RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MSL2 (Homo sapiens)

Ensembl gene IDs: ENSG00000174579

Ensembl transcript IDs: ENST00000309993.3, ENST00000434835.2, ENST00000473093.1, ENST00000481989.1, ENST00000491050.1

Found 222 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGCGGCCAGTGGCAATAAGTACAATACACAAATCTGGGCAAGTCTaGGAGCATTATTCCAAAATTATTTTAAGTAAATCCCAATTACTA +
Preference number: 1 (lower is better)
Translates to: WRPVAISTIHKSGQV*EHYSKIILSKSQLL
Trigger: TAGTAATTGGGATTTACTTAAAATAATTTTGGAATAATGCTCCCAGACTTGCCCAGATTTGTGTATTGTACTTATTGCCACTGGCCGCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR CAA 90 bp AGCCAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTaGAGCTGGACACATCAGCTTTCCAACAGGAGAAACATCAATGAC +
Preference number: 2 (lower is better)
Translates to: SQYFMIRNGMMSAQR*SWTHQLSNRRNIND
Trigger: GTCATTGATGTTTCTCCTGTTGGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR-3UTR TCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAACAATCTTTATGGACTaGCTAGATACCACTTCCTTA +
Preference number: 2 (lower is better)
Translates to: SMTSEGSTEFPELMATFPTIFMD*LDTTSL
Trigger: TAAGGAAGTGGTATCTAGTCAGTCCATAAAGATTGT...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
3UTR-3UTR TCA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTGCGAGTAACCATCATTaGACATGCTGTGTGCCAAAT +
Preference number: 2 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCASNHH*TCCVPN
Trigger: ATTTGGCACACAGCATGTTCAATGATGGTTACTCGC...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR-3UTR GCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCACAACAGAACCATAGCTaGCGTAAAACTGTAGCTATT +
Preference number: 2 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSQQNHS*RKTVAI
Trigger: AATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTG...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
3UTR-3UTR GCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCCAACAGAACCATAGCTaGCGTAAAACTGTAGCTATT +
Preference number: 2 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSQQNHS*RKTVAI
Trigger: AATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTG...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR-3UTR CCA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTAAATCTGGGCAAGTCTaGGAGCATTATTCCAAAATT +
Preference number: 2 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSKSGQV*EHYSKI
Trigger: AATTTTGGAATAATGCTCCCAGACTTGCCCAGATTT...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR-3UTR GCA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTCTGAAACATACTTTGTaGTTTACATGCAAAAGAGCA +
Preference number: 2 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCLKHTL*FTCKRA
Trigger: TGCTCTTTTGCATGTAAAGCACAAAGTATGTTTCAG...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR CCA 72 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTaGACACATCAGCTTTCCAACAGGAGAAACATCAAT +
Preference number: 3 (lower is better)
Translates to: IRNGMMSAQRLS*THQLSNRRNIN
Trigger: ATTGATGTTTCTCCTGTTGGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCACGCAGTTCCCCGAGGTaGCGAGGCGGGCGGGAGTCC +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPRSSPR*RGGRES
Trigger: GGACTCCCGCCCGCCTCGCCACCTCGGGGAACTGCG...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCGCTCGGCAGGCGGCCTaGACTCGAGCTCCATCTCCG +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFARQAA*TRAPSP
Trigger: CGGAGATGGAGCTCGAGTGCAGGCCGCCTGCCGAGC...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACCTCCGCCCCGTGGGTTaGAGCCCGCAGTTCCCCGAG +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNLRPVG*SPQFPE
Trigger: CTCGGGGAACTGCGGGCTGCAACCCACGGGGCGGAG...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGCCTCAGGCCTCTGCTaGCGGCGACGACGACCGTTA +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSASGLC*RRRRPL
Trigger: TAACGGTCGTCGTCGCCGCCAGCAGAGGCCTGAGGC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTACAATCCTCCCACACATaGGGCCTTGGCGCCCCTCCG +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLQSSHT*GLGAPP
Trigger: CGGAGGGGCGCCAAGGCCCCATGTGTGGGAGGATTG...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACCTCCGGGGTCGTAGTTaGGCACTAGGCGGCTCGCGG +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNLRGRS*ALGGSR
Trigger: CCGCGAGCCGCCTAGTGCTCAACTACGACCCCGGAG...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTGGCGCCTCAGGCCTCTaGTGGCGGCGACGACGACCG +
Preference number: 4 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSGASGL*WRRRRP
Trigger: CGGTCGTCGTCGCCGCCAGCAGAGGCCTGAGGCGCC...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACTGGCTCTCCGCCCCGTaGGTTGCAGCCCGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNWLSAP*VAARSS
Trigger: GGAACTGCGGGCTGCAACCCACGGGGCGGAGAGCCA...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCATGTCACAGGAGCAGATaGCCCCAGTGTTGGGCCTCG +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPCHRSR*PQCWAS
Trigger: CGAGGCCCAACACTGGGGGCATCTGCTCCTGTGACA...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCATCCCGCGGGCTGTGTaGCGCCTCAGGCCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSIPRAV*RLRPLL
Trigger: CAGCAGAGGCCTGAGGCGCCACACAGCCCGCGGGAT...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCCTCCTCAAGTCGAGCTaGCAGGCGCGGGAGCAGGCC +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSLLKSS*QAREQA
Trigger: GGCCTGCTCCCGCGCCTGCCAGCTCGACTTGAGGAG...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTATTTGTGGAGGAACCTaGGGCAAAGTTCCGCGCCGG +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSAICGGT*GKVPRR
Trigger: CCGGCGCGGAACTTTGCCCCAGGTTCCTCCACAAAT...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS-3UTR TCA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAGGCGGCGACGAAGGTTaGTGTTGCGGCTGGCGGACG +
Preference number: 4 (lower is better)
Translates to: NLNSSLAILHNNQGPHILGGDEG*CCGWRT
Trigger: CGTCCGCCAGCCGCAACATCAACCTTCGTCGCCGCC...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTATTCTGGCACGGCAAATaGCTCCAGCTTCTTCTCCCC +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVFWHGK*LQLLLP
Trigger: GGGGAGAAGAAGCTGGAGGCATTTGCCGTGCCAGAA...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTCTCCAAGGCCTTTTCTaGCACGGCAAATGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSALQGLF*HGKCLQ
Trigger: CTGGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAG...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCCGGGTTCTCCAGCTGTaGGTTCATCAGCTTAGCCCA +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSRVLQL*VHQLSP
Trigger: TGGGCTAAGCTGATGAACCCACAGCTGGAGAACCCG...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS-3UTR GCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCAAAGTGAGCCTGGTCTaGTCCAAGGCCTTTTCTGGC +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSKVSLV*SKAFSG
Trigger: GCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTT...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCTGTGTCACAAACGGGTaGCAGGCTGTCAGACAGATC +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSCVTNG*QAVRQI
Trigger: GATCTGTCTGACAGCCTGCCACCCGTTTGTGACACA...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCTGTGTCACAAACGGGTaGCAGGCTGTCAGACAGATC +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFCVTNG*QAVRQI
