Pregenerated sensors for MT1F (Homo sapiens)

Ensembl gene IDs: ENSG00000198417

Ensembl transcript IDs: ENST00000564295.1, ENST00000567672.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCATCAGCACACTCAACATCCTTCATCTGCACCCAGTCCTTCTCATaGCTCTGCGTTGCCGAGATGACGCTTTCCTCCACATCTCCAGTC	+
Preference number: 5 (lower is better) Translates to: ASAHSTSFICTQSFS*LCVAEMTLSSTSPV Trigger: GACTGGAGATGTGGAGGAAAGCGTCATCTCGGCAACGCAGAGTCATGAGAAGGACTGGGTGCAGATGAAGGATGTTGAGTGTGCTGATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567672.1
CDS CAA 90 bp	ACACCGCGGACCGTCCCTTTGGAGTCCGCTCAAGCGGGAGGCGCTTaGTGCCTGGGTGAGCGGCTTCCCTGCCCTCCTGCCCGCCCTTCC	+
Preference number: 6 (lower is better) Translates to: TPRTVPLESAQAGGA*CLGERLPCPPARPS Trigger: GGAAGGGCGGGCAGGAGGGCAGGGAAGCCGCTCACCCAGGCACAAAGCGCCTCCCGCTTGAGCGGACTCCAAAGGGACGGTCCGCGGTGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564295.1
CDS GCA 72 bp	GTCCCTTTGGAGTCCGCTCAAGCGGGAGGCGCTTTGTaGCTGGGTGAGCGGCTTCCCTGCCCTCCTGCCCGC	+
Preference number: 6 (lower is better) Translates to: VPLESAQAGGAL*LGERLPCPPAR Trigger: GCGGGCAGGAGGGCAGGGAAGCCGCTCACCCAGGCACAAAGCGCCTCCCGCTTGAGCGGACTCCAAAGGGAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564295.1
CDS CCA 72 bp	CTTTGGAGTCCGCTCAAGCGGGAGGCGCTTTGTGCCTaGGTGAGCGGCTTCCCTGCCCTCCTGCCCGCCCTT	+
Preference number: 6 (lower is better) Translates to: LWSPLKREALCA*VSGFPALLPAL Trigger: AAGGGCGGGCAGGAGGGCAGGGAAGCCGCTCACCCAGGCACAAAGCGCCTCCCGCTTGAGCGGACTCCAAAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564295.1
CDS CAA 72 bp	ACCGTCCCTTTGGAGTCCGCTCAAGCGGGAGGCGCTTaGTGCCTGGGTGAGCGGCTTCCCTGCCCTCCTGCC	+
Preference number: 6 (lower is better) Translates to: TVPLESAQAGGA*CLGERLPCPPA Trigger: GGCAGGAGGGCAGGGAAGCCGCTCACCCAGGCACAAAGCGCCTCCCGCTTGAGCGGACTCCAAAGGGACGGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564295.1
CDS GCA 72 bp	CTTCATCTGCACCCAGTCCTTCTCATGACTCTGCGTTaGCGAGATGACGCTTTCCTCCACATCTCCAGTCAC	+
Preference number: 6 (lower is better) Translates to: LHLHPVLLMTLR*RDDAFLHISSH Trigger: GTGACTGGAGATGTGGAGGAAAGCGTCATCTCGGCAACGCAGAGTCATGAGAAGGACTGGGTGCAGATGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567672.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu