Pregenerated sensors for MSMO1 (Homo sapiens)
Ensembl gene IDs: ENSG00000052802Ensembl transcript IDs: ENST00000261507.11, ENST00000393766.6, ENST00000505270.1, ENST00000507013.5
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATAGTAGCCAGAAGACATaGTTATTTCTGCTCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: KTQCELQAYGFTGRKAIDSSQKT*LFLLSR Trigger: TCTGGAGAGCAGAAATAAGCATGTCTTCTGGCTACT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| 3UTR-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATTATCCAAAACCTTCTTaGAAGCTTAGGAACATGGTC | + |
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Preference number: 2 (lower is better) Translates to: KTQCELQAYGFTGRKAIDYPKPS*KLRNMV Trigger: GACCATGTTCCTAAGCTTCCAAGAAGGTTTTGGATA...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| 3UTR-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATGGAAGCTTAGGAACATaGTCTTTTAAAACTTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: KTQCELQAYGFTGRKAIDGSLGT*SFKTSS Trigger: TGAGGAAGTTTTAAAAGACCATGTTCCTAAGCTTCC...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATCGGCCGCGAGATGACTaGCGGCCACCGACACCGAGG | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDRPRDD*RPPTPR Trigger: CCTCGGTGTCGGTGGCCGGCAGTCATCTCGCGGCCG...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATTCCAACCTCGGAACCTaGCTCGCCTGGCTTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDSNLGT*LAWLGG Trigger: ACCCCCAAGCCAGGCGAGGCAGGTTCCGAGGTTGGA...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000261507.11 |
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| CDS-3UTR TCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATGAGGTTGCAGTGAGCTaGGACTGTGCCACCACACTC | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDEVAVS*DCATTL Trigger: GAGTGTGGTGGCACAGTCTCAGCTCACTGCAACCTC...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR TCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATGGCAGAAGAATTGCTTaGACTGGGAGGCAGAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDGRRIA*TGRQRL Trigger: CAACCTCTGCCTCCCAGTTCAAGCAATTCTTCTGCC...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATGTTTTCCCATGTCTCTaGCTTATCCTGAACGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDVFPCL*LILNGR Trigger: GCGGCCGTTCAGGATAAGCCAGAGACATGGGAAAAC...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000393766.6 |
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| CDS-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATCTGAGGCAGAAGAATTaGTTGAACTGGGAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDLRQKN*LNWEAE Trigger: CTCTGCCTCCCAGTTCAAGCAATTCTTCTGCCTCAG...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR TCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATGCCAAGTATCTTCAATaGCTGCACAACCAAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDAKYLQ*LHNQSI Trigger: GATGCTTTGGTTGTGCAGTCATTGAAGATACTTGGC...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATAGCTCTAGATTAGAATaGAAGTTCTTGGTGCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDSSRLE*KFLVPA Trigger: AGCCGGCACCAAGAACTTCCATTCTAATCTAGAGCT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATACATCCATTCAGAAATaGCAGTACTGCACTGCAATC | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDTSIQK*QYCTAI Trigger: GATTGCAGTGCAGTACTGGCATTTCTGAATGGATGT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATTTGAAACACTTCCATTaGTTTTCCCATGTCTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDLKHFH*FSHVSG Trigger: GCCAGAGACATGGGAAAACCAATGGAAGTGTTTCAA...