Trigger: GATCTGTCTGACAGCCTGCCACCCGTTTGTGACACA...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCAGATGCCCCCAGTGTTaGGCCTCGGATAATGGTAGA +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSRCPQC*ASDNGR
Trigger: TCTACCATTATCCGAGGCCCAACACTGGGGGCATCT...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTACCAATGGCTCCCGGTTaGAAAGAAATTCCGGATCCA +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLPMAPG*KEIPDP
Trigger: TGGATCCGGAATTTCTTTTCAACCGGGAGCCATTGG...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGTACATGATAACCCATaGAGTGCAGGACTGGTGGAC +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVVHDNP*SAGLVD
Trigger: GTCCACCAGTCCTGCACTTCATGGGTTATCATGTAC...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCGCAGCCAGGGAACGATaGCGAATTTGCAACAATTCG +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFAARER*RICNNS
Trigger: CGAATTGTTGCAAATTCGCCATCGTTCCCTGGCTGC...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGTCCATTGGATACAGTaGCTTCCAAGTTCGGCTGCA +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVVHWIQ*LPSSAA
Trigger: TGCAGCCGAACTTGGAAGCCACTGTATCCAATGGAC...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCCGTCAAAGCATTTGTaGAGGAACCTGGGGCAAAGT +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFPSKHL*RNLGQS
Trigger: ACTTTGCCCCAGGTTCCTCCACAAATGCTTTGACGG...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS-3UTR TCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTACTGGGGACCCTGTaGCATTTATTACACTGGTGC +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSALLGTL*HLLHWC
Trigger: GCACCAGTGTAATAAATGTCACAGGGTCCCCAGTAA...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAGCTTCCAAGTTCGGCTaGAAATTAGGGCAACAGACC +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPASKFG*KLGQQT
Trigger: GGTCTGTTGCCCTAATTTGCAGCCGAACTTGGAAGC...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAAAAGTGAGCCTGGTCTaGTCCAAGGCCTTTTCTGGC +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSKVSLV*SKAFSG
Trigger: GCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTT...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGAAGGAGGTGTCATCTaGTCTGTGTCCAAAGGTTTC +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVEGGVI*SVSKGF
Trigger: GAAACCTTTGGACACAGAGCAGATGACACCTCCTTC...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACTCCAAGGCCTTTTCTaGCACGGCAAATGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTLQGLF*HGKCLQ
Trigger: CTGGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAG...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGGAGATAAACTAGCTTaGGGATCAGTTGTGGGTTCT +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSGDKLA*GSVVGS
Trigger: AGAACCCACAACTGATCCTCAAGCTAGTTTATCTCC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCGAAATTGGAAGTGGCTaGACTTTCTCACTGTCACTC +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFEIGSG*TFSLSL
Trigger: GAGTGACAGTGAGAAAGTTCAGCCACTTCCAATTTC...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTTTCTGGCACGGCAAATaGCTCCAGCTTCTTCTCCCC +
Preference number: 4 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCFWHGK*LQLLLP
Trigger: GGGGAGAAGAAGCTGGAGGCATTTGCCGTGCCAGAA...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCCTTGAGGATCAGTTGTaGGTTCTGAGGTTGAAGGTA +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSLEDQL*VLRLKV
Trigger: TACCTTCAACCTCAGAACCCACAACTGATCCTCAAG...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCTGGAACATAAGTCAGTaGCTACTGTGTCACAAACGG +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFWNISQ*LLCHKR
Trigger: CCGTTTGTGACACAGTAGCCACTGACTTATGTTCCA...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACGTCCATTGGATACAGTaGCTTCCAAGTTCGGCTGCA +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNVHWIQ*LPSSAA
Trigger: TGCAGCCGAACTTGGAAGCCACTGTATCCAATGGAC...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGCAGAAAAGGTCCATTaGATACAGTGGCTTCCAAGT +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSAEKVH*IQWLPS
Trigger: ACTTGGAAGCCACTGTATCCAATGGACCTTTTCTGC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCAAGTTTGTGGAGCTaGAACAATCCTCCCACACAT +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSASLWS*NNPPTH
Trigger: ATGTGTGGGAGGATTGTTTCAGCTCCACAAACTTGC...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAGTACATGATAACCCATaGAGTGCAGGACTGGTGGAC +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTVHDNP*SAGLVD
Trigger: GTCCACCAGTCCTGCACTTCATGGGTTATCATGTAC...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTACTCACTGTCACTCTCTaGTCTGGATCGTTTTCTATT +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLLTVTL*SGSFSI
Trigger: AATAGAAAACGATCCAGATCAGAGAGTGACAGTGAG...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTACTCACTGTCACTCTCTaGTCTGGATCGTTTTCTATT +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVLTVTL*SGSFSI
Trigger: AATAGAAAACGATCCAGATCAGAGAGTGACAGTGAG...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGCTTGGTTTTAGAGTaGGATTTCTTGGATCCATGT +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVGLVLE*DFLDPC
Trigger: ACATGGATCCAAGAAATCTCACTCTAAAACCAAGCC...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTAGAACACTTGGATTTTaGGTAGCACGCCCACATTTA +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSARTLGF*VARPHL
Trigger: TAAATGTGGGCGTGCTACTCAAAATCCAAGTGTTCT...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGCTCTTTCAAGCAACTaGCTAGATTTCCCTTCAACA +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSALSSN*LDFPST
Trigger: TGTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAGCTTCCAAGTTCGGCTaGAAATTAGGGCAACAGACC +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTASKFG*KLGQQT
Trigger: GGTCTGTTGCCCTAATTTGCAGCCGAACTTGGAAGC...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCCCACTTTGTCTATATTaGCAACCTCCCATGCATCAA +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSPLCLY*QPPMHQ
Trigger: TTGATGCATGGGAGGTTGGCAATATAGACAAAGTGG...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAACACTTCGACACCAATaGCTCCCGGTTGAAAAGAAA +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPTLRHQ*LPVEKK
Trigger: TTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGT...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGATGCCCCCAGTGTTaGGCCTCGGATAATGGTAGA +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSRCPQC*ASDNGR
Trigger: TCTACCATTATCCGAGGCCCAACACTGGGGGCATCT...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTCTTGGTAGGACTTCCTaGCATAAAATGATGACTAGG +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSALGRTS*HKMMTR
Trigger: CCTAGTCATCATTTTATGCCAGGAAGTCCTACCAAG...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTGAAAATAAGTCAAAGTaGCGGCCAGTGGCAATAAGT +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSAENKSK*RPVAIS
Trigger: ACTTATTGCCACTGGCCGCCACTTTGACTTATTTTC...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
3UTR CAA 72 bp TTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTaGAGCTGGACACATCAGCTTTCCAACAGGAGAAAC +
Preference number: 4 (lower is better)
Translates to: FMIRNGMMSAQR*SWTHQLSNRRN
Trigger: GTTTCTCCTGTTGGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACTCCAGACCAAAAATATaGGAGAGAAACCAGCGTTCG +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNSRPKI*ERNQRS
Trigger: CGAACGCTGGTTTCTCTCTCATATTTTTGGTCTGGA...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACGGAGATAAACTAGCTTaGGGATCAGTTGTGGGTTCT +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNGDKLA*GSVVGS
