAGCTCTGAAGTCACA +
Preference number: 5 (lower is better)
Translates to: KKRGTAQTSGAEVQILSQPKTHH*PSSEVT
Trigger: TGTGACTTCAGAGCTAGGCAAATGGTGGGTTTTGGG...TTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTTTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CAA 90 bp AGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAGTTCAGCCTTTCCGCCGCACCTaGCTTTCCAACTGCACTTCA +
Preference number: 5 (lower is better)
Translates to: RKGLRREHCDLKVALRVQPFRRT*LSNCTS
Trigger: TGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGG...CTGAACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534965.5
CDS-3UTR CAA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCCAGGAGAGTTAAGTTaGGCATCACCCTGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: PGKRKGLRREHCDLKVALPGELS*ASPCWQ
Trigger: CTGCCAACAGGGTGATGCCAAACTTAACTCTCCTGG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS CCA 90 bp ATAAGTCAAATTATAAACCAAGCTGAAGTCCCAGGAGGCAGGGACTaGGAAGAAAGGGAGAATCACCCTGTTGGCAGCGTCCACTTTGGC +
Preference number: 5 (lower is better)
Translates to: ISQIINQAEVPGGRD*EERENHPVGSVHFG
Trigger: GCCAAAGTGGACGCTGCCAACAGGGTGATTCTCCCTTTCTTCCCAGTCCCTGCCTCCTGGGACTTCAGCTTGGTTTATAATTTGACTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS-3UTR CAA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATTGGCAGCGTCCACTTaGGCACAAACGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKLAAST*AQTASM
Trigger: CATGGATGCCGTTTGTGCCAAAGTGGACGCTGCCAA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CAA 90 bp AACCTTTATGATACTCCCCACAGCAGAGCTCAGGGATATCCAAAGGGAGCTGTTTTCATCTGTGTGCTGTaGGCCATGAGCTGCAGGATC +
Preference number: 5 (lower is better)
Translates to: NLYDTPHSRAQGYPKGAVFICVL*AMSCRI
Trigger: GATCCTGCAGCTCATGGCCAACAGCACACAGATGAA...AACAGCTCCCTTTGGATATCCCTGAGCTCTGCTGTGGGGAGTATCATAAAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CAA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGATTCATCTGTGTGCTGTaGGCCATGAGCTGCAGGATC +
Preference number: 5 (lower is better)
Translates to: GKRKGLRREHCDLKVALRFICVL*AMSCRI
Trigger: GATCCTGCAGCTCATGGCCAACAGCACACAGATGAA...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR CAA 90 bp GAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGAGCTGTTGTTTTCTATCATATTTCTaGAACACTGGGAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: EQHRQVGRRCRSYPKSCCFLSYF*NTGKAS
Trigger: GGAGGCTTTCCCAGTGTTCAAGAAATATGATAGAAA...ACAACAGCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS-3UTR CAA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAAGAACACCTCATTGTaGGTCCTTTCAGGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: PGKRKGLRREHCDLKVALKNTSL*VLSGSL
Trigger: CAGAGAGCCTGAAAGGACCAACAATGAGGTGTTCTT...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CAA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGCCCAAGAACACCTCATaGTTGGTCCTTTCAGGCTCT +
Preference number: 5 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLPKNTS*LVLSGS
Trigger: AGAGCCTGAAAGGACCAACAATGAGGTGTTCTTGGG...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS CCA 90 bp AACCCAAAGAAGAGGCTACCTGATCTGCTGCACACTGACTTTACCTaGTTACAACTCCAAATGGAAAATCAAGCCCCTGAGCCACATCCT +
Preference number: 5 (lower is better)
Translates to: NPKKRLPDLLHTDFT*LQLQMENQAPEPHP
