Pregenerated sensors for MRPS18A (Homo sapiens)
Ensembl gene IDs: ENSG00000096080Ensembl transcript IDs: ENST00000372133.8, ENST00000427312.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTCAATTGACTCATTGGCCCCATCACAAGAGATCAGTGACTCAATaGTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGCACTTC | + |
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Preference number: 1 (lower is better) Translates to: IQLTHWPHHKRSVTQ*SAPSWQCAQDPLHF Trigger: GAAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR TCA 90 bp | CTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCTGGCACTTCCCAAGCAGTaGGCGCACACCCAATGGGTA | + |
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Preference number: 2 (lower is better) Translates to: LGFTRERQVCQAAHLGSLALPKQ*AHTQWV Trigger: TACCCATTGGGTGTGCGCTCACTGCTTGGGAAGTGC...CAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGAGATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCGGGACCAGGCCATCGTaGTGGGGTGGGACAGGAGTA | + |
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Preference number: 2 (lower is better) Translates to: QEISDSMLSTQLAMCPGPGTRPS*WGGTGV Trigger: TACTCCTGTCCCACCCCACCACGATGGCCTGGTCCC...GGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR CCA 90 bp | TCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGCACTTCCCAAGCCTGTCCATGCATGTTaGAGGGACCAGGCCATCGTG | + |
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Preference number: 2 (lower is better) Translates to: SMLSTQLAMCPGPPALPKPVHAC*RDQAIV Trigger: CACGATGGCCTGGTCCCTCCAACATGCATGGACAGG...CTTGGGAAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR CAA 90 bp | TTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTaGGCTCCCTGCAGCTCTCCCACAGTAAGGAGCTCACAGCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: FLDSHESGKCVRQPT*APCSSPTVRSSQLS Trigger: TGACAGCTGTGAGCTCCTTACTGTGGGAGAGCTGCAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGAGATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCATGAACCCAGTTTATaGCACTGCGTTGGGCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: QEISDSMLSTQLAMCPGPHEPSL*HCVGQN Trigger: GTTTTGCCCAACGCAGTGTCATAAACTGGGTTCATG...GGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCAATGGGTAAGCCCATaGACCCAGTTTATGACACTG | + |
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Preference number: 2 (lower is better) Translates to: FLGFTRERQVCQAAHLGSQWVSP*TQFMTL Trigger: CAGTGTCATAAACTGGGTTCATGGGCTTACCCATTG...GGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR TCA 90 bp | ACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTAGCTCACAGCTGTCATaGAGAGGATGGGACCTGTTT | + |
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Preference number: 2 (lower is better) Translates to: TQFLGFTRERQVCQAAHLSSQLS*RGWDLF Trigger: AAACAGGTCCCATCCTCTTCATGACAGCTGTGAGCT...AAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR GCA 90 bp | CAGCTCTCCCACAGTAAGGAGCTCACAGCTGTCATGAAGAGGATGGGACCTGTTAGATCAGTGACTCAATaGTCAGCACCCAGCTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: QLSHSKELTAVMKRMGPVRSVTQ*SAPSWQ Trigger: TTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCT...AACAGGTCCCATCCTCTTCATGACAGCTGTGAGCTCCTTACTGTGGGAGAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR GCA 90 bp | CCCATGAATTCAATTGACTCATTGGCCCCATCACAAGAGATCAGTGACTCAATGACCCAGCTGGCAATGTaGCCAGGACCCCCTGCACTT | + |
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Preference number: 2 (lower is better) Translates to: PMNSIDSLAPSQEISDSMTQLAM*PGPPAL Trigger: AAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGT...CATTGAGTCACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCAAGGATGGGACCTGTTTaGCCCATGAATTCAATTGAC | + |
