Pregenerated sensors for MRPS33 (Homo sapiens)
Ensembl gene IDs: ENSG00000090263Ensembl transcript IDs: ENST00000324787.10, ENST00000393008.7, ENST00000472343.5, ENST00000484502.1, ENST00000485202.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TATCATTTCTTTAGGGAAGCTTTCTTTAAACTCCCTAATGTGATTTaGGCTTCTGGCTATCTCTCTCTGCATTCATCCATCCATCCATGC | + |
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Preference number: 1 (lower is better) Translates to: YHFFREAFFKLPNVI*ASGYLSLHSSIHPC Trigger: GCATGGATGGATGGATGAATGCAGAGAGAGATAGCCAGAAGCCCAAATCACATTAGGGAGTTTAAAGAAAGCTTCCCTAAAGAAATGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGATCTCTTGACCTTGTaGTCCACCCACCTCGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPDLLTL*STHLGL Trigger: GAGGCCGAGGTGGGTGGATCACAAGGTCAAGAGATC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCAGGCTGGAGTGCAGTaGCGTGATCTCAACTCACTG | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPQAGVQ*RDLNSL Trigger: CAGTGAGTTGAGATCACGCCACTGCACTCCAGCCTG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTCTTCTCTCCGCCACTaGGGAAGAAAGTCTCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPSSLRH*GRKSPS Trigger: AGAGGGAGACTTTCTTCCTCAGTGGCGGAGAGAAGA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTTCAAGCGATTCTCCTaGCTCAGCATCCCGAGTAGC | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPFKRFS*LSIPSS Trigger: GCTACTCGGGATGCTGAGGCAGGAGAATCGCTTGAA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGTGATCTCAACTCACTaGAACCTTTGCCTCCCGGGT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPVISTH*NLCLPG Trigger: ACCCGGGAGGCAAAGGTTGCAGTGAGTTGAGATCAC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGGGGTTTCACCATGTTaGCCAAAATGGTCTCGATCT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPGVSPC*PKWSRS Trigger: AGATCGAGACCATTTTGGCCAACATGGTGAAACCCC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCTGGCTATCTCTCTCTaGATTCATCCATCCATCCAT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPLAISL*IHPSIH Trigger: ATGGATGGATGGATGAATGCAGAGAGAGATAGCCAG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCCATGTTGGCCAAAATaGTCTCGATCTCTTGACCTT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPPCWPK*SRSLDL Trigger: AAGGTCAAGAGATCGAGACCATTTTGGCCAACATGG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTGCATTTTTAGTAGGTaGGGTTTCACCATGTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPCIFSR*GFTMLA Trigger: GGCCAACATGGTGAAACCCCACCTACTAAAAATGCA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTTAAACTCCCTAATGTaGTTTGGGCTTCTGGCTATC | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPLNSLM*FGLLAI Trigger: GATAGCCAGAAGCCCAAATCACATTAGGGAGTTTAA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTCATCCATCCATCCATaGTCTTATAGAAGTCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPSSIHP*SYRSLA Trigger: AGCCAGACTTCTATAAGAGCATGGATGGATGGATGA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCAGACTGAAACTTACATaGGGTAGGGAGTATTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPRLKLT*GREYFS Trigger: AGAGAAATACTCCCTACCTCATGTAAGTTTCAGTCT...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGTGAGCAACAGCGCCTaGCTTAAATATCATTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: TISSYLRALQIVLSASNPVSNSA*LKYHFF Trigger: AAAGAAATGATATTTAAGCCAGGCGCTGTTGCTCAC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR GCA 72 bp | TCCTCTACAACTATCACGTGTCGAGCACATGGCAGGTaGTCAGTAAAAAGTTCTAAATGGGCTGGGTGTGGT | + |
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Preference number: 3 (lower is better) Translates to: SSTTITCRAHGR*SVKSSKWAGCG Trigger: ACCACACCCAGCCCATTTAGAACTTTTTACTGAGCACCTGCCATGTGCTCGACACGTGATAGTTGTAGAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CAA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCAGGGCCCCAATATCTaGTACAGAGCAGGTATTCAA | + |
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Preference number: 3 (lower is better) Translates to: TISSYLRALQIVLSASNPQGPNI*YRAGIQ Trigger: TTGAATACCTGCTCTGTACAAGATATTGGGGCCCTG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR CCA 72 bp | TTTAGGGAAGCTTTCTTTAAACTCCCTAATGTGATTTaGGCTTCTGGCTATCTCTCTCTGCATTCATCCATC | + |
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Preference number: 3 (lower is better) Translates to: FREAFFKLPNVI*ASGYLSLHSSI Trigger: GATGGATGAATGCAGAGAGAGATAGCCAGAAGCCCAAATCACATTAGGGAGTTTAAAGAAAGCTTCCCTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR-3UTR CAA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCTCACCATTTTCCTTTaGGCAACCTCTTATTTATTC | + |
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Preference number: 3 (lower is better) Translates to: TISSYLRALQIVLSASNPLTIFL*ATSYLF Trigger: GAATAAATAAGAGGTTGCCAAAAGGAAAATGGTGAG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR TCA 72 bp | ATTTCTTTAGGGAAGCTTTCTTTAAACTCCCTAATGTaGTTTGGGCTTCTGGCTATCTCTCTCTGCATTCAT | + |
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Preference number: 3 (lower is better) Translates to: ISLGKLSLNSLM*FGLLAISLCIH Trigger: ATGAATGCAGAGAGAGATAGCCAGAAGCCCAAATCACATTAGGGAGTTTAAAGAAAGCTTCCCTAAAGAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCAAGCTCCGCCTCCCTaGCATTCTCCTGCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPQAPPP*HSPASA Trigger: GGCTGAGGCAGGAGAATGGCAGGGAGGCGGAGCTTG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGCTGAGGCAGGAGAATaGCGTGAACCCGGGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPAEAGE*REPGRW Trigger: CCACCTCCCGGGTTCACGCCATTCTCCTGCCTCAGC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTCCCTGCCATTCTCCTaGCTCAGCCTCCCAAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPSLPFS*LSLPSS Trigger: GCTACTTGGGAGGCTGAGGCAGGAGAATGGCAGGGA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR TCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCATCGGAGCGTCTGCATaGGTTCAGCGTAAGTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPIGASA*VQRKCG Trigger: ACCACACTTACGCTGAACTCATGCAGACGCTCCGAT...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTTTGGGAGTCTGAGGTaGGTGGATCAGGAGGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPFGSLR*VDQEVK Trigger: CTTGACCTCCTGATCCACCCACCTCAGACTCCCAAA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTCATCCACCTACACCTaGCTCAGCTGCATTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPSSTYT*LSCIGQ Trigger: TTGGCCAATGCAGCTGAGCCAGGTGTAGGTGGATGA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTTCCCTGTCAATCATTaGCAAGGCTCACTGCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPFPVNH*QGSLQG Trigger: ACCCTGCAGTGAGCCTTGGCAATGATTGACAGGGAA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCTCAGCTCAACATCCTaGGGTAGTCATCCACCTACA | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPLSSTS*GSHPPT Trigger: TGTAGGTGGATGACTACCCCAGGATGTTGAGCTGAG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR TCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCATGGTCTATGCACACTaGTCCCCACAGGTTAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPMVYAH*SPQVRK Trigger: CTTTCTAACCTGTGGGGATCAGTGTGCATAGACCAT...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGCTGCCACAGAAAATTaGGCTAGTAAGACACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPAATEN*ASKTQQ Trigger: CTGCTGTGTCTTACTAGCGCAATTTTCTGTGGCAGC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGGAGATACGTGTCAATaGTGCCACAGAAAATTGCGC | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPGDTCQ*CHRKLR Trigger: GCGCAATTTTCTGTGGCAGCATTGACACGTATCTCC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCTGGCTCAGCTGCATTaGCCAAGAATAACAGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPLAQLH*PRITVH Trigger: ATGCACTGTTATTCTTGGCCAATGCAGCTGAGCCAG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCGCAAATAGTACTCTCTaGCTCAAACCCCTTTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPANSTL*LKPLSH Trigger: GTGAGAAAGGGGTTTGAGGCAGAGAGTACTATTTGC...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTTGATACCTTCCAGCTaGTCCATCGTACTTCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPLIPSS*SIVLLY Trigger: GTACAGAAGTACGATGGACCAGCTGGAAGGTATCAA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCGAGCACATGGCAGGTaGTCAGTAAAAAGTTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPRAHGR*SVKSSK Trigger: TTTAGAACTTTTTACTGAGCACCTGCCATGTGCTCG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR GCA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCTGTGGCTGGAGTAGCTaGTATACATACTCCAATAAA | + |