Trigger: AGGATGTGGCTCAGGGGCTTGATTTTCCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTAGCCTCTTCTTTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS-3UTR CAA 90 bp AAGAGGAACAGCACAGACAAGTGGGGCGGAGGTGCAGATCCTATCCCAAGAGCTGTCATCAATTTCAAATaGCAACGCTTCTCTGAAGAA +
Preference number: 5 (lower is better)
Translates to: KRNSTDKWGGGADPIPRAVINFK*QRFSEE
Trigger: TTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGAC...AGCTCTTGGGATAGGATCTGCACCTCCGCCCCACTTGTCTGTGCTGTTCCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS GCA 90 bp CTGCTCACAGCACAGCTAACCCAAAGAAGAGGCTACCTGATCTGCTaGACACTGACTTTACCTGGTTACAACTCCAAATGGAAAATCAAG +
Preference number: 5 (lower is better)
Translates to: LLTAQLTQRRGYLIC*TLTLPGYNSKWKIK
Trigger: CTTGATTTTCCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTAGCCTCTTCTTTGGGTTAGCTGTGCTGTGAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS GCA 90 bp AACCTGCTCACAGCACAGCTAACCCAAAGAAGAGGCTACCTGATCTaGTGCACACTGACTTTACCTGGTTACAACTCCAAATGGAAAATC +
Preference number: 5 (lower is better)
Translates to: NLLTAQLTQRRGYLI*CTLTLPGYNSKWKI
Trigger: GATTTTCCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTAGCCTCTTCTTTGGGTTAGCTGTGCTGTGAGCAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS-3UTR CAA 90 bp CCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGCTGCTCATACATGGTTaGCATATTCGTTTTGGTCAG +
Preference number: 5 (lower is better)
Translates to: PGKRKGLRREHCDLKVALLLIHG*HIRFGQ
Trigger: CTGACCAAAACGAATATGCAAACCATGTATGAGCAG...CAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR CAA 90 bp GTAGAGGTGAGAGGCAGAGGAGAAAGAACGACGAGGGCTGGCAGACAAGAACAAGTCATCAATTTCAAATaGCAACGCTTCTCTGAAGAA +
Preference number: 5 (lower is better)
Translates to: VEVRGRGERTTRAGRQEQVINFK*QRFSEE
Trigger: TTCTTCAGAGAAGCGTTGCAATTTGAAATTGATGAC...TTGTTCTTGTCTGCCAGCCCTCGTCGTTCTTTCTCCTCTGCCTCTCACCTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CAA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGAAGAGAGCATTGTGACTaGAAAGTGGCTCTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: GKRKGLRREHCDLKVALRREHCD*KVALRV
Trigger: AACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCT...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CAA 90 bp AGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTAGAGAGCATTGTGACTaGAAAGTGGCTCTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: RPGKRKGLRREHCDLKVAREHCD*KVALRV
Trigger: AACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCT...AGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CAA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGACTGCTCATACATGGTTaGCATATTCGTTTTGGTCAG +
Preference number: 5 (lower is better)
Translates to: GKRKGLRREHCDLKVALRLLIHG*HIRFGQ
Trigger: CTGACCAAAACGAATATGCAAACCATGTATGAGCAG...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377793.9
ENST00000534965.5
CDS-3UTR CAA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAAGAGAGCATTGTGACTaGAAAGTGGCTCTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKREHCD*KVALRV
Trigger: AACTCTCAGAGCCACTTTCAAGTCACAATGCTCTCT...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000377793.9
ENST00000534965.5
ENST00000539656.5
ENST00000544138.5