Trigger: AGAACCCACAACTGATCCTCAAGCTAGTTTATCTCC...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCACAGTTGCTATAGGTTaGAGAGAAATTTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFTVAIG*REILLS
Trigger: GGAGAGCAAAATTTCTCTTCAACCTATAGCAACTGT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTAACAGTTGCTATAGGTTaGAGAGAAATTTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLTVAIG*REILLS
Trigger: GGAGAGCAAAATTTCTCTTCAACCTATAGCAACTGT...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTGAACACTGCTCAAAGTaGAGGAGGGATTTAGAATTT +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSAEHCSK*RRDLEF
Trigger: AAATTCTAAATCCCTCCTTCACTTTGAGCAGTGTTC...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCACTAGGATGCTTAACTaGTTGTTTTCCTCAAACTGC +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFTRMLN*LFSSNC
Trigger: GCAGTTTGAGGAAAACAAGCAGTTAAGCATCCTAGT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTAAGCAGTTCACTAGGATaGTTAACTGCTTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLSSSLG*LTACFP
Trigger: AGGAAAACAAGCAGTTAAGCATCCTAGTGAACTGCT...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCAGAAGAACAGTCAACTaGTTCTATTATATCCCGTGC +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFRRTVN*FYYIPC
Trigger: GCACGGGATATAATAGAAGCAGTTGACTGTTCTTCT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCAACAGAACCATAGCTaGCGTAAAACTGTAGCTATT +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFQQNHS*RKTVAI
Trigger: AATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTG...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGTTTTATTTGGGCTGTaGTCTTTCAAGCAACTGACT +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSVLFGL*SFKQLT
Trigger: AGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAAC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACCTTGAGGATCAGTTGTaGGTTCTGAGGTTGAAGGTA +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNLEDQL*VLRLKV
Trigger: TACCTTCAACCTCAGAACCCACAACTGATCCTCAAG...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACTGGAACATAAGTCAGTaGCTACTGTGTCACAAACGG +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNWNISQ*LLCHKR
Trigger: CCGTTTGTGACACAGTAGCCACTGACTTATGTTCCA...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTAAGATATCAATGCCTGTaGAACATAAGTCAGTGGCTA +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLRYQCL*NISQWL
Trigger: TAGCCACTGACTTATGTTCCACAGGCATTGATATCT...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCAGATATCAATGCCTGTaGAACATAAGTCAGTGGCTA +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFRYQCL*NISQWL
Trigger: TAGCCACTGACTTATGTTCCACAGGCATTGATATCT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTATTATGGCTAAGAGACTaGGAAGAAAGCTGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVLWLRD*EESCRK
Trigger: TTTTCTGCAGCTTTCTTCCCAGTCTCTTAGCCATAA...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAGGTAGAAATTGGAAGTaGCTGAACTTTCTCACTGTC +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPGRNWK*LNFLTV
Trigger: GACAGTGAGAAAGTTCAGCCACTTCCAATTTCTACC...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCACTTGGTAGGACTTCCTaGCATAAAATGATGACTAGG +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPLGRTS*HKMMTR
Trigger: CCTAGTCATCATTTTATGCCAGGAAGTCCTACCAAG...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCATGTAAGAACACTTaGATTTTGAGTAGCACGCCC +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSACKNT*ILSSTP
Trigger: GGGCGTGCTACTCAAAATCCAAGTGTTCTTACATGC...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCACTCCTCACAAAACAATaGTCCATCATTAAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPLLTKQ*SIIKQS
Trigger: GCTTTGCTTAATGATGGATCATTGTTTTGTGAGGAG...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAAGAACACTTGGATTTTaGGTAGCACGCCCACATTTA +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSRTLGF*VARPHL
Trigger: TAAATGTGGGCGTGCTACTCAAAATCCAAGTGTTCT...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTTTACTGGGGACCCTGTaGCATTTATTACACTGGTGC +
Preference number: 4 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCLLGTL*HLLHWC
Trigger: GCACCAGTGTAATAAATGTCACAGGGTCCCCAGTAA...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCACAATCTTTATGGACTaGCTAGATACCACTTCCTTA +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFTIFMD*LDTTSL
Trigger: TAAGGAAGTGGTATCTAGTCAGTCCATAAAGATTGT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAACAATCTTTATGGACTaGCTAGATACCACTTCCTTA +
Preference number: 4 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVTIFMD*LDTTSL
Trigger: TAAGGAAGTGGTATCTAGTCAGTCCATAAAGATTGT...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAGCGAGTAACCATCATTaGACATGCTGTGTGCCAAAT +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTASNHH*TCCVPN
Trigger: ATTTGGCACACAGCATGTTCAATGATGGTTACTCGC...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTAAAAACAACTCTACCTaGCCACATTCACAGAAAATG +
Preference number: 4 (lower is better)
Translates to: HDQKWYDVSTKVELDTSAKNNST*PHSQKM
Trigger: CATTTTCTGTGAATGTGGTCAGGTAGAGTTGTTTTT...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAACTGCTCATAGTCTTTaGACCAGCTACAGGAAGGTT +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTTAHSL*TSYRKV
Trigger: AACCTTCCTGTAGCTGGTGCAAAGACTATGAGCAGT...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTATTCTATTATATCCCGTaGCAGTGTAGTCTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLFYYIP*QCSLCY
Trigger: ATAACACAGACTACACTGGCACGGGATATAATAGAA...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCTCCATTGGGAACAGTTaGTATAGGTTGAAGAGAAAT +
Preference number: 4 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFSIGNS*YRLKRN
Trigger: ATTTCTCTTCAACCTATAGCAACTGTTCCCAATGGA...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCATTATGGCTAAGAGACTaGGAAGAAAGCTGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPLWLRD*EESCRK
Trigger: TTTTCTGCAGCTTTCTTCCCAGTCTCTTAGCCATAA...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTAGATAATGGTAGAAATTaGAAGTGGCTGAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLDNGRN*KWLNFL
Trigger: GAGAAAGTTCAGCCACTTCCAATTTCTACCATTATC...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAGCATGTAAGAACACTTaGATTTTGAGTAGCACGCCC +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTACKNT*ILSSTP
Trigger: GGGCGTGCTACTCAAAATCCAAGTGTTCTTACATGC...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTATATCATCATGTGTACTaGCAGCTAAAAACGTCGTTA +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLYHHVY*QLKTSL
Trigger: TAACGACGTTTTTAGCTGCCAGTACACATGATGATA...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTAAAATCTGGGCAAGTCTaGGAGCATTATTCCAAAATT +
Preference number: 4 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLKSGQV*EHYSKI
Trigger: AATTTTGGAATAATGCTCCCAGACTTGCCCAGATTT...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCATACAATACACAAATCTaGGCAAGTCTGGGAGCATTA +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPYNTQI*ASLGAL
Trigger: TAATGCTCCCAGACTTGCCCAGATTTGTGTATTGTA...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACCTCCTCACAAAACAATaGTCCATCATTAAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNLLTKQ*SIIKQS
Trigger: GCTTTGCTTAATGATGGATCATTGTTTTGTGAGGAG...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTGAAATTGGAAGTGGCTaGACTTTCTCACTGTCACTC +
Preference number: 4 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCEIGSG*TFSLSL
