RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MSMP (Homo sapiens)

Ensembl gene IDs: ENSG00000215183

Ensembl transcript IDs: ENST00000414286.1, ENST00000436428.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TGTAGACTCCTGGGTGCTGGAGGAGTAGAGACATCACCAAGCAGATaGTCCCCCAGCCTCCTAGGATCCCCTTGGCCTGTCCAGCCCAGA +
Preference number: 5 (lower is better)
Translates to: CRLLGAGGVETSPSR*SPSLLGSPWPVQPR
Trigger: TCTGGGCTGGACAGGCCAAGGGGATCCTAGGAGGCTGGGGGATCATCTGCTTGGTGATGTCTCTACTCCTCCAGCACCCAGGAGTCTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436428.3
CDS GCA 90 bp TCGATGGGATGCTGGGACGTGTCACAGCAGCCCACGCCAACAGGATaGAGACAGGTGCAATGGAAACAGTCCTTGCGGAGCCAAGACTCA +
Preference number: 5 (lower is better)
Translates to: SMGCWDVSQQPTPTG*RQVQWKQSLRSQDS
Trigger: TGAGTCTTGGCTCCGCAAGGACTGTTTCCATTGCACCTGTCTGCATCCTGTTGGCGTGGGCTGCTGTGACACGTCCCAGCATCCCATCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000414286.1
ENST00000436428.3
CDS CCA 90 bp GACGTGTCACAGCAGCCCACGCCAACAGGATGCAGACAGGTGCAATaGAAACAGTCCTTGCGGAGCCAAGACTCACCCAGGGTAAAATAT +
Preference number: 5 (lower is better)
Translates to: DVSQQPTPTGCRQVQ*KQSLRSQDSPRVKY
Trigger: ATATTTTACCCTGGGTGAGTCTTGGCTCCGCAAGGACTGTTTCCATTGCACCTGTCTGCATCCTGTTGGCGTGGGCTGCTGTGACACGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000414286.1
ENST00000436428.3
CDS CCA 72 bp CCTCCTGACGTACCTCACACCCAGCCGGGAAGTCGATaGGATGCTGGGACGTGTCACAGCAGCCCACGCCAA +
Preference number: 6 (lower is better)
Translates to: PPDVPHTQPGSR*DAGTCHSSPRQ
Trigger: TTGGCGTGGGCTGCTGTGACACGTCCCAGCATCCCATCGACTTCCCGGCTGGGTGTGAGGTACGTCAGGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000414286.1
ENST00000436428.3
CDS CAA 72 bp CCTTGGCCTGTCCAGCCCAGAGCATCCTTAGGGCCATaGCTGCTGCACAGCCCTCTCAGACCCTTCTTGGCC +
Preference number: 6 (lower is better)
Translates to: PWPVQPRASLGP*LLHSPLRPFLA
Trigger: GGCCAAGAAGGGTCTGAGAGGGCTGTGCAGCAGCAATGGCCCTAAGGATGCTCTGGGCTGGACAGGCCAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436428.3
CDS CAA 90 bp CTAGGATCCCCTTGGCCTGTCCAGCCCAGAGCATCCTTAGGGCCATaGCTGCTGCACAGCCCTCTCAGACCCTTCTTGGCCTCTGCTCAG +
Preference number: 6 (lower is better)
Translates to: LGSPWPVQPRASLGP*LLHSPLRPFLASAQ
Trigger: CTGAGCAGAGGCCAAGAAGGGTCTGAGAGGGCTGTGCAGCAGCAATGGCCCTAAGGATGCTCTGGGCTGGACAGGCCAAGGGGATCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436428.3
CDS TCA 72 bp CTGGGTGCTGGAGGAGTAGAGACATCACCAAGCAGATaGTCCCCCAGCCTCCTAGGATCCCCTTGGCCTGTC +
Preference number: 6 (lower is better)
Translates to: LGAGGVETSPSR*SPSLLGSPWPV
Trigger: GACAGGCCAAGGGGATCCTAGGAGGCTGGGGGATCATCTGCTTGGTGATGTCTCTACTCCTCCAGCACCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436428.3
CDS GCA 72 bp TGCTGGGACGTGTCACAGCAGCCCACGCCAACAGGATaGAGACAGGTGCAATGGAAACAGTCCTTGCGGAGC +
Preference number: 6 (lower is better)
Translates to: CWDVSQQPTPTG*RQVQWKQSLRS
Trigger: GCTCCGCAAGGACTGTTTCCATTGCACCTGTCTGCATCCTGTTGGCGTGGGCTGCTGTGACACGTCCCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000414286.1
ENST00000436428.3
CDS CAA 72 bp CCAACAGGATGCAGACAGGTGCAATGGAAACAGTCCTaGCGGAGCCAAGACTCACCCAGGGTAAAATATTTC +
Preference number: 6 (lower is better)
Translates to: PTGCRQVQWKQS*RSQDSPRVKYF
Trigger: GAAATATTTTACCCTGGGTGAGTCTTGGCTCCGCAAGGACTGTTTCCATTGCACCTGTCTGCATCCTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000414286.1
ENST00000436428.3