Pregenerated sensors for MRPS18C (Homo sapiens)
Ensembl gene IDs: ENSG00000163319Ensembl transcript IDs: ENST00000509970.5, ENST00000512375.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAAGGCTATGTACCTTCTGAGAAATGTGTCATTAGGCAGTTTTATCATTGTGCAGTCATTTCCCCTATTTaGTCTGTAATGCCAATATCA | + |
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Preference number: 2 (lower is better) Translates to: EGYVPSEKCVIRQFYHCAVISPI*SVMPIS Trigger: TGATATTGGCATTACAGATCAAATAGGGGAAATGAC...TGCACAATGATAAAACTGCCTAATGACACATTTCTCAGAAGGTACATAGCCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509970.5 |
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| 3UTR-3UTR CAA 90 bp | GAAGGCTATGTACCTTCTGAGAAATGTGTCATTAGGCAGTTTTATCATTGTGCAGTCCCCAAATTATTATaGAATATCAGTCATTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: EGYVPSEKCVIRQFYHCAVPKLL*NISHFP Trigger: GGGGAAATGACTGATATTCAATAATAATTTGGGGAC...TGCACAATGATAAAACTGCCTAATGACACATTTCTCAGAAGGTACATAGCCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509970.5 |
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| CDS-3UTR GCA 90 bp | GAAGGCTATGTACCTTCTGAGAAATGTGTCATTAGGCAGTTTTATCATTGTGCAAAAGCAGGTCCTCATTaGTGGATACCTGTTGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: EGYVPSEKCVIRQFYHCAKAGPH*WIPVVN Trigger: GTTCACAACAGGTATCCAGCAATGAGGACCTGCTTT...TGCACAATGATAAAACTGCCTAATGACACATTTCTCAGAAGGTACATAGCCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509970.5 |
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| CDS GCA 90 bp | AGCCACCACACCCAGCCAACATACAGAATTCTAGCGCTATTCACTTaGCCCAAATTTGCAACTTCTAACTTGCTGAGAGTTAGACAAGAG | + |
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Preference number: 5 (lower is better) Translates to: SHHTQPTYRILALFT*PKFATSNLLRVRQE Trigger: CTCTTGTCTAACTCTCAGCAAGTTAGAAGTTGCAAATTTGGGGCAAGTGAATAGCGCTAGAATTCTGTATGTTGGCTGGGTGTGGTGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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| CDS TCA 90 bp | GAGATAAAGAGATCAGCTTCACCAGATGAGCTTTTTCCAAAGTTCTaGCCCTCACCAATTGAGAATTACTGCCACAGGGAGCTATTAAGA | + |
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Preference number: 5 (lower is better) Translates to: EIKRSASPDELFPKF*PSPIENYCHRELLR Trigger: TCTTAATAGCTCCCTGTGGCAGTAATTCTCAATTGGTGAGGGTCAGAACTTTGGAAAAAGCTCATCTGGTGAAGCTGATCTCTTTATCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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| CDS TCA 90 bp | GCAACTTCTAACTTGCTGAGAGTTAGACAAGAGATAAGTAATATGTaGATCAGTGATATGGGTGGTGAGATAAAGAGATCAGCTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: ATSNLLRVRQEISNM*ISDMGGEIKRSASP Trigger: TGGTGAAGCTGATCTCTTTATCTCACCACCCATATCACTGATTCACATATTACTTATCTCTTGTCTAACTCTCAGCAAGTTAGAAGTTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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| CDS-3UTR CAA 90 bp | CTATATATCAGCTTTCTATATGTGCTCCAATATAATCTTGTGAGACCCCATCATAGTCATTTCCCCTATTaGATCTGTAATGCCAATATC | + |
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Preference number: 5 (lower is better) Translates to: LYISFLYVLQYNLVRPHHSHFPY*ICNANI Trigger: GATATTGGCATTACAGATCAAATAGGGGAAATGACT...ATGATGGGGTCTCACAAGATTATATTGGAGCACATATAGAAAGCTGATATATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509970.5 |
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| CDS-3UTR CAA 90 bp | CTATATATCAGCTTTCTATATGTGCTCCAATATAATCTTGTGAGACCCCATCATGTCCCCAAATTATTATaGAATATCAGTCATTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LYISFLYVLQYNLVRPHHVPKLL*NISHFP Trigger: GGGGAAATGACTGATATTCAATAATAATTTGGGGAC...ATGATGGGGTCTCACAAGATTATATTGGAGCACATATAGAAAGCTGATATATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509970.5 |
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| CDS TCA 72 bp | CCCATGACTCCCTGTAATCGTATGCAAAACTTCAAATaGATGGGACTGTGTGCCTTTTTCTGTGGAGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: PMTPCNRMQNFK*MGLCAFFCGEG Trigger: ACCCTCTCCACAGAAAAAGGCACACAGTCCCATTCATTTGAAGTTTTGCATACGATTACAGGGAGTCATGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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| CDS GCA 72 bp | ACCCAGCCAACATACAGAATTCTAGCGCTATTCACTTaGCCCAAATTTGCAACTTCTAACTTGCTGAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: TQPTYRILALFT*PKFATSNLLRV Trigger: AACTCTCAGCAAGTTAGAAGTTGCAAATTTGGGGCAAGTGAATAGCGCTAGAATTCTGTATGTTGGCTGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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| CDS CAA 72 bp | GTCTCCAGGATAGAGGTTCTTAATCTAGAAATGGCTTaGAAGCCCATGACTCCCTGTAATCGTATGCAAAAC | + |
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Preference number: 6 (lower is better) Translates to: VSRIEVLNLEMA*KPMTPCNRMQN Trigger: GTTTTGCATACGATTACAGGGAGTCATGGGCTTCAAAGCCATTTCTAGATTAAGAACCTCTATCCTGGAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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| CDS TCA 72 bp | ACAGTTACCTCTACAAAAGCCTGCTATAAACTGACTTaGTTCTCTTTAAGCAGATCTATCAGAAGCAAAACC | + |
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Preference number: 6 (lower is better) Translates to: TVTSTKACYKLT*FSLSRSIRSKT Trigger: GGTTTTGCTTCTGATAGATCTGCTTAAAGAGAATCAAGTCAGTTTATAGCAGGCTTTTGTAGAGGTAACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000512375.1 |
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