Trigger: GAGTGACAGTGAGAAAGTTCAGCCACTTCCAATTTC...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp CTTGTTTTATTTGGGCTGTGCTCTTTCAAGCAACTGACTAGATTTCCCTTCAACTGCCTTTACAAGTTTTaGAGACATAATGTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: LVLFGLCSFKQLTRFPFNCLYKF*RHNVGR
Trigger: CCTGCCAACATTATGTCTGCAAAACTTGTAAAGGCA...GTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACAGCCCAAATAAAACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTACTGCTCATAGTCTTTaGACCAGCTACAGGAAGGTT +
Preference number: 4 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCTAHSL*TSYRKV
Trigger: AACCTTCCTGTAGCTGGTGCAAAGACTATGAGCAGT...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAAGAAGAACAGTCAACTaGTTCTATTATATCCCGTGC +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSRRTVN*FYYIPC
Trigger: GCACGGGATATAATAGAAGCAGTTGACTGTTCTTCT...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAAACTGCAGATATCAATaGCTGTGGAACATAAGTCAG +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSNCRYQ*LWNISQ
Trigger: CTGACTTATGTTCCACAGGCATTGATATCTGCAGTT...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCGCAGAAAAGGTCCATTaGATACAGTGGCTTCCAAGT +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSAEKVH*IQWLPS
Trigger: ACTTGGAAGCCACTGTATCCAATGGACCTTTTCTGC...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCTGTCACTCTCTGATCTaGATCGTTTTCTATTCAATT +
Preference number: 4 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSCHSLI*IVFYSI
Trigger: AATTGAATAGAAAACGATCCAGATCAGAGAGTGACA...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAGGTAGAAATTGGAAGTaGCTGAACTTTCTCACTGTC +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTGRNWK*LNFLTV
Trigger: GACAGTGAGAAAGTTCAGCCACTTCCAATTTCTACC...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCATATCATCATGTGTACTaGCAGCTAAAAACGTCGTTA +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPYHHVY*QLKTSL
Trigger: TAACGACGTTTTTAGCTGCCAGTACACATGATGATA...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR TCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCGGCTTGGTTTTAGAGTaGGATTTCTTGGATCCATGT +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSGLVLE*DFLDPC
Trigger: ACATGGATCCAAGAAATCTCACTCTAAAACCAAGCC...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR TCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACACATTCACAGAAAATaGCACCAGGATACACTACAA +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTHIHRK*HQDTLQ
Trigger: TTGTAGTGTATCCTGGTGTCATTTTCTGTGAATGTG...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAATTCACGGGGTTCATTaGAGACACTTCGACACCAAT +
Preference number: 4 (lower is better)
Translates to: NLNSSLAILHNNQGPHILIHGVH*RHFDTN
Trigger: ATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAAT...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACATGCCTTTACAAGTTTTaGAGACATAATGTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTCLYKF*RHNVGR
Trigger: CCTGCCAACATTATGTCTGCAAAACTTGTAAAGGCA...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CCA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCATTTCATGATCAGAAATaGTATGATGTCAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: SMTSEGSTEFPELMATFPFHDQK*YDVSTK
Trigger: CTTTGTGCTGACATCATACCATTTCTGATCATGAAA...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCGAACGATGGCGAATTTaGAACAATTCGGAAGAAATC +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSERWRI*NNSEEI
Trigger: GATTTCTTCCGAATTGTTGCAAATTCGCCATCGTTC...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTACTAGGATGCTTAACTaGTTGTTTTCCTCAAACTGC +
Preference number: 4 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSTRMLN*LFSSNC
Trigger: GCAGTTTGAGGAAAACAAGCAGTTAAGCATCCTAGT...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACATCCATTGGGAACAGTTaGTATAGGTTGAAGAGAAAT +
Preference number: 4 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTSIGNS*YRLKRN
Trigger: ATTTCTCTTCAACCTATAGCAACTGTTCCCAATGGA...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR GCA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTCAACAGAACCATAGCTaGCGTAAAACTGTAGCTATT +
Preference number: 4 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSQQNHS*RKTVAI
Trigger: AATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTG...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCATTCAACCTACCTAAATaGACAGGCTTTATAAAAAGG +
Preference number: 4 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSFNLPK*TGFIKR
Trigger: CCTTTTTATAAAGCCTGTGCATTTAGGTAGGTTGAA...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAAGTAACCAAAATCCGTaGAAGTTTGTGGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: NLNSSLAILHNNQGPHILSNQNP*KFVELK
Trigger: TTTCAGCTCCACAAACTTGCACGGATTTTGGTTACT...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAAGCAGTTCACTAGGATaGTTAACTGCTTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: NLNSSLAILHNNQGPHILSSSLG*LTACFP
Trigger: AGGAAAACAAGCAGTTAAGCATCCTAGTGAACTGCT...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCTTCTATTATATCCCGTaGCAGTGTAGTCTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSFYYIP*QCSLCY
Trigger: ATAACACAGACTACACTGGCACGGGATATAATAGAA...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAAACTGCAGATATCAATaGCTGTGGAACATAAGTCAG +
Preference number: 4 (lower is better)
Translates to: NLNSSLAILHNNQGPHILNCRYQ*LWNISQ
Trigger: CTGACTTATGTTCCACAGGCATTGATATCTGCAGTT...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCGATAATGGTAGAAATTaGAAGTGGCTGAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSDNGRN*KWLNFL
Trigger: GAGAAAGTTCAGCCACTTCCAATTTCTACCATTATC...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTTGTCACTCTCTGATCTaGATCGTTTTCTATTCAATT +
Preference number: 4 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSCHSLI*IVFYSI
Trigger: AATTGAATAGAAAACGATCCAGATCAGAGAGTGACA...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CCA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCTTTCATGATCAGAAATaGTATGATGTCAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSFHDQK*YDVSTK
Trigger: CTTTGTGCTGACATCATACCATTTCTGATCATGAAA...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR GCA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTACTGAAACATACTTTGTaGTTTACATGCAAAAGAGCA +
Preference number: 4 (lower is better)
Translates to: NLNSSLAILHNNQGPHILLKHTL*FTCKRA
Trigger: TGCTCTTTTGCATGTAAAGCACAAAGTATGTTTCAG...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 90 bp CGGACGCCGCCGCCGCGCTCTCCATATCGGACGCGGGGCCCAGACTaGGCCCTGGCTCTCCGCCCCGTGGGTTGCAGCCCGCAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: RTPPPRSPYRTRGPD*ALALRPVGCSPQFP
Trigger: GGGGAACTGCGGGCTGCAACCCACGGGGCGGAGAGCCAGGGCGCAGTCTGGGCCCCGCGTCCGATATGGAGAGCGCGGCGGCGGCGTCCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 90 bp CTCGAGCTCCATCTCCGGACACGGAGGCGCCTCCTCAAGTCGAGCTaGCAGGCGCGGGAGCAGGCCCCGGCCCCGTCTGAGGCGCGGCAC +
Preference number: 5 (lower is better)
Translates to: LELHLRTRRRLLKSS*QAREQAPAPSEARH
Trigger: GTGCCGCGCCTCAGACGGGGCCGGGGCCTGCTCCCGCGCCTGCCAGCTCGACTTGAGGAGGCGCCTCCGTGTCCGGAGATGGAGCTCGAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS TCA 90 bp CCTCAAGTCGAGCTGGCAGGCGCGGGAGCAGGCCCCGGCCCCGTCTaGGGCGCGGCACGCTTCTCCCGGGCTGCAGGGCCTCTTACTCCA +
Preference number: 5 (lower is better)
Translates to: PQVELAGAGAGPGPV*GAARFSRAAGPLTP