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Preference number: 4 (lower is better) Translates to: TISSYLRALQIVLSASNPCGWSS*YTYSNK Trigger: TTTATTGGAGTATGTATAGCAGCTACTCCAGCCACA...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR CAA 72 bp | CTTGCTAACCACGTGTATTACCAGGGCCCCAATATCTaGTACAGAGCAGGTATTCAATACTTCCTTTTAAAA | + |
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Preference number: 4 (lower is better) Translates to: LANHVYYQGPNI*YRAGIQYFLLK Trigger: TTTTAAAAGGAAGTATTGAATACCTGCTCTGTACAAGATATTGGGGCCCTGGTAATACACGTGGTTAGCAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| 3UTR CAA 72 bp | TTTCTTGAACAGACAATTTCTTCATACCTTAGGGCTTaGCAAATAGTACTCTCTGCCTCAAACCCCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: FLEQTISSYLRA*QIVLSASNPFL Trigger: GAGAAAGGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGTCTGTTCAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS GCA 90 bp | CAGGTGTCGGTCAGGGACTCTGTTCATCTGATAACAAGAGCCCACTaGCCTGGCAACCTTGGTGTTTCTGAGGCTTTCTTCCTCAGTACT | + |
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Preference number: 5 (lower is better) Translates to: QVSVRDSVHLITRAH*PGNLGVSEAFFLST Trigger: AGTACTGAGGAAGAAAGCCTCAGAAACACCAAGGTTGCCAGGGCAGTGGGCTCTTGTTATCAGATGAACAGAGTCCCTGACCGACACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472343.5 |
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| CDS-3UTR CAA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCAGGAGGTCAAGAGGTaGAGACCATCCTGGCTAACA | + |
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Preference number: 5 (lower is better) Translates to: TISSYLRALQIVLSASNPQEVKR*RPSWLT Trigger: TGTTAGCCAGGATGGTCTCAACCTCTTGACCTCCTG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CAA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCCTGGCTCAGCTGCATaGGCCAAGAATAACAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: TISSYLRALQIVLSASNPPGSAA*AKNNSA Trigger: TGCACTGTTATTCTTGGCCAATGCAGCTGAGCCAGG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS-3UTR CAA 90 bp | ACAATTTCTTCATACCTTAGGGCTTTGCAAATAGTACTCTCTGCCTCAAACCCCCGTAAGTGTGGTGATTaGGATACCAATCATAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: TISSYLRALQIVLSASNPRKCGD*DTNHKS Trigger: AGACTTATGATTGGTATCCAAATCACCACACTTACG...GGGGTTTGAGGCAGAGAGTACTATTTGCAAAGCCCTAAGGTATGAAGAAATTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000324787.10 |
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| CDS GCA 72 bp | GTCAGGGACTCTGTTCATCTGATAACAAGAGCCCACTaGCCTGGCAACCTTGGTGTTTCTGAGGCTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VRDSVHLITRAH*PGNLGVSEAFF Trigger: GAAGAAAGCCTCAGAAACACCAAGGTTGCCAGGGCAGTGGGCTCTTGTTATCAGATGAACAGAGTCCCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472343.5 |
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| CDS GCA 72 bp | TTCCGTATTTTTCTTAAGGTGGTTACAAAATTAATCTaGAGCCCACCACCCAAAGCTACAGTGCCGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: FRIFLKVVTKLI*SPPPKATVPKA Trigger: GGCCTTCGGCACTGTAGCTTTGGGTGGTGGGCTGCAGATTAATTTTGTAACCACCTTAAGAAAAATACGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000393008.7 ENST00000485202.1 |
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| CDS GCA 72 bp | TCTCGTATTTTTCTTAAGGTGGTTACAAAATTAATCTaGAGCCCACCACCCAAAGCTACAGTGCCGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SRIFLKVVTKLI*SPPPKATVPKA Trigger: GGCCTTCGGCACTGTAGCTTTGGGTGGTGGGCTGCAGATTAATTTTGTAACCACCTTAAGAAAAATACGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000484502.1 |
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