Pregenerated sensors for MT2A (Homo sapiens)
Ensembl gene IDs: ENSG00000125148Ensembl transcript IDs: ENST00000561491.1, ENST00000562017.1, ENST00000563985.1
Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GGGGGCAGACAGGAGGCGGCAGAGATGAGTACTAGCGACACCGGGAATAAGGATAGGAGGCGGCAGAGATaGGTACTAGCGACACCGGGA | + |
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Preference number: 4 (lower is better) Translates to: GGRQEAAEMSTSDTGNKDRRRQR*VLATPG Trigger: TCCCGGTGTCGCTAGTACTCATCTCTGCCGCCTCCT...ATCCTTATTCCCGGTGTCGCTAGTACTCATCTCTGCCGCCTCCTGTCTGCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000561491.1 |
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| CDS-3UTR CCA 90 bp | GGGGGCAGACAGGAGGCGGCAGAGATGAGTACTAGCGACACCGGGAATAAGGATACAATTTCCGCGCAATaGGGCATCCCCAGACTGCTT | + |
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Preference number: 4 (lower is better) Translates to: GGRQEAAEMSTSDTGNKDTISAQ*GIPRLL Trigger: AAGCAGTCTGGGGATGCCCCATTGCGCGGAAATTGT...ATCCTTATTCCCGGTGTCGCTAGTACTCATCTCTGCCGCCTCCTGTCTGCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000561491.1 |
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| CDS-3UTR TCA 90 bp | GGGGGCAGACAGGAGGCGGCAGAGATGAGTACTAGCGACACCGGGAATAAGGATCCTGATAAGGATCACTaGGGAGGCAACAATTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: GGRQEAAEMSTSDTGNKDPDKDH*GGNNFR Trigger: GCGGAAATTGTTGCCTCCTCAGTGATCCTTATCAGG...ATCCTTATTCCCGGTGTCGCTAGTACTCATCTCTGCCGCCTCCTGTCTGCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000561491.1 |
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| CDS TCA 90 bp | GCGACACCGGGAATAAGGATTCCTGCTCTCCCTGATAAGGATCACTaGGGAGGCAACAATTTCCGCGCAATGGGGCATCCCCAGACTGCT | + |
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Preference number: 5 (lower is better) Translates to: ATPGIRIPALPDKDH*GGNNFRAMGHPQTA Trigger: AGCAGTCTGGGGATGCCCCATTGCGCGGAAATTGTTGCCTCCTCAGTGATCCTTATCAGGGAGAGCAGGAATCCTTATTCCCGGTGTCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561491.1 ENST00000562017.1 |
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| CDS CCA 90 bp | GCTCCGAATAACCTAGAATGGAGAGAAAGATACCCCAAAACTCTTTaGGAAGGAGCAACTCCTGTCCTGAAATTGAGTGACCAGAGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: APNNLEWRERYPKTL*EGATPVLKLSDQRK Trigger: CTTTCTCTGGTCACTCAATTTCAGGACAGGAGTTGCTCCTTCCCAAAGAGTTTTGGGGTATCTTTCTCTCCATTCTAGGTTATTCGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000562017.1 ENST00000563985.1 |
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| CDS CAA 90 bp | GAGCCCGGGGCCGAGTTCCTCAGTCCACAACCGATTCCTGGGAACTaGAGCAAGCCATTAACTCAGATCTCCTTAACGGTAAAAAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: EPGAEFLSPQPIPGN*SKPLTQISLTVKRG Trigger: CCCCCTTTTTACCGTTAAGGAGATCTGAGTTAATGGCTTGCTCAAGTTCCCAGGAATCGGTTGTGGACTGAGGAACTCGGCCCCGGGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000562017.1 ENST00000563985.1 |
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| CDS TCA 72 bp | GGAATAAGGATTCCTGCTCTCCCTGATAAGGATCACTaGGGAGGCAACAATTTCCGCGCAATGGGGCATCCC | + |
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Preference number: 6 (lower is better) Translates to: GIRIPALPDKDH*GGNNFRAMGHP Trigger: GGGATGCCCCATTGCGCGGAAATTGTTGCCTCCTCAGTGATCCTTATCAGGGAGAGCAGGAATCCTTATTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561491.1 ENST00000562017.1 |
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| CDS CAA 72 bp | GCCGAGTTCCTCAGTCCACAACCGATTCCTGGGAACTaGAGCAAGCCATTAACTCAGATCTCCTTAACGGTA | + |
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Preference number: 6 (lower is better) Translates to: AEFLSPQPIPGN*SKPLTQISLTV Trigger: TACCGTTAAGGAGATCTGAGTTAATGGCTTGCTCAAGTTCCCAGGAATCGGTTGTGGACTGAGGAACTCGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000562017.1 ENST00000563985.1 |
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