Trigger: TGGAGTAAGAGGCCCTGCAGCCCGGGAGAAGCGTGCCGCGCCTCAGACGGGGCCGGGGCCTGCTCCCGCGCCTGCCAGCTCGACTTGAGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 90 bp GCGGGACTCGGAGCTCAGTCTAGCCCCGCGGCTCGGCAGGCGGCCTaGACTCGAGCTCCATCTCCGGACACGGAGGCGCCTCCTCAAGTC +
Preference number: 5 (lower is better)
Translates to: AGLGAQSSPAARQAA*TRAPSPDTEAPPQV
Trigger: GACTTGAGGAGGCGCCTCCGTGTCCGGAGATGGAGCTCGAGTGCAGGCCGCCTGCCGAGCCGCGGGGCTAGACTGAGCTCCGAGTCCCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 90 bp TTCGAGTTCGTCCGGAGCGACCACAGAGCGCAGAACGCGGCGGCTTaGGCGCTCGGGGCGGGACTCGGAGCTCAGTCTAGCCCCGCGGCT +
Preference number: 5 (lower is better)
Translates to: FEFVRSDHRAQNAAA*ALGAGLGAQSSPAA
Trigger: AGCCGCGGGGCTAGACTGAGCTCCGAGTCCCGCCCCGAGCGCCCAAGCCGCCGCGTTCTGCGCTCTGTGGTCGCTCCGGACGAACTCGAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS TCA 90 bp CGGCTTCCCGGATCTAGTGCAAGACGCCGCGGCGGCGACGAAGGTTaGTGTTGCGGCTGGCGGACGCCGCCGCCGCGCTCTCCATATCGG +
Preference number: 5 (lower is better)
Translates to: RLPGSSARRRGGDEG*CCGWRTPPPRSPYR
Trigger: CCGATATGGAGAGCGCGGCGGCGGCGTCCGCCAGCCGCAACATCAACCTTCGTCGCCGCCGCGGCGTCTTGCACTAGATCCGGGAAGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 90 bp TGCGGCCTTAATGGATCCCGCGGGCTGTGTGGCGCCTCAGGCCTCTaGTGGCGGCGACGACGACCGTTACCCCAACGGGCAAAGCCACTG +
Preference number: 5 (lower is better)
Translates to: CGLNGSRGLCGASGL*WRRRRPLPQRAKPL
Trigger: CAGTGGCTTTGCCCGTTGGGGTAACGGTCGTCGTCGCCGCCAGCAGAGGCCTGAGGCGCCACACAGCCCGCGGGATCCATTAAGGCCGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000473093.1
CDS CCA 90 bp GGCCTTAATGGATCCCGCGGGCTGTGTGGCGCCTCAGGCCTCTGCTaGCGGCGACGACGACCGTTACCCCAACGGGCAAAGCCACTGTCA +
Preference number: 5 (lower is better)
Translates to: GLNGSRGLCGASGLC*RRRRPLPQRAKPLS
Trigger: TGACAGTGGCTTTGCCCGTTGGGGTAACGGTCGTCGTCGCCGCCAGCAGAGGCCTGAGGCGCCACACAGCCCGCGGGATCCATTAAGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000473093.1
CDS CCA 90 bp GCCTTCCCCGGCTCGCTGTTAACCGTCAAACCGTCAAAGCATTTGTaGAGGAACCTGGGGCAAAGTTCCGCGCCGGGTTCTCCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: AFPGSLLTVKPSKHL*RNLGQSSAPGSPAV
Trigger: CACAGCTGGAGAACCCGGCGCGGAACTTTGCCCCAGGTTCCTCCACAAATGCTTTGACGGTTTGACGGTTAACAGCGAGCCGGGGAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS TCA 90 bp GGGCCTTGGCGCCCCTCCGTCCCTGAGACTTCCAGACCAAAAATATaGGAGAGAAACCAGCGTTCGAGTTCGTCCGGAGCGACCACAGAG +
Preference number: 5 (lower is better)
Translates to: GPWRPSVPETSRPKI*ERNQRSSSSGATTE
Trigger: CTCTGTGGTCGCTCCGGACGAACTCGAACGCTGGTTTCTCTCTCATATTTTTGGTCTGGAAGTCTCAGGGACGGAGGGGCGCCAAGGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGCAGAACGCGGCGGCTaGGGCGCTCGGGGCGGGACT +
Preference number: 5 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSAERGG*GARGGT
Trigger: AGTCCCGCCCCGAGCGCCCAAGCCGCCGCGTTCTGC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp CATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTCTCCGCCCCGTGGGTaGCAGCCCGCAGTTCCCCGA +
Preference number: 5 (lower is better)
Translates to: HDQKWYDVSTKVELDTSASPPRG*QPAVPR
Trigger: TCGGGGAACTGCGGGCTGCAACCCACGGGGCGGAGA...AGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 90 bp CGCACAGCAATGCTAGTCACGTTAATGCCCAAAGTGAGCCTGGTCTaGTCCAAGGCCTTTTCTGGCACGGCAAATGCCTCCAGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RTAMLVTLMPKVSLV*SKAFSGTANASSFF
Trigger: GAAGAAGCTGGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTTGGGCATTAACGTGACTAGCATTGCTGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CCA 90 bp CAAAATCCGTGCAAGTTTGTGGAGCTGAAACAATCCTCCCACACATaGGGCCTTGGCGCCCCTCCGTCCCTGAGACTTCCAGACCAAAAA +
Preference number: 5 (lower is better)
Translates to: QNPCKFVELKQSSHT*GLGAPPSLRLPDQK
Trigger: TTTTTGGTCTGGAAGTCTCAGGGACGGAGGGGCGCCAAGGCCCCATGTGTGGGAGGATTGTTTCAGCTCCACAAACTTGCACGGATTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 90 bp CACGTTAATGCCCAAAGTGAGCCTGGTCTGCTCCAAGGCCTTTTCTaGCACGGCAAATGCCTCCAGCTTCTTCTCCCCATTGGCCATATA +
Preference number: 5 (lower is better)
Translates to: HVNAQSEPGLLQGLF*HGKCLQLLLPIGHI
Trigger: TATATGGCCAATGGGGAGAAGAAGCTGGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTTGGGCATTAACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 90 bp GCGGCTCGCGGAAATGTAGAGAGCAGTAGCATTCACGGGGTTCATTaGAGACACTTCGACACCAATGGCTCCCGGTTGAAAAGAAATTCC +
Preference number: 5 (lower is better)
Translates to: AARGNVESSSIHGVH*RHFDTNGSRLKRNS
Trigger: GGAATTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCGCGAGCCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 90 bp TTTGCTCTCCCGTTTCACTGTCACAGGAGCAGATGCCCCCAGTGTTaGGCCTCGGATAATGGTAGAAATTGGAAGTGGCTGAACTTTCTC +
Preference number: 5 (lower is better)
Translates to: FALPFHCHRSRCPQC*ASDNGRNWKWLNFL
Trigger: GAGAAAGTTCAGCCACTTCCAATTTCTACCATTATCCGAGGCCCAACACTGGGGGCATCTGCTCCTGTGACAGTGAAACGGGAGAGCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTCGACGAAGGTTGATGTaGCGGCTGGCGGACGCCGCC +
Preference number: 5 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCRRRLM*RLADAA
Trigger: GGCGGCGTCCGCCAGCCGCAACATCAACCTTCGTCG...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTCGGCGGCGACGAAGGTaGATGTTGCGGCTGGCGGAC +
Preference number: 5 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSRRRRR*MLRLAD
Trigger: GTCCGCCAGCCGCAACATCAACCTTCGTCGCCGCCG...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTAGTAGCAAGGGCAGCGTaGGCCTCGGCATGTAAGAAC +
Preference number: 5 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLVARAA*ASACKN
Trigger: GTTCTTACATGCCGAGGCCAACGCTGCCCTTGCTAC...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 90 bp TTGAAGAGAAATTTTGCTCTCCCGTTTCACTGTCACAGGAGCAGATaGCCCCAGTGTTGGGCCTCGGATAATGGTAGAAATTGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: LKRNFALPFHCHRSR*PQCWASDNGRNWKW
Trigger: CCACTTCCAATTTCTACCATTATCCGAGGCCCAACACTGGGGGCATCTGCTCCTGTGACAGTGAAACGGGAGAGCAAAATTTCTCTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CCA 90 bp GTTAGAGTAGCAAGGGCAGCGTTGGCCTCGGCATGTAAGAACACTTaGATTTTGAGTAGCACGCCCACATTTACACCCTTTCTTTTCCTG +
Preference number: 5 (lower is better)
Translates to: VRVARAALASACKNT*ILSSTPTFTPFLFL
Trigger: CAGGAAAAGAAAGGGTGTAAATGTGGGCGTGCTACTCAAAATCCAAGTGTTCTTACATGCCGAGGCCAACGCTGCCCTTGCTACTCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS TCA 90 bp GCCCCCAGTGTTGGGCCTCGGATAATGGTAGAAATTGGAAGTGGCTaGACTTTCTCACTGTCACTCTCTGATCTGGATCGTTTTCTATTC +
Preference number: 5 (lower is better)
Translates to: APSVGPRIMVEIGSG*TFSLSLSDLDRFLF
Trigger: GAATAGAAAACGATCCAGATCAGAGAGTGACAGTGAGAAAGTTCAGCCACTTCCAATTTCTACCATTATCCGAGGCCCAACACTGGGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 90 bp AGAAATCAGAGCCGAACCATTGGCCAAACAAGTAACCAAAATCCGTaGAAGTTTGTGGAGCTGAAACAATCCTCCCACACATGGGGCCTT +
Preference number: 5 (lower is better)
Translates to: RNQSRTIGQTSNQNP*KFVELKQSSHTWGL
Trigger: AAGGCCCCATGTGTGGGAGGATTGTTTCAGCTCCACAAACTTGCACGGATTTTGGTTACTTGTTTGGCCAATGGTTCGGCTCTGATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp CAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAGGTTTATGTTGGCAGGTGGAGTaGGTGGGTGCAATAGGATCT +
Preference number: 5 (lower is better)
Translates to: QNHSCRKTVAISLPGVGLCWQVE*VGAIGS
Trigger: AGATCCTATTGCACCCACCAACTCCACCTGCCAACA...TAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCTGTTGGCAGGTGGAGTaGGTGGGTGCAATAGGATCT +
