Pregenerated sensors for MSGN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000151379Ensembl transcript IDs: ENST00000281047.4
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTGTCTTAACTTAGCCTGTCTGCCTGTGACTTTCCATTTATCATaGCACCAGTGCCTTCCGCATTTAAGTGATTTTGGTCCCTGCAAC | + |
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Preference number: 1 (lower is better) Translates to: HCLNLACLPVTFHLS*HQCLPHLSDFGPCN Trigger: GTTGCAGGGACCAAAATCACTTAAATGCGGAAGGCACTGGTGTCATGATAAATGGAAAGTCACAGGCAGACAGGCTAAGTTAAGACAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR TCA 90 bp | CTCATCTGGCAGGTAAGTGTTCTGGTGGGTCCAACAGGTTACATGTaGATTCCCTTAGGGTTTTTCAGATCACAAGATTATCAGGCTTAC | + |
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Preference number: 1 (lower is better) Translates to: LIWQVSVLVGPTGYM*IPLGFFRSQDYQAY Trigger: GTAAGCCTGATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCACATGTAACCTGTTGGACCCACCAGAACACTTACCTGCCAGATGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR-3UTR CCA 90 bp | TCCCTGCAACAGCATGATTTCAGTCAAACACAAACACACACACATATACACACGTCCTGCTCAGGAGGCTaGAACCGGTCAGTTTCCCCG | + |
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Preference number: 2 (lower is better) Translates to: SLQQHDFSQTQTHTHIHTSCSGG*NRSVSP Trigger: CGGGGAAACTGACCGGTTCCAGCCTCCTGAGCAGGA...CGTGTGTATATGTGTGTGTGTTTGTGTTTGACTGAAATCATGCTGTTGCAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR-3UTR GCA 90 bp | CCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACAGAAGAAAACTCCTCTACTCCTaGTCAGGAGGCTGGAACCGG | + |
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Preference number: 2 (lower is better) Translates to: PDITLDPIQNTGFVSNRRKLLYS*SGGWNR Trigger: CCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTT...TCTTCTGTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR-3UTR CCA 90 bp | CCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACAGAAGAAAGTCTCTGCTCATCTaGCAGGTAAGTGTTCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: PDITLDPIQNTGFVSNRRKSLLI*QVSVLV Trigger: CACCAGAACACTTACCTGCCAGATGAGCAGAGACTT...TCTTCTGTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR CAA 90 bp | CAAGATTATCAGGCTTACTACATAAAAATCACTCTACGCCGATCATaGTTCAATAAGATATCCAGGTCTTCAAAACTCCTCTACTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: QDYQAYYIKITLRRS*FNKISRSSKLLYSC Trigger: GCAGGAGTAGAGGAGTTTTGAAGACCTGGATATCTTATTGAACAATGATCGGCGTAGAGTGATTTTTATGTAGTAAGCCTGATAATCTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR-3UTR TCA 90 bp | TTAGCAACAGAAGAAAAGGTCTCAACGCCAAAATGGCAAGAGATTAACACTTTTCCAACAGGTTACATGTaGATTCCCTTAGGGTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: LATEEKVSTPKWQEINTFPTGYM*IPLGFF Trigger: GAAAAACCCTAAGGGAATTCACATGTAACCTGTTGG...AAAAGTGTTAATCTCTTGCCATTTTGGCGTTGAGACCTTTTCTTCTGTTGCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR-3UTR TCA 90 bp | CCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACAGAAGACCCTTTAAAATACCTTaGACAGACAGAGAAGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: PDITLDPIQNTGFVSNRRPFKIP*TDREGQ Trigger: TTGCCCTTCTCTGTCTGTTCAAGGTATTTTAAAGGG...TCTTCTGTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR TCA 72 bp | CCATTTATCATGACACCAGTGCCTTCCGCATTTAAGTaGTTTTGGTCCCTGCAACAGCATGATTTCAGTCAA | + |