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Preference number: 2 (lower is better) Translates to: RNAVSWIHTRAASVSGSPRMGPV*PMNSID Trigger: GTCAATTGAATTCATGGGCCAAACAGGTCCCATCCT...TGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR CAA 90 bp | ATGAAGAGGATGGGACCTGTTTGGCCCATGAATTCAATTGACTCATaGGCCCCATCACAAGAGATCAGTGACTCAATGCTCAGCACCCAG | + |
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Preference number: 2 (lower is better) Translates to: MKRMGPVWPMNSIDS*APSQEISDSMLSTQ Trigger: CTGGGTGCTGAGCATTGAGTCACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGGCCAAACAGGTCCCATCCTCTTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR CAA 90 bp | CAAGAGATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCCTGTCCATGCATGTaGGAGGGACCAGGCCATCGT | + |
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Preference number: 3 (lower is better) Translates to: QEISDSMLSTQLAMCPGPPCPCM*EGPGHR Trigger: ACGATGGCCTGGTCCCTCCAACATGCATGGACAGGG...GGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR-3UTR CAA 90 bp | CTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCTGAATTCAATTGACTCATaGGCCCCATCACAAGAGATC | + |
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Preference number: 3 (lower is better) Translates to: LGFTRERQVCQAAHLGSLNSIDS*APSQEI Trigger: GATCTCTTGTGATGGGGCCAATGAGTCAATTGAATT...CAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | TCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGCACTTCCCAAGGTCCCTCAGAAGGGGTaGCCCCACGGGCATGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: SMLSTQLAMCPGPPALPKVPQKG*PHGHAH Trigger: GTGCGCATGCCCGTGGGGTCACCCCTTCTGAGGGAC...CTTGGGAAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR GCA 90 bp | ACCCCCTGCACTTCCCAAGCAGTGAGCGCACACCCAATGGGTAAGCCCATGAACGTGACCCCACGGGCATaGGCACCCTGTTCCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: TPCTSQAVSAHPMGKPMNVTPRA*APCSSG Trigger: CCCGCTGGAACAGGGTGCGCATGCCCGTGGGGTCAC...GTTCATGGGCTTACCCATTGGGTGTGCGCTCACTGCTTGGGAAGTGCAGGGGGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | AGGAACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCAGAAGCCGAGACCAGCTaGTCGCTGCCGGGCCCGCTA | + |
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Preference number: 4 (lower is better) Translates to: RNAVSWIHTRAASVSGSPEAETS*SLPGPL Trigger: TAGCGGGCCCGGCAGCGACCAGCTGGTCTCGGCTTC...TGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | TTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCGGGACCAGGCCATCGTaGTGGGGTGGGACAGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: FLDSHESGKCVRQPTLAPGTRPS*WGGTGV Trigger: TACTCCTGTCCCACCCCACCACGATGGCCTGGTCCC...GGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| 3UTR CAA 72 bp | TCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTaGGCTCCCTGCAGCTCTCCCACAGTAAGGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SHESGKCVRQPT*APCSSPTVRSS Trigger: TGAGCTCCTTACTGTGGGAGAGCTGCAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR GCA 90 bp | ATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGCAACCCAGCTGGCAATGTaGCCAGGACCCCCTGCACTT | + |
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Preference number: 4 (lower is better) Translates to: ISDSMLSTQLAMCPGPPATQLAM*PGPPAL Trigger: AAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGT...TGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | ACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTTGCTCAGCACCCAGCTaGCAATGTGCCCAGGACCCC | + |
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Preference number: 4 (lower is better) Translates to: TQFLGFTRERQVCQAAHLCSAPS*QCAQDP Trigger: GGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCA...AAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | CAAGAGATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGTCCATGCATGTTaGAGGGACCAGGCCATCGTG | + |