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATAGCTTCCATTCCAAATaGAGCCTGAAACTCATGATG | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDSFHSK*SLKLMM Trigger: CATCATGAGTTTCAGGCTCCATTTGGAATGGAAGCT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR TCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATTTTAAAGACCCAATGTaGACTTCAGGCCTATGGTTT | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDFKDPM*TSGLWF Trigger: AAACCATAGGCCTGAAGTTCACATTGGGTCTTTAAA...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATAGTATCTTCAATGACTaGACAACCAAAGCATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDSIFND*TTKASC Trigger: GCAAGATGCTTTGGTTGTGCAGTCATTGAAGATACT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATTTTCTAATAAACGAATaGTCACCCATGCCCAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDFLINE*SPMPKE Trigger: TTCTTTGGGCATGGGTGACCATTCGTTTATTAGAAA...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR GCA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATACAACCAAAGCATCTTaGCAAAAGAAAATACCATCT | + |
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Preference number: 4 (lower is better) Translates to: KTQCELQAYGFTGRKAIDTTKAS*QKKIPS Trigger: AGATGGTATTTTCTTTTGGCAAGATGCTTTGGTTGT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS GCA 90 bp | TTCCGCCCCGTCTCGGGTACCACTGCCAGCGTCCCGCCCAGCGCGTaGATCCGCACCCAGAACCCGCTCCCCTCGATCTCACGGAGCACC | + |
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Preference number: 5 (lower is better) Translates to: FRPVSGTTASVPPSA*IRTQNPLPSISRST Trigger: GGTGCTCCGTGAGATCGAGGGGAGCGGGTTCTGGGTGCGGATGCACGCGCTGGGCGGGACGCTGGCAGTGGTACCCGAGACGGGGCGGAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS GCA 90 bp | GCCCACCTTCACTCCAGTCTCCTTCCGCCCCGTCTCGGGTACCACTaGCAGCGTCCCGCCCAGCGCGTGCATCCGCACCCAGAACCCGCT | + |
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Preference number: 5 (lower is better) Translates to: AHLHSSLLPPRLGYH*QRPAQRVHPHPEPA Trigger: AGCGGGTTCTGGGTGCGGATGCACGCGCTGGGCGGGACGCTGGCAGTGGTACCCGAGACGGGGCGGAAGGAGACTGGAGTGAAGGTGGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS TCA 90 bp | ACGGAGCACCGGGTGGGAGCCCGCCTGCTCCCCCTTCCTCGCTCATaGGCCACTCCTCCAACCCCCTCACCTGAACGGCCGCGAGATGAC | + |
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Preference number: 5 (lower is better) Translates to: TEHRVGARLLPLPRS*ATPPTPSPERPRDD Trigger: GTCATCTCGCGGCCGTTCAGGTGAGGGGGTTGGAGGAGTGGCTCATGAGCGAGGAAGGGGGAGCAGGCGGGCTCCCACCCGGTGCTCCGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS CCA 90 bp | ATCCGCACCCAGAACCCGCTCCCCTCGATCTCACGGAGCACCGGGTaGGAGCCCGCCTGCTCCCCCTTCCTCGCTCATGAGCCACTCCTC | + |
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Preference number: 5 (lower is better) Translates to: IRTQNPLPSISRSTG*EPACSPFLAHEPLL Trigger: GAGGAGTGGCTCATGAGCGAGGAAGGGGGAGCAGGCGGGCTCCCACCCGGTGCTCCGTGAGATCGAGGGGAGCGGGTTCTGGGTGCGGAT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS-3UTR CAA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATGCTGAGGCAGAAGAATaGCTTGAACTGGGAGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: KTQCELQAYGFTGRKAIDAEAEE*LELGGR Trigger: TCTGCCTCCCAGTTCAAGCAATTCTTCTGCCTCAGC...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CAA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATAGGCAGAAGAATTGCTaGAACTGGGAGGCAGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: KTQCELQAYGFTGRKAIDRQKNC*NWEAEV Trigger: AACCTCTGCCTCCCAGTTCAAGCAATTCTTCTGCCT...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS-3UTR CAA 90 bp | AAGACCCAATGTGAACTTCAGGCCTATGGTTTTACTGGGAGAAAAGCCATAGATTTTGAAACACTTCCATaGGTTTTCCCATGTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: KTQCELQAYGFTGRKAIDFETLP*VFPCLW Trigger: CCAGAGACATGGGAAAACCAATGGAAGTGTTTCAAA...ATCTATGGCTTTTCTCCCAGTAAAACCATAGGCCTGAAGTTCACATTGGGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000261507.11 ENST00000393766.6 |