CDS-3UTR CAA 90 bp GTGTCCTTTCAGAGACAGGGACCAGAGACAAATCTCTTCCTAAACATGCTCCTGTTTCTATCATATTTCTaGAACACTGGGAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: VSFQRQGPETNLFLNMLLFLSYF*NTGKAS
Trigger: GGAGGCTTTCCCAGTGTTCAAGAAATATGATAGAAA...CAGGAGCATGTTTAGGAAGAGATTTGTCTCTGGTCCCTGTCTCTGAAAGGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS-3UTR CAA 90 bp GGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAAGTGGCTCTGAGATTTCTATCATATTTCTaGAACACTGGGAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: GKRKGLRREHCDLKVALRFLSYF*NTGKAS
Trigger: GGAGGCTTTCCCAGTGTTCAAGAAATATGATAGAAA...TCTCAGAGCCACTTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000377793.9
ENST00000539656.5
ENST00000544138.5
CDS CCA 90 bp TACCTGATCTGCTGCACACTGACTTTACCTGGTTACAACTCCAAATaGAAAATCAAGCCCCTGAGCCACATCCTTATAAATGAGTGTTTA +
Preference number: 5 (lower is better)
Translates to: YLICCTLTLPGYNSK*KIKPLSHILINECL
Trigger: TAAACACTCATTTATAAGGATGTGGCTCAGGGGCTTGATTTTCCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS-3UTR CAA 90 bp ACAGTGAGACCAGGAAAGAGGAAAGGCCTTAGGAGAGAGCATTGTGACTTGAAATTAGGTGCTTTTTCCTaGATAAGGATTTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: TVRPGKRKGLRREHCDLKLGAFS*IRIWLF
Trigger: GAAAAGCCAAATCCTTATCAAGGAAAAAGCACCTAA...TTTCAAGTCACAATGCTCTCTCCTAAGGCCTTTCCTCTTTCCTGGTCTCACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000377793.9
CDS GCA 72 bp CACACTTGCCGGCAGGGAGGCGGCAACGGCGGTGGCTaGAACAGCGGCGGCAGCAGAGCGGACGGCCCTGCA +
Preference number: 6 (lower is better)
Translates to: HTCRQGGGNGGG*NSGGSRADGPA
Trigger: TGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCTCCCTGCCGGCAAGTGTG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CAA 90 bp CTCCCCATAGCGGCGGCGACAACGCTCAGCTTCTTCTTCACACACTaGCCGGCAGGGAGGCGGCAACGGCGGTGGCTGCAACAGCGGCGG +
Preference number: 6 (lower is better)
Translates to: LPIAAATTLSFFFTH*PAGRRQRRWLQQRR
Trigger: CCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCTCCCTGCCGGCAAGTGTGTGAAGAAGAAGCTGAGCGTTGTCGCCGCCGCTATGGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000338447.10
ENST00000377793.9
ENST00000534965.5
ENST00000536939.1
ENST00000539656.5
ENST00000544138.5
CDS CCA 72 bp GTAGGTCCAGGGGCTTTGTCACCTGGCTGGAGTGCCTaGAACATCGCCAGGGTCTCTCTCCCCTACCTCCCC +
Preference number: 6 (lower is better)
Translates to: VGPGALSPGWSA*NIARVSLPYLP
Trigger: GGGGAGGTAGGGGAGAGAGACCCTGGCGATGTTCCAGGCACTCCAGCCAGGTGACAAAGCCCCTGGACCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544194.5
CDS GCA 72 bp CTAGGTAGGTCCAGGGGCTTTGTCACCTGGCTGGAGTaGCTGGAACATCGCCAGGGTCTCTCTCCCCTACCT +
Preference number: 6 (lower is better)
Translates to: LGRSRGFVTWLE*LEHRQGLSPLP
Trigger: AGGTAGGGGAGAGAGACCCTGGCGATGTTCCAGGCACTCCAGCCAGGTGACAAAGCCCCTGGACCTACCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544194.5
CDS CCA 72 bp CTCAGTTCCCTGCACAGCAAGGAGGCAGAGGCGGTGTaGGTGGGTAGTGTCACAATTCTGCCACAGGGTGGA +
Preference number: 6 (lower is better)
Translates to: LSSLHSKEAEAV*VGSVTILPQGG
Trigger: TCCACCCTGTGGCAGAATTGTGACACTACCCACCCACACCGCCTCTGCCTCCTTGCTGTGCAGGGAACTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 72 bp CTCATAGACCTAGGTAGGTCCAGGGGCTTTGTCACCTaGCTGGAGTGCCTGGAACATCGCCAGGGTCTCTCT +