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Preference number: 3 (lower is better) Translates to: PFIMTPVPSAFK*FWSLQQHDFSQ Trigger: TTGACTGAAATCATGCTGTTGCAGGGACCAAAATCACTTAAATGCGGAAGGCACTGGTGTCATGATAAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR TCA 72 bp | CAGGTAAGTGTTCTGGTGGGTCCAACAGGTTACATGTaGATTCCCTTAGGGTTTTTCAGATCACAAGATTAT | + |
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Preference number: 3 (lower is better) Translates to: QVSVLVGPTGYM*IPLGFFRSQDY Trigger: ATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCACATGTAACCTGTTGGACCCACCAGAACACTTACCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR-3UTR CAA 90 bp | GTGAATTCCCTTAGGGTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAACTCTACGCCGATCATaGTTCAATAAGATATCCAGG | + |
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Preference number: 3 (lower is better) Translates to: VNSLRVFQITRLSGLLHKTLRRS*FNKISR Trigger: CCTGGATATCTTATTGAACAATGATCGGCGTAGAGT...TTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | GGCTCTGGCTTTTGGAATCTTCACTGTCTTAACTTAGCCTGTCTGCCTGTGACTCGCTGCCCCCACTGCTaGCCCCGCCGTGCTCACAGG | + |
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Preference number: 4 (lower is better) Translates to: GSGFWNLHCLNLACLPVTRCPHC*PRRAHR Trigger: CCTGTGAGCACGGCGGGGCCAGCAGTGGGGGCAGCG...AGTCACAGGCAGACAGGCTAAGTTAAGACAGTGAAGATTCCAAAAGCCAGAGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | TCCAGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTGGAACCGGTCAGTTCAGCTCAAAGGGCCCTaGCCTGTCCTTCCAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: SRSSKLLYSCSGGWNRSVQLKGP*PVLPVP Trigger: TGGGACTGGAAGGACAGGGCAGGGCCCTTTGAGCTG...AACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | TCCAGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTGGAACCGGTCAGTTTCCTGCTCAGGAGGCTaGAACCGGTCAGTTTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: SRSSKLLYSCSGGWNRSVSCSGG*NRSVSP Trigger: CGGGGAAACTGACCGGTTCCAGCCTCCTGAGCAGGA...AACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR CAA 72 bp | CCTCCCCGTACCCTCCTTCCCTGTCACACAAGCTGTTaGCCTGTGAAGAGGAGGCTCTGGCTTTTGGAATCT | + |
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Preference number: 4 (lower is better) Translates to: PPRTLLPCHTSC*PVKRRLWLLES Trigger: AGATTCCAAAAGCCAGAGCCTCCTCTTCACAGGCAAACAGCTTGTGTGACAGGGAAGGAGGGTACGGGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | AAAGTCTCTGCTCATCTGGCAGGTAAGTGTTCTGGTGGGTCCAACAGGTTACATAGCCATCCTCGAGGCTaGGGAAAGTCTCGCGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: KVSAHLAGKCSGGSNRLHSHPRG*GKSRAG Trigger: ACCTGCGCGAGACTTTCCTCAGCCTCGAGGATGGCT...ATGTAACCTGTTGGACCCACCAGAACACTTACCTGCCAGATGAGCAGAGACTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | GTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAAATCACTCTACGCCGCACTGCAGCCTTCGCTaGCCCCACTGCTGGCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: VFQITRLSGLLHKNHSTPHCSLR*PHCWPR Trigger: GCGGGGCCAGCAGTGGGGGCAGCGAAGGCTGCAGTG...CGGCGTAGAGTGATTTTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | TACCTTGAACAGACAGAGAAGGGCAAAATAATCTGTCTGTTTGCAAAGGATGAGTGCCCTTCTGGGCCTTaGGGCCACCACCGCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: YLEQTEKGKIICLFAKDECPSGP*GHHRPE Trigger: TTCAGGGCGGTGGTGGCCCCAAGGCCCAGAAGGGCA...CTCATCCTTTGCAAACAGACAGATTATTTTGCCCTTCTCTGTCTGTTCAAGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | TCCAGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTGGAACCGGTCAGTTACTTTCCATTTATCATaGCACCAGTGCCTTCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: SRSSKLLYSCSGGWNRSVTFHLS*HQCLPH Trigger: ATGCGGAAGGCACTGGTGTCATGATAAATGGAAAGT...AACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | GTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAAATCACTCTACGCCGTGGCCCCACCGACACTaGAGCCTTCGCTGCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: VFQITRLSGLLHKNHSTPWPHRH*SLRCPH Trigger: GTGGGGGCAGCGAAGGCTGCAGTGTCGGTGGGGCCA...CGGCGTAGAGTGATTTTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | GTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAAATCACTCTACGCCGGGAGCTCACGCGCTCTaGGCTCTGGGCTCTCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: VFQITRLSGLLHKNHSTPGAHAL*ALGSLP Trigger: CGGCAGAGAGCCCAGAGCCCAGAGCGCGTGAGCTCC...CGGCGTAGAGTGATTTTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | AAGAATCCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACGGGCCACCACCGCCCTaGAGGTGGGTGGGCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: KNPDITLDPIQNTGFVSNGPPPP*RWVGWK Trigger: TTTCCAGCCCACCCACCTTCAGGGCGGTGGTGGCCC...GTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGGATTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | CCAGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTGGAACCGGTCAGTTTCCCTTTAAAATACCTTaGACAGACAGAGAAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: PGLQNSSTPAQEAGTGQFPFKIP*TDREGQ Trigger: TTGCCCTTCTCTGTCTGTTCAAGGTATTTTAAAGGG...AAACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | CATGTGAATTCCCTTAGGGTTTTTCAGATCACAAGATTATCAGGCTTACTACATGCTTCTCCCTCTCGCTaGCTTTCCGCCTCCGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HVNSLRVFQITRLSGLLHASPSR*LSASAG Trigger: TCCAGCGGAGGCGGAAAGCCAGCGAGAGGGAGAAGC...ATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCACATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | TCCCTGCAACAGCATGATTTCAGTCAAACACAAACACACACACATATACACACGCTGGCTGTAGACAGGTaGCAGGTAATTCCGGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SLQQHDFSQTQTHTHIHTLAVDR*QVIPEG Trigger: ACCCTCCGGAATTACCTGCCACCTGTCTACAGCCAG...CGTGTGTATATGTGTGTGTGTTTGTGTTTGACTGAAATCATGCTGTTGCAGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | AGGAGCACTAAAGCCCTTTACTTGGCACAAATCTTTCTAAATAAGAATCCAGATCGCGCAGGTTGTCCATaGCTGCGAGACAGCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RSTKALYLAQIFLNKNPDRAGCP*LRDSCR Trigger: TCTGCAGCTGTCTCGCAGGCATGGACAACCTGCGCG...ATCTGGATTCTTATTTAGAAAGATTTGTGCCAAGTAAAGGGCTTTAGTGCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | TACCTTGAACAGACAGAGAAGGGCAAAATAATCTGTCTGTTTGCAAAGGATGAGAAACTCCTCTACTCCTaGTCAGGAGGCTGGAACCGG | + |
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Preference number: 4 (lower is better) Translates to: YLEQTEKGKIICLFAKDEKLLYS*SGGWNR Trigger: CCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTT...CTCATCCTTTGCAAACAGACAGATTATTTTGCCCTTCTCTGTCTGTTCAAGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | AACAGCATGATTTCAGTCAAACACAAACACACACACATATACACACGAAATGAAGTCAGTTTCCCCGGATaGAGCTCACGCGCTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: NSMISVKHKHTHIYTRNEVSFPG*SSRALG Trigger: GCCCAGAGCGCGTGAGCTCCATCCGGGGAAACTGAC...TTCATTTCGTGTGTATATGTGTGTGTGTTTGTGTTTGACTGAAATCATGCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | CAGTGCCTTCCGCATTTAAGTGATTTTGGTCCCTGCAACAGCATGATTTCAGTCAAGTCTCTGCTCATCTaGCAGGTAAGTGTTCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QCLPHLSDFGPCNSMISVKSLLI*QVSVLV Trigger: CACCAGAACACTTACCTGCCAGATGAGCAGAGACTT...GACTGAAATCATGCTGTTGCAGGGACCAAAATCACTTAAATGCGGAAGGCACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | TACCTTGAACAGACAGAGAAGGGCAAAATAATCTGTCTGTTTGCAAAGGATGAGTCTGTTTGCAAAGGATaGGCCTCCCAGATGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: YLEQTEKGKIICLFAKDESVCKG*ASQMGG Trigger: TCCACCCATCTGGGAGGCTCATCCTTTGCAAACAGA...CTCATCCTTTGCAAACAGACAGATTATTTTGCCCTTCTCTGTCTGTTCAAGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | CAGTCAAACACAAACACACACACATATACACACGAAATGAAAACAGGAGCACTACAAGCTGTTTGCCTGTaGAGAGGAGGCTCTGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: QSNTNTHTYTHEMKTGALQAVCL*RGGSGF Trigger: AAAGCCAGAGCCTCCTCTTCACAGGCAAACAGCTTG...TAGTGCTCCTGTTTTCATTTCGTGTGTATATGTGTGTGTGTTTGTGTTTGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | AAGAATCCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACTGCCTGCGAGACAGCTaGAGAAGGAATGGCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KNPDITLDPIQNTGFVSNCLRDS*RRNGSL Trigger: CAGGGAGCCATTCCTTCTGCAGCTGTCTCGCAGGCA...GTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGGATTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | CCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACAGAAGACAGGTTGTCCATGCCTaGGAGACAGCTGCAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: PDITLDPIQNTGFVSNRRQVVHA*ETAAEG Trigger: TCCTTCTGCAGCTGTCTCGCAGGCATGGACAACCTG...TCTTCTGTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | GATTATCAGGCTTACTACATAAAAATCACTCTACGCCGATCATTGTTCAATAAGGGTGTGCAGGGCATCTaGCAAGGTCCTCATCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: DYQAYYIKITLRRSLFNKGVQGI*QGPHPE Trigger: CTCAGGATGAGGACCTTGGCAGATGCCCTGCACACC...CTTATTGAACAATGATCGGCGTAGAGTGATTTTTATGTAGTAAGCCTGATAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | TTTCAGTCAAACACAAACACACACACATATACACACGAAATGAAAACAGGAGCAGCTTTCCGCCTCCGCTaGACAGACATCCTGACTTTG | + |
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Preference number: 4 (lower is better) Translates to: FQSNTNTHTYTHEMKTGAAFRLR*TDILTL Trigger: CAAAGTCAGGATGTCTGTCCAGCGGAGGCGGAAAGC...TGCTCCTGTTTTCATTTCGTGTGTATATGTGTGTGTGTTTGTGTTTGACTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | GTGAATTCCCTTAGGGTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAATAGGATTCCAGCGATaGAGCCGGGGAAAGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VNSLRVFQITRLSGLLHKIGFQR*SRGKAL Trigger: CAGAGCCTTTCCCCGGCTCCATCGCTGGAATCCTAT...TTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | ATTTCAGTCAAACACAAACACACACACATATACACACGAAATGAAAACAGGAGCCGCCCTGAAGGTGGGTaGGCTGGAAAGCTAACATAT | + |
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Preference number: 4 (lower is better) Translates to: ISVKHKHTHIYTRNENRSRPEGG*AGKLTY Trigger: ATATGTTAGCTTTCCAGCCCACCCACCTTCAGGGCG...GCTCCTGTTTTCATTTCGTGTGTATATGTGTGTGTGTTTGTGTTTGACTGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | AGGAGCACTAAAGCCCTTTACTTGGCACAAATCTTTCTAAATAAGAATCCAGATGTGTACTTGAGTGTCTaGATCTTGGTGAGAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSTKALYLAQIFLNKNPDVYLSV*ILVRGW Trigger: CCAGCCTCTCACCAAGATCCAGACACTCAAGTACAC...ATCTGGATTCTTATTTAGAAAGATTTGTGCCAAGTAAAGGGCTTTAGTGCTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | TACCTTGAACAGACAGAGAAGGGCAAAATAATCTGTCTGTTTGCAAAGGATGAGGGAGGCTCTGGCTTTTaGAATCTTCACTGTCTTAAC | + |