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Preference number: 4 (lower is better) Translates to: QEISDSMLSTQLAMCPGPPVHAC*RDQAIV Trigger: CACGATGGCCTGGTCCCTCCAACATGCATGGACAGG...GGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | AGGAACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCAGCACTTCCCAAGCAGTaGGCGCACACCCAATGGGTA | + |
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Preference number: 4 (lower is better) Translates to: RNAVSWIHTRAASVSGSPALPKQ*AHTQWV Trigger: TACCCATTGGGTGTGCGCTCACTGCTTGGGAAGTGC...TGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR GCA 90 bp | CTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCTGCACACTCCTCGATCTTaGGGTGTTCTTCCTGGCATA | + |
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Preference number: 4 (lower is better) Translates to: LGFTRERQVCQAAHLGSLHTPRS*GVLPGI Trigger: TATGCCAGGAAGAACACCGCAAGATCGAGGAGTGTG...CAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR GCA 90 bp | CTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCTGAGATCAGTGACTCAATaGTCAGCACCCAGCTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: LGFTRERQVCQAAHLGSLRSVTQ*SAPSWQ Trigger: TTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCT...CAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | ATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGCAAGGAACGCAGTTTCTTaGATTCACACGAGAGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: ISDSMLSTQLAMCPGPPARNAVS*IHTRAA Trigger: TGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCT...TGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | CAAGAGATCAGTGACTCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCAGCTCACAGCTGTCATaGAGAGGATGGGACCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: QEISDSMLSTQLAMCPGPSSQLS*RGWDLF Trigger: AAACAGGTCCCATCCTCTTCATGACAGCTGTGAGCT...GGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | ACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTCAATGGGTAAGCCCATaGACCCAGTTTATGACACTG | + |
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Preference number: 4 (lower is better) Translates to: TQFLGFTRERQVCQAAHLQWVSP*TQFMTL Trigger: CAGTGTCATAAACTGGGTTCATGGGCTTACCCATTG...AAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | AGGAACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCAATCACAAGAGATCAGTaGCTCAATGCTCAGCACCCA | + |
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Preference number: 4 (lower is better) Translates to: RNAVSWIHTRAASVSGSPITRDQ*LNAQHP Trigger: TGGGTGCTGAGCATTGAGTCACTGATCTCTTGTGAT...TGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | CAGCTCTCCCACAGTAAGGAGCTCACAGCTGTCATGAAGAGGATGGGACCTGTTAGGTACCGGTTGAGTTaGGGTTTGCTCTTCGGAACA | + |
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Preference number: 4 (lower is better) Translates to: QLSHSKELTAVMKRMGPVRYRLS*GLLFGT Trigger: TGTTCCGAAGAGCAAACCCCAACTCAACCGGTACCT...AACAGGTCCCATCCTCTTCATGACAGCTGTGAGCTCCTTACTGTGGGAGAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | TCAATGCTCAGCACCCAGCTGGCAATGTGCCCAGGACCCCCTGCACTTCCCAAGATTCAATTGACTCATTaGCCCCATCACAAGAGATCA | + |
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Preference number: 4 (lower is better) Translates to: SMLSTQLAMCPGPPALPKIQLTH*PHHKRS Trigger: TGATCTCTTGTGATGGGGCCAATGAGTCAATTGAAT...CTTGGGAAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CCA 90 bp | TTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCAGGATGGGACCTGTTTaGCCCATGAATTCAATTGAC | + |