Preference number: 6 (lower is better)
Translates to: LIDLGRSRGFVT*LECLEHRQGLS
Trigger: AGAGAGACCCTGGCGATGTTCCAGGCACTCCAGCCAGGTGACAAAGCCCCTGGACCTACCTAGGTCTATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544194.5
CDS CCA 72 bp GAGGCTGTAAGGTCTGGCAGAGGAGCTTGCAGTCCTTaGCAGCTCATAGACCTAGGTAGGTCCAGGGGCTTT +
Preference number: 6 (lower is better)
Translates to: EAVRSGRGACSP*QLIDLGRSRGF
Trigger: AAAGCCCCTGGACCTACCTAGGTCTATGAGCTGCCAAGGACTGCAAGCTCCTCTGCCAGACCTTACAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544194.5
CDS GCA 72 bp AGGACAGGACGTGTACGGAATTGGTTACAGCACTCCTaGCAGGGCACTGCTGTTCCTCCCTCAGAATCACAG +
Preference number: 6 (lower is better)
Translates to: RTGRVRNWLQHS*QGTAVPPSESQ
Trigger: CTGTGATTCTGAGGGAGGAACAGCAGTGCCCTGGCAGGAGTGCTGTAACCAATTCCGTACACGTCCTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545161.1
CDS CCA 72 bp GAGGCTGTAAGGTCTGGCAGAGGAGCTTGCAGTCCTTaGCAGCTCATAGACCAGTACAGGACTTCATCCCCA +
Preference number: 6 (lower is better)
Translates to: EAVRSGRGACSP*QLIDQYRTSSP
Trigger: TGGGGATGAAGTCCTGTACTGGTCTATGAGCTGCCAAGGACTGCAAGCTCCTCTGCCAGACCTTACAGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542633.1
CDS CAA 72 bp AGAGGCTGTAAGGTCTGGCAGAGGAGCTTGCAGTCCTaGGCAGCTCATAGACCAGTACAGGACTTCATCCCC +
Preference number: 6 (lower is better)
Translates to: RGCKVWQRSLQS*AAHRPVQDFIP
Trigger: GGGGATGAAGTCCTGTACTGGTCTATGAGCTGCCAAGGACTGCAAGCTCCTCTGCCAGACCTTACAGCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542633.1
CDS CAA 90 bp CATGTGCGAGGAAGGCTTTGGTGGAAAGGCCCAGGAGAGTTAAGTTaGGCATCACCTGACAGGGCAAGAGGAGACCTCATTAGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: HVRGRLWWKGPGELS*ASPDRARGDLISLW
Trigger: CCACAGGCTAATGAGGTCTCCTCTTGCCCTGTCAGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS GCA 72 bp ACTGGAATCCACGTTTTCCCAAACACCTGGGCCAACTaGTGGCGCCAACTTCCAACACACAGGTATGAGCTC +
Preference number: 6 (lower is better)
Translates to: TGIHVFPNTWAN*WRQLPTHRYEL
Trigger: GAGCTCATACCTGTGTGTTGGAAGTTGGCGCCAGCAGTTGGCCCAGGTGTTTGGGAAAACGTGGATTCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 72 bp GGAATCCACGTTTTCCCAAACACCTGGGCCAACTGCTaGCGCCAACTTCCAACACACAGGTATGAGCTCAGT +
Preference number: 6 (lower is better)
Translates to: GIHVFPNTWANC*RQLPTHRYELS
Trigger: ACTGAGCTCATACCTGTGTGTTGGAAGTTGGCGCCAGCAGTTGGCCCAGGTGTTTGGGAAAACGTGGATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 72 bp TCACCTGACAGGGCAAGAGGAGACCTCATTAGCCTGTaGGCATACAACCTGCTCACAGCACAGCTAACCCAA +
Preference number: 6 (lower is better)
Translates to: SPDRARGDLISL*AYNLLTAQLTQ
Trigger: TTGGGTTAGCTGTGCTGTGAGCAGGTTGTATGCCCACAGGCTAATGAGGTCTCCTCTTGCCCTGTCAGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CAA 72 bp CTTCAGAACCAGGAGCAGCCTCCCAAAACCCACCATTaGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCT +
Preference number: 6 (lower is better)
Translates to: LQNQEQPPKTHH*PSSEVTCARKA
Trigger: AGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGTGGGTTTTGGGAGGCTGCTCCTGGTTCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS GCA 72 bp AGATCCTATCCCAAGAGCTGTTGTCTTGGAGTGGGATaGTGTGGGGACCCACAACGGGAGACTAACTTCAGA +
Preference number: 6 (lower is better)
Translates to: RSYPKSCCLGVG*CGDPQRETNFR