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Preference number: 4 (lower is better) Translates to: YLEQTEKGKIICLFAKDEGGSGF*NLHCLN Trigger: GTTAAGACAGTGAAGATTCCAAAAGCCAGAGCCTCC...CTCATCCTTTGCAAACAGACAGATTATTTTGCCCTTCTCTGTCTGTTCAAGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | CATGTGAATTCCCTTAGGGTTTTTCAGATCACAAGATTATCAGGCTTACTACATCCTTCCGCATTTAAGTaGTTTTGGTCCCTGCAACAG | + |
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Preference number: 4 (lower is better) Translates to: HVNSLRVFQITRLSGLLHPSAFK*FWSLQQ Trigger: CTGTTGCAGGGACCAAAATCACTTAAATGCGGAAGG...ATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCACATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | ATTTCAGTCAAACACAAACACACACACATATACACACGAAATGAAAACAGGAGCGTGAAGAGGAGGCTCTaGCTTTTGGAATCTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: ISVKHKHTHIYTRNENRSVKRRL*LLESSL Trigger: CAGTGAAGATTCCAAAAGCCAGAGCCTCCTCTTCAC...GCTCCTGTTTTCATTTCGTGTGTATATGTGTGTGTGTTTGTGTTTGACTGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR TCA 90 bp | AGGAGCACTAAAGCCCTTTACTTGGCACAAATCTTTCTAAATAAGAATCCAGATGTCCCTGCAACAGCATaGTTTCAGTCAAACACAAAC | + |
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Preference number: 4 (lower is better) Translates to: RSTKALYLAQIFLNKNPDVPATA*FQSNTN Trigger: GTTTGTGTTTGACTGAAATCATGCTGTTGCAGGGAC...ATCTGGATTCTTATTTAGAAAGATTTGTGCCAAGTAAAGGGCTTTAGTGCTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| 3UTR CAA 72 bp | CAGGCTTACTACATAAAAATCACTCTACGCCGATCATaGTTCAATAAGATATCCAGGTCTTCAAAACTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QAYYIKITLRRS*FNKISRSSKLL Trigger: GAGGAGTTTTGAAGACCTGGATATCTTATTGAACAATGATCGGCGTAGAGTGATTTTTATGTAGTAAGCCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR GCA 90 bp | GTGAATTCCCTTAGGGTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAAGTGATTTTGGTCCCTaGAACAGCATGATTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: VNSLRVFQITRLSGLLHKSDFGP*NSMISV Trigger: GACTGAAATCATGCTGTTGCAGGGACCAAAATCACT...TTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAACCCTAAGGGAATTCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CCA 90 bp | CAGTCAAACACAAACACACACACATATACACACGAAATGAAAACAGGAGCACTAATCCAGATATCACACTaGATCCTATACAAAATACAG | + |
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Preference number: 4 (lower is better) Translates to: QSNTNTHTYTHEMKTGALIQISH*ILYKIQ Trigger: CTGTATTTTGTATAGGATCCAGTGTGATATCTGGAT...TAGTGCTCCTGTTTTCATTTCGTGTGTATATGTGTGTGTGTTTGTGTTTGACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS TCA 90 bp | GCTTCTCCCTCTCGCTGGCTTTCCGCCTCCGCTGGACAGACATCCTaGCTTTGGTGCCCTTCTGGGCCTTGGGGCCACCACCGCCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: ASPSRWLSASAGQTS*LWCPSGPWGHHRPE Trigger: TTCAGGGCGGTGGTGGCCCCAAGGCCCAGAAGGGCACCAAAGTCAGGATGTCTGTCCAGCGGAGGCGGAAAGCCAGCGAGAGGGAGAAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CCA 90 bp | GGAGGCTGGAACCGGTCAGTTTCCCCGGATGGAGCTCACGCGCTCTaGGCTCTGGGCTCTCTGCCGCGGTTAAGGAGGTCTGTGAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: GGWNRSVSPDGAHAL*ALGSLPRLRRSVSS Trigger: GGAACTCACAGACCTCCTTAACCGCGGCAGAGAGCCCAGAGCCCAGAGCGCGTGAGCTCCATCCGGGGAAACTGACCGGTTCCAGCCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CCA 90 bp | CCTCTACTCCTGCTCAGGAGGCTGGAACCGGTCAGTTTCCCCGGATaGAGCTCACGCGCTCTGGGCTCTGGGCTCTCTGCCGCGGTTAAG | + |