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Preference number: 4 (lower is better) Translates to: FLGFTRERQVCQAAHLGSRMGPV*PMNSID Trigger: GTCAATTGAATTCATGGGCCAAACAGGTCCCATCCT...GGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | CCTGTTTGGCCCATGAATTCAATTGACTCATTGGCCCCATCACAAGAGATCAGTTTTTGTAGATGGGCTTaGCGGAGCCAGGAGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PVWPMNSIDSLAPSQEISFCRWA*RSQEPS Trigger: GCTGGGCTCCTGGCTCCGTCAAGCCCATCTACAAAA...ACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGGCCAAACAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | GGAGCTCACAGCTGTCATGAAGAGGATGGGACCTGTTTGGCCCATGAATTCAATCATGAACCCAGTTTATaGCACTGCGTTGGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: GAHSCHEEDGTCLAHEFNHEPSL*HCVGQN Trigger: GTTTTGCCCAACGCAGTGTCATAAACTGGGTTCATG...ATTGAATTCATGGGCCAAACAGGTCCCATCCTCTTCATGACAGCTGTGAGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | CCTGTTTGGCCCATGAATTCAATTGACTCATTGGCCCCATCACAAGAGATCAGTGCCCATGAATTCAATTaGCTCATTGGCCCCATCACA | + |
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Preference number: 4 (lower is better) Translates to: PVWPMNSIDSLAPSQEISAHEFN*LIGPIT Trigger: TGTGATGGGGCCAATGAGTCAATTGAATTCATGGGC...ACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGGCCAAACAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR TCA 90 bp | CCCATGAATTCAATTGACTCATTGGCCCCATCACAAGAGATCAGTGACTCAATGGACCTGTTTGGCCCATaGATTCAATTGACTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: PMNSIDSLAPSQEISDSMDLFGP*IQLTHW Trigger: CCAATGAGTCAATTGAATTCATGGGCCAAACAGGTC...CATTGAGTCACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CAA 90 bp | CTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCACCTTGGCTCCCTGCCCTGTCCATGCATGTaGGAGGGACCAGGCCATCGT | + |
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Preference number: 5 (lower is better) Translates to: LGFTRERQVCQAAHLGSLPCPCM*EGPGHR Trigger: ACGATGGCCTGGTCCCTCCAACATGCATGGACAGGG...CAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CAA 90 bp | AGGAACGCAGTTTCTTGGATTCACACGAGAGCGGCAAGTGTGTCAGGCAGCCCAGAGGAACGCAGTTTCTaGGATTCACACGAGAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: RNAVSWIHTRAASVSGSPEERSF*DSHESG Trigger: GCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCTC...TGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CAA 90 bp | ACCCCCTGCACTTCCCAAGCAGTGAGCGCACACCCAATGGGTAAGCCCATGAACAATTCAATTGACTCATaGGCCCCATCACAAGAGATC | + |
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Preference number: 5 (lower is better) Translates to: TPCTSQAVSAHPMGKPMNNSIDS*APSQEI Trigger: GATCTCTTGTGATGGGGCCAATGAGTCAATTGAATT...GTTCATGGGCTTACCCATTGGGTGTGCGCTCACTGCTTGGGAAGTGCAGGGGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CAA 90 bp | GGAGCTCACAGCTGTCATGAAGAGGATGGGACCTGTTTGGCCCATGAATTCAATACACACTCCTCGATCTaGCGGTGTTCTTCCTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: GAHSCHEEDGTCLAHEFNTHSSI*RCSSWH Trigger: ATGCCAGGAAGAACACCGCAAGATCGAGGAGTGTGT...ATTGAATTCATGGGCCAAACAGGTCCCATCCTCTTCATGACAGCTGTGAGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS-3UTR CAA 90 bp | CCCATGAATTCAATTGACTCATTGGCCCCATCACAAGAGATCAGTGACTCAATGCAGGTACCGGTTGAGTaGGGGTTTGCTCTTCGGAAC | + |
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Preference number: 5 (lower is better) Translates to: PMNSIDSLAPSQEISDSMQVPVE*GFALRN Trigger: GTTCCGAAGAGCAAACCCCAACTCAACCGGTACCTG...CATTGAGTCACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000372133.8 |
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| CDS CCA 72 bp | CAGAGGGAAAGCCCAAGGGAGCGGGAAGGTTGGCATTaGGTGGTGAGTATAATTAACACTCCGGATATCCAC | + |
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Preference number: 6 (lower is better) Translates to: QRESPREREGWH*VVSIINTPDIH Trigger: GTGGATATCCGGAGTGTTAATTATACTCACCACCCAATGCCAACCTTCCCGCTCCCTTGGGCTTTCCCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427312.1 |
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