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| CDS GCA 72 bp | CACTCCAGTCTCCTTCCGCCCCGTCTCGGGTACCACTaGCAGCGTCCCGCCCAGCGCGTGCATCCGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: HSSLLPPRLGYH*QRPAQRVHPHP Trigger: TGGGTGCGGATGCACGCGCTGGGCGGGACGCTGGCAGTGGTACCCGAGACGGGGCGGAAGGAGACTGGAGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS GCA 72 bp | GTCTCGGGTACCACTGCCAGCGTCCCGCCCAGCGCGTaGATCCGCACCCAGAACCCGCTCCCCTCGATCTCA | + |
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Preference number: 6 (lower is better) Translates to: VSGTTASVPPSA*IRTQNPLPSIS Trigger: TGAGATCGAGGGGAGCGGGTTCTGGGTGCGGATGCACGCGCTGGGCGGGACGCTGGCAGTGGTACCCGAGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS GCA 72 bp | CCTCCAACCCCCTCACCTGAACGGCCGCGAGATGACTaGCGGCCACCGACACCGAGGACTCGCCAGGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: PPTPSPERPRDD*RPPTPRTRQVF Trigger: GAACACCTGGCGAGTCCTCGGTGTCGGTGGCCGGCAGTCATCTCGCGGCCGTTCAGGTGAGGGGGTTGGAGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS GCA 72 bp | CCCTCGATCTCACGGAGCACCGGGTGGGAGCCCGCCTaGTCCCCCTTCCTCGCTCATGAGCCACTCCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: PSISRSTGWEPA*SPFLAHEPLLQ Trigger: TTGGAGGAGTGGCTCATGAGCGAGGAAGGGGGAGCAGGCGGGCTCCCACCCGGTGCTCCGTGAGATCGAGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000507013.5 |
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| CDS GCA 72 bp | ATGTCTCTGGCTTATCCTGAACGGCCGCGAGATGACTaGCGGCCACCGACACCGAGGACTCGCCAGGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: MSLAYPERPRDD*RPPTPRTRQVF Trigger: GAACACCTGGCGAGTCCTCGGTGTCGGTGGCCGGCAGTCATCTCGCGGCCGTTCAGGATAAGCCAGAGACAT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000393766.6 |
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| CDS GCA 72 bp | AGACAGCCTTATAATTCTGAACGGCCGCGAGATGACTaGCGGCCACCGACACCGAGGACTCGCCAGGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: RQPYNSERPRDD*RPPTPRTRQVF Trigger: GAACACCTGGCGAGTCCTCGGTGTCGGTGGCCGGCAGTCATCTCGCGGCCGTTCAGAATTATAAGGCTGTCT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000261507.11 |
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| CDS GCA 72 bp | CTGCTTTTGTATAACTTTCGCCAGCCTATCACCCTGTaGTGCAACTATCTTCTACGTCCTGTCTCCCGAAGA | + |
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Preference number: 6 (lower is better) Translates to: LLLYNFRQPITL*CNYLLRPVSRR Trigger: TCTTCGGGAGACAGGACGTAGAAGATAGTTGCAGCACAGGGTGATAGGCTGGCGAAAGTTATACAAAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505270.1 |
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| CDS GCA 72 bp | TGCAGACAGCCTTATAATTCTCCTTCTAGTGGTTCCTaGTTTTGTATAACTTTCGCCAGCCTATCACCCTGT | + |
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Preference number: 6 (lower is better) Translates to: CRQPYNSPSSGS*FCITFASLSPC Trigger: ACAGGGTGATAGGCTGGCGAAAGTTATACAAAAGCAGGAACCACTAGAAGGAGAATTATAAGGCTGTCTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505270.1 |
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