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Preference number: 5 (lower is better) Translates to: PLLLLRRLEPVSFPG*SSRALGSGLSAAVK Trigger: CTTAACCGCGGCAGAGAGCCCAGAGCCCAGAGCGCGTGAGCTCCATCCGGGGAAACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS GCA 90 bp | GGAAAGGCTCTGAGAGGGGGAGGCCTGATTCAGCTCAAAGGGCCCTaGCCTGTCCTTCCAGTCCCAGGAAGACAGCAGGCCAGGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: GKALRGGGLIQLKGP*PVLPVPGRQQARAV Trigger: GACAGCCCTGGCCTGCTGTCTTCCTGGGACTGGAAGGACAGGGCAGGGCCCTTTGAGCTGAATCAGGCCTCCCCCTCTCAGAGCCTTTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS GCA 90 bp | GCCATCCTCGAGGCTGAGGAAAGTCTCGCGCAGGTTGTCCATGCCTaGGAGACAGCTGCAGAAGGAATGGCTCCCTGGCAAGTGAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: AILEAEESLAQVVHA*ETAAEGMAPWQVRK Trigger: CTTTCTCACTTGCCAGGGAGCCATTCCTTCTGCAGCTGTCTCGCAGGCATGGACAACCTGCGCGAGACTTTCCTCAGCCTCGAGGATGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CCA 90 bp | AAGATATCCAGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTaGAACCGGTCAGTTTCCCCGGATGGAGCTCACGCGCTCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: KISRSSKLLYSCSGG*NRSVSPDGAHALWA Trigger: AGCCCAGAGCGCGTGAGCTCCATCCGGGGAAACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCTGGATATCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | AAAGTCTCTGCTCATCTGGCAGGTAAGTGTTCTGGTGGGTCCAACAGGTTACATAAAGTCTCGCGCAGGTaGTCCATGCCTGCGAGACAG | + |
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Preference number: 5 (lower is better) Translates to: KVSAHLAGKCSGGSNRLHKVSRR*SMPARQ Trigger: CTGTCTCGCAGGCATGGACAACCTGCGCGAGACTTT...ATGTAACCTGTTGGACCCACCAGAACACTTACCTGCCAGATGAGCAGAGACTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | AAGATATCCAGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTGGAACCGGACTCTACGCCGATCATaGTTCAATAAGATATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KISRSSKLLYSCSGGWNRTLRRS*FNKISR Trigger: CCTGGATATCTTATTGAACAATGATCGGCGTAGAGT...CCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCTGGATATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | TACCTTGAACAGACAGAGAAGGGCAAAATAATCTGTCTGTTTGCAAAGGATGAGACAGACATCCTGACTTaGGTGCCCTTCTGGGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: YLEQTEKGKIICLFAKDETDILT*VPFWAL Trigger: CAAGGCCCAGAAGGGCACCAAAGTCAGGATGTCTGT...CTCATCCTTTGCAAACAGACAGATTATTTTGCCCTTCTCTGTCTGTTCAAGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | GTTTTTCAGATCACAAGATTATCAGGCTTACTACATAAAAATCACTCTACGCCGTTGAGTGTCTGGATCTaGGTGAGAGGCTGGCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: VFQITRLSGLLHKNHSTPLSVWI*VRGWPL Trigger: GAGAGGCCAGCCTCTCACCAAGATCCAGACACTCAA...CGGCGTAGAGTGATTTTTATGTAGTAAGCCTGATAATCTTGTGATCTGAAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | TTAGCAACAGAAGAAAAGGTCTCAACGCCAAAATGGCAAGAGATTAACACTTTTTGTCACACAAGCTGTTaGCCTGTGAAGAGGAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: LATEEKVSTPKWQEINTFCHTSC*PVKRRL Trigger: GAGCCTCCTCTTCACAGGCAAACAGCTTGTGTGACA...AAAAGTGTTAATCTCTTGCCATTTTGGCGTTGAGACCTTTTCTTCTGTTGCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | CCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACAGAAGAAGTTCCCCGATGTACTaGATGGTGTACTTGAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: PDITLDPIQNTGFVSNRRSSPMY*MVYLSV Trigger: GACACTCAAGTACACCATCAAGTACATCGGGGAACT...TCTTCTGTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS-3UTR CAA 90 bp | CCAGATATCACACTGGATCCTATACAAAATACAGGTTTTGTTAGCAACAGAAGATACTTGATGGTGTACTaGAGTGTCTGGATCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: PDITLDPIQNTGFVSNRRYLMVY*SVWILV Trigger: CACCAAGATCCAGACACTCAAGTACACCATCAAGTA...TCTTCTGTTGCTAACAAAACCTGTATTTTGTATAGGATCCAGTGTGATATCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CCA 72 bp | CTGCTCAGGAGGCTGGAACCGGTCAGTTTCCCCGGATaGAGCTCACGCGCTCTGGGCTCTGGGCTCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LLRRLEPVSFPG*SSRALGSGLSA Trigger: GGCAGAGAGCCCAGAGCCCAGAGCGCGTGAGCTCCATCCGGGGAAACTGACCGGTTCCAGCCTCCTGAGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS GCA 72 bp | CTGAGAGGGGGAGGCCTGATTCAGCTCAAAGGGCCCTaGCCTGTCCTTCCAGTCCCAGGAAGACAGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: LRGGGLIQLKGP*PVLPVPGRQQA Trigger: GGCCTGCTGTCTTCCTGGGACTGGAAGGACAGGGCAGGGCCCTTTGAGCTGAATCAGGCCTCCCCCTCTCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CAA 90 bp | GAGGAGCCCAAGCCATCCTCGAGGCTGAGGAAAGTCTCGCGCAGGTaGTCCATGCCTGCGAGACAGCTGCAGAAGGAATGGCTCCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: EEPKPSSRLRKVSRR*SMPARQLQKEWLPG Trigger: GCCAGGGAGCCATTCCTTCTGCAGCTGTCTCGCAGGCATGGACAACCTGCGCGAGACTTTCCTCAGCCTCGAGGATGGCTTGGGCTCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CCA 72 bp | CTGAGCTTCTCCCTCTCGCTGGCTTTCCGCCTCCGCTaGACAGACATCCTGACTTTGGTGCCCTTCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LSFSLSLAFRLR*TDILTLVPFWA Trigger: GGCCCAGAAGGGCACCAAAGTCAGGATGTCTGTCCAGCGGAGGCGGAAAGCCAGCGAGAGGGAGAAGCTCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS GCA 72 bp | GAGGCTGAGGAAAGTCTCGCGCAGGTTGTCCATGCCTaGGAGACAGCTGCAGAAGGAATGGCTCCCTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: EAEESLAQVVHA*ETAAEGMAPWQ Trigger: TTGCCAGGGAGCCATTCCTTCTGCAGCTGTCTCGCAGGCATGGACAACCTGCGCGAGACTTTCCTCAGCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CCA 72 bp | AGGTCTTCAAAACTCCTCTACTCCTGCTCAGGAGGCTaGAACCGGTCAGTTTCCCCGGATGGAGCTCACGCG | + |
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Preference number: 6 (lower is better) Translates to: RSSKLLYSCSGG*NRSVSPDGAHA Trigger: CGCGTGAGCTCCATCCGGGGAAACTGACCGGTTCCAGCCTCCTGAGCAGGAGTAGAGGAGTTTTGAAGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS CAA 72 bp | AAGCCATCCTCGAGGCTGAGGAAAGTCTCGCGCAGGTaGTCCATGCCTGCGAGACAGCTGCAGAAGGAATGG | + |
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Preference number: 6 (lower is better) Translates to: KPSSRLRKVSRR*SMPARQLQKEW Trigger: CCATTCCTTCTGCAGCTGTCTCGCAGGCATGGACAACCTGCGCGAGACTTTCCTCAGCCTCGAGGATGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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| CDS GCA 72 bp | AAGTCTCGCGCAGGTTGTCCATGCCTGCGAGACAGCTaGAGAAGGAATGGCTCCCTGGCAAGTGAGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: KSRAGCPCLRDS*RRNGSLASEKE Trigger: TTCTTTCTCACTTGCCAGGGAGCCATTCCTTCTGCAGCTGTCTCGCAGGCATGGACAACCTGCGCGAGACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281047.4 |
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