Preference number: 5 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFCWQVE*VGAIGS
Trigger: AGATCCTATTGCACCCACCAACTCCACCTGCCAACA...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCACCAATGGCTCCCGGTaGAAAAGAAATTCCGGATCC +
Preference number: 5 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFTNGSR*KRNSGS
Trigger: GGATCCGGAATTTCTTTTCAACCGGGAGCCATTGGT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTACATTCACGGGGTTCATaGCAGACACTTCGACACCAA +
Preference number: 5 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVHSRGS*QTLRHQ
Trigger: TTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAATG...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCTTTGCAGACATAATGTaGGCAGGTGGAGTTGGTGGG +
Preference number: 5 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSFADIM*AGGVGG
Trigger: CCCACCAACTCCACCTGCCAACATTATGTCTGCAAA...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGGTGTTGTGCCTCCATaGGGAACAGTTGCTATAGGT +
Preference number: 5 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSGVVPP*GTVAIG
Trigger: ACCTATAGCAACTGTTCCCAATGGAGGCACAACACC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCAAACCGTCAAAGCATTaGTGGAGGAACCTGGGGCAA +
Preference number: 5 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFKPSKH*WRNLGQ
Trigger: TTGCCCCAGGTTCCTCCACAAATGCTTTGACGGTTT...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS TCA 90 bp CTGATTTTAGGTGTTGTGCCTCCATTGGGAACAGTTGCTATAGGTTaGAGAGAAATTTTGCTCTCCCGTTTCACTGTCACAGGAGCAGAT +
Preference number: 5 (lower is better)
Translates to: LILGVVPPLGTVAIG*REILLSRFTVTGAD
Trigger: ATCTGCTCCTGTGACAGTGAAACGGGAGAGCAAAATTTCTCTTCAACCTATAGCAACTGTTCCCAATGGAGGCACAACACCTAAAATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 90 bp AGCTGCAGAAAAGGTCCATTGGATACAGTGGCTTCCAAGTTCGGCTaGAAATTAGGGCAACAGACCTCTGTATTTGAAACAGTTTCTAAG +
Preference number: 5 (lower is better)
Translates to: SCRKGPLDTVASKFG*KLGQQTSVFETVSK
Trigger: CTTAGAAACTGTTTCAAATACAGAGGTCTGTTGCCCTAATTTGCAGCCGAACTTGGAAGCCACTGTATCCAATGGACCTTTTCTGCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAGTAGCAAGGGCAGCGTaGGCCTCGGCATGTAAGAAC +
Preference number: 5 (lower is better)
Translates to: NLNSSLAILHNNQGPHILVARAA*ASACKN
Trigger: GTTCTTACATGCCGAGGCCAACGCTGCCCTTGCTAC...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAGGCCATATAGGAGTTTaGGCAGCCACGACATATACA +
Preference number: 5 (lower is better)
Translates to: SMTSEGSTEFPELMATFPGHIGV*AATTYT
Trigger: TGTATATGTCGTGGCTGCCAAAACTCCTATATGGCC...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAATGTCAGCACAAAGGTaGAGCTGGACACATCAGCTT +
Preference number: 5 (lower is better)
Translates to: SMTSEGSTEFPELMATFPMSAQR*SWTHQL
Trigger: AAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACAT...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp ATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCGGAACGATGGCGAATTaGCAACAATTCGGAAGAAAT +
Preference number: 5 (lower is better)
Translates to: IRNGMMSAQRLSWTHQLSGTMAN*QQFGRN
Trigger: ATTTCTTCCGAATTGTTGCAAATTCGCCATCGTTCC...GGAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp AACCAACAGAACCATAGCTGCCGTAAAACTGTAGCTATTTCCCTACCAGGAGTAAGGATGCTTAACTGCTaGTTTTCCTCAAACTGCTCA +
Preference number: 5 (lower is better)
Translates to: NQQNHSCRKTVAISLPGVRMLNC*FSSNCS
Trigger: TGAGCAGTTTGAGGAAAACAAGCAGTTAAGCATCCT...TACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCATTGTGGGTTCTGAGGTaGAAGGTAAAGGGGAATGTG +
Preference number: 5 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSLWVLR*KVKGNV
Trigger: CACATTCCCCTTTACCTTCAACCTCAGAACCCACAA...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS TCA 90 bp CCTCAACACTCAGTAACAGAGAGTCTCCAGGTTTTATATCTTCACTaGAACTGCAGATATCAATGCCTGTGGAACATAAGTCAGTGGCTA +
Preference number: 5 (lower is better)
Translates to: PQHSVTESLQVLYLH*NCRYQCLWNISQWL
Trigger: TAGCCACTGACTTATGTTCCACAGGCATTGATATCTGCAGTTTCAGTGAAGATATAAAACCTGGAGACTCTCTGTTACTGAGTGTTGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTTTTGCAGACATAATGTaGGCAGGTGGAGTTGGTGGG +
Preference number: 5 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSFADIM*AGGVGG
Trigger: CCCACCAACTCCACCTGCCAACATTATGTCTGCAAA...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAAGGATGCTTAACTGCTaGTTTTCCTCAAACTGCTCA +
Preference number: 5 (lower is better)
Translates to: SMTSEGSTEFPELMATFPRMLNC*FSSNCS
Trigger: TGAGCAGTTTGAGGAAAACAAGCAGTTAAGCATCCT...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCATTGCTATCTTCGGAGTaGCTGCTGTACATGATAACC +
Preference number: 5 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSLLSSE*LLYMIT
Trigger: GGTTATCATGTACAGCAGCAACTCCGAAGATAGCAA...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp AGAACAGATTTACAACTTTATATAGCAGGGCATCTGGGTTCAACACAAAACTGTGGTGTTGTGCCTCCATaGGGAACAGTTGCTATAGGT +
Preference number: 5 (lower is better)
Translates to: RTDLQLYIAGHLGSTQNCGVVPP*GTVAIG
Trigger: ACCTATAGCAACTGTTCCCAATGGAGGCACAACACC...ACAGTTTTGTGTTGAACCCAGATGCCCTGCTATATAAAGTTGTAAATCTGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCATTTTTGTACACAGTCTaGGTAGGACTTCCTGGCATA +
Preference number: 5 (lower is better)
Translates to: SMTSEGSTEFPELMATFPFLYTV*VGLPGI
Trigger: TATGCCAGGAAGTCCTACCAAGACTGTGTACAAAAA...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAGGCCATATAGGAGTTTaGGCAGCCACGACATATACA +
Preference number: 5 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTGHIGV*AATTYT
Trigger: TGTATATGTCGTGGCTGCCAAAACTCCTATATGGCC...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAACACCTAGTCAGTCCTaGTTTTATTTGGGCTGTGCT +
Preference number: 5 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSTPSQS*FYLGCA
Trigger: AGCACAGCCCAAATAAAACAAGGACTGACTAGGTGT...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCATCCACTTTGTCTATATaGCCAACCTCCCATGCATCA +
Preference number: 5 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSSTLSI*PTSHAS
Trigger: TGATGCATGGGAGGTTGGCAATATAGACAAAGTGGA...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp GATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGCTTTCCTAATGATTTCCACTTaGTCTATATTGCCAACCTCC +
Preference number: 5 (lower is better)
Translates to: DQKWYDVSTKVELDTSAFLMIST*SILPTS
Trigger: GGAGGTTGGCAATATAGACAAAGTGGAAATCATTAG...GAAAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS TCA 90 bp TTCAATTTTGCTATCTTCGGAGTTGCTGCTGTACATGATAACCCATaGAGTGCAGGACTGGTGGACATAAAAACATTATGGCTAAGAGAC +
Preference number: 5 (lower is better)
Translates to: FNFAIFGVAAVHDNP*SAGLVDIKTLWLRD
Trigger: GTCTCTTAGCCATAATGTTTTTATGTCCACCAGTCCTGCACTTCATGGGTTATCATGTACAGCAGCAACTCCGAAGATAGCAAAATTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCTTGTGGGTTCTGAGGTaGAAGGTAAAGGGGAATGTG +
Preference number: 5 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSLWVLR*KVKGNV
Trigger: CACATTCCCCTTTACCTTCAACCTCAGAACCCACAA...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCATTTTTGTACACAGTCTaGGTAGGACTTCCTGGCATA +
Preference number: 5 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSFLYTV*VGLPGI
Trigger: TATGCCAGGAAGTCCTACCAAGACTGTGTACAAAAA...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp TCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCAGTATGTCAGCACAAAGGTaGAGCTGGACACATCAGCTT +
Preference number: 5 (lower is better)
Translates to: SDLTRDGERSRNWKFSSSMSAQR*SWTHQL