Trigger: TCTGAAGTTAGTCTCCCGTTGTGGGTCCCCACAGCATCCCACTCCAAGACAACAGCTCTTGGGATAGGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS CCA 72 bp CTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTGGTaGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCC +
Preference number: 6 (lower is better)
Translates to: LALKSHVRGRLW*KGPGELSLASP
Trigger: GGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS CCA 72 bp ATTCAACCTGAGAAGAGGACAGGACGTGTACGGAATTaGTTACAGCACTCCTGCCAGGGCACTGCTGTTCCT +
Preference number: 6 (lower is better)
Translates to: IQPEKRTGRVRN*LQHSCQGTAVP
Trigger: AGGAACAGCAGTGCCCTGGCAGGAGTGCTGTAACCAATTCCGTACACGTCCTGTCCTCTTCTCAGGTTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545161.1
CDS CAA 90 bp ACCCACCATTTGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTaGGTGGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCCTGTTG +
Preference number: 6 (lower is better)
Translates to: THHLPSSEVTCARKA*VERPRRVKFGITLL
Trigger: CAACAGGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAAATGGTGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544138.5
CDS CCA 72 bp CTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTGGTaGAAAGGCCCAGGAGAGTTAAGTTTGGCATCACCT +
Preference number: 6 (lower is better)
Translates to: LALKSHVRGRLW*KGPGELSLASP
Trigger: AGGTGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 72 bp TGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTTaGTGGAAAGGCCCAGGAGAGTTAAGTTTGGCATCA +
Preference number: 6 (lower is better)
Translates to: CLALKSHVRGRL*WKGPGELSLAS
Trigger: TGATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS CAA 72 bp TTGCCTAGCTCTGAAGTCACATGTGCGAGGAAGGCTTaGGTGGAAAGGCCCAGGAGAGTTAAGTTTGGCATC +
Preference number: 6 (lower is better)
Translates to: LPSSEVTCARKA*VERPRRVKFGI
Trigger: GATGCCAAACTTAACTCTCCTGGGCCTTTCCACCAAAGCCTTCCTCGCACATGTGACTTCAGAGCTAGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338447.10
ENST00000544138.5
CDS GCA 72 bp GCACAGCTAACCCAAAGAAGAGGCTACCTGATCTGCTaGACACTGACTTTACCTGGTTACAACTCCAAATGG +
Preference number: 6 (lower is better)
Translates to: AQLTQRRGYLIC*TLTLPGYNSKW
Trigger: CCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTAGCCTCTTCTTTGGGTTAGCTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS GCA 72 bp ACAGCACAGCTAACCCAAAGAAGAGGCTACCTGATCTaGTGCACACTGACTTTACCTGGTTACAACTCCAAA +
Preference number: 6 (lower is better)
Translates to: TAQLTQRRGYLI*CTLTLPGYNSK
Trigger: TTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTAGCCTCTTCTTTGGGTTAGCTGTGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 72 bp AAGAGGCTACCTGATCTGCTGCACACTGACTTTACCTaGTTACAACTCCAAATGGAAAATCAAGCCCCTGAG +
Preference number: 6 (lower is better)
Translates to: KRLPDLLHTDFT*LQLQMENQAPE
Trigger: CTCAGGGGCTTGATTTTCCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCAGATCAGGTAGCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338447.10
CDS CCA 72 bp TGCTGCACACTGACTTTACCTGGTTACAACTCCAAATaGAAAATCAAGCCCCTGAGCCACATCCTTATAAAT +
Preference number: 6 (lower is better)
Translates to: CCTLTLPGYNSK*KIKPLSHILIN
Trigger: ATTTATAAGGATGTGGCTCAGGGGCTTGATTTTCCATTTGGAGTTGTAACCAGGTAAAGTCAGTGTGCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338447.10