Pregenerated sensors for MSX2 (Homo sapiens)
Ensembl gene IDs: ENSG00000120149Ensembl transcript IDs: ENST00000239243.7, ENST00000507785.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGTCCAGGGCGAGGAGCTaGGATGTGGTAAAGGGCGTG | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERSRARS*DVVKGV Trigger: CACGCCCTTTACCACATCCCAGCTCCTCGCCCTGGA...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507785.2 |
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| 3UTR-3UTR GCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGGTTTCTGACGGAACTTaGGCTCCAGGGCGAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERVSDGT*APGRGA Trigger: AGCTCCTCGCCCTGGAGCGCAAGTTCCGTCAGAAAC...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507785.2 |
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| 3UTR-3UTR CCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGGCAGAGCAGGAGTACTaGCTGGTACTGCCTTCGTGG | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERAEQEY*LVLPSW Trigger: CCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGC...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| 3UTR-3UTR CCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGTTCAGCTATGTCGTGTaGCCCTGTCAGCCTAGCCGC | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERFSYVV*PCQPSR Trigger: GCGGCTAGGCTGACAGGGCCACACGACATAGCTGAA...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| 3UTR-3UTR GCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGTCCAGTTCTGCCTCCTaGAGTCTTTTCGCCTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERSSSAS*SLFALA Trigger: GGCCAAGGCGAAAAGACTGCAGGAGGCAGAACTGGA...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507785.2 |
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| 3UTR-3UTR CCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGAGCAGGAGTACTGGCTaGTACTGCCTTCGTGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERSRSTG*YCLRGE Trigger: CTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCT...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| 3UTR-3UTR GCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGGAAAACAGGGCTTGGTaGCTCCGCCTACAGAACAAA | + |
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Preference number: 2 (lower is better) Translates to: ARRVSRAGVLAGTAFVERENRAW*LRLQNK Trigger: TTTGTTCTGTAGGCGGAGGCACCAAGCCCTGTTTTC...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| CDS-3UTR GCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGTGGTCCGGCCACCACTaGTGGGCCCTCCTCGTCGGG | + |
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Preference number: 4 (lower is better) Translates to: ARRVSRAGVLAGTAFVERWSGHH*WALLVG Trigger: CCCGACGAGGAGGGCCCAGCAGTGGTGGCCGGACCA...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| CDS-3UTR CCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGCGGCGCGCACTCACTTaGCGGCGGCGAATATCGGCC | + |
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Preference number: 4 (lower is better) Translates to: ARRVSRAGVLAGTAFVERRRALT*RRRISA Trigger: GGCCGATATTCGCCGCCGCCAAGTGAGTGCGCGCCG...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507785.2 |
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| CDS-3UTR GCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGATGTCCTCCTACTCCTaGCCCGGCGCGCACTCACTT | + |
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Preference number: 4 (lower is better) Translates to: ARRVSRAGVLAGTAFVERMSSYS*PGAHSL Trigger: AAGTGAGTGCGCGCCGGGGCAGGAGTAGGAGGACAT...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507785.2 |
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| CDS-3UTR CCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGAGGGCTCATATGTCTTaGCGGCGGCGAATATCGGCC | + |
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Preference number: 4 (lower is better) Translates to: ARRVSRAGVLAGTAFVERRAHMS*RRRISA Trigger: GGCCGATATTCGCCGCCGCCAAGACATATGAGCCCT...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239243.7 |
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| CDS-3UTR TCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGCGCCGCTCCATCTTCTaGATTTTCCGACTTGACCGA | + |
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Preference number: 4 (lower is better) Translates to: ARRVSRAGVLAGTAFVERRRSIF*IFRLDR Trigger: TCGGTCAAGTCGGAAAATTCAGAAGATGGAGCGGCG...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| CDS-3UTR GCA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGGCGAAAACAAGTCATTaGCTTTGGACGGAGAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: ARRVSRAGVLAGTAFVERAKTSH*LWTEKP Trigger: TGGCTTCTCCGTCCAAAGGCAATGACTTGTTTTCGC...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| CDS-3UTR CAA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGCCGGCGCGCACTCACTaGGCGGCGGCGAATATCGGC | + |
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Preference number: 5 (lower is better) Translates to: ARRVSRAGVLAGTAFVERPARTH*AAANIG Trigger: GCCGATATTCGCCGCCGCCAAGTGAGTGCGCGCCGG...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507785.2 |
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| CDS-3UTR CAA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGGGCGAAAACAAGTCATaGCCTTTGGACGGAGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: ARRVSRAGVLAGTAFVERGENKS*PLDGEA Trigger: GGCTTCTCCGTCCAAAGGCAATGACTTGTTTTCGCC...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| CDS-3UTR CAA 90 bp | GCACGCAGGGTTAGCAGAGCAGGAGTACTGGCTGGTACTGCCTTCGTGGAGAGGAACAAGTCATTGCCTTaGGACGGAGAAGCCATGACT | + |
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Preference number: 5 (lower is better) Translates to: ARRVSRAGVLAGTAFVERNKSLP*DGEAMT Trigger: AGTCATGGCTTCTCCGTCCAAAGGCAATGACTTGTT...CCTCTCCACGAAGGCAGTACCAGCCAGTACTCCTGCTCTGCTAACCCTGCGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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| CDS CAA 72 bp | ACTGCTGGGCCCTCCTCGTCGGGCGAAAACAAGTCATaGCCTTTGGACGGAGAAGCCATGACTTCTCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: TAGPSSSGENKS*PLDGEAMTSLP Trigger: GGGCAGAGAAGTCATGGCTTCTCCGTCCAAAGGCAATGACTTGTTTTCGCCCGACGAGGAGGGCCCAGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000239243.7 ENST00000507785.2 |
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