Trigger: AAGCTGATGTGTCCAGCTCAACCTTTGTGCTGACAT...ACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TCAATGACATCTGAAGGCAGCACTGAGTTTCCTGAACTAATGGCTACTTTTCCAATACGTCAATCGTATTaGAATGTTCAGGTGAAGGAA +
Preference number: 5 (lower is better)
Translates to: SMTSEGSTEFPELMATFPIRQSY*NVQVKE
Trigger: TTCCTTCACCTGAACATTCAAATACGATTGACGTAT...TGGAAAAGTAGCCATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp ATGTCAGATCTTACTAGAGATGGTGAACGTAGTAGAAATTGGAAATTTTCCAGCTTGCTATCTTCGGAGTaGCTGCTGTACATGATAACC +
Preference number: 5 (lower is better)
Translates to: MSDLTRDGERSRNWKFSSLLSSE*LLYMIT
Trigger: GGTTATCATGTACAGCAGCAACTCCGAAGATAGCAA...GCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAATCAGAGCCGAACCATaGGCCAAACAAGTAACCAAA +
Preference number: 5 (lower is better)
Translates to: NLNSSLAILHNNQGPHILIRAEP*AKQVTK
Trigger: TTTGGTTACTTGTTTGGCCAATGGTTCGGCTCTGAT...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS-3UTR CAA 90 bp TTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACACATCAGTTTTCTATTCAATTTaGCTATCTTCGGAGTTGCTG +
Preference number: 5 (lower is better)
Translates to: FHDQKWYDVSTKVELDTSVFYSI*LSSELL
Trigger: CAGCAACTCCGAAGATAGCAAAATTGAATAGAAAAC...TGATGTGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp CAATATTTCATGATCAGAAATGGTATGATGTCAGCACAAAGGTTGAGCTGGACAATACGTCAATCGTATTaGAATGTTCAGGTGAAGGAA +
Preference number: 5 (lower is better)
Translates to: QYFMIRNGMMSAQRLSWTIRQSY*NVQVKE
Trigger: TTCCTTCACCTGAACATTCAAATACGATTGACGTAT...TGTCCAGCTCAACCTTTGTGCTGACATCATACCATTTCTGATCATGAAATATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS-3UTR CAA 90 bp AACCTGAATTCATCATTGGCAATATTACATAACAATCAAGGCCCTCACATACTAGTTTTCTATTCAATTTaGCTATCTTCGGAGTTGCTG +
Preference number: 5 (lower is better)
Translates to: NLNSSLAILHNNQGPHILVFYSI*LSSELL
Trigger: CAGCAACTCCGAAGATAGCAAAATTGAATAGAAAAC...TAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 72 bp GGCCCAGACTGCGCCCTGGCTCTCCGCCCCGTGGGTTaGAGCCCGCAGTTCCCCGAGGTGGCGAGGCGGGCG +
Preference number: 6 (lower is better)
Translates to: GPDCALALRPVG*SPQFPEVARRA
Trigger: CGCCCGCCTCGCCACCTCGGGGAACTGCGGGCTGCAACCCACGGGGCGGAGAGCCAGGGCGCAGTCTGGGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CAA 72 bp GGGCCCAGACTGCGCCCTGGCTCTCCGCCCCGTGGGTaGCAGCCCGCAGTTCCCCGAGGTGGCGAGGCGGGC +
Preference number: 6 (lower is better)
Translates to: GPRLRPGSPPRG*QPAVPRGGEAG
Trigger: GCCCGCCTCGCCACCTCGGGGAACTGCGGGCTGCAACCCACGGGGCGGAGAGCCAGGGCGCAGTCTGGGCCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 72 bp CCGCCGCGCTCTCCATATCGGACGCGGGGCCCAGACTaGGCCCTGGCTCTCCGCCCCGTGGGTTGCAGCCCG +
Preference number: 6 (lower is better)
Translates to: PPRSPYRTRGPD*ALALRPVGCSP
Trigger: CGGGCTGCAACCCACGGGGCGGAGAGCCAGGGCGCAGTCTGGGCCCCGCGTCCGATATGGAGAGCGCGGCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 72 bp CATCTCCGGACACGGAGGCGCCTCCTCAAGTCGAGCTaGCAGGCGCGGGAGCAGGCCCCGGCCCCGTCTGAG +
Preference number: 6 (lower is better)
Translates to: HLRTRRRLLKSS*QAREQAPAPSE
Trigger: CTCAGACGGGGCCGGGGCCTGCTCCCGCGCCTGCCAGCTCGACTTGAGGAGGCGCCTCCGTGTCCGGAGATG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 72 bp GGAGCTCAGTCTAGCCCCGCGGCTCGGCAGGCGGCCTaGACTCGAGCTCCATCTCCGGACACGGAGGCGCCT +
Preference number: 6 (lower is better)
Translates to: GAQSSPAARQAA*TRAPSPDTEAP
Trigger: AGGCGCCTCCGTGTCCGGAGATGGAGCTCGAGTGCAGGCCGCCTGCCGAGCCGCGGGGCTAGACTGAGCTCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 72 bp GCTCTCCATATCGGACGCGGGGCCCAGACTGCGCCCTaGCTCTCCGCCCCGTGGGTTGCAGCCCGCAGTTCC +
Preference number: 6 (lower is better)
Translates to: ALHIGRGAQTAP*LSAPWVAARSS
Trigger: GGAACTGCGGGCTGCAACCCACGGGGCGGAGAGCCAGGGCGCAGTCTGGGCCCCGCGTCCGATATGGAGAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS TCA 72 bp GGATCTAGTGCAAGACGCCGCGGCGGCGACGAAGGTTaGTGTTGCGGCTGGCGGACGCCGCCGCCGCGCTCT +
Preference number: 6 (lower is better)
Translates to: GSSARRRGGDEG*CCGWRTPPPRS
Trigger: AGAGCGCGGCGGCGGCGTCCGCCAGCCGCAACATCAACCTTCGTCGCCGCCGCGGCGTCTTGCACTAGATCC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 72 bp AATGGATCCCGCGGGCTGTGTGGCGCCTCAGGCCTCTaGTGGCGGCGACGACGACCGTTACCCCAACGGGCA +
Preference number: 6 (lower is better)
Translates to: NGSRGLCGASGL*WRRRRPLPQRA
Trigger: TGCCCGTTGGGGTAACGGTCGTCGTCGCCGCCAGCAGAGGCCTGAGGCGCCACACAGCCCGCGGGATCCATT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000473093.1
CDS CCA 72 bp ACCTGGGGCAAAGTTCCGCGCCGGGTTCTCCAGCTGTaGGTTCATCAGCTTAGCCCACCACTCCCACGTAAC +
Preference number: 6 (lower is better)
Translates to: TWGKVPRRVLQL*VHQLSPPLPRN
Trigger: GTTACGTGGGAGTGGTGGGCTAAGCTGATGAACCCACAGCTGGAGAACCCGGCGCGGAACTTTGCCCCAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS CAA 72 bp CCCGGCTCGCTGTTAACCGTCAAACCGTCAAAGCATTaGTGGAGGAACCTGGGGCAAAGTTCCGCGCCGGGT +
Preference number: 6 (lower is better)
Translates to: PGSLLTVKPSKH*WRNLGQSSAPG
Trigger: ACCCGGCGCGGAACTTTGCCCCAGGTTCCTCCACAAATGCTTTGACGGTTTGACGGTTAACAGCGAGCCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS CAA 90 bp ACAGCCTTCCCCGGCTCGCTGTTAACCGTCAAACCGTCAAAGCATTaGTGGAGGAACCTGGGGCAAAGTTCCGCGCCGGGTTCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: TAFPGSLLTVKPSKH*WRNLGQSSAPGSPA
Trigger: AGCTGGAGAACCCGGCGCGGAACTTTGCCCCAGGTTCCTCCACAAATGCTTTGACGGTTTGACGGTTAACAGCGAGCCGGGGAAGGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS CCA 72 bp TGCAAGTTTGTGGAGCTGAAACAATCCTCCCACACATaGGGCCTTGGCGCCCCTCCGTCCCTGAGACTTCCA +
Preference number: 6 (lower is better)
Translates to: CKFVELKQSSHT*GLGAPPSLRLP
Trigger: TGGAAGTCTCAGGGACGGAGGGGCGCCAAGGCCCCATGTGTGGGAGGATTGTTTCAGCTCCACAAACTTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 72 bp GCCCAAAGTGAGCCTGGTCTGCTCCAAGGCCTTTTCTaGCACGGCAAATGCCTCCAGCTTCTTCTCCCCATT +
Preference number: 6 (lower is better)
Translates to: AQSEPGLLQGLF*HGKCLQLLLPI
Trigger: AATGGGGAGAAGAAGCTGGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CCA 72 bp GGCTCGCTGTTAACCGTCAAACCGTCAAAGCATTTGTaGAGGAACCTGGGGCAAAGTTCCGCGCCGGGTTCT +
Preference number: 6 (lower is better)
Translates to: GSLLTVKPSKHL*RNLGQSSAPGS
Trigger: AGAACCCGGCGCGGAACTTTGCCCCAGGTTCCTCCACAAATGCTTTGACGGTTTGACGGTTAACAGCGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434835.2
CDS GCA 72 bp CCTGGTCTGCTCCAAGGCCTTTTCTGGCACGGCAAATaGCTCCAGCTTCTTCTCCCCATTGGCCATATAGGA +
Preference number: 6 (lower is better)
Translates to: PGLLQGLFWHGK*LQLLLPIGHIG
Trigger: TCCTATATGGCCAATGGGGAGAAGAAGCTGGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAGCAGACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 72 bp ATGCTAGTCACGTTAATGCCCAAAGTGAGCCTGGTCTaGTCCAAGGCCTTTTCTGGCACGGCAAATGCCTCC +
Preference number: 6 (lower is better)
Translates to: MLVTLMPKVSLV*SKAFSGTANAS
Trigger: GGAGGCATTTGCCGTGCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTTGGGCATTAACGTGACTAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CCA 72 bp CCGTTTCACTGTCACAGGAGCAGATGCCCCCAGTGTTaGGCCTCGGATAATGGTAGAAATTGGAAGTGGCTG +
Preference number: 6 (lower is better)
Translates to: PFHCHRSRCPQC*ASDNGRNWKWL
Trigger: CAGCCACTTCCAATTTCTACCATTATCCGAGGCCCAACACTGGGGGCATCTGCTCCTGTGACAGTGAAACGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS TCA 72 bp AAACAAGTAACCAAAATCCGTGCAAGTTTGTGGAGCTaGAACAATCCTCCCACACATGGGGCCTTGGCGCCC +
Preference number: 6 (lower is better)
Translates to: KQVTKIRASLWS*NNPPTHGALAP
