Pregenerated sensors for MYCBP (Homo sapiens)
Ensembl gene IDs: ENSG00000214114Ensembl transcript IDs: ENST00000397572.5, ENST00000495043.5
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCCTCACAACAACCCTGTaGGGTAGGCATCACGGACAT | + |
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Preference number: 2 (lower is better) Translates to: WSILLYSSKSLTEMLKRTLTTTL*GRHHGH Trigger: ATGTCCGTGATGCCTACCTCACAGGGTTGTTGTGAG...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR TCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCATCTATGCAAGGGAATaGTCTTCTGGACCCCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: WSILLYSSKSLTEMLKRTIYARE*SSGPPP Trigger: TGGAGGGGGTCCAGAAGATCATTCCCTTGCATAGAT...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR TCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCACATACATTCTCATTTaGCCCTCACAACAACCCTGT | + |
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Preference number: 2 (lower is better) Translates to: WSILLYSSKSLTEMLKRTTYILI*PSQQPC Trigger: ACAGGGTTGTTGTGAGGGTCAAATGAGAATGTATGT...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCAAGGGAATGATCTTCTaGACCCCCTCCAAAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: WSILLYSSKSLTEMLKRTKGMIF*TPSKNK Trigger: TTTGTTTTTGGAGGGGGTCCAGAAGATCATTCCCTT...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR GCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCATCCAACCCACATGTTaGCTTTCTGTTCAAAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: WSILLYSSKSLTEMLKRTIQPTC*LSVQKG Trigger: TCCTTTTTGAACAGAAAGGCAACATGTGGGTTGGAT...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCTCTGTTCAAAAAGGATaGTACCAAAGACAGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: WSILLYSSKSLTEMLKRTSVQKG*YQRQSQ Trigger: CTGTGACTGTCTTTGGTACCATCCTTTTTGAACAGA...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCCTCTTCCCCTTATACTaGTCCCACCTACTTCACAGG | + |
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Preference number: 3 (lower is better) Translates to: WSILLYSSKSLTEMLKRTLFPLY*SHLLHR Trigger: CCTGTGAAGTAGGTGGGACAAGTATAAGGGGAAGAG...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCTCTTCTCATCTCAGCTaGTGTGTGAACCCAGAGTTG | + |
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Preference number: 3 (lower is better) Translates to: WSILLYSSKSLTEMLKRTSSHLS*CVNPEL Trigger: CAACTCTGGGTTCACACACAAGCTGAGATGAGAAGA...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCGCCCTTTTTATTGGCTaGGTCATAGTCTCCAACAGG | + |
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Preference number: 3 (lower is better) Translates to: WSILLYSSKSLTEMLKRTALFIG*VIVSNR Trigger: CCTGTTGGAGACTATGACCAAGCCAATAAAAAGGGC...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCCACATACATTCTCATTaGACCCTCACAACAACCCTG | + |
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Preference number: 3 (lower is better) Translates to: WSILLYSSKSLTEMLKRTHIHSH*TLTTTL Trigger: CAGGGTTGTTGTGAGGGTCAAATGAGAATGTATGTG...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCTATCCAACCCACATGTaGCCTTTCTGTTCAAAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: WSILLYSSKSLTEMLKRTYPTHM*PFCSKR Trigger: CCTTTTTGAACAGAAAGGCAACATGTGGGTTGGATA...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR GCA 72 bp | GTTTCACCTAAAAGTGTGATTATCCAACCCACATGTTaGCTTTCTGTTCAAAAAGGATGGTACCAAAGACAG | + |
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Preference number: 3 (lower is better) Translates to: VSPKSVIIQPTC*LSVQKGWYQRQ Trigger: CTGTCTTTGGTACCATCCTTTTTGAACAGAAAGGCAACATGTGGGTTGGATAATCACACTTTTAGGTGAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCTGGCAAAGAAGTTATTaGTTCCATGTCACACAAACA | + |
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Preference number: 3 (lower is better) Translates to: WSILLYSSKSLTEMLKRTWQRSY*FHVTQT Trigger: TGTTTGTGTGACATGGAACAAATAACTTCTTTGCCA...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| CDS-3UTR CCA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCAGGCTACCAACACCTTaGTCAGCGTGTCCAGCACCC | + |
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Preference number: 4 (lower is better) Translates to: WSILLYSSKSLTEMLKRTRLPTP*SACPAP Trigger: GGGTGCTGGACACGCTGACCAAGGTGTTGGTAGCCT...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| CDS-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCAAGGCTACCAACACCTaGGTCAGCGTGTCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: WSILLYSSKSLTEMLKRTKATNT*VSVSST Trigger: GGTGCTGGACACGCTGACCAAGGTGTTGGTAGCCTT...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| CDS-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCTCCTTGACAGAAATGTaGAAGAGGACCTCTAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: WSILLYSSKSLTEMLKRTSLTEM*KRTSRG Trigger: GCCTCTAGAGGTCCTCTTCAACATTTCTGTCAAGGA...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| CDS-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCCCATGGAGCATCTTGTaGTATTCATCCAAATCCTTG | + |
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Preference number: 5 (lower is better) Translates to: WSILLYSSKSLTEMLKRTPWSIL*YSSKSL Trigger: CAAGGATTTGGATGAATACAACAAGATGCTCCATGG...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| CDS-3UTR CAA 90 bp | TGGAGCATCTTGTTGTATTCATCCAAATCCTTGACAGAAATGTTGAAGAGGACCTATTCATCCAAATCCTaGACAGAAATGTTGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: WSILLYSSKSLTEMLKRTYSSKS*TEMLKR Trigger: CCTCTTCAACATTTCTGTCAAGGATTTGGATGAATA...GGTCCTCTTCAACATTTCTGTCAAGGATTTGGATGAATACAACAAGATGCTCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397572.5 |
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| CDS CCA 72 bp | TGGCCAGAGCCCGGGAGCCGAGCAGGAAGAAGGCGCTaGGAGTCCGGCAACCCCGCCTCCGCCTCACTACCT | + |
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Preference number: 6 (lower is better) Translates to: WPEPGSRAGRRR*ESGNPASASLP Trigger: AGGTAGTGAGGCGGAGGCGGGGTTGCCGGACTCCCAGCGCCTTCTTCCTGCTCGGCTCCCGGGCTCTGGCCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495043.5 |
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