Trigger: GGGCGCCAAGGCCCCATGTGTGGGAGGATTGTTTCAGCTCCACAAACTTGCACGGATTTTGGTTACTTGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 72 bp GCAAGGGCAGCGTTGGCCTCGGCATGTAAGAACACTTaGATTTTGAGTAGCACGCCCACATTTACACCCTTT +
Preference number: 6 (lower is better)
Translates to: ARAALASACKNT*ILSSTPTFTPF
Trigger: AAAGGGTGTAAATGTGGGCGTGCTACTCAAAATCCAAGTGTTCTTACATGCCGAGGCCAACGCTGCCCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 90 bp ATTCACGGGGTTCATTGCAGACACTTCGACACCAATGGCTCCCGGTaGAAAAGAAATTCCGGATCCAACTTAGTAAGCAGCCAGGGAACG +
Preference number: 6 (lower is better)
Translates to: IHGVHCRHFDTNGSR*KRNSGSNLVSSQGT
Trigger: CGTTCCCTGGCTGCTTACTAAGTTGGATCCGGAATTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS GCA 72 bp GGAAATGTAGAGAGCAGTAGCATTCACGGGGTTCATTaGAGACACTTCGACACCAATGGCTCCCGGTTGAAA +
Preference number: 6 (lower is better)
Translates to: GNVESSSIHGVH*RHFDTNGSRLK
Trigger: TTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CCA 72 bp AACTGCAGATATCAATGCCTGTGGAACATAAGTCAGTaGCTACTGTGTCACAAACGGGTGGCAGGCTGTCAG +
Preference number: 6 (lower is better)
Translates to: NCRYQCLWNISQ*LLCHKRVAGCQ
Trigger: CTGACAGCCTGCCACCCGTTTGTGACACAGTAGCCACTGACTTATGTTCCACAGGCATTGATATCTGCAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CCA 72 bp CATTCACGGGGTTCATTGCAGACACTTCGACACCAATaGCTCCCGGTTGAAAAGAAATTCCGGATCCAACTT +
Preference number: 6 (lower is better)
Translates to: HSRGSLQTLRHQ*LPVEKKFRIQL
Trigger: AAGTTGGATCCGGAATTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGAACCCCGTGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CAA 90 bp AATTCCGGATCCAACTTAGTAAGCAGCCAGGGAACGATGGCGAATTaGCAACAATTCGGAAGAAATCAGAGCCGAACCATTGGCCAAACA +
Preference number: 6 (lower is better)
Translates to: NSGSNLVSSQGTMAN*QQFGRNQSRTIGQT
Trigger: TGTTTGGCCAATGGTTCGGCTCTGATTTCTTCCGAATTGTTGCAAATTCGCCATCGTTCCCTGGCTGCTTACTAAGTTGGATCCGGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CAA 90 bp ACATTATGGCTAAGAGACTGGGAAGAAAGCTGCAGAAAAGGTCCATaGGATACAGTGGCTTCCAAGTTCGGCTGCAAATTAGGGCAACAG +
Preference number: 6 (lower is better)
Translates to: TLWLRDWEESCRKGP*DTVASKFGCKLGQQ
Trigger: CTGTTGCCCTAATTTGCAGCCGAACTTGGAAGCCACTGTATCCAATGGACCTTTTCTGCAGCTTTCTTCCCAGTCTCTTAGCCATAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS TCA 72 bp GTTGGGCCTCGGATAATGGTAGAAATTGGAAGTGGCTaGACTTTCTCACTGTCACTCTCTGATCTGGATCGT +
Preference number: 6 (lower is better)
Translates to: VGPRIMVEIGSG*TFSLSLSDLDR
Trigger: ACGATCCAGATCAGAGAGTGACAGTGAGAAAGTTCAGCCACTTCCAATTTCTACCATTATCCGAGGCCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 72 bp AGCCGAACCATTGGCCAAACAAGTAACCAAAATCCGTaGAAGTTTGTGGAGCTGAAACAATCCTCCCACACA +
Preference number: 6 (lower is better)
Translates to: SRTIGQTSNQNP*KFVELKQSSHT
Trigger: TGTGTGGGAGGATTGTTTCAGCTCCACAAACTTGCACGGATTTTGGTTACTTGTTTGGCCAATGGTTCGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CAA 72 bp GTTCATTGCAGACACTTCGACACCAATGGCTCCCGGTaGAAAAGAAATTCCGGATCCAACTTAGTAAGCAGC +
Preference number: 6 (lower is better)
Translates to: VHCRHFDTNGSR*KRNSGSNLVSS
Trigger: GCTGCTTACTAAGTTGGATCCGGAATTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS TCA 72 bp GGTGTTGTGCCTCCATTGGGAACAGTTGCTATAGGTTaGAGAGAAATTTTGCTCTCCCGTTTCACTGTCACA +
Preference number: 6 (lower is better)
Translates to: GVVPPLGTVAIG*REILLSRFTVT
Trigger: TGTGACAGTGAAACGGGAGAGCAAAATTTCTCTTCAACCTATAGCAACTGTTCCCAATGGAGGCACAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 72 bp TCCAACTTAGTAAGCAGCCAGGGAACGATGGCGAATTaGCAACAATTCGGAAGAAATCAGAGCCGAACCATT +
Preference number: 6 (lower is better)
Translates to: SNLVSSQGTMAN*QQFGRNQSRTI
Trigger: AATGGTTCGGCTCTGATTTCTTCCGAATTGTTGCAAATTCGCCATCGTTCCCTGGCTGCTTACTAAGTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS TCA 72 bp CTGAGGGTGCTTTCAGACATTGGAGATAAACTAGCTTaGGGATCAGTTGTGGGTTCTGAGGTTGAAGGTAAA +
Preference number: 6 (lower is better)
Translates to: LRVLSDIGDKLA*GSVVGSEVEGK
Trigger: TTTACCTTCAACCTCAGAACCCACAACTGATCCTCAAGCTAGTTTATCTCCAATGTCTGAAAGCACCCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309993.3
ENST00000434835.2
ENST00000481989.1
ENST00000491050.1
CDS TCA 72 bp GCTATCTTCGGAGTTGCTGCTGTACATGATAACCCATaGAGTGCAGGACTGGTGGACATAAAAACATTATGG +
Preference number: 6 (lower is better)
Translates to: AIFGVAAVHDNP*SAGLVDIKTLW
Trigger: CCATAATGTTTTTATGTCCACCAGTCCTGCACTTCATGGGTTATCATGTACAGCAGCAACTCCGAAGATAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 72 bp AAAGGTCCATTGGATACAGTGGCTTCCAAGTTCGGCTaGAAATTAGGGCAACAGACCTCTGTATTTGAAACA +
Preference number: 6 (lower is better)
Translates to: KGPLDTVASKFG*KLGQQTSVFET
Trigger: TGTTTCAAATACAGAGGTCTGTTGCCCTAATTTGCAGCCGAACTTGGAAGCCACTGTATCCAATGGACCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 90 bp TCTCTGATCTGGATCGTTTTCTATTCAATTTTGCTATCTTCGGAGTaGCTGCTGTACATGATAACCCATGAAGTGCAGGACTGGTGGACA +
Preference number: 6 (lower is better)
Translates to: SLIWIVFYSILLSSE*LLYMITHEVQDWWT
Trigger: TGTCCACCAGTCCTGCACTTCATGGGTTATCATGTACAGCAGCAACTCCGAAGATAGCAAAATTGAATAGAAAACGATCCAGATCAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS GCA 72 bp GCTGATTTTAGGTGTTGTGCCTCCATTGGGAACAGTTaGTATAGGTTGAAGAGAAATTTTGCTCTCCCGTTT +
Preference number: 6 (lower is better)
Translates to: ADFRCCASIGNS*YRLKRNFALPF
Trigger: AAACGGGAGAGCAAAATTTCTCTTCAACCTATAGCAACTGTTCCCAATGGAGGCACAACACCTAAAATCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 72 bp CATTTTCTTGCCTTTACAAGTTTTGCAGACATAATGTaGGCAGGTGGAGTTGGTGGGTGCAATAGGATCTTG +
Preference number: 6 (lower is better)
Translates to: HFLAFTSFADIM*AGGVGGCNRIL
Trigger: CAAGATCCTATTGCACCCACCAACTCCACCTGCCAACATTATGTCTGCAAAACTTGTAAAGGCAAGAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000309993.3
ENST00000434835.2
ENST00000473093.1
ENST00000481989.1
ENST00000491050.1
CDS CCA 72 bp GAAGTGGCTGAACTTTCTCACTGTCACTCTCTGATCTaGATCGTTTTCTATTCAATTTTGCTATCTTCGGAG +
Preference number: 6 (lower is better)
Translates to: EVAELSHCHSLI*IVFYSILLSSE
Trigger: CTCCGAAGATAGCAAAATTGAATAGAAAACGATCCAGATCAGAGAGTGACAGTGAGAAAGTTCAGCCACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 72 bp ATTTGCAACAATTCGGAAGAAATCAGAGCCGAACCATaGGCCAAACAAGTAACCAAAATCCGTGCAAGTTTG +
Preference number: 6 (lower is better)
Translates to: ICNNSEEIRAEP*AKQVTKIRASL
Trigger: CAAACTTGCACGGATTTTGGTTACTTGTTTGGCCAATGGTTCGGCTCTGATTTCTTCCGAATTGTTGCAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309993.3
CDS CAA 72 bp TGGATCGTTTTCTATTCAATTTTGCTATCTTCGGAGTaGCTGCTGTACATGATAACCCATGAAGTGCAGGAC +
Preference number: 6 (lower is better)
Translates to: WIVFYSILLSSE*LLYMITHEVQD
Trigger: GTCCTGCACTTCATGGGTTATCATGTACAGCAGCAACTCCGAAGATAGCAAAATTGAATAGAAAACGATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 90 bp CTTTCTCACTGTCACTCTCTGATCTGGATCGTTTTCTATTCAATTTaGCTATCTTCGGAGTTGCTGCTGTACATGATAACCCATGAAGTG +
Preference number: 6 (lower is better)
Translates to: LSHCHSLIWIVFYSI*LSSELLLYMITHEV
Trigger: CACTTCATGGGTTATCATGTACAGCAGCAACTCCGAAGATAGCAAAATTGAATAGAAAACGATCCAGATCAGAGAGTGACAGTGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2
CDS CAA 72 bp TGTCACTCTCTGATCTGGATCGTTTTCTATTCAATTTaGCTATCTTCGGAGTTGCTGCTGTACATGATAACC +
Preference number: 6 (lower is better)
Translates to: CHSLIWIVFYSI*LSSELLLYMIT
Trigger: GGTTATCATGTACAGCAGCAACTCCGAAGATAGCAAAATTGAATAGAAAACGATCCAGATCAGAGAGTGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309993.3
ENST00000434835.2